Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007556.01.T01 | XP_018459315.1 | 46.667 | 330 | 158 | 7 | 1 | 323 | 1 | 319 | 2.89E-96 | 298 |
| MsG0280007556.01.T02 | XP_018459315.1 | 46.951 | 328 | 156 | 7 | 1 | 319 | 1 | 319 | 2.42E-94 | 293 |
| MsG0280007556.01.T03 | XP_018459315.1 | 45.161 | 341 | 164 | 7 | 1 | 340 | 1 | 319 | 1.50E-94 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007556.01.T01 | A0A6J0LGH1 | 46.667 | 330 | 158 | 7 | 1 | 323 | 1 | 319 | 1.38e-96 | 298 |
| MsG0280007556.01.T02 | A0A6J0LGH1 | 46.951 | 328 | 156 | 7 | 1 | 319 | 1 | 319 | 1.15e-94 | 293 |
| MsG0280007556.01.T03 | A0A6J0LGH1 | 45.161 | 341 | 164 | 7 | 1 | 340 | 1 | 319 | 7.15e-95 | 295 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000741.01 | MsG0280007556.01 | 0.809841 | 1.550003e-50 | 9.198547e-48 |
| MsG0180001566.01 | MsG0280007556.01 | 0.805251 | 1.460619e-49 | 7.690132e-47 |
| MsG0180002071.01 | MsG0280007556.01 | 0.831493 | 1.617706e-55 | 1.758374e-52 |
| MsG0180005304.01 | MsG0280007556.01 | 0.808605 | 2.852513e-50 | 1.638053e-47 |
| MsG0280007556.01 | MsG0280011201.01 | 0.801403 | 9.155096e-49 | 4.368191e-46 |
| MsG0280007556.01 | MsG0280011293.01 | 0.801391 | 9.204416e-49 | 4.390475e-46 |
| MsG0280007556.01 | MsG0380012192.01 | 0.893304 | 7.120346e-75 | 6.746021e-71 |
| MsG0280007556.01 | MsG0380014576.01 | 0.806704 | 7.227266e-50 | 3.949484e-47 |
| MsG0280007556.01 | MsG0380015191.01 | 0.803015 | 4.265616e-49 | 2.120264e-46 |
| MsG0280007556.01 | MsG0380015893.01 | 0.816949 | 4.247476e-52 | 3.052355e-49 |
| MsG0280007556.01 | MsG0380017452.01 | 0.804055 | 2.595848e-49 | 1.325378e-46 |
| MsG0280007556.01 | MsG0480020144.01 | 0.803142 | 4.014118e-49 | 2.001877e-46 |
| MsG0280007556.01 | MsG0580024073.01 | 0.810648 | 1.038551e-50 | 6.295431e-48 |
| MsG0280007556.01 | MsG0580024157.01 | 0.809190 | 2.138905e-50 | 1.247568e-47 |
| MsG0280007556.01 | MsG0580024960.01 | 0.800134 | 1.661834e-48 | 7.678502e-46 |
| MsG0280007556.01 | MsG0580025900.01 | 0.806656 | 7.397816e-50 | 4.037545e-47 |
| MsG0280007556.01 | MsG0680031114.01 | 0.803461 | 3.447130e-49 | 1.733296e-46 |
| MsG0280007556.01 | MsG0680033302.01 | 0.801397 | 9.179309e-49 | 4.379043e-46 |
| MsG0280007556.01 | MsG0780036950.01 | 0.831581 | 1.538972e-55 | 1.677305e-52 |
| MsG0280007556.01 | MsG0780038828.01 | 0.812679 | 3.756005e-51 | 2.403290e-48 |
