Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280009716.01.T01 | KEH38367.1 | 51.605 | 405 | 46 | 6 | 1 | 255 | 1 | 405 | 1.71E-86 | 274 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280009716.01.T01 | Q9UT32 | 38.384 | 99 | 54 | 3 | 23 | 120 | 85 | 177 | 1.13E-13 | 73.2 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280009716.01.T01 | A0A072V9B4 | 51.605 | 405 | 46 | 6 | 1 | 255 | 1 | 405 | 8.15e-87 | 274 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048135.01 | MsG0280009716.01 | 0.824068 | 9.862142e-54 | 8.643745e-51 |
MsG0080048428.01 | MsG0280009716.01 | 0.834033 | 3.787144e-56 | 4.439954e-53 |
MsG0080048968.01 | MsG0280009716.01 | 0.829507 | 4.952742e-55 | 5.079014e-52 |
MsG0180000339.01 | MsG0280009716.01 | 0.806131 | 9.547545e-50 | 5.141771e-47 |
MsG0180000799.01 | MsG0280009716.01 | 0.805563 | 1.256801e-49 | 6.670298e-47 |
MsG0180000882.01 | MsG0280009716.01 | 0.827407 | 1.591160e-54 | 1.534902e-51 |
MsG0180001043.01 | MsG0280009716.01 | 0.809629 | 1.721811e-50 | 1.016156e-47 |
MsG0180001141.01 | MsG0280009716.01 | 0.842720 | 2.175875e-58 | 3.327955e-55 |
MsG0180001213.01 | MsG0280009716.01 | 0.849226 | 3.705236e-60 | 6.977389e-57 |
MsG0180002023.01 | MsG0280009716.01 | 0.888681 | 4.757442e-73 | 3.721838e-69 |
MsG0180002283.01 | MsG0280009716.01 | 0.804010 | 2.652322e-49 | 1.352611e-46 |
MsG0180002458.01 | MsG0280009716.01 | 0.876692 | 1.140681e-68 | 5.582388e-65 |
MsG0180003073.01 | MsG0280009716.01 | 0.882108 | 1.373498e-70 | 8.259911e-67 |
MsG0180003097.01 | MsG0280009716.01 | 0.882012 | 1.487874e-70 | 8.914154e-67 |
MsG0180003113.01 | MsG0280009716.01 | 0.827960 | 1.171921e-54 | 1.148782e-51 |
MsG0180003117.01 | MsG0280009716.01 | 0.839771 | 1.297778e-57 | 1.810611e-54 |
MsG0180003627.01 | MsG0280009716.01 | 0.800229 | 1.589760e-48 | 7.363107e-46 |
MsG0180003854.01 | MsG0280009716.01 | 0.879589 | 1.101903e-69 | 6.008596e-66 |
MsG0180004129.01 | MsG0280009716.01 | 0.830487 | 2.855989e-55 | 3.013168e-52 |
MsG0180004130.01 | MsG0280009716.01 | 0.859317 | 4.497877e-63 | 1.182958e-59 |
MsG0180004151.01 | MsG0280009716.01 | 0.828166 | 1.045319e-54 | 1.030853e-51 |
MsG0180004509.01 | MsG0280009716.01 | 0.803154 | 3.991526e-49 | 1.991286e-46 |
MsG0180004780.01 | MsG0280009716.01 | 0.861366 | 1.079433e-63 | 3.047321e-60 |
MsG0180004915.01 | MsG0280009716.01 | 0.895930 | 6.000138e-76 | 6.349421e-72 |
MsG0180005382.01 | MsG0280009716.01 | 0.816331 | 5.842145e-52 | 4.127814e-49 |
MsG0180005436.01 | MsG0280009716.01 | 0.848186 | 7.194162e-60 | 1.309382e-56 |
MsG0180005851.01 | MsG0280009716.01 | 0.857363 | 1.717522e-62 | 4.228511e-59 |
MsG0180005957.01 | MsG0280009716.01 | 0.877108 | 8.185086e-69 | 4.066924e-65 |
MsG0180006143.01 | MsG0280009716.01 | 0.878439 | 2.806534e-69 | 1.465699e-65 |
MsG0280006327.01 | MsG0280009716.01 | 0.823416 | 1.401667e-53 | 1.206007e-50 |
MsG0280006406.01 | MsG0280009716.01 | 0.908670 | 1.326104e-81 | 2.487575e-77 |
MsG0280006422.01 | MsG0280009716.01 | 0.805579 | 1.246898e-49 | 6.620740e-47 |
MsG0280007222.01 | MsG0280009716.01 | 0.889835 | 1.696700e-73 | 1.391223e-69 |
MsG0280007690.01 | MsG0280009716.01 | 0.854052 | 1.590665e-61 | 3.508369e-58 |
MsG0280008037.01 | MsG0280009716.01 | 0.873503 | 1.398458e-67 | 6.084234e-64 |
MsG0280008239.01 | MsG0280009716.01 | 0.820072 | 8.322459e-53 | 6.519221e-50 |
MsG0280008613.01 | MsG0280009716.01 | 0.814580 | 1.433369e-51 | 9.654608e-49 |
MsG0280008696.01 | MsG0280009716.01 | 0.815871 | 7.401868e-52 | 5.164027e-49 |
MsG0280009230.01 | MsG0280009716.01 | 0.907529 | 4.591436e-81 | 8.176087e-77 |
MsG0280009375.01 | MsG0280009716.01 | 0.825582 | 4.334218e-54 | 3.966700e-51 |
MsG0280009716.01 | MsG0280010275.01 | -0.831848 | 1.322882e-55 | 1.453296e-52 |
MsG0280009716.01 | MsG0280010276.01 | -0.836992 | 6.760899e-57 | 8.663579e-54 |
