AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025900.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025900.01.T01 MTR_5g036560 90.557 413 23 3 1 400 1 410 0.0 749
MsG0580025900.01.T01 MTR_3g086090 30.030 333 186 13 10 316 31 342 1.04e-23 103
MsG0580025900.01.T01 MTR_3g086090 28.814 354 184 14 10 316 31 363 8.69e-22 98.2
MsG0580025900.01.T01 MTR_3g086090 28.814 354 184 14 10 316 12 344 1.15e-21 97.8
MsG0580025900.01.T01 MTR_6g022230 67.857 56 18 0 7 62 27 82 3.54e-19 89.7
MsG0580025900.01.T01 MTR_0117s0080 64.151 53 19 0 10 62 35 87 1.72e-17 84.0
MsG0580025900.01.T02 MTR_5g036560 90.557 413 23 3 1 400 1 410 0.0 749
MsG0580025900.01.T02 MTR_3g086090 30.030 333 186 13 10 316 31 342 1.04e-23 103
MsG0580025900.01.T02 MTR_3g086090 28.814 354 184 14 10 316 31 363 8.69e-22 98.2
MsG0580025900.01.T02 MTR_3g086090 28.814 354 184 14 10 316 12 344 1.15e-21 97.8
MsG0580025900.01.T02 MTR_6g022230 67.857 56 18 0 7 62 27 82 3.54e-19 89.7
MsG0580025900.01.T02 MTR_0117s0080 64.151 53 19 0 10 62 35 87 1.72e-17 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025900.01.T01 AT1G24160 37.391 460 182 21 6 400 30 448 5.76e-58 198
MsG0580025900.01.T01 AT1G24160 37.391 460 182 21 6 400 30 448 5.76e-58 198
MsG0580025900.01.T01 AT1G70100 38.257 413 196 14 6 385 20 406 6.15e-57 194
MsG0580025900.01.T01 AT1G70100 38.257 413 196 14 6 385 20 406 6.15e-57 194
MsG0580025900.01.T01 AT1G70100 38.257 413 196 14 6 385 20 406 6.15e-57 194
MsG0580025900.01.T01 AT1G70100 39.225 413 192 16 6 385 20 406 9.34e-57 193
MsG0580025900.01.T01 AT1G70100 39.225 413 192 16 6 385 20 406 2.15e-56 193
MsG0580025900.01.T01 AT1G70100 39.225 413 192 16 6 385 20 406 2.15e-56 193
MsG0580025900.01.T01 AT3G26050 52.564 78 37 0 8 85 28 105 5.60e-20 92.4
MsG0580025900.01.T01 AT3G27350 64.516 62 21 1 10 70 30 91 1.30e-18 85.5
MsG0580025900.01.T01 AT3G27350 64.516 62 21 1 10 70 30 91 4.09e-18 85.1
MsG0580025900.01.T01 AT1G70950 60.656 61 24 0 8 68 16 76 1.50e-17 84.7
MsG0580025900.01.T01 AT5G40700 66.038 53 18 0 10 62 30 82 5.26e-17 80.9
MsG0580025900.01.T01 AT5G40700 66.038 53 18 0 10 62 30 82 1.03e-16 80.5
MsG0580025900.01.T01 AT5G40700 66.038 53 18 0 10 62 30 82 1.05e-16 80.5
MsG0580025900.01.T01 AT1G23060 62.295 61 23 0 8 68 16 76 1.91e-16 80.5
MsG0580025900.01.T01 AT1G23060 62.295 61 23 0 8 68 16 76 1.91e-16 80.5
MsG0580025900.01.T01 AT3G01710 61.404 57 21 1 7 62 20 76 1.27e-14 74.7
MsG0580025900.01.T01 AT3G01710 61.404 57 21 1 7 62 20 76 1.55e-14 75.1
MsG0580025900.01.T01 AT3G01710 61.404 57 21 1 7 62 20 76 1.75e-14 75.1
MsG0580025900.01.T01 AT3G01710 61.404 57 21 1 7 62 20 76 2.04e-14 74.7