| MsG0280007556.01 | MsG0780040788.01 | 0.817093 | 3.942098e-52 | 2.843840e-49 |
| MsG0280007556.01 | MsG0880046264.01 | 0.802010 | 6.872825e-49 | 3.330051e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007556.01.T01 | MTR_7g062720 | 40.541 | 148 | 80 | 3 | 1 | 146 | 1 | 142 | 3.22e-32 | 118 |
| MsG0280007556.01.T01 | MTR_4g037355 | 43.548 | 124 | 57 | 3 | 155 | 273 | 1 | 116 | 7.10e-24 | 95.5 |
| MsG0280007556.01.T01 | MTR_5g061150 | 33.333 | 111 | 74 | 0 | 40 | 150 | 26 | 136 | 7.38e-18 | 79.3 |
| MsG0280007556.01.T01 | MTR_4g112730 | 57.971 | 69 | 28 | 1 | 143 | 211 | 2 | 69 | 2.16e-17 | 76.6 |
| MsG0280007556.01.T02 | MTR_7g062720 | 40.541 | 148 | 80 | 3 | 1 | 146 | 1 | 142 | 2.68e-32 | 118 |
| MsG0280007556.01.T02 | MTR_4g037355 | 43.443 | 122 | 56 | 4 | 155 | 269 | 1 | 116 | 2.13e-23 | 94.0 |
| MsG0280007556.01.T02 | MTR_5g061150 | 33.333 | 111 | 74 | 0 | 40 | 150 | 26 | 136 | 7.12e-18 | 79.3 |
| MsG0280007556.01.T02 | MTR_4g112730 | 57.971 | 69 | 28 | 1 | 143 | 211 | 2 | 69 | 1.64e-17 | 77.0 |
| MsG0280007556.01.T03 | MTR_7g062720 | 40.541 | 148 | 80 | 3 | 1 | 146 | 1 | 142 | 5.36e-32 | 118 |
| MsG0280007556.01.T03 | MTR_4g037355 | 38.298 | 141 | 57 | 4 | 155 | 290 | 1 | 116 | 3.06e-20 | 85.9 |
| MsG0280007556.01.T03 | MTR_5g061150 | 33.333 | 111 | 74 | 0 | 40 | 150 | 26 | 136 | 9.32e-18 | 79.3 |
| MsG0280007556.01.T03 | MTR_4g112730 | 57.971 | 69 | 28 | 1 | 143 | 211 | 2 | 69 | 9.77e-18 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 66 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCTTATTGCCCTCATTAA+TGG | 0.201947 | 2:+17107228 | MsG0280007556.01.T03:CDS |
| AAAGTTGTGGCGTTTATTTC+AGG | 0.203868 | 2:-17107544 | None:intergenic |
| CACGACCTCTACCACGAAAA+TGG | 0.218437 | 2:-17107660 | None:intergenic |
| TGGATCAGTGGAACAAATTA+AGG | 0.229899 | 2:+17107248 | MsG0280007556.01.T03:CDS |
| CAAAAGATCCCAAGATCTTA+TGG | 0.237847 | 2:+17107170 | MsG0280007556.01.T03:CDS |
| GACAAAATTAAAGCAAGATT+TGG | 0.252197 | 2:+17107193 | MsG0280007556.01.T03:CDS |
| GATTCTTGAGGGAGACGATT+TGG | 0.271296 | 2:+17107051 | MsG0280007556.01.T03:CDS |
| CTCAATTAAGTTGTTGTTCC+AGG | 0.274617 | 2:-17107002 | None:intergenic |
| TGTTGAAGAAGAATTTAATA+TGG | 0.313005 | 2:+17107954 | MsG0280007556.01.T03:CDS |
| ATTTACTGAATACTCTGATT+TGG | 0.325598 | 2:+17107438 | MsG0280007556.01.T03:CDS |
| GGGAGATGTCCCAGAGGAAT+TGG | 0.345733 | 2:+17107072 | MsG0280007556.01.T03:CDS |
