AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046177.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046177.01.T01 MTR_4g102170 100.000 151 0 0 1 151 1 151 7.34e-109 306
MsG0880046177.01.T01 MTR_4g024550 94.040 151 9 0 1 151 1 151 3.34e-102 289
MsG0880046177.01.T01 MTR_5g011910 92.715 151 11 0 1 151 1 151 1.57e-100 285
MsG0880046177.01.T01 MTR_4g024265 92.035 113 9 0 1 113 1 113 9.67e-70 215
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046177.01.T01 AT4G00100 92.053 151 12 0 1 151 1 151 7.99e-101 286
MsG0880046177.01.T01 AT3G60770 92.053 151 12 0 1 151 1 151 1.99e-100 285

Find 57 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGATCGGTGTTATTCTT+AGG 0.199752 8:+70197611 MsG0880046177.01.T01:CDS
CCAGACTGGTGGGAGCTTCT+TGG 0.208703 8:-70198457 None:intergenic
TGCTGTTCTGCAGTCGCTTT+TGG 0.209015 8:+70199200 MsG0880046177.01.T01:three_prime_UTR
GAGCTGCGCGCTTTGTGATT+AGG 0.236941 8:-70197226 None:intergenic
ATCCTTCAGATGCAGTAAAA+TGG 0.243022 8:-70199426 None:intergenic
AGCTGCGCGCTTTGTGATTA+GGG 0.250350 8:-70197225 None:intergenic
CATCTGAAGGATACATTGTT+TGG 0.295241 8:+70199437 MsG0880046177.01.T01:three_prime_UTR
TTAACTAGTTCAAGTCTTCC+AGG 0.332262 8:-70199268 None:intergenic
ACTTGGAGTCCTTATCCTTT+CGG 0.353333 8:-70198377 None:intergenic
TCAAGAAGGCAGTTTCAATT+AGG 0.353735 8:+70198337 MsG0880046177.01.T01:CDS
TACAGATCCTCAGGAATTTC+CGG 0.365553 8:-70198306 None:intergenic
CACAAGAATCAACCTGAACT+TGG 0.390376 8:-70198394 None:intergenic
GCTCAAAGCTTCAGCAATCA+TGG 0.390594 8:+70197245 MsG0880046177.01.T01:exon
TATGCATATGCTGGAAATCT+TGG 0.391720 8:+70199396 MsG0880046177.01.T01:three_prime_UTR
TCAGATCGGTGTTATTCTTA+GGG 0.403625 8:+70197612 MsG0880046177.01.T01:CDS
AGTTTCAATTAGGAAGCATT+TGG 0.418745 8:+70198347 MsG0880046177.01.T01:CDS
CCAAGAAGCTCCCACCAGTC+TGG 0.424976 8:+70198457 MsG0880046177.01.T01:CDS
TCCTTCAGATGCAGTAAAAT+GGG 0.425309 8:-70199425 None:intergenic
TTTAAGTTATATGCATATGC+TGG 0.433097 8:+70199387 MsG0880046177.01.T01:three_prime_UTR
AAACTGCCTTCTTGATCAAA+TGG 0.434219 8:-70198329 None:intergenic
TATTTGCAAGTTTGCAAAGA+AGG 0.458801 8:+70197576 MsG0880046177.01.T01:CDS
GGAGAGGAACCGAAAGGATA+AGG 0.464398 8:+70198368 MsG0880046177.01.T01:CDS
AGGATAAGGACTCCAAGTTC+AGG 0.467196 8:+70198382 MsG0880046177.01.T01:CDS
TTTGGTTTCATGATCAGTCC+TGG 0.477897 8:+70199250 MsG0880046177.01.T01:three_prime_UTR
ATCAAATGGTACAGATCCTC+AGG 0.478375 8:-70198315 None:intergenic
TCACTGGCAGCAAAATCCTT+AGG 0.488968 8:+70197665 MsG0880046177.01.T01:CDS
CTCAAAGCTTCAGCAATCAT+GGG 0.490699 8:+70197246 MsG0880046177.01.T01:exon