MsG0580025900.01.T01 AT3G27350 67.347 49 15 1 23 70 3 51 2.26e-13 70.5
MsG0580025900.01.T02 AT1G24160 37.391 460 182 21 6 400 30 448 5.76e-58 198
MsG0580025900.01.T02 AT1G24160 37.391 460 182 21 6 400 30 448 5.76e-58 198
MsG0580025900.01.T02 AT1G70100 38.257 413 196 14 6 385 20 406 6.15e-57 194
MsG0580025900.01.T02 AT1G70100 38.257 413 196 14 6 385 20 406 6.15e-57 194
MsG0580025900.01.T02 AT1G70100 38.257 413 196 14 6 385 20 406 6.15e-57 194
MsG0580025900.01.T02 AT1G70100 39.225 413 192 16 6 385 20 406 9.34e-57 193
MsG0580025900.01.T02 AT1G70100 39.225 413 192 16 6 385 20 406 2.15e-56 193
MsG0580025900.01.T02 AT1G70100 39.225 413 192 16 6 385 20 406 2.15e-56 193
MsG0580025900.01.T02 AT3G26050 52.564 78 37 0 8 85 28 105 5.60e-20 92.4
MsG0580025900.01.T02 AT3G27350 64.516 62 21 1 10 70 30 91 1.30e-18 85.5
MsG0580025900.01.T02 AT3G27350 64.516 62 21 1 10 70 30 91 4.09e-18 85.1
MsG0580025900.01.T02 AT1G70950 60.656 61 24 0 8 68 16 76 1.50e-17 84.7
MsG0580025900.01.T02 AT5G40700 66.038 53 18 0 10 62 30 82 5.26e-17 80.9
MsG0580025900.01.T02 AT5G40700 66.038 53 18 0 10 62 30 82 1.03e-16 80.5
MsG0580025900.01.T02 AT5G40700 66.038 53 18 0 10 62 30 82 1.05e-16 80.5
MsG0580025900.01.T02 AT1G23060 62.295 61 23 0 8 68 16 76 1.91e-16 80.5
MsG0580025900.01.T02 AT1G23060 62.295 61 23 0 8 68 16 76 1.91e-16 80.5
MsG0580025900.01.T02 AT3G01710 61.404 57 21 1 7 62 20 76 1.27e-14 74.7
MsG0580025900.01.T02 AT3G01710 61.404 57 21 1 7 62 20 76 1.55e-14 75.1
MsG0580025900.01.T02 AT3G01710 61.404 57 21 1 7 62 20 76 1.75e-14 75.1
MsG0580025900.01.T02 AT3G01710 61.404 57 21 1 7 62 20 76 2.04e-14 74.7
MsG0580025900.01.T02 AT3G27350 67.347 49 15 1 23 70 3 51 2.26e-13 70.5

Find 7 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATGTCTTTCCAACAATTT+TGG 0.117947 5:-26368197 MsG0580025900.01.T01:five_prime_UTR
AAGCTACAACCCAAAATTGT+TGG 0.410245 5:+26368187 None:intergenic
ATGATGATGTTACTGTAGTA+AGG 0.415437 5:-26368440 MsG0580025900.01.T02:five_prime_UTR
TTGTGAATTTCTTCAAGATA+AGG 0.433130 5:-26368165 MsG0580025900.01.T01:intron
AAAATGATTAATCTTGATCA+TGG 0.470551 5:-26368234 MsG0580025900.01.T01:five_prime_UTR
AATGATTATGAGTAAAGTAA+AGG 0.506528 5:+26368344 None:intergenic
TGATGATGTTACTGTAGTAA+GGG 0.569285 5:-26368439 MsG0580025900.01.T02:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATAATGTTAAATTTTTTAA+AGG - Chr5:26367779-26367798 MsG0580025900.01.T01:CDS 10.0%
!! AAAACAACAAAAATAAGAAA+TGG + Chr5:26366753-26366772 None:intergenic 15.0%
!! AAACAACAAAAATAAGAAAT+GGG + Chr5:26366752-26366771 None:intergenic 15.0%
!!! CAAACATTTTAATAAACATA+TGG + Chr5:26366924-26366943 None:intergenic 15.0%
