AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031114.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031114.01.T01 MTR_6g016590 97.297 37 1 0 50 86 175 211 3.08e-16 74.7
MsG0680031114.01.T01 MTR_6g016590 96.667 30 1 0 104 133 302 331 9.42e-13 64.7
MsG0680031114.01.T01 MTR_6g016590 89.286 28 3 0 1 28 1 28 8.78e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031114.01.T01 AT3G02460 45.985 137 21 6 50 133 176 312 1.74e-19 83.6
MsG0680031114.01.T01 AT3G02460 57.143 77 25 3 50 122 176 248 7.13e-16 73.2
MsG0680031114.01.T01 AT3G02460 57.143 77 25 3 50 122 176 248 8.78e-16 73.2
MsG0680031114.01.T01 AT3G02460 57.895 76 24 3 50 121 176 247 9.84e-16 73.2
MsG0680031114.01.T01 AT3G02460 96.875 32 1 0 104 135 303 334 2.34e-13 66.6
MsG0680031114.01.T01 AT3G02460 57.895 76 24 3 50 121 176 247 1.20e-15 73.2
MsG0680031114.01.T01 AT3G02460 96.667 30 1 0 104 133 303 332 4.48e-12 62.8
MsG0680031114.01.T01 AT5G15930 88.889 36 4 0 50 85 173 208 1.38e-14 70.1
MsG0680031114.01.T01 AT5G15930 86.667 30 4 0 104 133 300 329 6.69e-11 59.7

Find 46 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTGGTGGCATTACTTAA+AGG 0.308020 6:-14690110 MsG0680031114.01.T01:CDS
CCCAATGGAGGGACTCTATC+TGG 0.318018 6:-14690075 MsG0680031114.01.T01:intron
AAGCTATGCCATTGGTGTTC+TGG 0.330570 6:-14691044 MsG0680031114.01.T01:five_prime_UTR
TGAGCGAGGAGGATGCATTT+TGG 0.339928 6:-14690133 MsG0680031114.01.T01:CDS
ATAGGTTTGGGTTTATAAAC+AGG 0.340853 6:-14690932 MsG0680031114.01.T01:CDS
CAAGAGCGTTGGATAGGTTT+GGG 0.343604 6:-14690944 MsG0680031114.01.T01:CDS
CCAAGAGCGTTGGATAGGTT+TGG 0.347993 6:-14690945 MsG0680031114.01.T01:CDS
CTTGGTGAAGGAACTGGACT+TGG 0.391535 6:+14690963 None:intergenic
TCAATTAAAATCCAGGGAAT+GGG 0.406730 6:-14690184 MsG0680031114.01.T01:intron
AACGCTCTTGGTGAAGGAAC+TGG 0.418783 6:+14690957 None:intergenic
CCAGATAGAGTCCCTCCATT+GGG 0.420572 6:+14690075 None:intergenic
TCAGGATTCATTGCATCCTC+AGG 0.454288 6:+14688813 None:intergenic
GTTGACAAACAAAAGGCAAA+TGG 0.457940 6:+14688727 None:intergenic
CTTTGATGTTGACAAACAAA+AGG 0.464071 6:+14688720 None:intergenic
TCCCTCCATTGGGGCGTGAA+CGG 0.470882 6:+14690085 None:intergenic
TCCTGACACGTTATTGCCGC+TGG 0.476954 6:-14688796 MsG0680031114.01.T01:CDS
AACCTCGGAATTGGAAATGA+AGG 0.489808 6:+14692794 None:intergenic
GCCAGCGGCAATAACGTGTC+AGG 0.491734 6:+14688795 None:intergenic
ACCAGATAGAGTCCCTCCAT+TGG 0.500607 6:+14690074 None:intergenic
AGGAAGGAAGAGAACCTTGA+TGG 0.502239 6:+14688767 None:intergenic
CCAAACCTATCCAACGCTCT+TGG 0.511402 6:+14690945 None:intergenic
CTTCACCAAGAGCGTTGGAT+AGG 0.519596 6:-14690950 MsG0680031114.01.T01:CDS
GCCGCTGGCTTATTCCATCA+AGG 0.523342 6:-14688781 MsG0680031114.01.T01:CDS
GCCGTTCACGCCCCAATGGA+GGG 0.536581 6:-14690086 MsG0680031114.01.T01:CDS
AGCCGTTCACGCCCCAATGG+AGG 0.537817 6:-14690087 MsG0680031114.01.T01:CDS
ATGGAAGAAGAAGAAACGAT+TGG 0.539277 6:+14692825 None:intergenic
AGTTCCTTCACCAAGAGCGT+TGG 0.544965 6:-14690955 MsG0680031114.01.T01:CDS
GGAAATGAAGGTTCGATCGA+TGG 0.549781 6:+14692806 None:intergenic
TGGACTTGGTTCATAGTCAT+CGG 0.551972 6:+14690977 None:intergenic
AACCTTCATTTCCAATTCCG+AGG 0.553702 6:-14692796 MsG0680031114.01.T01:five_prime_UTR
TTTCATCATTCACATTTACA+AGG 0.561701 6:-14692735 MsG0680031114.01.T01:intron
TTTGCTTCTTTATATGAGCG+AGG 0.566953 6:-14690147 MsG0680031114.01.T01:CDS
AGGAGCCGTTCACGCCCCAA+TGG 0.569296 6:-14690090 MsG0680031114.01.T01:CDS
CAATTAAAATCCAGGGAATG+GGG 0.569707 6:-14690183 MsG0680031114.01.T01:intron
TTCTAAAACCAGAACACCAA+TGG 0.575942 6:+14691036 None:intergenic
ACGGAGGCAAGCTATGCCAT+TGG 0.579270 6:-14691052 MsG0680031114.01.T01:five_prime_UTR
CTATCCAACGCTCTTGGTGA+AGG 0.580925 6:+14690951 None:intergenic