MsG0280009716.01 | MsG0280011141.01 | 0.809681 | 1.678060e-50 | 9.916485e-48 |
MsG0280009716.01 | MsG0280011387.01 | 0.865274 | 6.649260e-65 | 2.150663e-61 |
MsG0280009716.01 | MsG0380011659.01 | 0.835514 | 1.605137e-56 | 1.967318e-53 |
MsG0280009716.01 | MsG0380011704.01 | 0.807295 | 5.419967e-50 | 3.007677e-47 |
MsG0280009716.01 | MsG0380012108.01 | 0.876855 | 1.002095e-68 | 4.933855e-65 |
MsG0280009716.01 | MsG0380012250.01 | 0.800703 | 1.272890e-48 | 5.966590e-46 |
MsG0280009716.01 | MsG0380012310.01 | 0.850610 | 1.519617e-60 | 2.993256e-57 |
MsG0280009716.01 | MsG0380012566.01 | 0.879077 | 1.672188e-69 | 8.943219e-66 |
MsG0280009716.01 | MsG0380013178.01 | 0.830326 | 3.127321e-55 | 3.284209e-52 |
MsG0280009716.01 | MsG0380014276.01 | 0.904712 | 9.215962e-80 | 1.443144e-75 |
MsG0280009716.01 | MsG0380014548.01 | 0.802358 | 5.827200e-49 | 2.848788e-46 |
MsG0280009716.01 | MsG0380014577.01 | 0.908935 | 9.919980e-82 | 1.885133e-77 |
MsG0280009716.01 | MsG0380014885.01 | 0.810097 | 1.365295e-50 | 8.156590e-48 |
MsG0280009716.01 | MsG0380014908.01 | 0.800784 | 1.225212e-48 | 5.754951e-46 |
MsG0280009716.01 | MsG0380015027.01 | 0.804014 | 2.646730e-49 | 1.349914e-46 |
MsG0280009716.01 | MsG0380015164.01 | 0.828251 | 9.976375e-55 | 9.861883e-52 |
MsG0280009716.01 | MsG0380015779.01 | 0.814231 | 1.711896e-51 | 1.142224e-48 |
MsG0280009716.01 | MsG0380016906.01 | 0.823195 | 1.578089e-53 | 1.349517e-50 |
MsG0280009716.01 | MsG0380017044.01 | 0.802352 | 5.842884e-49 | 2.856016e-46 |
MsG0280009716.01 | MsG0380017146.01 | 0.844127 | 9.164319e-59 | 1.465168e-55 |
MsG0280009716.01 | MsG0380017429.01 | 0.813449 | 2.545776e-51 | 1.663083e-48 |
MsG0280009716.01 | MsG0380017788.01 | 0.855600 | 5.657440e-62 | 1.313172e-58 |
MsG0280009716.01 | MsG0380017864.01 | 0.831124 | 1.993826e-55 | 2.143558e-52 |
MsG0280009716.01 | MsG0380017866.01 | 0.808896 | 2.472128e-50 | 1.430507e-47 |
MsG0280009716.01 | MsG0380018009.01 | 0.810870 | 9.297192e-51 | 5.669427e-48 |
MsG0280009716.01 | MsG0480018163.01 | 0.818525 | 1.873562e-52 | 1.405815e-49 |
MsG0280009716.01 | MsG0480018289.01 | 0.837528 | 4.930166e-57 | 6.422237e-54 |
MsG0280009716.01 | MsG0480018461.01 | 0.805963 | 1.035467e-49 | 5.552779e-47 |
MsG0280009716.01 | MsG0480019373.01 | 0.874165 | 8.359976e-68 | 3.724730e-64 |
MsG0280009716.01 | MsG0480019486.01 | 0.820701 | 5.968590e-53 | 4.757056e-50 |
MsG0280009716.01 | MsG0480021006.01 | 0.817502 | 3.189553e-52 | 2.326958e-49 |
MsG0280009716.01 | MsG0480021034.01 | 0.816569 | 5.170087e-52 | 3.676520e-49 |
MsG0280009716.01 | MsG0480021164.01 | 0.875628 | 2.653486e-68 | 1.247873e-64 |
MsG0280009716.01 | MsG0480021904.01 | 0.937919 | 1.580193e-98 | 1.474010e-93 |
MsG0280009716.01 | MsG0480021945.01 | 0.805102 | 1.569833e-49 | 8.233846e-47 |
MsG0280009716.01 | MsG0480021994.01 | 0.855680 | 5.363069e-62 | 1.248228e-58 |
MsG0280009716.01 | MsG0480022164.01 | 0.802420 | 5.659091e-49 | 2.770950e-46 |
MsG0280009716.01 | MsG0480022222.01 | 0.806078 | 9.793146e-50 | 5.266945e-47 |
MsG0280009716.01 | MsG0480022252.01 | 0.832349 | 9.943980e-56 | 1.108473e-52 |
MsG0280009716.01 | MsG0480022493.01 | 0.818132 | 2.299625e-52 | 1.706848e-49 |
MsG0280009716.01 | MsG0480022791.01 | 0.881628 | 2.048613e-70 | 1.209091e-66 |
MsG0280009716.01 | MsG0480022851.01 | 0.810938 | 8.988390e-51 | 5.491306e-48 |
MsG0280009716.01 | MsG0480023149.01 | 0.807445 | 5.038497e-50 | 2.806830e-47 |
MsG0280009716.01 | MsG0480023174.01 | 0.853277 | 2.657195e-61 | 5.710708e-58 |
MsG0280009716.01 | MsG0480023258.01 | 0.824912 | 6.240502e-54 | 5.603950e-51 |
MsG0280009716.01 | MsG0480023282.01 | 0.879510 | 1.174949e-69 | 6.386727e-66 |
MsG0280009716.01 | MsG0480023378.01 | 0.815966 | 7.048919e-52 | 4.930766e-49 |