!!! GTAAAAATGTTGTTTTTTTT+TGG - Chr5:26366951-26366970 MsG0580025900.01.T01:CDS 15.0%
!! AAAATGATTAATCTTGATCA+TGG - Chr5:26366653-26366672 MsG0580025900.01.T01:CDS 20.0%
!! AATGATTATGAGTAAAGTAA+AGG + Chr5:26366546-26366565 None:intergenic 20.0%
!! GTTATATATGGTGATAAATT+TGG - Chr5:26368302-26368321 MsG0580025900.01.T01:five_prime_UTR 20.0%
!!! ATGATTTTTTACATATATCC+TGG - Chr5:26368374-26368393 MsG0580025900.01.T02:intron 20.0%
!!! ATTGTTGTTTGATTGTAAAA+AGG - Chr5:26366978-26366997 MsG0580025900.01.T01:CDS 20.0%
!!! TATTTGATTACCGTTTATTT+TGG - Chr5:26367807-26367826 MsG0580025900.01.T01:CDS 20.0%
! ACTTCTTCCAAATACTTATT+TGG + Chr5:26367144-26367163 None:intergenic 25.0%
! ATATAAAAAACATGTGCATG+TGG + Chr5:26366516-26366535 None:intergenic 25.0%
! ATTCTCTCCAAATAAGTATT+TGG - Chr5:26367134-26367153 MsG0580025900.01.T01:intron 25.0%
! GATAACCTATCCAAAATAAA+CGG + Chr5:26367820-26367839 None:intergenic 25.0%
! TGAAGAAAAAGATGTGAAAT+TGG - Chr5:26367698-26367717 MsG0580025900.01.T01:CDS 25.0%
! TTCAGATCAGAAGAAAATAA+TGG - Chr5:26367294-26367313 MsG0580025900.01.T01:CDS 25.0%
! TTGTGAATTTCTTCAAGATA+AGG - Chr5:26366722-26366741 MsG0580025900.01.T01:CDS 25.0%
!! TATGTCTTTCCAACAATTTT+GGG - Chr5:26366691-26366710 MsG0580025900.01.T01:CDS 25.0%
!!! ATTGTTGTTGTTTGATTAGA+TGG - Chr5:26367020-26367039 MsG0580025900.01.T01:CDS 25.0%
!!! GGTTTGCTTTATTTCATATT+TGG - Chr5:26367740-26367759 MsG0580025900.01.T01:CDS 25.0%
!!! TGTAAATCTGTTTTGTTCTT+AGG - Chr5:26366808-26366827 MsG0580025900.01.T01:CDS 25.0%
!!! TTGTTGTTGTTTGATTAGAT+GGG - Chr5:26367021-26367040 MsG0580025900.01.T01:CDS 25.0%
AAGCAAACCTTAGATTTCTT+TGG + Chr5:26367729-26367748 None:intergenic 30.0%
AATAATGGTATAGATCTGAG+CGG - Chr5:26367309-26367328 MsG0580025900.01.T01:CDS 30.0%
ATCTCTCATTATGGATAGTA+TGG - Chr5:26368142-26368161 MsG0580025900.01.T01:intron 30.0%
CTGCAGTTCATTGTTATATA+TGG - Chr5:26368290-26368309 MsG0580025900.01.T01:five_prime_UTR 30.0%
GTAGTAAGGGAAAAAAAGAA+GGG - Chr5:26366461-26366480 MsG0580025900.01.T01:CDS 30.0%
TATGAGGAAATCTCTCATTA+TGG - Chr5:26368133-26368152 MsG0580025900.01.T01:intron 30.0%
TCTCTCATTATGGATAGTAT+GGG - Chr5:26368143-26368162 MsG0580025900.01.T01:intron 30.0%
TGTAGTAAGGGAAAAAAAGA+AGG - Chr5:26366460-26366479 MsG0580025900.01.T01:CDS 30.0%
! ATGATGATGTTACTGTAGTA+AGG - Chr5:26366447-26366466 MsG0580025900.01.T01:CDS 30.0%
! CATTATTTTCCCTATTCACA+GGG + Chr5:26367842-26367861 None:intergenic 30.0%
! CTATGTCTTTCCAACAATTT+TGG - Chr5:26366690-26366709 MsG0580025900.01.T01:CDS 30.0%
! TGATAATGATTCACTGTCAT+GGG - Chr5:26367098-26367117 MsG0580025900.01.T01:intron 30.0%
! TGATGATGTTACTGTAGTAA+GGG - Chr5:26366448-26366467 MsG0580025900.01.T01:CDS 30.0%