| CTTGATGATTCTTGTTTGAT+TGG | 0.348440 | 2:-17107720 | None:intergenic |
| ATTCTTGAGGGAGACGATTT+GGG | 0.354692 | 2:+17107052 | MsG0280007556.01.T03:CDS |
| AAGACAGGTAGTGTCATTCT+TGG | 0.372158 | 2:-17107917 | None:intergenic |
| GATTTCTAGAGGGACCTTCC+TGG | 0.373636 | 2:-17107759 | None:intergenic |
| CATATCCACCACGTCCTCTT+TGG | 0.374344 | 2:-17107594 | None:intergenic |
| TATAACTGAAGTGGAAAAGT+TGG | 0.395452 | 2:+17107351 | MsG0280007556.01.T03:CDS |
| ACAAAATTAAAGCAAGATTT+GGG | 0.407053 | 2:+17107194 | MsG0280007556.01.T03:CDS |
| CGTGGTGGATATGCTCGTTT+TGG | 0.409902 | 2:+17107604 | MsG0280007556.01.T03:CDS |
| AAAAGATCCCAAGATCTTAT+GGG | 0.458748 | 2:+17107171 | MsG0280007556.01.T03:CDS |
| AACCATCAGTTGCGTCCTAC+AGG | 0.459311 | 2:+17107508 | MsG0280007556.01.T03:CDS |
| ACGACCTCTACCACGAAAAT+GGG | 0.460127 | 2:-17107659 | None:intergenic |
| AGACAGGTAGTGTCATTCTT+GGG | 0.460988 | 2:-17107916 | None:intergenic |
| CGTGGTAGAGGTCGTGGAAG+AGG | 0.462783 | 2:+17107667 | MsG0280007556.01.T03:CDS |
| AACAAGAATCATCAAGGTAA+AGG | 0.485600 | 2:+17107727 | MsG0280007556.01.T03:CDS |
| ATCTGTGGATGGAAAGGAAA+GGG | 0.491819 | 2:+17107870 | MsG0280007556.01.T03:CDS |
| ATCAAGCACCACATTGATGA+TGG | 0.492315 | 2:+17107124 | MsG0280007556.01.T03:CDS |
| CTGGCGACAACTACATAACC+TGG | 0.502097 | 2:+17106984 | MsG0280007556.01.T03:CDS |
| GATGCGGAAAGAAAGGTCAT+TGG | 0.503149 | 2:+17107800 | MsG0280007556.01.T03:CDS |
| ATGCGGAAAGAAAGGTCATT+GGG | 0.509313 | 2:+17107801 | MsG0280007556.01.T03:CDS |
| TGTTATAGATGCGGAAAGAA+AGG | 0.510631 | 2:+17107793 | MsG0280007556.01.T03:CDS |
| GGACTAGACAAGATTCTTGA+GGG | 0.521095 | 2:+17107040 | MsG0280007556.01.T03:CDS |
| TGCAACAACAATATAGAATG+AGG | 0.523271 | 2:+17107413 | MsG0280007556.01.T03:CDS |
| TTTGATTGGTCATATTTGAG+AGG | 0.528343 | 2:-17107706 | None:intergenic |
| CAAAGAATCTGTGGATGGAA+AGG | 0.532926 | 2:+17107864 | MsG0280007556.01.T03:CDS |
| GTCATTGGGCTAAAGCATGC+AGG | 0.540179 | 2:+17107815 | MsG0280007556.01.T03:CDS |
| CCCTCTAGAAATCATGATGA+TGG | 0.541875 | 2:+17107769 | MsG0280007556.01.T03:CDS |
| GTTCCACTGATCCATTAATG+AGG | 0.543612 | 2:-17107239 | None:intergenic |
| AAAATCAGCAGCTTCAAGAC+AGG | 0.547335 | 2:-17107932 | None:intergenic |
| TCTAGAGGGACCTTCCTGGA+TGG | 0.548529 | 2:-17107755 | None:intergenic |
| TTCCACTGATCCATTAATGA+GGG | 0.554709 | 2:-17107238 | None:intergenic |