CAAGTTCAGGTTGATTCTTG+TGG 0.500791 8:+70198395 MsG0880046177.01.T01:CDS
GTTATTCTTAGGGATTCTCA+TGG 0.504564 8:+70197622 MsG0880046177.01.T01:CDS
GCTCAAGTTAAGTTTATCAC+TGG 0.507100 8:+70197649 MsG0880046177.01.T01:CDS
CATGAGCCTTGAGGATCCTA+AGG 0.520024 8:-70197681 None:intergenic
ATCAACAACTGCCAGCACTT+TGG 0.526669 8:+70199144 MsG0880046177.01.T01:CDS
CCTCTGCTTTACCATACAAA+AGG 0.527826 8:+70197420 MsG0880046177.01.T01:CDS
ATTTGCAAGTTTGCAAAGAA+GGG 0.531484 8:+70197577 MsG0880046177.01.T01:CDS
GTAGAGGTCTTGAGCCATCC+TGG 0.536330 8:-70197449 None:intergenic
AGAATAACACCGATCTGAGA+TGG 0.551609 8:-70197607 None:intergenic
TCTCTAAGCAACCAAAGTGC+TGG 0.557410 8:-70199155 None:intergenic
CTTAGGATCCTCAAGGCTCA+TGG 0.558577 8:+70197682 MsG0880046177.01.T01:CDS
TCTGTACCATTTGATCAAGA+AGG 0.592710 8:+70198323 MsG0880046177.01.T01:CDS
ACTTACTACTTCCAGACTGG+TGG 0.595917 8:-70198468 None:intergenic
CCATACAAAAGGTCTGCACC+AGG 0.597287 8:+70197431 MsG0880046177.01.T01:CDS
ATCATGGGGCGTATGCATAG+TGG 0.599233 8:+70197261 MsG0880046177.01.T01:exon
GGTACTTACTACTTCCAGAC+TGG 0.601291 8:-70198471 None:intergenic
CAATTAGGAAGCATTTGGAG+AGG 0.603553 8:+70198352 MsG0880046177.01.T01:CDS
ATGGGGCGTATGCATAGTGG+CGG 0.611401 8:+70197264 MsG0880046177.01.T01:CDS
TGGGGCGTATGCATAGTGGC+GGG 0.622617 8:+70197265 MsG0880046177.01.T01:CDS
AGAACATACCATGAGCCTTG+AGG 0.623812 8:-70197690 None:intergenic
TGTAATAGCGAGCAAGACGG+TGG 0.633533 8:-70198428 None:intergenic
ACAAAAGGTCTGCACCAGGA+TGG 0.633754 8:+70197435 MsG0880046177.01.T01:CDS
CAAAATCCTTAGGATCCTCA+AGG 0.639899 8:+70197675 MsG0880046177.01.T01:CDS
CTGTTGTCATTTGAAAGATG+TGG 0.649779 8:+70199340 MsG0880046177.01.T01:three_prime_UTR
CTTACTACTTCCAGACTGGT+GGG 0.659946 8:-70198467 None:intergenic
GCATTTGGAGAGGAACCGAA+AGG 0.672061 8:+70198362 MsG0880046177.01.T01:CDS
GGTTTGACTCCATCTCAGAT+CGG 0.677869 8:+70197598 MsG0880046177.01.T01:CDS
TCAAAGCTTCAGCAATCATG+GGG 0.680472 8:+70197247 MsG0880046177.01.T01:exon
TCTTGTAATAGCGAGCAAGA+CGG 0.689009 8:-70198431 None:intergenic
ACTTGCACCGGAAATTCCTG+AGG 0.709274 8:+70198299 MsG0880046177.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACATAAAAGAAAAAAAAA+TGG - Chr8:70198573-70198592 None:intergenic 10.0%
!! CTATATATCTAATAATATAA+TGG + Chr8:70198867-70198886 MsG0880046177.01.T01:intron 10.0%
!! ATCAATATGAATAAACAAAT+AGG - Chr8:70198496-70198515 None:intergenic 15.0%
!! TCAATATGAATAAACAAATA+GGG - Chr8:70198495-70198514 None:intergenic 15.0%
!! TTTATATTGAAATTCTATTC+TGG + Chr8:70198935-70198954 MsG0880046177.01.T01:intron 15.0%