! TTTTTACATATATCCTGGAC+AGG - Chr5:26368379-26368398 MsG0580025900.01.T02:intron 30.0%
!! AATCTGTTTTGTTCTTAGGT+TGG - Chr5:26366812-26366831 MsG0580025900.01.T01:CDS 30.0%
!! TTGATAATGATTCACTGTCA+TGG - Chr5:26367097-26367116 MsG0580025900.01.T01:intron 30.0%
!!! ATTTCCCTTTTTAGTTGAAG+CGG + Chr5:26367973-26367992 None:intergenic 30.0%
!!! GATTACCGTTTATTTTGGAT+AGG - Chr5:26367812-26367831 MsG0580025900.01.T01:CDS 30.0%
AAGCTACAACCCAAAATTGT+TGG + Chr5:26366703-26366722 None:intergenic 35.0%
AGCTCATTACAAGAAGATTG+CGG - Chr5:26367215-26367234 MsG0580025900.01.T01:CDS 35.0%
ATAGGTTATCCCTGTGAATA+GGG - Chr5:26367830-26367849 MsG0580025900.01.T01:CDS 35.0%
ATCAGCTCCAACTAAAACAT+TGG - Chr5:26367941-26367960 MsG0580025900.01.T01:intron 35.0%
CAAAACAAAGAAGAAACCAG+TGG - Chr5:26367866-26367885 MsG0580025900.01.T01:intron 35.0%
CTCTCATTATGGATAGTATG+GGG - Chr5:26368144-26368163 MsG0580025900.01.T01:intron 35.0%
GGATCATCCAAAGAAATCTA+AGG - Chr5:26367719-26367738 MsG0580025900.01.T01:CDS 35.0%
TCAACTTTGCGGAAAGAAAA+TGG - Chr5:26368440-26368459 MsG0580025900.01.T02:five_prime_UTR 35.0%
TCTCATTATGGATAGTATGG+GGG - Chr5:26368145-26368164 MsG0580025900.01.T01:intron 35.0%
TGTGTACAAAGAGACAGAAA+AGG - Chr5:26367665-26367684 MsG0580025900.01.T01:CDS 35.0%
TTACCAAAGTTCATCAGTTG+AGG - Chr5:26367512-26367531 MsG0580025900.01.T01:CDS 35.0%
TTCCAACTTCTTCAACTTTG+CGG - Chr5:26368429-26368448 MsG0580025900.01.T02:five_prime_UTR 35.0%
! GCATTATTTTCCCTATTCAC+AGG + Chr5:26367843-26367862 None:intergenic 35.0%
! TCTTCTTCAACGGAAGTTTT+TGG + Chr5:26368224-26368243 None:intergenic 35.0%
! TTGGCTGGTTAAAATTCTTC+TGG + Chr5:26368205-26368224 None:intergenic 35.0%
! TTTATGCACACGTCTTTTTC+AGG + Chr5:26367591-26367610 None:intergenic 35.0%
!! TTGCAAGTGTCTGTTTCTTT+TGG - Chr5:26367069-26367088 MsG0580025900.01.T01:intron 35.0%
!!! CACTGGTTTCTTCTTTGTTT+TGG + Chr5:26367868-26367887 None:intergenic 35.0%
AGAGATTTCCTCATAGTACG+AGG + Chr5:26368128-26368147 None:intergenic 40.0%
AGTTGAGGTGGAGAATAAAG+AGG - Chr5:26367527-26367546 MsG0580025900.01.T01:CDS 40.0%
CATAGACATGTGCAAAGATC+TGG + Chr5:26368054-26368073 None:intergenic 40.0%
CTTCTCTTGAGCCAACAATT+CGG + Chr5:26367250-26367269 None:intergenic 40.0%
CTTTGCGGAAAGAAAATGGA+AGG - Chr5:26368444-26368463 MsG0580025900.01.T02:five_prime_UTR 40.0%
GAGAATAAAGAGGTGGAAAG+TGG - Chr5:26367537-26367556 MsG0580025900.01.T01:CDS 40.0%
GATAGGTTATCCCTGTGAAT+AGG - Chr5:26367829-26367848 MsG0580025900.01.T01:CDS 40.0%
GCAAGAAATTGAAATCAGCC+CGG - Chr5:26367422-26367441 MsG0580025900.01.T01:CDS 40.0%
TATGGATAGTATGGGGGATA+AGG - Chr5:26368151-26368170 MsG0580025900.01.T01:intron 40.0%