| TTCCTGTAGGACGCAACTGA+TGG | 0.562606 | 2:-17107510 | None:intergenic |
| AATTGAGTATCTTGCATGTG+AGG | 0.565013 | 2:+17107018 | MsG0280007556.01.T03:CDS |
| AGGTAAAGGTAAAACCATCC+AGG | 0.569963 | 2:+17107741 | MsG0280007556.01.T03:CDS |
| CCACGAAAATGGGTTCTGCT+AGG | 0.571397 | 2:-17107649 | None:intergenic |
| ATTGAGTATCTTGCATGTGA+GGG | 0.575966 | 2:+17107019 | MsG0280007556.01.T03:CDS |
| GGATATGCCATTGTTCCTGT+AGG | 0.578642 | 2:-17107523 | None:intergenic |
| CAATCAAACAAGAATCATCA+AGG | 0.578649 | 2:+17107721 | MsG0280007556.01.T03:CDS |
| TTTGGTTGCAGCTCTTCTAG+TGG | 0.579996 | 2:+17107456 | MsG0280007556.01.T03:CDS |
| TGCCCTCATTAATGGATCAG+TGG | 0.582546 | 2:+17107236 | MsG0280007556.01.T03:CDS |
| AGATACAAAGAATCTGTGGA+TGG | 0.602731 | 2:+17107859 | MsG0280007556.01.T03:CDS |
| GCAACAACAATATAGAATGA+GGG | 0.604762 | 2:+17107414 | MsG0280007556.01.T03:CDS |
| ACGCCCTTGATTAAAAGTTG+TGG | 0.608515 | 2:-17107557 | None:intergenic |
| TATAATCGCCAAAGAGGACG+TGG | 0.608957 | 2:+17107586 | MsG0280007556.01.T03:CDS |
| GGGACTAGACAAGATTCTTG+AGG | 0.613207 | 2:+17107039 | MsG0280007556.01.T03:CDS |
| ACCATCATCATGATTTCTAG+AGG | 0.616492 | 2:-17107770 | None:intergenic |
| TAAAAGATACAAAGAATCTG+TGG | 0.628320 | 2:+17107855 | MsG0280007556.01.T03:CDS |
| GGTGGTTATAATCGCCAAAG+AGG | 0.642086 | 2:+17107580 | MsG0280007556.01.T03:CDS |
| CCATCATCATGATTTCTAGA+GGG | 0.647682 | 2:-17107769 | None:intergenic |
| GTTGCGTCCTACAGGAACAA+TGG | 0.648629 | 2:+17107516 | MsG0280007556.01.T03:CDS |
| AATCTGTGGATGGAAAGGAA+AGG | 0.653361 | 2:+17107869 | MsG0280007556.01.T03:CDS |
| AAAGGTAAAACCATCCAGGA+AGG | 0.653894 | 2:+17107745 | MsG0280007556.01.T03:CDS |
| AATCGCCAAAGAGGACGTGG+TGG | 0.675947 | 2:+17107589 | MsG0280007556.01.T03:CDS |
| GATGATGGTTGTTATAGATG+CGG | 0.696569 | 2:+17107784 | MsG0280007556.01.T03:CDS |
| TTTGTAATCCATCATCAATG+TGG | 0.715751 | 2:-17107132 | None:intergenic |
| CGATTTGGGAGATGTCCCAG+AGG | 0.725435 | 2:+17107066 | MsG0280007556.01.T03:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATTAAAGCAAGATTT+GGG | + | Chr2:17107194-17107213 | MsG0280007556.01.T03:CDS | 20.0% |
| !! | TGTTGAAGAAGAATTTAATA+TGG | + | Chr2:17107954-17107973 | MsG0280007556.01.T03:CDS | 20.0% |
| !!! | TTCAAAATTTTAAGCATAAC+TGG | + | Chr2:17106965-17106984 | MsG0280007556.01.T03:CDS | 20.0% |
| ! | ATTTACTGAATACTCTGATT+TGG | + | Chr2:17107438-17107457 | MsG0280007556.01.T03:CDS | 25.0% |