ACAGGATGCTAACACTTCTG+AGG 0.590106 6:-14690914 MsG0680031114.01.T01:CDS
CAGGATGCTAACACTTCTGA+GGG 0.591920 6:-14690913 MsG0680031114.01.T01:CDS
AATAAGTTAAACGCAGAGGA+AGG 0.594561 6:+14688751 None:intergenic
TGTCATTGTAATGTTTACGG+AGG 0.629157 6:-14691068 MsG0680031114.01.T01:five_prime_UTR
CAGGATTCATTGCATCCTCA+GGG 0.632655 6:+14688814 None:intergenic
CAGATAGAGTCCCTCCATTG+GGG 0.637651 6:+14690076 None:intergenic
TGGAAATAAGTTAAACGCAG+AGG 0.645394 6:+14688747 None:intergenic
GCTTCTTTATATGAGCGAGG+AGG 0.660085 6:-14690144 MsG0680031114.01.T01:CDS
ACCTTGATGGAATAAGCCAG+CGG 0.706325 6:+14688780 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTGATTTTTTTAAAATTTT+GGG + Chr6:14691641-14691660 None:intergenic 10.0%
!!! TCTTGATTTTTTTAAAATTT+TGG + Chr6:14691642-14691661 None:intergenic 10.0%
!!! TTTATTTGATTTTCAATTTT+GGG - Chr6:14688862-14688881 MsG0680031114.01.T01:CDS 10.0%
!!! TTTTATTAAAGTATAAGATA+AGG - Chr6:14690257-14690276 MsG0680031114.01.T01:intron 10.0%
!!! TTTTATTTGATTTTCAATTT+TGG - Chr6:14688861-14688880 MsG0680031114.01.T01:CDS 10.0%
!! AAACTAAAATAGAAACTATT+AGG - Chr6:14689892-14689911 MsG0680031114.01.T01:intron 15.0%
!! AAATATTTAAATTAGATGCA+TGG - Chr6:14691610-14691629 MsG0680031114.01.T01:intron 15.0%
!! AAATGAACAATATAACAAAA+GGG + Chr6:14688899-14688918 None:intergenic 15.0%
!! AACAATAATTGTGATAAAAA+AGG + Chr6:14692255-14692274 None:intergenic 15.0%
!! ATATTGTTCATTTCATAATT+AGG - Chr6:14688906-14688925 MsG0680031114.01.T01:intron 15.0%
!! TAATAAACTAATAAACCTAT+AGG + Chr6:14689624-14689643 None:intergenic 15.0%
!! TACATTAATTAAGATCAATT+TGG + Chr6:14690159-14690178 None:intergenic 15.0%
!! TATATGTCAATCAAAATTAT+CGG + Chr6:14690063-14690082 None:intergenic 15.0%
!!! GTTAAAATTGTTTTTAAAGT+TGG - Chr6:14692566-14692585 MsG0680031114.01.T01:intron 15.0%
!! AAAAACCTAATGTTGTTAAA+AGG - Chr6:14690882-14690901 MsG0680031114.01.T01:CDS 20.0%
!! AAAACATATGTTATAAGAGA+AGG + Chr6:14691571-14691590 None:intergenic 20.0%
!! AATCAAAATAAACGAATTCA+AGG + Chr6:14691520-14691539 None:intergenic 20.0%
!! ACAAACTTATTAACATATCT+TGG + Chr6:14691676-14691695 None:intergenic 20.0%
!! ACTTAACTACAAAATGAAAT+TGG + Chr6:14690235-14690254 None:intergenic 20.0%
!! ATATTGATCAATTAAAATCC+AGG - Chr6:14691367-14691386 MsG0680031114.01.T01:intron 20.0%
!! ATTAAAATTAGATACTGTCT+GGG - Chr6:14692106-14692125 MsG0680031114.01.T01:intron 20.0%
!! ATTAATTAAATGCAATCACA+TGG - Chr6:14689295-14689314 MsG0680031114.01.T01:intron 20.0%
!! ATTAATTAAGATCAATTTGG+AGG + Chr6:14690156-14690175 None:intergenic 20.0%
!! GAAATGAACAATATAACAAA+AGG + Chr6:14688900-14688919 None:intergenic 20.0%
!! TAATGAGTTAGATAGAAATA+TGG - Chr6:14689929-14689948 MsG0680031114.01.T01:intron 20.0%
!! TACATTATACCTCAATATAA+AGG + Chr6:14689508-14689527 None:intergenic 20.0%
!! TATTGATCAATTAAAATCCA+GGG - Chr6:14691368-14691387 MsG0680031114.01.T01:intron 20.0%
!! TGATTGACATATATCATATA+AGG - Chr6:14690070-14690089 MsG0680031114.01.T01:intron 20.0%
!! TTAATTAAGATCAATTTGGA+GGG + Chr6:14690155-14690174 None:intergenic 20.0%
!! TTTATATTGAGGTATAATGT+AGG - Chr6:14689507-14689526 MsG0680031114.01.T01:intron 20.0%
!!! GTTTCTATTTTAGTTTTTCT+AGG + Chr6:14689888-14689907 None:intergenic 20.0%
!!! TTTGCATAAATGTTTTTTTC+TGG - Chr6:14690456-14690475 MsG0680031114.01.T01:intron 20.0%
!!! TTTTGTCATTGTAATGTTTA+CGG - Chr6:14690487-14690506 MsG0680031114.01.T01:intron 20.0%
! AATATAACAAAAGGGTCAAA+AGG + Chr6:14688891-14688910 None:intergenic 25.0%
! AGAAAGATATGTTCTGATAT+AGG + Chr6:14691971-14691990 None:intergenic 25.0%
! ATATAACAAAAGGGTCAAAA+GGG + Chr6:14688890-14688909 None:intergenic 25.0%
! CATTAAAATTAGATACTGTC+TGG - Chr6:14692105-14692124 MsG0680031114.01.T01:intron 25.0%