!!! GATTGATTTATTTGAATTAT+AGG + Chr8:70197543-70197562 MsG0880046177.01.T01:intron 15.0%
!!! TTTTGAATTGTTTCAATTTT+TGG + Chr8:70197377-70197396 MsG0880046177.01.T01:intron 15.0%
!! ACATTTAATACAATAGCATA+GGG - Chr8:70198674-70198693 None:intergenic 20.0%
!! AGATTATTTGATCTATTTGA+CGG + Chr8:70198637-70198656 MsG0880046177.01.T01:intron 20.0%
!! ATATTATAAGCACTTATGAT+AGG + Chr8:70198191-70198210 MsG0880046177.01.T01:intron 20.0%
!! ATTGACAAAAAAATGATGAT+GGG - Chr8:70197497-70197516 None:intergenic 20.0%
!! TGATTTATTTGAATTATAGG+TGG + Chr8:70197546-70197565 MsG0880046177.01.T01:intron 20.0%
!! TTATGTGAATTTAGATAAAC+AGG + Chr8:70198086-70198105 MsG0880046177.01.T01:intron 20.0%
!!! ATTTGTGTCATTATAGATTA+TGG + Chr8:70197737-70197756 MsG0880046177.01.T01:intron 20.0%
!!! GTTGAATAAAACAAAGTTTT+AGG + Chr8:70198784-70198803 MsG0880046177.01.T01:intron 20.0%
!!! GTTTTCAGTTTATTTACATA+TGG + Chr8:70197861-70197880 MsG0880046177.01.T01:intron 20.0%
!!! TAGTAAATGAGATTTCTTTT+GGG + Chr8:70198264-70198283 MsG0880046177.01.T01:intron 20.0%
!!! TAGTACTAGAAAAATGATTT+TGG + Chr8:70198545-70198564 MsG0880046177.01.T01:intron 20.0%
!!! TATATAGCTTTTGTTGAAAA+TGG - Chr8:70198854-70198873 None:intergenic 20.0%
!!! TTTGTGTCATTATAGATTAT+GGG + Chr8:70197738-70197757 MsG0880046177.01.T01:intron 20.0%
! AAAAATTACATCTTGTGTAG+AGG - Chr8:70197468-70197487 None:intergenic 25.0%
! ACTACCAAATAAGTACTTAT+GGG - Chr8:70197778-70197797 None:intergenic 25.0%
! ATTTAATACAATAGCATAGG+GGG - Chr8:70198672-70198691 None:intergenic 25.0%
! CACCAAAAAATACAAGATAT+TGG - Chr8:70199076-70199095 None:intergenic 25.0%
! CATTGACAAAAAAATGATGA+TGG - Chr8:70197498-70197517 None:intergenic 25.0%
! CATTTAATACAATAGCATAG+GGG - Chr8:70198673-70198692 None:intergenic 25.0%
! CTAAATTAAAACTAGAGCAT+AGG - Chr8:70198219-70198238 None:intergenic 25.0%
! CTTATGAAAACAGGTTATAT+TGG + Chr8:70198114-70198133 MsG0880046177.01.T01:intron 25.0%
! GAATGTTACATTTGATACTA+TGG + Chr8:70198907-70198926 MsG0880046177.01.T01:intron 25.0%
! GACATTTAATACAATAGCAT+AGG - Chr8:70198675-70198694 None:intergenic 25.0%
! TACTACCAAATAAGTACTTA+TGG - Chr8:70197779-70197798 None:intergenic 25.0%
! TTAAATGTCAACCTATTTGA+AGG + Chr8:70198686-70198705 MsG0880046177.01.T01:intron 25.0%
! TTATAGAAACAGTGTATTAC+AGG + Chr8:70198063-70198082 MsG0880046177.01.T01:intron 25.0%
!! AGTAAATGAGATTTCTTTTG+GGG + Chr8:70198265-70198284 MsG0880046177.01.T01:intron 25.0%
!! CATTTTTCTACTCTTTCTAT+TGG + Chr8:70198750-70198769 MsG0880046177.01.T01:intron 25.0%
!! GTAGTAAATGAGATTTCTTT+TGG + Chr8:70198263-70198282 MsG0880046177.01.T01:intron 25.0%