| ! | GACAAAATTAAAGCAAGATT+TGG | + | Chr2:17107193-17107212 | MsG0280007556.01.T03:CDS | 25.0% |
| ! | TAAAAGATACAAAGAATCTG+TGG | + | Chr2:17107855-17107874 | MsG0280007556.01.T03:CDS | 25.0% |
| !! | ATTGCACAATTAGAATTTTG+TGG | + | Chr2:17107322-17107341 | MsG0280007556.01.T03:CDS | 25.0% |
| !!! | CAACAACAGTTTTATAATCT+TGG | - | Chr2:17107276-17107295 | None:intergenic | 25.0% |
| AAAAGATCCCAAGATCTTAT+GGG | + | Chr2:17107171-17107190 | MsG0280007556.01.T03:CDS | 30.0% | |
| AACAAGAATCATCAAGGTAA+AGG | + | Chr2:17107727-17107746 | MsG0280007556.01.T03:CDS | 30.0% | |
| CAATCAAACAAGAATCATCA+AGG | + | Chr2:17107721-17107740 | MsG0280007556.01.T03:CDS | 30.0% | |
| GCAACAACAATATAGAATGA+GGG | + | Chr2:17107414-17107433 | MsG0280007556.01.T03:CDS | 30.0% | |
| TATAACTGAAGTGGAAAAGT+TGG | + | Chr2:17107351-17107370 | MsG0280007556.01.T03:CDS | 30.0% | |
| TGCAACAACAATATAGAATG+AGG | + | Chr2:17107413-17107432 | MsG0280007556.01.T03:CDS | 30.0% | |
| TGGCAAAAATATAACTGAAG+TGG | + | Chr2:17107342-17107361 | MsG0280007556.01.T03:CDS | 30.0% | |
| TTTGTAATCCATCATCAATG+TGG | - | Chr2:17107135-17107154 | None:intergenic | 30.0% | |
| ! | AATTTTGTCCCATAAGATCT+TGG | - | Chr2:17107182-17107201 | None:intergenic | 30.0% |
| ! | ATTTTGTCCCATAAGATCTT+GGG | - | Chr2:17107181-17107200 | None:intergenic | 30.0% |
| ! | CTTGATGATTCTTGTTTGAT+TGG | - | Chr2:17107723-17107742 | None:intergenic | 30.0% |
| ! | TATCTTTTACACAGATACTC+TGG | - | Chr2:17107844-17107863 | None:intergenic | 30.0% |
| ! | TTTGATTGGTCATATTTGAG+AGG | - | Chr2:17107709-17107728 | None:intergenic | 30.0% |
| AAAGTTGTGGCGTTTATTTC+AGG | - | Chr2:17107547-17107566 | None:intergenic | 35.0% | |
| AATTGAGTATCTTGCATGTG+AGG | + | Chr2:17107018-17107037 | MsG0280007556.01.T03:CDS | 35.0% | |
| AGATACAAAGAATCTGTGGA+TGG | + | Chr2:17107859-17107878 | MsG0280007556.01.T03:CDS | 35.0% | |
| ATTGAGTATCTTGCATGTGA+GGG | + | Chr2:17107019-17107038 | MsG0280007556.01.T03:CDS | 35.0% | |
| CAAAAGATCCCAAGATCTTA+TGG | + | Chr2:17107170-17107189 | MsG0280007556.01.T03:CDS | 35.0% | |
| TGGATCAGTGGAACAAATTA+AGG | + | Chr2:17107248-17107267 | MsG0280007556.01.T03:CDS | 35.0% | |
| TGTTATAGATGCGGAAAGAA+AGG | + | Chr2:17107793-17107812 | MsG0280007556.01.T03:CDS | 35.0% | |
| TTCCACTGATCCATTAATGA+GGG | - | Chr2:17107241-17107260 | None:intergenic | 35.0% | |
| ! | AACGCCACAACTTTTAATCA+AGG | + | Chr2:17107553-17107572 | MsG0280007556.01.T03:CDS | 35.0% |