! CTTTCTTTGTATTATGGTTA+TGG - Chr6:14690292-14690311 MsG0680031114.01.T01:intron 25.0%
! GACATATATCATATAAGGTT+TGG - Chr6:14690075-14690094 MsG0680031114.01.T01:intron 25.0%
! TACAATAGTTAGGATCAATT+TGG + Chr6:14690346-14690365 None:intergenic 25.0%
! TATATCATATAAGGTTTGGA+AGG - Chr6:14690079-14690098 MsG0680031114.01.T01:CDS 25.0%
! TATGCTTGATAAATTGACTA+AGG + Chr6:14689657-14689676 None:intergenic 25.0%
! TGGTTTATACTTGAACATTA+TGG + Chr6:14689234-14689253 None:intergenic 25.0%
! TTTCAAATTTGTCAAAGTAC+CGG + Chr6:14692181-14692200 None:intergenic 25.0%
! TTTCATCATTCACATTTACA+AGG - Chr6:14688823-14688842 MsG0680031114.01.T01:CDS 25.0%
!! ACGTGTTATTATTGAAAGTA+GGG - Chr6:14691803-14691822 MsG0680031114.01.T01:intron 25.0%
!! GATGAAAAAGTGAAGATTTT+TGG + Chr6:14688810-14688829 None:intergenic 25.0%
!! TACGTGTTATTATTGAAAGT+AGG - Chr6:14691802-14691821 MsG0680031114.01.T01:intron 25.0%
!! TCTATCTTTTGTCAGAATTA+AGG - Chr6:14690786-14690805 MsG0680031114.01.T01:intron 25.0%
!! TGGTTACTTTCTTTGTATTA+TGG - Chr6:14690286-14690305 MsG0680031114.01.T01:intron 25.0%
!! TTTTGTCTGAATAAGTTAAC+TGG + Chr6:14691010-14691029 None:intergenic 25.0%
!!! AAATGTTTTTTTCTGGTTTC+AGG - Chr6:14690463-14690482 MsG0680031114.01.T01:intron 25.0%
!!! AATTGTTTTTAAAGTTGGCT+TGG - Chr6:14692571-14692590 MsG0680031114.01.T01:intron 25.0%
!!! TAAAAACAATTTTAACACCC+TGG + Chr6:14692562-14692581 None:intergenic 25.0%
!!! TATTGTTCTATTTTGAATGC+AGG - Chr6:14692268-14692287 MsG0680031114.01.T01:intron 25.0%
!!! TTCTAACTGTAGTTTTACAA+TGG - Chr6:14691880-14691899 MsG0680031114.01.T01:intron 25.0%
AAATACAGTTTATGAACCAC+TGG + Chr6:14692410-14692429 None:intergenic 30.0%
AAGATATGTTCTGATATAGG+TGG + Chr6:14691968-14691987 None:intergenic 30.0%
AAGGAATTCCTGATTGTTTA+AGG - Chr6:14690915-14690934 MsG0680031114.01.T01:CDS 30.0%
AATGACATTCTATCTTTCCA+GGG - Chr6:14692542-14692561 MsG0680031114.01.T01:intron 30.0%
ACTGCAGTTATACAATAGTT+AGG + Chr6:14690356-14690375 None:intergenic 30.0%
AGATATGTTCTGATATAGGT+GGG + Chr6:14691967-14691986 None:intergenic 30.0%
AGGAATTCCTGATTGTTTAA+GGG - Chr6:14690916-14690935 MsG0680031114.01.T01:CDS 30.0%
AGTATAAGATAAGGTTCAGA+TGG - Chr6:14690266-14690285 MsG0680031114.01.T01:intron 30.0%
ATAATGCTAATTGCAGCAAT+TGG - Chr6:14691124-14691143 MsG0680031114.01.T01:intron 30.0%
ATATAATTCGAGACATTTCC+CGG - Chr6:14691176-14691195 MsG0680031114.01.T01:intron 30.0%
ATCAATTAAAATCCAGGGAA+TGG - Chr6:14691373-14691392 MsG0680031114.01.T01:intron 30.0%
ATCATGGCAGTACTTTAATA+GGG + Chr6:14692597-14692616 None:intergenic 30.0%
ATGACAGTTATGTTTATAGG+TGG - Chr6:14692066-14692085 MsG0680031114.01.T01:intron 30.0%
CAAGAATTATCGTACATGAA+CGG - Chr6:14692136-14692155 MsG0680031114.01.T01:intron 30.0%
CACCTGTAGATTATGTAATA+AGG - Chr6:14689820-14689839 MsG0680031114.01.T01:intron 30.0%
CAGATGACAGTTATGTTTAT+AGG - Chr6:14692063-14692082 MsG0680031114.01.T01:intron 30.0%
CTACAAAATGAAATTGGCTA+AGG + Chr6:14690229-14690248 None:intergenic 30.0%
CTATAAACATAACTGTCATC+TGG + Chr6:14692065-14692084 None:intergenic 30.0%
CTCCTTATTACATAATCTAC+AGG + Chr6:14689825-14689844 None:intergenic 30.0%
CTTTCTTTGTGTTATGGTTA+TGG - Chr6:14690105-14690124 MsG0680031114.01.T01:CDS 30.0%
CTTTGATGTTGACAAACAAA+AGG + Chr6:14692841-14692860 None:intergenic 30.0%
GCTAGGATTTATCATTTCTT+CGG + Chr6:14692377-14692396 None:intergenic 30.0%
GTAAAATGTTCTCCTAACTT+CGG + Chr6:14692355-14692374 None:intergenic 30.0%
GTATAATCTCAGATTGTGTA+TGG - Chr6:14688973-14688992 MsG0680031114.01.T01:intron 30.0%
TAACAAGCAGAAAAAAGTGA+CGG + Chr6:14691326-14691345 None:intergenic 30.0%
TAATTGAAACTGCAGTCAAT+TGG + Chr6:14691921-14691940 None:intergenic 30.0%
TCAATTAAAATCCAGGGAAT+GGG - Chr6:14691374-14691393 MsG0680031114.01.T01:intron 30.0%