MsG0280009716.01 | MsG0480023415.01 | 0.865658 | 5.034553e-65 | 1.651145e-61 |
MsG0280009716.01 | MsG0480023744.01 | 0.838060 | 3.598514e-57 | 4.764561e-54 |
MsG0280009716.01 | MsG0480023968.01 | 0.819924 | 8.995555e-53 | 7.017159e-50 |
MsG0280009716.01 | MsG0580024165.01 | 0.832666 | 8.300289e-56 | 9.340873e-53 |
MsG0280009716.01 | MsG0580024390.01 | 0.905596 | 3.632117e-80 | 5.915700e-76 |
MsG0280009716.01 | MsG0580024510.01 | 0.823465 | 1.365266e-53 | 1.176397e-50 |
MsG0280009716.01 | MsG0580024512.01 | 0.845367 | 4.245758e-59 | 7.058931e-56 |
MsG0280009716.01 | MsG0580024874.01 | 0.836621 | 8.406858e-57 | 1.065177e-53 |
MsG0280009716.01 | MsG0580024974.01 | 0.820521 | 6.565066e-53 | 5.206253e-50 |
MsG0280009716.01 | MsG0580025089.01 | 0.832669 | 8.286933e-56 | 9.326550e-53 |
MsG0280009716.01 | MsG0580025296.01 | 0.802177 | 6.348421e-49 | 3.089111e-46 |
MsG0280009716.01 | MsG0580025400.01 | 0.898765 | 3.849985e-77 | 4.618701e-73 |
MsG0280009716.01 | MsG0580025421.01 | 0.951928 | 7.221187e-110 | 1.709913e-104 |
MsG0280009716.01 | MsG0580025448.01 | 0.811457 | 6.933215e-51 | 4.294015e-48 |
MsG0280009716.01 | MsG0580027043.01 | 0.823966 | 1.042100e-53 | 9.107942e-51 |
MsG0280009716.01 | MsG0580027319.01 | -0.819782 | 9.695343e-53 | 7.533082e-50 |
MsG0280009716.01 | MsG0580027441.01 | 0.805259 | 1.455593e-49 | 7.665015e-47 |
MsG0280009716.01 | MsG0580028072.01 | 0.810582 | 1.072809e-50 | 6.491662e-48 |
MsG0280009716.01 | MsG0580028606.01 | 0.839315 | 1.705580e-57 | 2.346468e-54 |
MsG0280009716.01 | MsG0580028958.01 | 0.812882 | 3.389171e-51 | 2.180228e-48 |
MsG0280009716.01 | MsG0580029283.01 | 0.878735 | 2.207092e-69 | 1.165364e-65 |
MsG0280009716.01 | MsG0580029783.01 | 0.852728 | 3.816315e-61 | 8.049455e-58 |
MsG0280009716.01 | MsG0580029952.01 | 0.879847 | 8.919434e-70 | 4.912445e-66 |
MsG0280009716.01 | MsG0680030285.01 | 0.836239 | 1.051349e-56 | 1.317241e-53 |
MsG0280009716.01 | MsG0680030320.01 | 0.800273 | 1.557075e-48 | 7.219889e-46 |
MsG0280009716.01 | MsG0680030351.01 | 0.858545 | 7.656536e-63 | 1.960986e-59 |
MsG0280009716.01 | MsG0680030414.01 | 0.904251 | 1.491537e-79 | 2.287982e-75 |
MsG0280009716.01 | MsG0680031243.01 | 0.820193 | 7.805230e-53 | 6.134489e-50 |
MsG0280009716.01 | MsG0680031822.01 | 0.872853 | 2.311673e-67 | 9.820277e-64 |
MsG0280009716.01 | MsG0680032430.01 | 0.880212 | 6.613130e-70 | 3.693853e-66 |
MsG0280009716.01 | MsG0680034061.01 | 0.807217 | 5.629802e-50 | 3.117758e-47 |
MsG0280009716.01 | MsG0680035278.01 | 0.834455 | 2.967921e-56 | 3.524113e-53 |
MsG0280009716.01 | MsG0680035582.01 | 0.803458 | 3.452627e-49 | 1.735936e-46 |
MsG0280009716.01 | MsG0680035704.01 | 0.819718 | 1.002748e-52 | 7.776949e-50 |
MsG0280009716.01 | MsG0680035854.01 | 0.895159 | 1.248818e-75 | 1.280360e-71 |
MsG0280009716.01 | MsG0780036240.01 | 0.845367 | 4.243636e-59 | 7.055473e-56 |
MsG0280009716.01 | MsG0780036705.01 | 0.840683 | 7.501743e-58 | 1.076705e-54 |
MsG0280009716.01 | MsG0780036813.01 | 0.843500 | 1.348811e-58 | 2.114441e-55 |
MsG0280009716.01 | MsG0780038400.01 | 0.817156 | 3.816224e-52 | 2.757819e-49 |
MsG0280009716.01 | MsG0780038565.01 | 0.803496 | 3.390508e-49 | 1.706397e-46 |
MsG0280009716.01 | MsG0780038645.01 | 0.829535 | 4.876522e-55 | 5.004988e-52 |
MsG0280009716.01 | MsG0780039258.01 | 0.824078 | 9.804875e-54 | 8.596235e-51 |
MsG0280009716.01 | MsG0780039289.01 | 0.834134 | 3.572882e-56 | 4.201168e-53 |
MsG0280009716.01 | MsG0780039623.01 | 0.807373 | 5.218571e-50 | 2.901683e-47 |
MsG0280009716.01 | MsG0780040338.01 | 0.842244 | 2.910994e-58 | 4.386704e-55 |
MsG0280009716.01 | MsG0780040445.01 | 0.872147 | 3.976840e-67 | 1.646177e-63 |
MsG0280009716.01 | MsG0780040856.01 | 0.811296 | 7.515353e-51 | 4.634442e-48 |
MsG0280009716.01 | MsG0780040861.01 | 0.841621 | 4.252266e-58 | 6.284104e-55 |
MsG0280009716.01 | MsG0780041294.01 | 0.869558 | 2.830284e-66 | 1.066749e-62 |
MsG0280009716.01 | MsG0780041295.01 | 0.845437 | 4.062664e-59 | 6.770153e-56 |
MsG0280009716.01 | MsG0780041345.01 | 0.842074 | 3.228812e-58 | 4.839846e-55 |
MsG0280009716.01 | MsG0780041402.01 | 0.819234 | 1.292553e-52 | 9.890209e-50 |
MsG0280009716.01 | MsG0780041462.01 | 0.816109 | 6.550648e-52 | 4.600128e-49 |
MsG0280009716.01 | MsG0780041555.01 | 0.859560 | 3.800575e-63 | 1.007897e-59 |
MsG0280009716.01 | MsG0780041559.01 | 0.803397 | 3.554746e-49 | 1.784473e-46 |
MsG0280009716.01 | MsG0880042232.01 | 0.815174 | 1.058095e-51 | 7.241900e-49 |
MsG0280009716.01 | MsG0880042294.01 | 0.865385 | 6.135277e-65 | 1.992276e-61 |
MsG0280009716.01 | MsG0880042314.01 | 0.874832 | 4.959742e-68 | 2.266050e-64 |
MsG0280009716.01 | MsG0880042404.01 | 0.870869 | 1.052796e-66 | 4.160364e-63 |
MsG0280009716.01 | MsG0880042663.01 | 0.834598 | 2.731938e-56 | 3.257693e-53 |
MsG0280009716.01 | MsG0880043082.01 | 0.804463 | 2.134791e-49 | 1.101381e-46 |
MsG0280009716.01 | MsG0880043592.01 | 0.811369 | 7.246559e-51 | 4.477411e-48 |
MsG0280009716.01 | MsG0880045631.01 | 0.812196 | 4.789077e-51 | 3.025247e-48 |
MsG0280009716.01 | MsG0880046177.01 | 0.819914 | 9.040413e-53 | 7.050355e-50 |
MsG0280009716.01 | MsG0880046285.01 | 0.889853 | 1.669775e-73 | 1.370435e-69 |
MsG0280009716.01 | MsG0880046321.01 | 0.948293 | 1.256424e-106 | 2.326755e-101 |
MsG0280009716.01 | MsG0880046328.01 | 0.914642 | 1.509049e-84 | 3.788520e-80 |
MsG0280009716.01 | MsG0880046575.01 | 0.888573 | 5.238113e-73 | 4.080876e-69 |
MsG0280009716.01 | MsG0880046631.01 | 0.806902 | 6.565497e-50 | 3.606250e-47 |
MsG0280009716.01 | MsG0880046647.01 | 0.866798 | 2.190464e-65 | 7.477807e-62 |
MsG0280009716.01 | MsG0880046933.01 | 0.844557 | 7.022770e-59 | 1.138105e-55 |
MsG0280009716.01 | MsG0880046973.01 | 0.801462 | 8.903489e-49 | 4.254501e-46 |
MsG0280009716.01 | MsG0880047019.01 | 0.822073 | 2.879474e-53 | 2.384963e-50 |
MsG0280009716.01 | MsG0880047038.01 | 0.873691 | 1.208730e-67 | 5.292933e-64 |
MsG0280009716.01 | MsG0880047116.01 | 0.855156 | 7.621756e-62 | 1.743051e-58 |
MsG0280009716.01 | MsG0880047286.01 | 0.863975 | 1.695640e-64 | 5.237709e-61 |
MsG0280009716.01 | MsG0880047427.01 | 0.858907 | 5.967551e-63 | 1.547522e-59 |
MsG0280009716.01 | MsG0880047428.01 | 0.848200 | 7.133499e-60 | 1.298893e-56 |
MsG0280009716.01 | MsG0880047448.01 | 0.836814 | 7.506579e-57 | 9.567623e-54 |
MsG0280009716.01 | MsG0880047607.01 | 0.837701 | 4.450792e-57 | 5.829102e-54 |
MsG0280009716.01 | MsG0880047608.01 | 0.808112 | 3.634408e-50 | 2.060313e-47 |
PPI
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280009716.01.T01 | MTR_2g064460 | 51.605 | 405 | 46 | 6 | 1 | 255 | 1 | 405 | 2.07e-90 | 274 |
MsG0280009716.01.T01 | MTR_2g064460 | 51.605 | 405 | 46 | 6 | 1 | 255 | 1 | 405 | 2.94e-90 | 273 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280009716.01.T01 | AT3G58660 | 48.993 | 149 | 43 | 3 | 24 | 141 | 93 | 239 | 2.59e-37 | 136 |
MsG0280009716.01.T01 | AT2G42650 | 35.827 | 254 | 77 | 8 | 24 | 196 | 73 | 321 | 3.02e-36 | 132 |
MsG0280009716.01.T01 | AT1G06380 | 41.667 | 144 | 47 | 4 | 22 | 134 | 86 | 223 | 3.18e-26 | 103 |
Find 47 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCGTTGTTGCCGAGGTTAT+TGG | 0.297689 | 2:+57060546 | MsG0280009716.01.T01:CDS |
TGCGACGGTGTCGGCGTTGC+TGG | 0.306658 | 2:-57060144 | None:intergenic |
CCGTTGTTGCCGAGGTTATT+GGG | 0.308899 | 2:+57060547 | MsG0280009716.01.T01:CDS |
GATTCATGAGATTAAGTATA+TGG | 0.340892 | 2:+57060958 | MsG0280009716.01.T01:CDS |
AGCTTAAGAATCTTCGAAAT+AGG | 0.370256 | 2:-57060433 | None:intergenic |
TGTTAGTGGTGGTGGTGATA+AGG | 0.379181 | 2:+57061054 | MsG0280009716.01.T01:CDS |
TTAGGATTTGGAGGATAAGT+TGG | 0.391640 | 2:+57060883 | MsG0280009716.01.T01:intron |
GAAGGTGGCTAAGTTGAGTA+TGG | 0.394014 | 2:+57060696 | MsG0280009716.01.T01:CDS |
GAAGTCATCCGTGAAGGAAA+AGG | 0.432264 | 2:+57061273 | MsG0280009716.01.T01:CDS |
ATCGTCCGTTTGAGGCGAAA+AGG | 0.448339 | 2:+57060476 | MsG0280009716.01.T01:CDS |
CCGTAGACTCTCTTCTCAAA+TGG | 0.472791 | 2:+57060171 | MsG0280009716.01.T01:CDS |
GTTGGTGAAGGATGAGAAGA+AGG | 0.482303 | 2:+57060901 | MsG0280009716.01.T01:CDS |
AGCTCAGAAGAAAGTTCAAT+CGG | 0.489034 | 2:+57060402 | MsG0280009716.01.T01:CDS |
CGAAGAAGAGTAAGAAGAAA+GGG | 0.491276 | 2:+57060933 | MsG0280009716.01.T01:CDS |
AAGTCATCCGTGAAGGAAAA+GGG | 0.497780 | 2:+57061274 | MsG0280009716.01.T01:CDS |
GCGAAGAAGAGTAAGAAGAA+AGG | 0.499538 | 2:+57060932 | MsG0280009716.01.T01:CDS |
GTTGATGATGATAGTGAGAT+TGG | 0.503978 | 2:+57061076 | MsG0280009716.01.T01:CDS |
TGAGATTGGTGAATCGAGAG+TGG | 0.509987 | 2:+57061090 | MsG0280009716.01.T01:CDS |
AAAGAAGAAGAATAACGAAA+GGG | 0.510396 | 2:+57061300 | MsG0280009716.01.T01:CDS |
CCCAATAACCTCGGCAACAA+CGG | 0.513459 | 2:-57060547 | None:intergenic |
GGTGTCGGCGTTGCTGGTTA+CGG | 0.518609 | 2:-57060138 | None:intergenic |
TGAGAATGTTGTTGCTGCGA+TGG | 0.520350 | 2:+57060735 | MsG0280009716.01.T01:CDS |
GACGGATTATCGTCCGTTTG+AGG | 0.522523 | 2:+57060468 | MsG0280009716.01.T01:CDS |
TTTGGAGGATAAGTTGGTGA+AGG | 0.536369 | 2:+57060889 | MsG0280009716.01.T01:CDS |
AAGAAGAAGAATAACGAAAG+GGG | 0.546809 | 2:+57061301 | MsG0280009716.01.T01:CDS |
CCATTTGAGAAGAGAGTCTA+CGG | 0.552491 | 2:-57060171 | None:intergenic |
AGAAGAGTAAGAAGAAAGGG+AGG | 0.553817 | 2:+57060936 | MsG0280009716.01.T01:CDS |
CTGGGACTTGTAGTGGGTGA+AGG | 0.556510 | 2:+57060678 | MsG0280009716.01.T01:intron |
AATGTGAATGCTGCAGAAGA+AGG | 0.562909 | 2:+57061223 | MsG0280009716.01.T01:CDS |
GCTAAGAGGAAGAAGAAAGA+TGG | 0.567938 | 2:+57061197 | MsG0280009716.01.T01:intron |
CGTTGTTGCCGAGGTTATTG+GGG | 0.570182 | 2:+57060548 | MsG0280009716.01.T01:CDS |
CTATTGTGCCGTTGTTGCCG+AGG | 0.574937 | 2:+57060539 | MsG0280009716.01.T01:CDS |
GAATGTTGTTGCTGCGATGG+AGG | 0.588380 | 2:+57060738 | MsG0280009716.01.T01:CDS |
AACTGCTTCCCCAATAACCT+CGG | 0.596591 | 2:-57060556 | None:intergenic |
GATTGGTGAATCGAGAGTGG+AGG | 0.598082 | 2:+57061093 | MsG0280009716.01.T01:CDS |
AATGTTGTTGCTGCGATGGA+GGG | 0.600510 | 2:+57060739 | MsG0280009716.01.T01:CDS |
TCATCTTTAGTGATACGAGA+GGG | 0.604437 | 2:-57060379 | None:intergenic |
GATGATAGAATGAGTTCAGA+TGG | 0.609600 | 2:+57060980 | MsG0280009716.01.T01:CDS |
GAATAAGAAGTCATCCGTGA+AGG | 0.611646 | 2:+57061267 | MsG0280009716.01.T01:CDS |
CAAAGAAGAAGAATAACGAA+AGG | 0.611890 | 2:+57061299 | MsG0280009716.01.T01:CDS |
TGCGATGGAGGGTGTTGTCG+AGG | 0.617796 | 2:+57060750 | MsG0280009716.01.T01:CDS |
GGACTTGTAGTGGGTGAAGG+TGG | 0.627079 | 2:+57060681 | MsG0280009716.01.T01:intron |
TAAGCTTTCGAAGCTCATGA+CGG | 0.630267 | 2:+57060450 | MsG0280009716.01.T01:CDS |
ATTGGTGAATCGAGAGTGGA+GGG | 0.634180 | 2:+57061094 | MsG0280009716.01.T01:CDS |
TTCATCTTTAGTGATACGAG+AGG | 0.646711 | 2:-57060380 | None:intergenic |
GTCGGCGTTGCTGGTTACGG+TGG | 0.647021 | 2:-57060135 | None:intergenic |
AGAAGAAGAATAACGAAAGG+GGG | 0.686284 | 2:+57061302 | MsG0280009716.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAAGAAGAAGAATAACGAAA+GGG | + | Chr2:57061300-57061319 | MsG0280009716.01.T01:CDS | 25.0% |
! | GATTCATGAGATTAAGTATA+TGG | + | Chr2:57060958-57060977 | MsG0280009716.01.T01:CDS | 25.0% |
AAGAAGAAGAATAACGAAAG+GGG | + | Chr2:57061301-57061320 | MsG0280009716.01.T01:CDS | 30.0% | |
AGCTTAAGAATCTTCGAAAT+AGG | - | Chr2:57060436-57060455 | None:intergenic | 30.0% | |
ATTTGCAGAAGAAGAATTGA+AGG | + | Chr2:57060611-57060630 | MsG0280009716.01.T01:intron | 30.0% | |
CAAAGAAGAAGAATAACGAA+AGG | + | Chr2:57061299-57061318 | MsG0280009716.01.T01:CDS | 30.0% | |
! | ACCTTTTGATGGAATTTCTT+AGG | - | Chr2:57060269-57060288 | None:intergenic | 30.0% |
! | ATCGATGATGATTTTGTTAG+TGG | + | Chr2:57061040-57061059 | MsG0280009716.01.T01:CDS | 30.0% |
! | CCTTTTGATGGAATTTCTTA+GGG | - | Chr2:57060268-57060287 | None:intergenic | 30.0% |
!! | GTCTTTTCATGTTAAGTTGT+TGG | + | Chr2:57060800-57060819 | MsG0280009716.01.T01:intron | 30.0% |
!! | TTTTAAGAAGAGGAAGATTC+CGG | + | Chr2:57060579-57060598 | MsG0280009716.01.T01:CDS | 30.0% |
AAAGAGGATTTGAGTGAGTT+GGG | + | Chr2:57061150-57061169 | MsG0280009716.01.T01:intron | 35.0% | |
AATTTCTTAGGGTTAGGATG+AGG | - | Chr2:57060257-57060276 | None:intergenic | 35.0% | |
AGAAGAAGAATAACGAAAGG+GGG | + | Chr2:57061302-57061321 | MsG0280009716.01.T01:CDS | 35.0% | |
AGCTCAGAAGAAAGTTCAAT+CGG | + | Chr2:57060402-57060421 | MsG0280009716.01.T01:CDS | 35.0% | |
CCCTAAGAAATTCCATCAAA+AGG | + | Chr2:57060265-57060284 | MsG0280009716.01.T01:intron | 35.0% | |
CGAAGAAGAGTAAGAAGAAA+GGG | + | Chr2:57060933-57060952 | MsG0280009716.01.T01:CDS | 35.0% | |
GAAGAAAGGAGTGAATAAAG+AGG | + | Chr2:57061134-57061153 | MsG0280009716.01.T01:intron | 35.0% | |
GATGATAGAATGAGTTCAGA+TGG | + | Chr2:57060980-57060999 | MsG0280009716.01.T01:CDS | 35.0% | |
GTGAATAAGAAGAGGAAGAA+AGG | + | Chr2:57061120-57061139 | MsG0280009716.01.T01:intron | 35.0% | |
TAAAGAGGATTTGAGTGAGT+TGG | + | Chr2:57061149-57061168 | MsG0280009716.01.T01:intron | 35.0% | |
TCAATCTTCAACCTAACATC+AGG | - | Chr2:57060857-57060876 | None:intergenic | 35.0% | |
TCATCTTTAGTGATACGAGA+GGG | - | Chr2:57060382-57060401 | None:intergenic | 35.0% | |
TGATGGAATTTCTTAGGGTT+AGG | - | Chr2:57060263-57060282 | None:intergenic | 35.0% | |
TTAGGATTTGGAGGATAAGT+TGG | + | Chr2:57060883-57060902 | MsG0280009716.01.T01:intron | 35.0% | |
TTCATCTTTAGTGATACGAG+AGG | - | Chr2:57060383-57060402 | None:intergenic | 35.0% | |
! | GATGATGATTTTGTTAGTGG+TGG | + | Chr2:57061043-57061062 | MsG0280009716.01.T01:CDS | 35.0% |
!! | ATGTTAGGTTGAAGATTGAG+GGG | + | Chr2:57060858-57060877 | MsG0280009716.01.T01:intron | 35.0% |
!! | GATGTTAGGTTGAAGATTGA+GGG | + | Chr2:57060857-57060876 | MsG0280009716.01.T01:intron | 35.0% |
!! | GTTGATGATGATAGTGAGAT+TGG | + | Chr2:57061076-57061095 | MsG0280009716.01.T01:CDS | 35.0% |
!! | TGATGTTAGGTTGAAGATTG+AGG | + | Chr2:57060856-57060875 | MsG0280009716.01.T01:intron | 35.0% |
!!! | CTTTGTTGTTTTTGAGGACT+GGG | + | Chr2:57060660-57060679 | MsG0280009716.01.T01:intron | 35.0% |
!!! | GGAAGCAGTTTTTTAAGAAG+AGG | + | Chr2:57060569-57060588 | MsG0280009716.01.T01:CDS | 35.0% |
!!! | TCTCTGCTTTGTTGTTTTTG+AGG | + | Chr2:57060654-57060673 | MsG0280009716.01.T01:intron | 35.0% |
AAGTCATCCGTGAAGGAAAA+GGG | + | Chr2:57061274-57061293 | MsG0280009716.01.T01:CDS | 40.0% | |
AATGTGAATGCTGCAGAAGA+AGG | + | Chr2:57061223-57061242 | MsG0280009716.01.T01:CDS | 40.0% | |
AGAAGAGTAAGAAGAAAGGG+AGG | + | Chr2:57060936-57060955 | MsG0280009716.01.T01:CDS | 40.0% | |
ATCAGGAACAGCCTGATAAA+CGG | - | Chr2:57060840-57060859 | None:intergenic | 40.0% | |
ATTGAAGGAGCAGATTGAGA+AGG | + | Chr2:57060626-57060645 | MsG0280009716.01.T01:intron | 40.0% | |
CCATTTGAGAAGAGAGTCTA+CGG | - | Chr2:57060174-57060193 | None:intergenic | 40.0% | |
GAATAAGAAGTCATCCGTGA+AGG | + | Chr2:57061267-57061286 | MsG0280009716.01.T01:CDS | 40.0% | |
GCGAAGAAGAGTAAGAAGAA+AGG | + | Chr2:57060932-57060951 | MsG0280009716.01.T01:CDS | 40.0% | |
GCTAAGAGGAAGAAGAAAGA+TGG | + | Chr2:57061197-57061216 | MsG0280009716.01.T01:intron | 40.0% | |
TAAGCTTTCGAAGCTCATGA+CGG | + | Chr2:57060450-57060469 | MsG0280009716.01.T01:CDS | 40.0% | |
TCGAGGTTTACCGAAGAAAT+GGG | + | Chr2:57060767-57060786 | MsG0280009716.01.T01:intron | 40.0% | |
TCGTCTTCGTCAAAGAGTTT+GGG | - | Chr2:57060222-57060241 | None:intergenic | 40.0% | |
TTCGTCTTCGTCAAAGAGTT+TGG | - | Chr2:57060223-57060242 | None:intergenic | 40.0% | |
! | AACTTCCTTTTCGCCTCAAA+CGG | - | Chr2:57060484-57060503 | None:intergenic | 40.0% |
! | CTTTGAACCCTTTTCCTTCA+CGG | - | Chr2:57061284-57061303 | None:intergenic | 40.0% |
! | GATGATTTTGTTAGTGGTGG+TGG | + | Chr2:57061046-57061065 | MsG0280009716.01.T01:CDS | 40.0% |
! | GGGAAGTGTGAAATCATGAA+GGG | + | Chr2:57061170-57061189 | MsG0280009716.01.T01:intron | 40.0% |
! | TGGGAAGTGTGAAATCATGA+AGG | + | Chr2:57061169-57061188 | MsG0280009716.01.T01:intron | 40.0% |
!! | CGTCAAAGAGTTTGGGTTTT+CGG | - | Chr2:57060215-57060234 | None:intergenic | 40.0% |
!! | TGTTAGGTTGAAGATTGAGG+GGG | + | Chr2:57060859-57060878 | MsG0280009716.01.T01:intron | 40.0% |
!! | TTTGGAGGATAAGTTGGTGA+AGG | + | Chr2:57060889-57060908 | MsG0280009716.01.T01:CDS | 40.0% |
!!! | GCTTTGTTGTTTTTGAGGAC+TGG | + | Chr2:57060659-57060678 | MsG0280009716.01.T01:intron | 40.0% |
AACTGCTTCCCCAATAACCT+CGG | - | Chr2:57060559-57060578 | None:intergenic | 45.0% | |
AATGTTGTTGCTGCGATGGA+GGG | + | Chr2:57060739-57060758 | MsG0280009716.01.T01:CDS | 45.0% | |
AGAAGAATAACGAAAGGGGG+TGG | + | Chr2:57061305-57061324 | MsG0280009716.01.T01:CDS | 45.0% | |
AGATGAGAGAGTGAGGGATT+GGG | - | Chr2:57060312-57060331 | None:intergenic | 45.0% | |
AGGTTTACCGAAGAAATGGG+GGG | + | Chr2:57060770-57060789 | MsG0280009716.01.T01:intron | 45.0% | |
ATCAGGCTGTTCCTGATGTT+AGG | + | Chr2:57060843-57060862 | MsG0280009716.01.T01:intron | 45.0% | |
ATTGGTGAATCGAGAGTGGA+GGG | + | Chr2:57061094-57061113 | MsG0280009716.01.T01:CDS | 45.0% | |
CCGTAGACTCTCTTCTCAAA+TGG | + | Chr2:57060171-57060190 | MsG0280009716.01.T01:CDS | 45.0% | |
CGAGGTTTACCGAAGAAATG+GGG | + | Chr2:57060768-57060787 | MsG0280009716.01.T01:intron | 45.0% | |
CTAACAACCCCCCATTTCTT+CGG | - | Chr2:57060780-57060799 | None:intergenic | 45.0% | |
GAAGTCATCCGTGAAGGAAA+AGG | + | Chr2:57061273-57061292 | MsG0280009716.01.T01:CDS | 45.0% | |
GAGGTTTACCGAAGAAATGG+GGG | + | Chr2:57060769-57060788 | MsG0280009716.01.T01:intron | 45.0% | |
GTCGAGGTTTACCGAAGAAA+TGG | + | Chr2:57060766-57060785 | MsG0280009716.01.T01:intron | 45.0% | |
GTTGAAGATTGAGGGGGTTT+AGG | + | Chr2:57060865-57060884 | MsG0280009716.01.T01:intron | 45.0% | |
TCATGAAGGGTTCTGCTAAG+AGG | + | Chr2:57061183-57061202 | MsG0280009716.01.T01:intron | 45.0% | |
TGAGAATGTTGTTGCTGCGA+TGG | + | Chr2:57060735-57060754 | MsG0280009716.01.T01:CDS | 45.0% | |
TGAGATTGGTGAATCGAGAG+TGG | + | Chr2:57061090-57061109 | MsG0280009716.01.T01:CDS | 45.0% | |
! | CTCTTGCTTTGCCGTTTATC+AGG | + | Chr2:57060826-57060845 | MsG0280009716.01.T01:intron | 45.0% |
! | GAAGGTGGCTAAGTTGAGTA+TGG | + | Chr2:57060696-57060715 | MsG0280009716.01.T01:CDS | 45.0% |
! | GAGGGATTGGGATTTTGTGA+GGG | - | Chr2:57060300-57060319 | None:intergenic | 45.0% |
! | GATTGAGGGGGTTTAGGATT+TGG | + | Chr2:57060871-57060890 | MsG0280009716.01.T01:intron | 45.0% |
! | GTTGGTGAAGGATGAGAAGA+AGG | + | Chr2:57060901-57060920 | MsG0280009716.01.T01:CDS | 45.0% |
! | TGAGGGATTGGGATTTTGTG+AGG | - | Chr2:57060301-57060320 | None:intergenic | 45.0% |
!! | GAGGGTTGGTGAATAAGAAG+AGG | + | Chr2:57061112-57061131 | MsG0280009716.01.T01:intron | 45.0% |
!! | TGTTAGTGGTGGTGGTGATA+AGG | + | Chr2:57061054-57061073 | MsG0280009716.01.T01:CDS | 45.0% |
CCCAATAACCTCGGCAACAA+CGG | - | Chr2:57060550-57060569 | None:intergenic | 50.0% | |
CCGTTGTTGCCGAGGTTATT+GGG | + | Chr2:57060547-57060566 | MsG0280009716.01.T01:CDS | 50.0% | |
CGAAGAAATGGGGGGTTGTT+AGG | + | Chr2:57060778-57060797 | MsG0280009716.01.T01:intron | 50.0% | |
CGTTGTTGCCGAGGTTATTG+GGG | + | Chr2:57060548-57060567 | MsG0280009716.01.T01:CDS | 50.0% | |
GAATGTTGTTGCTGCGATGG+AGG | + | Chr2:57060738-57060757 | MsG0280009716.01.T01:CDS | 50.0% | |
GAGATGAGAGAGTGAGGGAT+TGG | - | Chr2:57060313-57060332 | None:intergenic | 50.0% | |