| ! | ACCATCATCATGATTTCTAG+AGG | - | Chr2:17107773-17107792 | None:intergenic | 35.0% |
| ! | ACGCCACAACTTTTAATCAA+GGG | + | Chr2:17107554-17107573 | MsG0280007556.01.T03:CDS | 35.0% |
| ! | CCATCATCATGATTTCTAGA+GGG | - | Chr2:17107772-17107791 | None:intergenic | 35.0% |
| ! | CTCAATTAAGTTGTTGTTCC+AGG | - | Chr2:17107005-17107024 | None:intergenic | 35.0% |
| ! | GATGATGGTTGTTATAGATG+CGG | + | Chr2:17107784-17107803 | MsG0280007556.01.T03:CDS | 35.0% |
| ! | TTTTCTTTGCCAATTCCTCT+GGG | - | Chr2:17107084-17107103 | None:intergenic | 35.0% |
| ! | TTTTTCTTTGCCAATTCCTC+TGG | - | Chr2:17107085-17107104 | None:intergenic | 35.0% |
| !! | AGTCTTATTGCCCTCATTAA+TGG | + | Chr2:17107228-17107247 | MsG0280007556.01.T03:CDS | 35.0% |
| AAAATCAGCAGCTTCAAGAC+AGG | - | Chr2:17107935-17107954 | None:intergenic | 40.0% | |
| AAAGGTAAAACCATCCAGGA+AGG | + | Chr2:17107745-17107764 | MsG0280007556.01.T03:CDS | 40.0% | |
| AATCTGTGGATGGAAAGGAA+AGG | + | Chr2:17107869-17107888 | MsG0280007556.01.T03:CDS | 40.0% | |
| ACGCCCTTGATTAAAAGTTG+TGG | - | Chr2:17107560-17107579 | None:intergenic | 40.0% | |
| AGGTAAAGGTAAAACCATCC+AGG | + | Chr2:17107741-17107760 | MsG0280007556.01.T03:CDS | 40.0% | |
| ATCAAGCACCACATTGATGA+TGG | + | Chr2:17107124-17107143 | MsG0280007556.01.T03:CDS | 40.0% | |
| ATCTGTGGATGGAAAGGAAA+GGG | + | Chr2:17107870-17107889 | MsG0280007556.01.T03:CDS | 40.0% | |
| ATGCGGAAAGAAAGGTCATT+GGG | + | Chr2:17107801-17107820 | MsG0280007556.01.T03:CDS | 40.0% | |
| ATTCTTGAGGGAGACGATTT+GGG | + | Chr2:17107052-17107071 | MsG0280007556.01.T03:CDS | 40.0% | |
| CAAAGAATCTGTGGATGGAA+AGG | + | Chr2:17107864-17107883 | MsG0280007556.01.T03:CDS | 40.0% | |
| GGACTAGACAAGATTCTTGA+GGG | + | Chr2:17107040-17107059 | MsG0280007556.01.T03:CDS | 40.0% | |
| GTTCCACTGATCCATTAATG+AGG | - | Chr2:17107242-17107261 | None:intergenic | 40.0% | |
| ! | AACTTTTCATGCATCTCAGG+TGG | + | Chr2:17107387-17107406 | MsG0280007556.01.T03:CDS | 40.0% |
| ! | AAGACAGGTAGTGTCATTCT+TGG | - | Chr2:17107920-17107939 | None:intergenic | 40.0% |
| ! | ACAACTTTTAATCAAGGGCG+TGG | + | Chr2:17107559-17107578 | MsG0280007556.01.T03:CDS | 40.0% |
| ! | AGACAGGTAGTGTCATTCTT+GGG | - | Chr2:17107919-17107938 | None:intergenic | 40.0% |
| ! | CCCTCTAGAAATCATGATGA+TGG | + | Chr2:17107769-17107788 | MsG0280007556.01.T03:CDS | 40.0% |