!! TTTAAGTTATATGCATATGC+TGG + Chr8:70199387-70199406 MsG0880046177.01.T01:three_prime_UTR 25.0%
!!! ATACATTGTTTGGTTTTTGA+AGG + Chr8:70199447-70199466 MsG0880046177.01.T01:three_prime_UTR 25.0%
!!! TACATTGTTTGGTTTTTGAA+GGG + Chr8:70199448-70199467 MsG0880046177.01.T01:three_prime_UTR 25.0%
!!! TAGAATGTTATTGCTTTTGT+CGG + Chr8:70199043-70199062 MsG0880046177.01.T01:intron 25.0%
!!! TCAATTTTTGGTTACAGTAA+GGG + Chr8:70197389-70197408 MsG0880046177.01.T01:intron 25.0%
!!! TGCCAATATCTTGTATTTTT+TGG + Chr8:70199071-70199090 MsG0880046177.01.T01:intron 25.0%
!!! TTCAATTTTTGGTTACAGTA+AGG + Chr8:70197388-70197407 MsG0880046177.01.T01:intron 25.0%
AAGCACTTGTAAAACTGATT+AGG + Chr8:70197979-70197998 MsG0880046177.01.T01:intron 30.0%
AAGCACTTGTGAAATTGATT+AGG + Chr8:70198035-70198054 MsG0880046177.01.T01:intron 30.0%
ACTCAACAAATCCTTCAAAT+AGG - Chr8:70198700-70198719 None:intergenic 30.0%
AGAGACAAGTCATTAATATC+AGG - Chr8:70199114-70199133 None:intergenic 30.0%
ATGAAATTGCGATTGAGAAT+GGG - Chr8:70197304-70197323 None:intergenic 30.0%
ATTTGCAAGTTTGCAAAGAA+GGG + Chr8:70197577-70197596 MsG0880046177.01.T01:CDS 30.0%
GACAAAAGCAATAACATTCT+AGG - Chr8:70199044-70199063 None:intergenic 30.0%
TAACCTAAAATTCTAGCATC+AGG - Chr8:70199007-70199026 None:intergenic 30.0%
TATTTGCAAGTTTGCAAAGA+AGG + Chr8:70197576-70197595 MsG0880046177.01.T01:CDS 30.0%
TCACTTCACACATAAAAACA+TGG - Chr8:70198617-70198636 None:intergenic 30.0%
TCTACAGCTGATAAAAAAGA+AGG - Chr8:70199315-70199334 None:intergenic 30.0%
TTGACCCATAAGTACTTATT+TGG + Chr8:70197771-70197790 MsG0880046177.01.T01:intron 30.0%
TTGTTGAAAATGGATATCCA+CGG - Chr8:70198844-70198863 None:intergenic 30.0%
TTTCACAAAAATCGTCGTTT+CGG + Chr8:70197192-70197211 MsG0880046177.01.T01:five_prime_UTR 30.0%
!! AGTTTCAATTAGGAAGCATT+TGG + Chr8:70198347-70198366 MsG0880046177.01.T01:CDS 30.0%
!! TCATTTTTCTAGTACTACCA+CGG - Chr8:70198542-70198561 None:intergenic 30.0%
!!! TTGCTCGAATGTAGTTTTTT+TGG + Chr8:70199232-70199251 MsG0880046177.01.T01:three_prime_UTR 30.0%
!!! TTTCTTTTGGGGTTGATTTT+AGG + Chr8:70198276-70198295 MsG0880046177.01.T01:intron 30.0%
AAACTGCCTTCTTGATCAAA+TGG - Chr8:70198332-70198351 None:intergenic 35.0%
ATCCTTCAGATGCAGTAAAA+TGG - Chr8:70199429-70199448 None:intergenic 35.0%
CAGGTATAGCTTATGAAAAC+AGG + Chr8:70198105-70198124 MsG0880046177.01.T01:intron 35.0%
CATCTGAAGGATACATTGTT+TGG + Chr8:70199437-70199456 MsG0880046177.01.T01:three_prime_UTR 35.0%
GAGTAGAAAAATGTCTGACA+AGG - Chr8:70198743-70198762 None:intergenic 35.0%
GATGAAATTGCGATTGAGAA+TGG - Chr8:70197305-70197324 None:intergenic 35.0%