TCGGTAAAACAGCAGGTAAT+TGG - Chr5:26368251-26368270 MsG0580025900.01.T01:five_prime_UTR 40.0%
TTCCGCAAAGTTGAAGAAGT+TGG + Chr5:26368434-26368453 None:intergenic 40.0%
TTCGGTATTTCCAACACTCA+AGG - Chr5:26367375-26367394 MsG0580025900.01.T01:CDS 40.0%
TTGCACATGTCTATGAGCTT+AGG - Chr5:26368059-26368078 MsG0580025900.01.T01:intron 40.0%
! ATCTGCCGCTTCAACTAAAA+AGG - Chr5:26367965-26367984 MsG0580025900.01.T01:intron 40.0%
! GTCGAAATTTGAGATGCCTT+AGG + Chr5:26367900-26367919 None:intergenic 40.0%
! TCTGCCGCTTCAACTAAAAA+GGG - Chr5:26367966-26367985 MsG0580025900.01.T01:intron 40.0%
!! GATGTAGGCTTTGAACTTCT+CGG + Chr5:26367924-26367943 None:intergenic 40.0%
!! TGTGAGACTGATTCGGAATT+CGG - Chr5:26367357-26367376 MsG0580025900.01.T01:CDS 40.0%
!!! GCAGATGCCAATGTTTTAGT+TGG + Chr5:26367951-26367970 None:intergenic 40.0%
!!! GTTTTAGTTGGAGCTGATGT+AGG + Chr5:26367939-26367958 None:intergenic 40.0%
AACCAGTTCCTCGTACTATG+AGG - Chr5:26368117-26368136 MsG0580025900.01.T01:intron 45.0%
ATTACAAGAAGATTGCGGCC+CGG - Chr5:26367220-26367239 MsG0580025900.01.T01:CDS 45.0%
ATTCACTGTCATGGGAGAGA+TGG - Chr5:26367106-26367125 MsG0580025900.01.T01:intron 45.0%
CCAAAGTTCATCAGTTGAGG+TGG - Chr5:26367515-26367534 MsG0580025900.01.T01:CDS 45.0%
CCACCTCAACTGATGAACTT+TGG + Chr5:26367518-26367537 None:intergenic 45.0%
CGACGATCTGTCTTCTTCAA+CGG + Chr5:26368234-26368253 None:intergenic 45.0%
CGTTGAAGAAGACAGATCGT+CGG - Chr5:26368232-26368251 MsG0580025900.01.T01:five_prime_UTR 45.0%
CGTTGAAGCTGAAGATGTGA+AGG - Chr5:26367629-26367648 MsG0580025900.01.T01:CDS 45.0%
GAAATTGAAATCAGCCCGGT+TGG - Chr5:26367426-26367445 MsG0580025900.01.T01:CDS 45.0%
GAATTCCGAATCAGTCTCAC+AGG + Chr5:26367358-26367377 None:intergenic 45.0%
GAGGCAAGTTACTTCTAGTG+TGG - Chr5:26368010-26368029 MsG0580025900.01.T01:intron 45.0%
GAGTCATGCGGATGATTTGA+AGG - Chr5:26367461-26367480 MsG0580025900.01.T01:CDS 45.0%
GGTACAACTACCTTGAGTGT+TGG + Chr5:26367388-26367407 None:intergenic 45.0%
GGTATAGATCTGAGCGGTAA+TGG - Chr5:26367315-26367334 MsG0580025900.01.T01:CDS 45.0%
GGTTCAGTAGTATGAGGAAC+TGG + Chr5:26368101-26368120 None:intergenic 45.0%
GTAGTATGAGGAACTGGATC+AGG + Chr5:26368095-26368114 None:intergenic 45.0%
TAACGCCTGTGAGACTGATT+CGG - Chr5:26367350-26367369 MsG0580025900.01.T01:CDS 45.0%
TCAAGAGAAGGAGATGGAGA+GGG - Chr5:26367260-26367279 MsG0580025900.01.T01:CDS 45.0%
TCATGCGGATGATTTGAAGG+AGG - Chr5:26367464-26367483 MsG0580025900.01.T01:CDS 45.0%
TGAAATCAGCAGGAGTCATG+CGG - Chr5:26367449-26367468 MsG0580025900.01.T01:CDS 45.0%
TGAGGTGGAGAATAAAGAGG+TGG - Chr5:26367530-26367549 MsG0580025900.01.T01:CDS 45.0%
TTCCTCATAGTACGAGGAAC+TGG + Chr5:26368122-26368141 None:intergenic 45.0%