| ! | CTCAACTTTTCATGCATCTC+AGG | + | Chr2:17107384-17107403 | MsG0280007556.01.T03:CDS | 40.0% |
| ACGACCTCTACCACGAAAAT+GGG | - | Chr2:17107662-17107681 | None:intergenic | 45.0% | |
| GATGCGGAAAGAAAGGTCAT+TGG | + | Chr2:17107800-17107819 | MsG0280007556.01.T03:CDS | 45.0% | |
| GATTCTTGAGGGAGACGATT+TGG | + | Chr2:17107051-17107070 | MsG0280007556.01.T03:CDS | 45.0% | |
| GGATATGCCATTGTTCCTGT+AGG | - | Chr2:17107526-17107545 | None:intergenic | 45.0% | |
| GGGACTAGACAAGATTCTTG+AGG | + | Chr2:17107039-17107058 | MsG0280007556.01.T03:CDS | 45.0% | |
| GGTGGTTATAATCGCCAAAG+AGG | + | Chr2:17107580-17107599 | MsG0280007556.01.T03:CDS | 45.0% | |
| TATAATCGCCAAAGAGGACG+TGG | + | Chr2:17107586-17107605 | MsG0280007556.01.T03:CDS | 45.0% | |
| TTTGGTTGCAGCTCTTCTAG+TGG | + | Chr2:17107456-17107475 | MsG0280007556.01.T03:CDS | 45.0% | |
| ! | AGAACCCATTTTCGTGGTAG+AGG | + | Chr2:17107655-17107674 | MsG0280007556.01.T03:CDS | 45.0% |
| ! | TGCCCTCATTAATGGATCAG+TGG | + | Chr2:17107236-17107255 | MsG0280007556.01.T03:CDS | 45.0% |
| !! | ACTTTTAATCAAGGGCGTGG+TGG | + | Chr2:17107562-17107581 | MsG0280007556.01.T03:CDS | 45.0% |
| AACCATCAGTTGCGTCCTAC+AGG | + | Chr2:17107508-17107527 | MsG0280007556.01.T03:CDS | 50.0% | |
| CACGACCTCTACCACGAAAA+TGG | - | Chr2:17107663-17107682 | None:intergenic | 50.0% | |
| CATATCCACCACGTCCTCTT+TGG | - | Chr2:17107597-17107616 | None:intergenic | 50.0% | |
| CTGGCGACAACTACATAACC+TGG | + | Chr2:17106984-17107003 | MsG0280007556.01.T03:CDS | 50.0% | |
| GTCATTGGGCTAAAGCATGC+AGG | + | Chr2:17107815-17107834 | MsG0280007556.01.T03:CDS | 50.0% | |
| GTTGCGTCCTACAGGAACAA+TGG | + | Chr2:17107516-17107535 | MsG0280007556.01.T03:CDS | 50.0% | |
| TTCCTGTAGGACGCAACTGA+TGG | - | Chr2:17107513-17107532 | None:intergenic | 50.0% | |
| ! | CATTTTCGTGGTAGAGGTCG+TGG | + | Chr2:17107661-17107680 | MsG0280007556.01.T03:CDS | 50.0% |
| ! | CCACGAAAATGGGTTCTGCT+AGG | - | Chr2:17107652-17107671 | None:intergenic | 50.0% |
| ! | CCTAGCAGAACCCATTTTCG+TGG | + | Chr2:17107649-17107668 | MsG0280007556.01.T03:CDS | 50.0% |
| ! | GATTTCTAGAGGGACCTTCC+TGG | - | Chr2:17107762-17107781 | None:intergenic | 50.0% |
| ! | GGTGGATATGCTCGTTTTGG+TGG | + | Chr2:17107607-17107626 | MsG0280007556.01.T03:CDS | 50.0% |
| !! | TATGCTCGTTTTGGTGGTCG+TGG | + | Chr2:17107613-17107632 | MsG0280007556.01.T03:CDS | 50.0% |
| !!! | CGTGGTGGATATGCTCGTTT+TGG | + | Chr2:17107604-17107623 | MsG0280007556.01.T03:CDS | 50.0% |