GATTGGTGAATCGAGAGTGG+AGG | + | Chr2:57061093-57061112 | MsG0280009716.01.T01:CDS | 50.0% | |
TGAGGACTGGGACTTGTAGT+GGG | + | Chr2:57060672-57060691 | MsG0280009716.01.T01:intron | 50.0% | |
TTCTGCAAATCCACCTGCAC+CGG | - | Chr2:57060601-57060620 | None:intergenic | 50.0% | |
TTGAGGACTGGGACTTGTAG+TGG | + | Chr2:57060671-57060690 | MsG0280009716.01.T01:intron | 50.0% | |
! | AGAGTCTACGGCTTTTGCGA+CGG | - | Chr2:57060162-57060181 | None:intergenic | 50.0% |
! | ATCGTCCGTTTGAGGCGAAA+AGG | + | Chr2:57060476-57060495 | MsG0280009716.01.T01:CDS | 50.0% |
! | GGGTTAACGCGACCTTTTGA+TGG | - | Chr2:57060280-57060299 | None:intergenic | 50.0% |
! | TGAGGGGGTTTAGGATTTGG+AGG | + | Chr2:57060874-57060893 | MsG0280009716.01.T01:intron | 50.0% |
!! | GACGGATTATCGTCCGTTTG+AGG | + | Chr2:57060468-57060487 | MsG0280009716.01.T01:CDS | 50.0% |
CTCTCTCATCTCCGCAGCAT+CGG | + | Chr2:57060321-57060340 | MsG0280009716.01.T01:intron | 55.0% | |
CTGCGGAGATGAGAGAGTGA+GGG | - | Chr2:57060318-57060337 | None:intergenic | 55.0% | |
GAAGAGGAAGATTCCGGTGC+AGG | + | Chr2:57060585-57060604 | MsG0280009716.01.T01:intron | 55.0% | |
GAGACACTGTTCCGATGCTG+CGG | - | Chr2:57060335-57060354 | None:intergenic | 55.0% | |
GCCGTTGTTGCCGAGGTTAT+TGG | + | Chr2:57060546-57060565 | MsG0280009716.01.T01:CDS | 55.0% | |
GTGAATCGAGAGTGGAGGGT+TGG | + | Chr2:57061098-57061117 | MsG0280009716.01.T01:intron | 55.0% | |
! | CTATTGTGCCGTTGTTGCCG+AGG | + | Chr2:57060539-57060558 | MsG0280009716.01.T01:CDS | 55.0% |
! | TACGGCTTTTGCGACGGTGT+CGG | - | Chr2:57060156-57060175 | None:intergenic | 55.0% |
!! | CTGGGACTTGTAGTGGGTGA+AGG | + | Chr2:57060678-57060697 | MsG0280009716.01.T01:intron | 55.0% |
!! | GGACTTGTAGTGGGTGAAGG+TGG | + | Chr2:57060681-57060700 | MsG0280009716.01.T01:intron | 55.0% |
ACGAAAGGGGGTGGCTGAGT+TGG | + | Chr2:57061314-57061333 | MsG0280009716.01.T01:CDS | 60.0% | |
GAGGAAGATTCCGGTGCAGG+TGG | + | Chr2:57060588-57060607 | MsG0280009716.01.T01:intron | 60.0% | |
GCTGCGGAGATGAGAGAGTG+AGG | - | Chr2:57060319-57060338 | None:intergenic | 60.0% | |
!! | GGTGTCGGCGTTGCTGGTTA+CGG | - | Chr2:57060141-57060160 | None:intergenic | 60.0% |
!! | TGCGATGGAGGGTGTTGTCG+AGG | + | Chr2:57060750-57060769 | MsG0280009716.01.T01:CDS | 60.0% |
! | GTCGGCGTTGCTGGTTACGG+TGG | - | Chr2:57060138-57060157 | None:intergenic | 65.0% |
!! | TGCGACGGTGTCGGCGTTGC+TGG | - | Chr2:57060147-57060166 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 57060131 | 57061342 | 57060131 | ID=MsG0280009716.01;Name=MsG0280009716.01 |
Chr2 | mRNA | 57060131 | 57061342 | 57060131 | ID=MsG0280009716.01.T01;Parent=MsG0280009716.01;Name=MsG0280009716.01.T01;_AED=0.21;_eAED=0.25;_QI=0|0|0|1|1|1|5|0|258 |
Chr2 | exon | 57060131 | 57060194 | 57060131 | ID=MsG0280009716.01.T01:exon:18675;Parent=MsG0280009716.01.T01 |
Chr2 | exon | 57060338 | 57060600 | 57060338 | ID=MsG0280009716.01.T01:exon:18676;Parent=MsG0280009716.01.T01 |
Chr2 | exon | 57060691 | 57060771 | 57060691 | ID=MsG0280009716.01.T01:exon:18677;Parent=MsG0280009716.01.T01 |
Chr2 | exon | 57060887 | 57061115 | 57060887 | ID=MsG0280009716.01.T01:exon:18678;Parent=MsG0280009716.01.T01 |
Chr2 | exon | 57061203 | 57061342 | 57061203 | ID=MsG0280009716.01.T01:exon:18679;Parent=MsG0280009716.01.T01 |
Chr2 | CDS | 57060131 | 57060194 | 57060131 | ID=MsG0280009716.01.T01:cds;Parent=MsG0280009716.01.T01 |
Chr2 | CDS | 57060338 | 57060600 | 57060338 | ID=MsG0280009716.01.T01:cds;Parent=MsG0280009716.01.T01 |
Chr2 | CDS | 57060691 | 57060771 | 57060691 | ID=MsG0280009716.01.T01:cds;Parent=MsG0280009716.01.T01 |
Chr2 | CDS | 57060887 | 57061115 | 57060887 | ID=MsG0280009716.01.T01:cds;Parent=MsG0280009716.01.T01 |
Chr2 | CDS | 57061203 | 57061342 | 57061203 | ID=MsG0280009716.01.T01:cds;Parent=MsG0280009716.01.T01 |
Gene Sequence |
Protein sequence |