! AAAGTCTTATCCTAGTAAGT+GGG - Chr6:14689184-14689203 MsG0680031114.01.T01:intron 30.0%
! AACATTAGGTTTTTCTCCTT+AGG + Chr6:14690876-14690895 None:intergenic 30.0%
! AGGTTACTTTCTTTGTGTTA+TGG - Chr6:14690099-14690118 MsG0680031114.01.T01:CDS 30.0%
! ATACGCCTTTTAACAACATT+AGG + Chr6:14690890-14690909 None:intergenic 30.0%
! ATACTTTTGTACGCTACAAA+TGG + Chr6:14692511-14692530 None:intergenic 30.0%
! ATAGGTTTGGGTTTATAAAC+AGG - Chr6:14690626-14690645 MsG0680031114.01.T01:intron 30.0%
! ATCTTTTGTCAGAATTAAGG+AGG - Chr6:14690789-14690808 MsG0680031114.01.T01:intron 30.0%
! ATGTTGTTAAAAGGCGTATA+AGG - Chr6:14690891-14690910 MsG0680031114.01.T01:CDS 30.0%
! GTTTTCTACGAGTAAAGATT+TGG - Chr6:14691586-14691605 MsG0680031114.01.T01:intron 30.0%
! TCTTTTGTCAGAATTAAGGA+GGG - Chr6:14690790-14690809 MsG0680031114.01.T01:intron 30.0%
! TTATTGGTGGCATTACTTAA+AGG - Chr6:14691448-14691467 MsG0680031114.01.T01:intron 30.0%
!! AAAGTGAAGATTTTTGGATG+TGG + Chr6:14688804-14688823 None:intergenic 30.0%
!! AAGCTTTAGAACATTGTAGA+GGG + Chr6:14691253-14691272 None:intergenic 30.0%
!! AAGTGAAGATTTTTGGATGT+GGG + Chr6:14688803-14688822 None:intergenic 30.0%
!! GCTAATTTGTGGTTTTTGAA+TGG - Chr6:14690546-14690565 MsG0680031114.01.T01:intron 30.0%
!! TAAGCTTTAGAACATTGTAG+AGG + Chr6:14691254-14691273 None:intergenic 30.0%
!! TCACAATACAAAGGTTTTAG+AGG + Chr6:14689546-14689565 None:intergenic 30.0%
!!! GGTTTTAGAATGCTAATTTG+TGG - Chr6:14690535-14690554 MsG0680031114.01.T01:intron 30.0%
AAAATGGAGGAAGATGATTG+GGG - Chr6:14690825-14690844 MsG0680031114.01.T01:intron 35.0%
AACAAGCAGAAAAAAGTGAC+GGG + Chr6:14691325-14691344 None:intergenic 35.0%
AATAAGTTAAACGCAGAGGA+AGG + Chr6:14692810-14692829 None:intergenic 35.0%
ACATAACTGTCATCTGGATA+CGG + Chr6:14692059-14692078 None:intergenic 35.0%
AGAAAATGGAGGAAGATGAT+TGG - Chr6:14690823-14690842 MsG0680031114.01.T01:intron 35.0%
AGTTACTTCGTAATTGAGAG+TGG - Chr6:14689443-14689462 MsG0680031114.01.T01:intron 35.0%
ATATGTTCTGATATAGGTGG+GGG + Chr6:14691965-14691984 None:intergenic 35.0%
ATGACAACATTAGAGAGAGT+TGG - Chr6:14689732-14689751 MsG0680031114.01.T01:intron 35.0%
ATGATACTTACCAGTCATCA+TGG + Chr6:14692613-14692632 None:intergenic 35.0%
ATGGAAGAAGAAGAAACGAT+TGG + Chr6:14688736-14688755 None:intergenic 35.0%
CAATGACATTCTATCTTTCC+AGG - Chr6:14692541-14692560 MsG0680031114.01.T01:intron 35.0%
CAATTAAAATCCAGGGAATG+GGG - Chr6:14691375-14691394 MsG0680031114.01.T01:intron 35.0%
CATCATGGCAGTACTTTAAT+AGG + Chr6:14692598-14692617 None:intergenic 35.0%
CGGCAAAATGAAATTGACTA+AGG + Chr6:14690043-14690062 None:intergenic 35.0%
CTTGTTTGGCAGTTAATATC+TGG - Chr6:14690940-14690959 MsG0680031114.01.T01:CDS 35.0%
GAAAATGGAGGAAGATGATT+GGG - Chr6:14690824-14690843 MsG0680031114.01.T01:intron 35.0%
GACTGCAGTTTCAATTACAA+TGG - Chr6:14691924-14691943 MsG0680031114.01.T01:intron 35.0%
GATATGTTCTGATATAGGTG+GGG + Chr6:14691966-14691985 None:intergenic 35.0%
GGAATTCCTGATTGTTTAAG+GGG - Chr6:14690917-14690936 MsG0680031114.01.T01:CDS 35.0%
GTTGACAAACAAAAGGCAAA+TGG + Chr6:14692834-14692853 None:intergenic 35.0%
TAATGTTTGATCATCAGCAC+TGG - Chr6:14689254-14689273 MsG0680031114.01.T01:intron 35.0%
TATCAGATAGTGTCATACTC+CGG - Chr6:14692159-14692178 MsG0680031114.01.T01:intron 35.0%
TATGGTTATGGCATAACACA+GGG - Chr6:14690304-14690323 MsG0680031114.01.T01:intron 35.0%
TCAGTATTTGAAAGAGACGT+AGG - Chr6:14691275-14691294 MsG0680031114.01.T01:intron 35.0%
TGACAACATTAGAGAGAGTT+GGG - Chr6:14689733-14689752 MsG0680031114.01.T01:intron 35.0%
TGCTGGAAAATACATGTGAA+GGG + Chr6:14691207-14691226 None:intergenic 35.0%
TGGAAATAAGTTAAACGCAG+AGG + Chr6:14692814-14692833 None:intergenic 35.0%