| AATCGCCAAAGAGGACGTGG+TGG | + | Chr2:17107589-17107608 | MsG0280007556.01.T03:CDS | 55.0% | |
| GGGAGATGTCCCAGAGGAAT+TGG | + | Chr2:17107072-17107091 | MsG0280007556.01.T03:CDS | 55.0% | |
| TCTAGAGGGACCTTCCTGGA+TGG | - | Chr2:17107758-17107777 | None:intergenic | 55.0% | |
| ! | CGATTTGGGAGATGTCCCAG+AGG | + | Chr2:17107066-17107085 | MsG0280007556.01.T03:CDS | 55.0% |
| CGTGGTAGAGGTCGTGGAAG+AGG | + | Chr2:17107667-17107686 | MsG0280007556.01.T03:CDS | 60.0% | |
| !! | CGTTTTGGTGGTCGTGGTCG+AGG | + | Chr2:17107619-17107638 | MsG0280007556.01.T03:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 17106944 | 17107981 | 17106944 | ID=MsG0280007556.01;Name=MsG0280007556.01 |
| Chr2 | mRNA | 17106944 | 17107981 | 17106944 | ID=MsG0280007556.01.T01;Parent=MsG0280007556.01;Name=MsG0280007556.01.T01;_AED=0.49;_eAED=0.63;_QI=0|0|0|1|0|0|2|0|328 |
| Chr2 | exon | 17106944 | 17107575 | 17106944 | ID=MsG0280007556.01.T01:exon:4483;Parent=MsG0280007556.01.T01 |
| Chr2 | exon | 17107627 | 17107981 | 17107627 | ID=MsG0280007556.01.T01:exon:4484;Parent=MsG0280007556.01.T01 |
| Chr2 | CDS | 17106944 | 17107575 | 17106944 | ID=MsG0280007556.01.T01:cds;Parent=MsG0280007556.01.T01 |
| Chr2 | CDS | 17107627 | 17107981 | 17107627 | ID=MsG0280007556.01.T01:cds;Parent=MsG0280007556.01.T01 |
| Chr2 | mRNA | 17106944 | 17107981 | 17106944 | ID=MsG0280007556.01.T02;Parent=MsG0280007556.01;Name=MsG0280007556.01.T02;_AED=0.49;_eAED=0.63;_QI=0|0|0|1|0|0|2|0|324 |
| Chr2 | exon | 17106944 | 17107607 | 17106944 | ID=MsG0280007556.01.T02:exon:4485;Parent=MsG0280007556.01.T02 |
| Chr2 | exon | 17107671 | 17107981 | 17107671 | ID=MsG0280007556.01.T02:exon:4486;Parent=MsG0280007556.01.T02 |
| Chr2 | CDS | 17106944 | 17107607 | 17106944 | ID=MsG0280007556.01.T02:cds;Parent=MsG0280007556.01.T02 |
| Chr2 | CDS | 17107671 | 17107981 | 17107671 | ID=MsG0280007556.01.T02:cds;Parent=MsG0280007556.01.T02 |
| Chr2 | mRNA | 17106944 | 17107981 | 17106944 | ID=MsG0280007556.01.T03;Parent=MsG0280007556.01;Name=MsG0280007556.01.T03;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|0|1|0|345 |
| Chr2 | exon | 17106944 | 17107981 | 17106944 | ID=MsG0280007556.01.T03:exon:4487;Parent=MsG0280007556.01.T03 |
| Chr2 | CDS | 17106944 | 17107981 | 17106944 | ID=MsG0280007556.01.T03:cds;Parent=MsG0280007556.01.T03 |
| Gene Sequence |
| Protein sequence |