GCTCAAGTTAAGTTTATCAC+TGG + Chr8:70197649-70197668 MsG0880046177.01.T01:CDS 35.0%
GTTATTCTTAGGGATTCTCA+TGG + Chr8:70197622-70197641 MsG0880046177.01.T01:CDS 35.0%
TATGCATATGCTGGAAATCT+TGG + Chr8:70199396-70199415 MsG0880046177.01.T01:three_prime_UTR 35.0%
TCAAGAAGGCAGTTTCAATT+AGG + Chr8:70198337-70198356 MsG0880046177.01.T01:CDS 35.0%
TCCTTCAGATGCAGTAAAAT+GGG - Chr8:70199428-70199447 None:intergenic 35.0%
TCTGTACCATTTGATCAAGA+AGG + Chr8:70198323-70198342 MsG0880046177.01.T01:CDS 35.0%
TGAAATTGCGATTGAGAATG+GGG - Chr8:70197303-70197322 None:intergenic 35.0%
TTAACTAGTTCAAGTCTTCC+AGG - Chr8:70199271-70199290 None:intergenic 35.0%
TTATTTACATATGGCGTGTG+TGG + Chr8:70197870-70197889 MsG0880046177.01.T01:intron 35.0%
! ATAAAGAAGCGCATCAAACA+AGG - Chr8:70198963-70198982 None:intergenic 35.0%
! CTGTTGTCATTTGAAAGATG+TGG + Chr8:70199340-70199359 MsG0880046177.01.T01:three_prime_UTR 35.0%
! TTGATTGTCAATGTGTTGCT+TGG + Chr8:70198511-70198530 MsG0880046177.01.T01:intron 35.0%
!! ATGTTATTGCTTTTGTCGGT+TGG + Chr8:70199047-70199066 MsG0880046177.01.T01:intron 35.0%
!! CATTTTTCTAGTACTACCAC+GGG - Chr8:70198541-70198560 None:intergenic 35.0%
!! TCAGATCGGTGTTATTCTTA+GGG + Chr8:70197612-70197631 MsG0880046177.01.T01:CDS 35.0%
ACTTGGAGTCCTTATCCTTT+CGG - Chr8:70198380-70198399 None:intergenic 40.0%
AGAATAACACCGATCTGAGA+TGG - Chr8:70197610-70197629 None:intergenic 40.0%
ATCAAATGGTACAGATCCTC+AGG - Chr8:70198318-70198337 None:intergenic 40.0%
CAAAATCCTTAGGATCCTCA+AGG + Chr8:70197675-70197694 MsG0880046177.01.T01:CDS 40.0%
CACAAGAATCAACCTGAACT+TGG - Chr8:70198397-70198416 None:intergenic 40.0%
CCTCTGCTTTACCATACAAA+AGG + Chr8:70197420-70197439 MsG0880046177.01.T01:CDS 40.0%
CTAAAATTCTAGCATCAGGC+AGG - Chr8:70199003-70199022 None:intergenic 40.0%
CTCAAAGCTTCAGCAATCAT+GGG + Chr8:70197246-70197265 MsG0880046177.01.T01:exon 40.0%
GCTCTCTTAATCAGTTTCAC+AGG - Chr8:70197931-70197950 None:intergenic 40.0%
TACAGATCCTCAGGAATTTC+CGG - Chr8:70198309-70198328 None:intergenic 40.0%
TCAAAGCTTCAGCAATCATG+GGG + Chr8:70197247-70197266 MsG0880046177.01.T01:exon 40.0%
TCTTGTAATAGCGAGCAAGA+CGG - Chr8:70198434-70198453 None:intergenic 40.0%
! ACCCATTTTACTGCATCTGA+AGG + Chr8:70199424-70199443 MsG0880046177.01.T01:three_prime_UTR 40.0%
! CCTTTTGTATGGTAAAGCAG+AGG - Chr8:70197423-70197442 None:intergenic 40.0%
! CTGCCTGATGCTAGAATTTT+AGG + Chr8:70199001-70199020 MsG0880046177.01.T01:intron 40.0%
! TTTGGTTTCATGATCAGTCC+TGG + Chr8:70199250-70199269 MsG0880046177.01.T01:three_prime_UTR 40.0%