TGTCATTGTAATGTTTACGG+AGG - Chr6:14690490-14690509 MsG0680031114.01.T01:intron 35.0%
TTATCAAGCATAACGAGATG+AGG - Chr6:14689665-14689684 MsG0680031114.01.T01:intron 35.0%
TTATGGTTATGGCATAACAC+AGG - Chr6:14690303-14690322 MsG0680031114.01.T01:intron 35.0%
TTGCTGGAAAATACATGTGA+AGG + Chr6:14691208-14691227 None:intergenic 35.0%
TTTGCTTCTTTATATGAGCG+AGG - Chr6:14691411-14691430 MsG0680031114.01.T01:intron 35.0%
! AAGCCTTATCCCACTAAATA+GGG + Chr6:14689998-14690017 None:intergenic 35.0%
! AAGTCTTATCCTAGTAAGTG+GGG - Chr6:14689185-14689204 MsG0680031114.01.T01:intron 35.0%
! AATTGCAAGTTTTCACCACA+TGG - Chr6:14691846-14691865 MsG0680031114.01.T01:intron 35.0%
! ATATCCTTCAGTTTGAAGCA+TGG - Chr6:14689343-14689362 MsG0680031114.01.T01:intron 35.0%
! CAAAGTCTTATCCTAGTAAG+TGG - Chr6:14689183-14689202 MsG0680031114.01.T01:intron 35.0%
! CTTTTGTCAGAATTAAGGAG+GGG - Chr6:14690791-14690810 MsG0680031114.01.T01:intron 35.0%
! GGACCGCAATTTAAAACTAT+GGG - Chr6:14689582-14689601 MsG0680031114.01.T01:intron 35.0%
! GTGCTGATGATCAAACATTA+TGG + Chr6:14689254-14689273 None:intergenic 35.0%
! GTTAAAAGGCGTATAAGGAA+AGG - Chr6:14690896-14690915 MsG0680031114.01.T01:CDS 35.0%
! TAAGCCTTATCCCACTAAAT+AGG + Chr6:14689999-14690018 None:intergenic 35.0%
! TGGACCGCAATTTAAAACTA+TGG - Chr6:14689581-14689600 MsG0680031114.01.T01:intron 35.0%
! TGGTATACGATAGAGCATTA+TGG - Chr6:14689949-14689968 MsG0680031114.01.T01:intron 35.0%
! TGTATTTTCCAGCAAAGACA+TGG - Chr6:14691213-14691232 MsG0680031114.01.T01:intron 35.0%
! TTGTTTTCTGCTTGCTTATC+AGG - Chr6:14692679-14692698 MsG0680031114.01.T01:intron 35.0%
!! TTCTAAAACCAGAACACCAA+TGG + Chr6:14690525-14690544 None:intergenic 35.0%
!!! ACAAAGGTTTTAGAGGTCTT+TGG + Chr6:14689539-14689558 None:intergenic 35.0%
!!! ATCCTCAGGGAAGTTTTTTA+AGG + Chr6:14692734-14692753 None:intergenic 35.0%
!!! CCACCCATAGTTTTAAATTG+CGG + Chr6:14689588-14689607 None:intergenic 35.0%
AAACTGCAGTCAATTGGACT+TGG + Chr6:14691915-14691934 None:intergenic 40.0%
AACAAGCCCCTTAAACAATC+AGG + Chr6:14690926-14690945 None:intergenic 40.0%
AACCTCGGAATTGGAAATGA+AGG + Chr6:14688767-14688786 None:intergenic 40.0%
AACCTTCATTTCCAATTCCG+AGG - Chr6:14688762-14688781 MsG0680031114.01.T01:CDS 40.0%
AAGAGACGTAGGATATGTTC+AGG - Chr6:14691286-14691305 MsG0680031114.01.T01:intron 40.0%
AAGGAGAGTAGATCAGATGA+AGG - Chr6:14689839-14689858 MsG0680031114.01.T01:intron 40.0%
AAGGGTAGTCAAATCACTAG+AGG - Chr6:14689858-14689877 MsG0680031114.01.T01:intron 40.0%
AATGGAACTTGGAGAAACTG+TGG + Chr6:14692493-14692512 None:intergenic 40.0%
ACCAAGCGTTCAATTGAAAG+AGG + Chr6:14692319-14692338 None:intergenic 40.0%
ACCTATAGCACAAAAGATGG+TGG - Chr6:14689761-14689780 MsG0680031114.01.T01:intron 40.0%
ACCTCTTTCAATTGAACGCT+TGG - Chr6:14692315-14692334 MsG0680031114.01.T01:intron 40.0%
AGAAGCTTCATGTTACCATG+TGG + Chr6:14691864-14691883 None:intergenic 40.0%
AGGAGAGTAGATCAGATGAA+GGG - Chr6:14689840-14689859 MsG0680031114.01.T01:intron 40.0%
ATACATGTGAAGGGAAAGTC+CGG + Chr6:14691198-14691217 None:intergenic 40.0%
CAATTGCGGTCACAATACAA+AGG + Chr6:14689555-14689574 None:intergenic 40.0%
CCTATAGCACAAAAGATGGT+GGG - Chr6:14689762-14689781 MsG0680031114.01.T01:intron 40.0%
CTGACAAAAGATAGACGACA+AGG + Chr6:14690781-14690800 None:intergenic 40.0%
CTTATCCCACTAAATAGGGT+CGG + Chr6:14689994-14690013 None:intergenic 40.0%
GAAACCATGCTTCAAACTGA+AGG + Chr6:14689350-14689369 None:intergenic 40.0%
GAAACTAGGTTTAGGTGGTT+GGG - Chr6:14689784-14689803 MsG0680031114.01.T01:intron 40.0%
GACAACATTAGAGAGAGTTG+GGG - Chr6:14689734-14689753 MsG0680031114.01.T01:intron 40.0%
GATGTGTGGTAAAACTAGAC+TGG - Chr6:14689697-14689716 MsG0680031114.01.T01:intron 40.0%
GTTTGGAAAAACCTCGGAAT+TGG + Chr6:14688776-14688795 None:intergenic 40.0%