TTCTTGCTTATCGCGTTCCT+CGG + Chr5:26367409-26367428 None:intergenic 45.0%
! AGTAACTTGCCTCCTAGGTA+AGG + Chr5:26368003-26368022 None:intergenic 45.0%
! CTAGAAGTAACTTGCCTCCT+AGG + Chr5:26368008-26368027 None:intergenic 45.0%
! GATCTGAGCGGTAATGGTAA+CGG - Chr5:26367321-26367340 MsG0580025900.01.T01:CDS 45.0%
! GGAACTGGTTCAGTAGTATG+AGG + Chr5:26368107-26368126 None:intergenic 45.0%
! TTCTTCTGTGCTACTGATCC+AGG + Chr5:26367183-26367202 None:intergenic 45.0%
!! CGAATTGTTGGCTCAAGAGA+AGG - Chr5:26367248-26367267 MsG0580025900.01.T01:CDS 45.0%
!!! CTTCAACGGAAGTTTTTGGC+TGG + Chr5:26368220-26368239 None:intergenic 45.0%
ACCAGTGGCAGCAAAACCTA+AGG - Chr5:26367881-26367900 MsG0580025900.01.T01:intron 50.0%
AGCCAACAATTCGGCTTTCC+GGG + Chr5:26367241-26367260 None:intergenic 50.0%
CACTCAAGGTAGTTGTACCG+AGG - Chr5:26367389-26367408 MsG0580025900.01.T01:CDS 50.0%
CAGATCGTCGGTAAAACAGC+AGG - Chr5:26368244-26368263 MsG0580025900.01.T01:five_prime_UTR 50.0%
CTCAAGAGAAGGAGATGGAG+AGG - Chr5:26367259-26367278 MsG0580025900.01.T01:CDS 50.0%
GAAATCCGCAGTCCTTACCT+AGG - Chr5:26367988-26368007 MsG0580025900.01.T01:intron 50.0%
GAGCCAACAATTCGGCTTTC+CGG + Chr5:26367242-26367261 None:intergenic 50.0%
GAGGTGGAAAGTGGATCACA+TGG - Chr5:26367546-26367565 MsG0580025900.01.T01:CDS 50.0%
GGAACTGGATCAGGCTTACT+TGG + Chr5:26368086-26368105 None:intergenic 50.0%
GGATGATTTGAAGGAGGAGG+AGG - Chr5:26367470-26367489 MsG0580025900.01.T01:CDS 50.0%
TGCGGATGATTTGAAGGAGG+AGG - Chr5:26367467-26367486 MsG0580025900.01.T01:CDS 50.0%
! GTTGAGAAGTGTGCTACACC+TGG - Chr5:26367162-26367181 MsG0580025900.01.T01:intron 50.0%
! GTTGGCTCAAGAGAAGGAGA+TGG - Chr5:26367254-26367273 MsG0580025900.01.T01:CDS 50.0%
!! CTCCTGCTGATTTCACCAAC+CGG + Chr5:26367444-26367463 None:intergenic 50.0%
!! TCCTGCTGATTTCACCAACC+GGG + Chr5:26367443-26367462 None:intergenic 50.0%
AGAAGGAGATGGAGAGGGAG+AGG - Chr5:26367265-26367284 MsG0580025900.01.T01:CDS 55.0%
ATCCGCAGTCCTTACCTAGG+AGG - Chr5:26367991-26368010 MsG0580025900.01.T01:intron 55.0%
ATCCTGGACAGGCTCCTTCA+AGG - Chr5:26368390-26368409 MsG0580025900.01.T02:intron 55.0%
GAAGGAGATGGAGAGGGAGA+GGG - Chr5:26367266-26367285 MsG0580025900.01.T01:CDS 55.0%
GAAGGAGGAGGAGGAAGTTG+CGG - Chr5:26367479-26367498 MsG0580025900.01.T01:CDS 55.0%
GGAGGAGGAAGTTGCGGTTT+CGG - Chr5:26367485-26367504 MsG0580025900.01.T01:CDS 55.0%
TCCTGGACAGGCTCCTTCAA+GGG - Chr5:26368391-26368410 MsG0580025900.01.T02:intron 55.0%
TGCCTCCTAGGTAAGGACTG+CGG + Chr5:26367996-26368015 None:intergenic 55.0%
TTCAAGGGGGACTGCGTCAA+AGG - Chr5:26368406-26368425 MsG0580025900.01.T02:intron 55.0%
TTTGACGCAGTCCCCCTTGA+AGG + Chr5:26368407-26368426 None:intergenic 55.0%
! GCCTTAGGTTTTGCTGCCAC+TGG + Chr5:26367885-26367904 None:intergenic 55.0%
CCTGGACAGGCTCCTTCAAG+GGG - Chr5:26368392-26368411 MsG0580025900.01.T02:intron 60.0%
CTGGACAGGCTCCTTCAAGG+GGG - Chr5:26368393-26368412 MsG0580025900.01.T02:intron 60.0%
GGCCCGGAAAGCCGAATTGT+TGG - Chr5:26367236-26367255 MsG0580025900.01.T01:CDS 60.0%
!! GCCCGGTTGGTGAAATCAGC+AGG - Chr5:26367439-26367458 MsG0580025900.01.T01:CDS 60.0%
CCCCTTGAAGGAGCCTGTCC+AGG + Chr5:26368395-26368414 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 26366440 26368469 26366440 ID=MsG0580025900.01;Name=MsG0580025900.01
Chr5 mRNA 26366440 26368392 26366440 ID=MsG0580025900.01.T01;Parent=MsG0580025900.01;Name=MsG0580025900.01.T01;_AED=0.39;_eAED=0.39;_QI=227|1|0.75|1|0.66|0.75|4|0|400
Chr5 exon 26368166 26368392 26368166 ID=MsG0580025900.01.T01:exon:4341;Parent=MsG0580025900.01.T01
Chr5 five_prime_UTR 26368166 26368392 26368166 ID=MsG0580025900.01.T01:five_prime_utr;Parent=MsG0580025900.01.T01
Chr5 CDS 26367169 26367870 26367169 ID=MsG0580025900.01.T01:cds;Parent=MsG0580025900.01.T01
Chr5 CDS 26366644 26367075 26366644 ID=MsG0580025900.01.T01:cds;Parent=MsG0580025900.01.T01
Chr5 CDS 26366440 26366508 26366440 ID=MsG0580025900.01.T01:cds;Parent=MsG0580025900.01.T01
Chr5 mRNA 26366440 26368469 26366440 ID=MsG0580025900.01.T02;Parent=MsG0580025900.01;Name=MsG0580025900.01.T02;_AED=0.40;_eAED=0.40;_QI=43|1|0.75|1|0.66|0.75|4|0|400
Chr5 exon 26368427 26368469 26368427 ID=MsG0580025900.01.T02:exon:4345;Parent=MsG0580025900.01.T02
Chr5 five_prime_UTR 26368427 26368469 26368427 ID=MsG0580025900.01.T02:five_prime_utr;Parent=MsG0580025900.01.T02
Chr5 CDS 26367169 26367870 26367169 ID=MsG0580025900.01.T02:cds;Parent=MsG0580025900.01.T02
Chr5 CDS 26366644 26367075 26366644 ID=MsG0580025900.01.T02:cds;Parent=MsG0580025900.01.T02
Chr5 CDS 26366440 26366508 26366440 ID=MsG0580025900.01.T02:cds;Parent=MsG0580025900.01.T02
Gene Sequence

>MsG0580025900.01.T01

ATGGGAGAGACAACAGCATCAAATTCTGCTTTGCAAGTGTCTGTTTCTTTTGGTAGATTTGATAATGATTCACTGTCATGGGAGAGATGGTCTTCATTCTCTCCAAATAAGTATTTGGAAGAAGTTGAGAAGTGTGCTACACCTGGATCAGTAGCACAGAAGAAAGCTTACTTTGAAGCTCATTACAAGAAGATTGCGGCCCGGAAAGCCGAATTGTTGGCTCAAGAGAAGGAGATGGAGAGGGAGAGGGATTCTTTCAGATCAGAAGAAAATAATGGTATAGATCTGAGCGGTAATGGTAACGGTAACAGTAACGCCTGTGAGACTGATTCGGAATTCGGTATTTCCAACACTCAAGGTAGTTGTACCGAGGAACGCGATAAGCAAGAAATTGAAATCAGCCCGGTTGGTGAAATCAGCAGGAGTCATGCGGATGATTTGAAGGAGGAGGAGGAAGTTGCGGTTTCGGTAGATTACCAAAGTTCATCAGTTGAGGTGGAGAATAAAGAGGTGGAAAGTGGATCACATGGTTCGTACAAGATAGACGAACCTGAAAAAGACGTGTGCATAAAAATAGAAGAAATTCTTGACGTTGAAGCTGAAGATGTGAAGGAAATTTCTCATGTTGTGTACAAAGAGACAGAAAAGGCTTCACAAGTTGAAGAAAAAGATGTGAAATTGGATCATCCAAAGAAATCTAAGGTTATCCCTGTGAATAGGGAAAATAATGCAGCCAAAACAAAGAAGAAACCAGTGGCAGCAAAACCTAAGGCATCTCAAATTTCGACACCGAGAAGTTCAAAGCCTACATCAGCTCCAACTAAAACATTGGCATCTGCCGCTTCAACTAAAAAGGGAAATCCGCAGTCCTTACCTAGGAGGCAAGTTACTTCTAGTGTGGAGAACAAAAAAGTCGCGACCAGATCTTTGCACATGTCTATGAGCTTAGGTCCAAGTAAGCCTGATCCAGTTCCTCATACTACTGAACCAGTTCCTCGTACTATGAGGAAATCTCTCATTATGGATAGTATGGGGGATAAGGACATAGTCAAACGAGCATTTAAGACTTTCCAGAAGAATTTTAACCAGCCAAAAACTTCCGTTGAAGAAGACAGATCGTCGGTAAAACAGCAGGCTCCTTCAAGGGGGACTGCGTCAAAGGTTCCAACTTCTTCAACTTTGCGGAAAGAAAATGGAAGGTAA

>MsG0580025900.01.T02

ATGGGAGAGACAACAGCATCAAATTCTGCTTTGCAAGTGTCTGTTTCTTTTGGTAGATTTGATAATGATTCACTGTCATGGGAGAGATGGTCTTCATTCTCTCCAAATAAGTATTTGGAAGAAGTTGAGAAGTGTGCTACACCTGGATCAGTAGCACAGAAGAAAGCTTACTTTGAAGCTCATTACAAGAAGATTGCGGCCCGGAAAGCCGAATTGTTGGCTCAAGAGAAGGAGATGGAGAGGGAGAGGGATTCTTTCAGATCAGAAGAAAATAATGGTATAGATCTGAGCGGTAATGGTAACGGTAACAGTAACGCCTGTGAGACTGATTCGGAATTCGGTATTTCCAACACTCAAGGTAGTTGTACCGAGGAACGCGATAAGCAAGAAATTGAAATCAGCCCGGTTGGTGAAATCAGCAGGAGTCATGCGGATGATTTGAAGGAGGAGGAGGAAGTTGCGGTTTCGGTAGATTACCAAAGTTCATCAGTTGAGGTGGAGAATAAAGAGGTGGAAAGTGGATCACATGGTTCGTACAAGATAGACGAACCTGAAAAAGACGTGTGCATAAAAATAGAAGAAATTCTTGACGTTGAAGCTGAAGATGTGAAGGAAATTTCTCATGTTGTGTACAAAGAGACAGAAAAGGCTTCACAAGTTGAAGAAAAAGATGTGAAATTGGATCATCCAAAGAAATCTAAGGTTATCCCTGTGAATAGGGAAAATAATGCAGCCAAAACAAAGAAGAAACCAGTGGCAGCAAAACCTAAGGCATCTCAAATTTCGACACCGAGAAGTTCAAAGCCTACATCAGCTCCAACTAAAACATTGGCATCTGCCGCTTCAACTAAAAAGGGAAATCCGCAGTCCTTACCTAGGAGGCAAGTTACTTCTAGTGTGGAGAACAAAAAAGTCGCGACCAGATCTTTGCACATGTCTATGAGCTTAGGTCCAAGTAAGCCTGATCCAGTTCCTCATACTACTGAACCAGTTCCTCGTACTATGAGGAAATCTCTCATTATGGATAGTATGGGGGATAAGGACATAGTCAAACGAGCATTTAAGACTTTCCAGAAGAATTTTAACCAGCCAAAAACTTCCGTTGAAGAAGACAGATCGTCGGTAAAACAGCAGGCTCCTTCAAGGGGGACTGCGTCAAAGGTTCCAACTTCTTCAACTTTGCGGAAAGAAAATGGAAGGTAA

Protein sequence

>MsG0580025900.01.T01

MGETTASNSALQVSVSFGRFDNDSLSWERWSSFSPNKYLEEVEKCATPGSVAQKKAYFEAHYKKIAARKAELLAQEKEMERERDSFRSEENNGIDLSGNGNGNSNACETDSEFGISNTQGSCTEERDKQEIEISPVGEISRSHADDLKEEEEVAVSVDYQSSSVEVENKEVESGSHGSYKIDEPEKDVCIKIEEILDVEAEDVKEISHVVYKETEKASQVEEKDVKLDHPKKSKVIPVNRENNAAKTKKKPVAAKPKASQISTPRSSKPTSAPTKTLASAASTKKGNPQSLPRRQVTSSVENKKVATRSLHMSMSLGPSKPDPVPHTTEPVPRTMRKSLIMDSMGDKDIVKRAFKTFQKNFNQPKTSVEEDRSSVKQQAPSRGTASKVPTSSTLRKENGR*

>MsG0580025900.01.T02

MGETTASNSALQVSVSFGRFDNDSLSWERWSSFSPNKYLEEVEKCATPGSVAQKKAYFEAHYKKIAARKAELLAQEKEMERERDSFRSEENNGIDLSGNGNGNSNACETDSEFGISNTQGSCTEERDKQEIEISPVGEISRSHADDLKEEEEVAVSVDYQSSSVEVENKEVESGSHGSYKIDEPEKDVCIKIEEILDVEAEDVKEISHVVYKETEKASQVEEKDVKLDHPKKSKVIPVNRENNAAKTKKKPVAAKPKASQISTPRSSKPTSAPTKTLASAASTKKGNPQSLPRRQVTSSVENKKVATRSLHMSMSLGPSKPDPVPHTTEPVPRTMRKSLIMDSMGDKDIVKRAFKTFQKNFNQPKTSVEEDRSSVKQQAPSRGTASKVPTSSTLRKENGR*