!! ATGTGGCTGACTTCAGTTTT+TGG + Chr8:70199357-70199376 MsG0880046177.01.T01:three_prime_UTR 40.0%
!! CAAGTTCAGGTTGATTCTTG+TGG + Chr8:70198395-70198414 MsG0880046177.01.T01:CDS 40.0%
!! CAATTAGGAAGCATTTGGAG+AGG + Chr8:70198352-70198371 MsG0880046177.01.T01:CDS 40.0%
!! CTCAGATCGGTGTTATTCTT+AGG + Chr8:70197611-70197630 MsG0880046177.01.T01:CDS 40.0%
!!! GTTGATTTTAGGACTTGCAC+CGG + Chr8:70198287-70198306 MsG0880046177.01.T01:intron 40.0%
ACTTACTACTTCCAGACTGG+TGG - Chr8:70198471-70198490 None:intergenic 45.0%
AGAACATACCATGAGCCTTG+AGG - Chr8:70197693-70197712 None:intergenic 45.0%
AGGATAAGGACTCCAAGTTC+AGG + Chr8:70198382-70198401 MsG0880046177.01.T01:CDS 45.0%
ATCAACAACTGCCAGCACTT+TGG + Chr8:70199144-70199163 MsG0880046177.01.T01:CDS 45.0%
CTTACTACTTCCAGACTGGT+GGG - Chr8:70198470-70198489 None:intergenic 45.0%
GCTCAAAGCTTCAGCAATCA+TGG + Chr8:70197245-70197264 MsG0880046177.01.T01:exon 45.0%
GGTACTTACTACTTCCAGAC+TGG - Chr8:70198474-70198493 None:intergenic 45.0%
GGTTTGACTCCATCTCAGAT+CGG + Chr8:70197598-70197617 MsG0880046177.01.T01:CDS 45.0%
TCACTGGCAGCAAAATCCTT+AGG + Chr8:70197665-70197684 MsG0880046177.01.T01:CDS 45.0%
TCTCTAAGCAACCAAAGTGC+TGG - Chr8:70199158-70199177 None:intergenic 45.0%
TTGCGATTGAGAATGGGGAA+TGG - Chr8:70197298-70197317 None:intergenic 45.0%
ACAAAAGGTCTGCACCAGGA+TGG + Chr8:70197435-70197454 MsG0880046177.01.T01:CDS 50.0%
ACTTGCACCGGAAATTCCTG+AGG + Chr8:70198299-70198318 MsG0880046177.01.T01:CDS 50.0%
AGCTGCGCGCTTTGTGATTA+GGG - Chr8:70197228-70197247 None:intergenic 50.0%
ATCATGGGGCGTATGCATAG+TGG + Chr8:70197261-70197280 MsG0880046177.01.T01:exon 50.0%
CATGAGCCTTGAGGATCCTA+AGG - Chr8:70197684-70197703 None:intergenic 50.0%
CCATACAAAAGGTCTGCACC+AGG + Chr8:70197431-70197450 MsG0880046177.01.T01:CDS 50.0%
CTTAGGATCCTCAAGGCTCA+TGG + Chr8:70197682-70197701 MsG0880046177.01.T01:CDS 50.0%
GCATTTGGAGAGGAACCGAA+AGG + Chr8:70198362-70198381 MsG0880046177.01.T01:CDS 50.0%
GGAGAGGAACCGAAAGGATA+AGG + Chr8:70198368-70198387 MsG0880046177.01.T01:CDS 50.0%
TGTAATAGCGAGCAAGACGG+TGG - Chr8:70198431-70198450 None:intergenic 50.0%
TGTCTTCGTGTTTGCTTCCG+TGG + Chr8:70198824-70198843 MsG0880046177.01.T01:intron 50.0%
! CCTGGTGCAGACCTTTTGTA+TGG - Chr8:70197434-70197453 None:intergenic 50.0%
!! TGCTGTTCTGCAGTCGCTTT+TGG + Chr8:70199200-70199219 MsG0880046177.01.T01:three_prime_UTR 50.0%
ATGGGGCGTATGCATAGTGG+CGG + Chr8:70197264-70197283 MsG0880046177.01.T01:CDS 55.0%
GAGCTGCGCGCTTTGTGATT+AGG - Chr8:70197229-70197248 None:intergenic 55.0%
GTAGAGGTCTTGAGCCATCC+TGG - Chr8:70197452-70197471 None:intergenic 55.0%