TACTTCGTAATTGAGAGTGG+TGG - Chr6:14689446-14689465 MsG0680031114.01.T01:intron 40.0%
TATGGTTATGGCACAGGAAA+GGG - Chr6:14690117-14690136 MsG0680031114.01.T01:CDS 40.0%
TCAATGCAAACCGACAAATG+TGG + Chr6:14691100-14691119 None:intergenic 40.0%
TCAATTGGACTTGGAACATG+CGG + Chr6:14691906-14691925 None:intergenic 40.0%
TCGTATTCCTTTCCTTCCAT+TGG - Chr6:14692430-14692449 MsG0680031114.01.T01:intron 40.0%
TGCCTTAAAAAACTTCCCTG+AGG - Chr6:14692729-14692748 MsG0680031114.01.T01:intron 40.0%
TGTACGCTACAAATGGAACT+TGG + Chr6:14692504-14692523 None:intergenic 40.0%
TTATGGTTATGGCACAGGAA+AGG - Chr6:14690116-14690135 MsG0680031114.01.T01:CDS 40.0%
TTGTGTTATGGTTATGGCAC+AGG - Chr6:14690111-14690130 MsG0680031114.01.T01:CDS 40.0%
! CCGCAATTTAAAACTATGGG+TGG - Chr6:14689585-14689604 MsG0680031114.01.T01:intron 40.0%
! GATTGTTTAAGGGGCTTGTT+TGG - Chr6:14690926-14690945 MsG0680031114.01.T01:CDS 40.0%
! GGTGTAAGTTTTGCTCCTAT+AGG - Chr6:14689606-14689625 MsG0680031114.01.T01:intron 40.0%
! TGGACTTGGTTCATAGTCAT+CGG + Chr6:14690584-14690603 None:intergenic 40.0%
! TTCAATTGAACGCTTGGTGA+GGG - Chr6:14692321-14692340 MsG0680031114.01.T01:intron 40.0%
! TTTCAATTGAACGCTTGGTG+AGG - Chr6:14692320-14692339 MsG0680031114.01.T01:intron 40.0%
!! AAGATTTTTGGATGTGGGTG+TGG + Chr6:14688798-14688817 None:intergenic 40.0%
!! ACAAAAGATGGTGGGAAACT+AGG - Chr6:14689770-14689789 MsG0680031114.01.T01:intron 40.0%
!! GTGATTGGAAGCATTACCTA+AGG - Chr6:14690857-14690876 MsG0680031114.01.T01:intron 40.0%
!! GTTCTATTTTGAATGCAGGC+AGG - Chr6:14692272-14692291 MsG0680031114.01.T01:intron 40.0%
!! TAAAGTACTGCCATGATGAC+TGG - Chr6:14692600-14692619 MsG0680031114.01.T01:intron 40.0%
!!! GGAGGATGCATTTTGGTTAT+TGG - Chr6:14691432-14691451 MsG0680031114.01.T01:intron 40.0%
!!! GGATGCATTTTGGTTATTGG+TGG - Chr6:14691435-14691454 MsG0680031114.01.T01:intron 40.0%
AACATTAGAGAGAGTTGGGG+TGG - Chr6:14689737-14689756 MsG0680031114.01.T01:intron 45.0%
ACAGGATGCTAACACTTCTG+AGG - Chr6:14690644-14690663 MsG0680031114.01.T01:intron 45.0%
ACCTTGATGGAATAAGCCAG+CGG + Chr6:14692781-14692800 None:intergenic 45.0%
ACTAAATAGGGTCGGCTACA+TGG + Chr6:14689986-14690005 None:intergenic 45.0%
AGATTCGAAGAGCCAATGGA+AGG + Chr6:14692445-14692464 None:intergenic 45.0%
AGGAAGGAAGAGAACCTTGA+TGG + Chr6:14692794-14692813 None:intergenic 45.0%
AGGGGAGAAGGGTTAGAAAA+TGG - Chr6:14690809-14690828 MsG0680031114.01.T01:intron 45.0%
ATGTAGCCGACCCTATTTAG+TGG - Chr6:14689985-14690004 MsG0680031114.01.T01:intron 45.0%
CAGAATTAAGGAGGGGAGAA+GGG - Chr6:14690798-14690817 MsG0680031114.01.T01:intron 45.0%
CAGGATGCTAACACTTCTGA+GGG - Chr6:14690645-14690664 MsG0680031114.01.T01:intron 45.0%
CAGGATTCATTGCATCCTCA+GGG + Chr6:14692747-14692766 None:intergenic 45.0%
CATGAATCCTGGAGTTTACG+AGG - Chr6:14690980-14690999 MsG0680031114.01.T01:CDS 45.0%
CGACCCTATTTAGTGGGATA+AGG - Chr6:14689992-14690011 MsG0680031114.01.T01:intron 45.0%
CGCAACTGTTCCACATTTGT+CGG - Chr6:14691087-14691106 MsG0680031114.01.T01:intron 45.0%
CTCCAGGATTCATGAGCAAT+AGG + Chr6:14690974-14690993 None:intergenic 45.0%
CTGGGATGTCTTTCTCTATG+AGG - Chr6:14692463-14692482 MsG0680031114.01.T01:intron 45.0%
CTTATCCTAGTAAGTGGGGT+TGG - Chr6:14689189-14689208 MsG0680031114.01.T01:intron 45.0%
GACCTATTGCTCATGAATCC+TGG - Chr6:14690969-14690988 MsG0680031114.01.T01:CDS 45.0%
GCTTCTTTATATGAGCGAGG+AGG - Chr6:14691414-14691433 MsG0680031114.01.T01:intron 45.0%
GGAAACTAGGTTTAGGTGGT+TGG - Chr6:14689783-14689802 MsG0680031114.01.T01:intron 45.0%
GGAAATGAAGGTTCGATCGA+TGG + Chr6:14688755-14688774 None:intergenic 45.0%
GGAGAAGGGTTAGAAAATGG+AGG - Chr6:14690812-14690831 MsG0680031114.01.T01:intron 45.0%
GGATTCATGAGCAATAGGTC+CGG + Chr6:14690969-14690988 None:intergenic 45.0%
GGCACCTATAGCACAAAAGA+TGG - Chr6:14689758-14689777 MsG0680031114.01.T01:intron 45.0%
GGCAGTTAATATCTGGAAGC+CGG - Chr6:14690947-14690966 MsG0680031114.01.T01:CDS 45.0%
TACATGTGAAGGGAAAGTCC+GGG + Chr6:14691197-14691216 None:intergenic 45.0%
TCAGAATTAAGGAGGGGAGA+AGG - Chr6:14690797-14690816 MsG0680031114.01.T01:intron 45.0%
TCAGGATTCATTGCATCCTC+AGG + Chr6:14692748-14692767 None:intergenic 45.0%
TGGATTACCTCGTAAACTCC+AGG + Chr6:14690990-14691009 None:intergenic 45.0%
TGTAGCCGACCCTATTTAGT+GGG - Chr6:14689986-14690005 MsG0680031114.01.T01:intron 45.0%
! AAGCTATGCCATTGGTGTTC+TGG - Chr6:14690514-14690533 MsG0680031114.01.T01:intron 45.0%
! CCCACCATCTTTTGTGCTAT+AGG + Chr6:14689765-14689784 None:intergenic 45.0%
! GGTGTGGTTTGGAAAAACCT+CGG + Chr6:14688782-14688801 None:intergenic 45.0%
! TTTTGGATGTGGGTGTGGTT+TGG + Chr6:14688793-14688812 None:intergenic 45.0%
!! AAGAGGTATTGCTGTACGAG+AGG + Chr6:14692302-14692321 None:intergenic 45.0%
!! CAAGAGCGTTGGATAGGTTT+GGG - Chr6:14690614-14690633 MsG0680031114.01.T01:intron 45.0%
!! GATGGTGGGAAACTAGGTTT+AGG - Chr6:14689776-14689795 MsG0680031114.01.T01:intron 45.0%
!! TCCATTGGCTCTTCGAATCT+GGG - Chr6:14692445-14692464 MsG0680031114.01.T01:intron 45.0%
!! TTCCATTGGCTCTTCGAATC+TGG - Chr6:14692444-14692463 MsG0680031114.01.T01:intron 45.0%
AAAGACATGGACCTGGTCAG+CGG - Chr6:14691226-14691245 MsG0680031114.01.T01:intron 50.0%
AACGCTCTTGGTGAAGGAAC+TGG + Chr6:14690604-14690623 None:intergenic 50.0%
ACCAGATAGAGTCCCTCCAT+TGG + Chr6:14691487-14691506 None:intergenic 50.0%
AGGAAGATGATTGGGGTTGG+TGG - Chr6:14690832-14690851 MsG0680031114.01.T01:intron 50.0%
CACGACACTCACACTCAACA+CGG - Chr6:14689149-14689168 MsG0680031114.01.T01:intron 50.0%
CAGATAGAGTCCCTCCATTG+GGG + Chr6:14691485-14691504 None:intergenic 50.0%
CCAAACCTATCCAACGCTCT+TGG + Chr6:14690616-14690635 None:intergenic 50.0%
CCAGATAGAGTCCCTCCATT+GGG + Chr6:14691486-14691505 None:intergenic 50.0%
CGAAGAGCCAATGGAAGGAA+AGG + Chr6:14692440-14692459 None:intergenic 50.0%
CGCGACGGACCTTTATATTG+AGG - Chr6:14689496-14689515 MsG0680031114.01.T01:intron 50.0%
CGTAATTGAGAGTGGTGGCA+AGG - Chr6:14689451-14689470 MsG0680031114.01.T01:intron 50.0%
CTATCCAACGCTCTTGGTGA+AGG + Chr6:14690610-14690629 None:intergenic 50.0%
CTTGGTGAAGGAACTGGACT+TGG + Chr6:14690598-14690617 None:intergenic 50.0%
GGTGGGAAACTAGGTTTAGG+TGG - Chr6:14689779-14689798 MsG0680031114.01.T01:intron 50.0%
TCCCAGATTCGAAGAGCCAA+TGG + Chr6:14692449-14692468 None:intergenic 50.0%
TGAGGATGTTGCGTGATGTG+TGG - Chr6:14689683-14689702 MsG0680031114.01.T01:intron 50.0%
TGGAGGAAGATGATTGGGGT+TGG - Chr6:14690829-14690848 MsG0680031114.01.T01:intron 50.0%
TGTAGCCAACCCCACTTACT+AGG + Chr6:14689197-14689216 None:intergenic 50.0%
TGTGACCGCAATTGCAGTTG+TGG - Chr6:14689561-14689580 MsG0680031114.01.T01:intron 50.0%
TTCCAGCAAAGACATGGACC+TGG - Chr6:14691219-14691238 MsG0680031114.01.T01:intron 50.0%
TTGAGAGTGGTGGCAAGGTT+CGG - Chr6:14689456-14689475 MsG0680031114.01.T01:intron 50.0%
TTGTGGTTGCAGTTACGCGA+CGG - Chr6:14689481-14689500 MsG0680031114.01.T01:intron 50.0%
! AGTTCCTTCACCAAGAGCGT+TGG - Chr6:14690603-14690622 MsG0680031114.01.T01:intron 50.0%
! GGAAGATGATTGGGGTTGGT+GGG - Chr6:14690833-14690852 MsG0680031114.01.T01:intron 50.0%
! TGAGCGAGGAGGATGCATTT+TGG - Chr6:14691425-14691444 MsG0680031114.01.T01:intron 50.0%
! TTGAGTGTGAGTGTCGTGTC+TGG + Chr6:14689147-14689166 None:intergenic 50.0%
!! ACGAGACATCAGCTCTGAAC+TGG - Chr6:14691153-14691172 MsG0680031114.01.T01:intron 50.0%
!! AGGGAGCATCTACCGAAGTT+AGG - Chr6:14692340-14692359 MsG0680031114.01.T01:intron 50.0%
!! AGTAAGTGGGGTTGGCTACA+TGG - Chr6:14689197-14689216 MsG0680031114.01.T01:intron 50.0%
!! CCAAGAGCGTTGGATAGGTT+TGG - Chr6:14690613-14690632 MsG0680031114.01.T01:intron 50.0%
!! CTTCACCAAGAGCGTTGGAT+AGG - Chr6:14690608-14690627 MsG0680031114.01.T01:intron 50.0%
ACGGAGGCAAGCTATGCCAT+TGG - Chr6:14690506-14690525 MsG0680031114.01.T01:intron 55.0%
CCAGCTAAAACCCCATTCCC+TGG + Chr6:14691388-14691407 None:intergenic 55.0%
CCCAATGGAGGGACTCTATC+TGG - Chr6:14691483-14691502 MsG0680031114.01.T01:intron 55.0%
CCTAGCATGATGCAAGCCAG+TGG - Chr6:14692391-14692410 MsG0680031114.01.T01:intron 55.0%
GACCAGGTCCATGTCTTTGC+TGG + Chr6:14691224-14691243 None:intergenic 55.0%
GCGGTCCACAACTGCAATTG+CGG + Chr6:14689569-14689588 None:intergenic 55.0%
GGTGGCAAGGTTCGGAATTG+TGG - Chr6:14689464-14689483 MsG0680031114.01.T01:intron 55.0%
TCCTGACACGTTATTGCCGC+TGG - Chr6:14692762-14692781 MsG0680031114.01.T01:five_prime_UTR 55.0%
! GTGAGTGTCGTGTCTGGTGT+CGG + Chr6:14689141-14689160 None:intergenic 55.0%
!! CCACTGGCTTGCATCATGCT+AGG + Chr6:14692394-14692413 None:intergenic 55.0%
!! CCAGGGAATGGGGTTTTAGC+TGG - Chr6:14691385-14691404 MsG0680031114.01.T01:intron 55.0%
!! GCCGCTGGCTTATTCCATCA+AGG - Chr6:14692777-14692796 MsG0680031114.01.T01:five_prime_UTR 55.0%
!! TTGGGGTTGGTGGGAGTGAT+TGG - Chr6:14690842-14690861 MsG0680031114.01.T01:intron 55.0%
GCCAGCGGCAATAACGTGTC+AGG + Chr6:14692766-14692785 None:intergenic 60.0%
TCCCTCCATTGGGGCGTGAA+CGG + Chr6:14691476-14691495 None:intergenic 60.0%
TTGTAGAGGGACCGCTGACC+AGG + Chr6:14691240-14691259 None:intergenic 60.0%
AGCCGTTCACGCCCCAATGG+AGG - Chr6:14691471-14691490 MsG0680031114.01.T01:intron 65.0%
AGGAGCCGTTCACGCCCCAA+TGG - Chr6:14691468-14691487 MsG0680031114.01.T01:intron 65.0%
GCCGTTCACGCCCCAATGGA+GGG - Chr6:14691472-14691491 MsG0680031114.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 14688707 14692873 14688707 ID=MsG0680031114.01;Name=MsG0680031114.01
Chr6 mRNA 14688707 14692873 14688707 ID=MsG0680031114.01.T01;Parent=MsG0680031114.01;Name=MsG0680031114.01.T01;_AED=0.43;_eAED=0.43;_QI=218|0.33|0.75|1|0|0|4|0|156
Chr6 exon 14688707 14688919 14688707 ID=MsG0680031114.01.T01:exon:10035;Parent=MsG0680031114.01.T01
Chr6 exon 14690076 14690191 14690076 ID=MsG0680031114.01.T01:exon:10034;Parent=MsG0680031114.01.T01
Chr6 exon 14690874 14691095 14690874 ID=MsG0680031114.01.T01:exon:10033;Parent=MsG0680031114.01.T01
Chr6 exon 14692736 14692873 14692736 ID=MsG0680031114.01.T01:exon:10032;Parent=MsG0680031114.01.T01
Chr6 five_prime_UTR 14692736 14692873 14692736 ID=MsG0680031114.01.T01:five_prime_utr;Parent=MsG0680031114.01.T01
Chr6 five_prime_UTR 14691016 14691095 14691016 ID=MsG0680031114.01.T01:five_prime_utr;Parent=MsG0680031114.01.T01
Chr6 CDS 14690874 14691015 14690874 ID=MsG0680031114.01.T01:cds;Parent=MsG0680031114.01.T01
Chr6 CDS 14690076 14690191 14690076 ID=MsG0680031114.01.T01:cds;Parent=MsG0680031114.01.T01
Chr6 CDS 14688707 14688919 14688707 ID=MsG0680031114.01.T01:cds;Parent=MsG0680031114.01.T01
Gene Sequence

>MsG0680031114.01.T01

ATGGAAAAGAAAAGAACCGATGACTATGAACCAAGTCCAGTTCCTTCACCAAGAGCGTTGGATAGGTTTGGGTTTATAAACAGGATGCTAACACTTCTGAGGGTGCAGCTAAGACGAGTAGATCAGCATATGAGTATGAGAAGGAATGGGGTTTTAGCTGGTCTTTTGCTTCTTTATATGAGCGAGGAGGATGCATTTTGGTTATTGGTGGCATTACTTAAAGGAGCCGTTCACGCCCCAATGGAGGGACTCTATCTGCAAATCTCTACTCATTGTTTGTTTTCTGCTTGCTTATCAGGTGAAGTTACATTTGAGAAACTGATACATGCCTTAAAAAACTTCCCTGAGGATGCAATGAATCCTGACACGTTATTGCCGCTGGCTTATTCCATCAAGGTTCTCTTCCTTCCTCTGCGTTTAACTTATTTCCATTTGCCTTTTGTTTGTCAACATCAAAGTTTTAAAATTTAA

Protein sequence

>MsG0680031114.01.T01

MEKKRTDDYEPSPVPSPRALDRFGFINRMLTLLRVQLRRVDQHMSMRRNGVLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLQISTHCLFSACLSGEVTFEKLIHALKNFPEDAMNPDTLLPLAYSIKVLFLPLRLTYFHLPFVCQHQSFKI*