TCTAGCATCAGGCAGGCATG+TGG - Chr8:70198996-70199015 None:intergenic 55.0%
!! TGTGTTGCTTGGTTTGCCCG+TGG + Chr8:70198522-70198541 MsG0880046177.01.T01:intron 55.0%
CCAAGAAGCTCCCACCAGTC+TGG + Chr8:70198457-70198476 MsG0880046177.01.T01:CDS 60.0%
CCAGACTGGTGGGAGCTTCT+TGG - Chr8:70198460-70198479 None:intergenic 60.0%
TGGGGCGTATGCATAGTGGC+GGG + Chr8:70197265-70197284 MsG0880046177.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 70197184 70199468 70197184 ID=MsG0880046177.01;Name=MsG0880046177.01
Chr8 mRNA 70197184 70199468 70197184 ID=MsG0880046177.01.T01;Parent=MsG0880046177.01;Name=MsG0880046177.01.T01;_AED=0.49;_eAED=0.49;_QI=80|1|1|1|0.5|0.4|5|294|151
Chr8 exon 70197184 70197286 70197184 ID=MsG0880046177.01.T01:exon:27573;Parent=MsG0880046177.01.T01
Chr8 exon 70197406 70197478 70197406 ID=MsG0880046177.01.T01:exon:27574;Parent=MsG0880046177.01.T01
Chr8 exon 70197565 70197703 70197565 ID=MsG0880046177.01.T01:exon:27575;Parent=MsG0880046177.01.T01
Chr8 exon 70198298 70198484 70198298 ID=MsG0880046177.01.T01:exon:27576;Parent=MsG0880046177.01.T01
Chr8 exon 70199141 70199468 70199141 ID=MsG0880046177.01.T01:exon:27577;Parent=MsG0880046177.01.T01
Chr8 five_prime_UTR 70197184 70197263 70197184 ID=MsG0880046177.01.T01:five_prime_utr;Parent=MsG0880046177.01.T01
Chr8 CDS 70197264 70197286 70197264 ID=MsG0880046177.01.T01:cds;Parent=MsG0880046177.01.T01
Chr8 CDS 70197406 70197478 70197406 ID=MsG0880046177.01.T01:cds;Parent=MsG0880046177.01.T01
Chr8 CDS 70197565 70197703 70197565 ID=MsG0880046177.01.T01:cds;Parent=MsG0880046177.01.T01
Chr8 CDS 70198298 70198484 70198298 ID=MsG0880046177.01.T01:cds;Parent=MsG0880046177.01.T01
Chr8 CDS 70199141 70199174 70199141 ID=MsG0880046177.01.T01:cds;Parent=MsG0880046177.01.T01
Chr8 three_prime_UTR 70199175 70199468 70199175 ID=MsG0880046177.01.T01:three_prime_utr;Parent=MsG0880046177.01.T01
Gene Sequence

>MsG0880046177.01.T01

ATGGGGCGTATGCATAGTGGCGGTAAGGGTATTTCATCCTCTGCTTTACCATACAAAAGGTCTGCACCAGGATGGCTCAAGACCTCTACACAAGATGTGGAAGAGACTATTTGCAAGTTTGCAAAGAAGGGTTTGACTCCATCTCAGATCGGTGTTATTCTTAGGGATTCTCATGGAATTGCTCAAGTTAAGTTTATCACTGGCAGCAAAATCCTTAGGATCCTCAAGGCTCATGGACTTGCACCGGAAATTCCTGAGGATCTGTACCATTTGATCAAGAAGGCAGTTTCAATTAGGAAGCATTTGGAGAGGAACCGAAAGGATAAGGACTCCAAGTTCAGGTTGATTCTTGTGGAGAGCAGAATCCACCGTCTTGCTCGCTATTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTACGAATCAACAACTGCCAGCACTTTGGTTGCTTAG

Protein sequence

>MsG0880046177.01.T01

MGRMHSGGKGISSSALPYKRSAPGWLKTSTQDVEETICKFAKKGLTPSQIGVILRDSHGIAQVKFITGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA*