AlfalfaGEDB | MsG0280009299.01

M. sativa cultivar ZhongmuNo.1 / MsG0280009299.01

KEGG: K12194
GO: GO:0007034
PFAM: PF03357 PF16712

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009299.01.T01	XP_022754926.1	87.97	133	16	0	104	236	86	218	8.79E-60	198

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009299.01.T01	Q9SZE4	80.597	134	25	1	104	236	86	219	3.77E-54	176

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009299.01.T01	A0A6P5ZQV1	87.970	133	16	0	104	236	86	218	4.20e-60	198

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180001063.01	MsG0280009299.01	0.822906	1.843565e-53	1.563751e-50
MsG0180004926.01	MsG0280009299.01	0.807516	4.865002e-50	2.715326e-47
MsG0180004943.01	MsG0280009299.01	0.806517	7.915711e-50	4.305103e-47
MsG0280007529.01	MsG0280009299.01	0.806721	7.169379e-50	3.919648e-47
MsG0280009299.01	MsG0280009383.01	0.817835	2.683730e-52	1.975864e-49
MsG0280009299.01	MsG0280010722.01	0.802333	5.895786e-49	2.880456e-46
MsG0280009299.01	MsG0280011175.01	0.809990	1.439648e-50	8.577175e-48
MsG0280009299.01	MsG0380012330.01	0.836605	8.486201e-57	1.074716e-53
MsG0280009299.01	MsG0480019795.01	0.805267	1.449995e-49	7.637248e-47
MsG0280009299.01	MsG0480022259.01	0.816667	4.913411e-52	3.503493e-49

Showing 1 to 10 of 23 entries

Previous1 2 3Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009299.01.T01	MTR_6g090515	91.729	133	11	0	104	236	88	220	1.29e-63	197
MsG0280009299.01.T01	MTR_8g102030	79.699	133	25	2	104	236	92	222	7.44e-46	152
MsG0280009299.01.T01	MTR_8g102020	63.910	133	47	1	104	236	74	205	1.39e-41	141
MsG0280009299.01.T01	MTR_7g089090	89.474	76	8	0	34	109	169	244	1.33e-37	137
MsG0280009299.01.T01	MTR_5g088860	56.579	76	33	0	34	109	168	243	1.14e-19	87.4
MsG0280009299.01.T01	MTR_5g088860	56.579	76	33	0	34	109	190	265	1.17e-19	87.4
MsG0280009299.01.T01	MTR_3g045180	53.947	76	35	0	34	109	164	239	7.52e-18	82.4
MsG0280009299.01.T01	MTR_6g079040	82.222	45	7	1	33	77	119	162	1.16e-14	70.1

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009299.01.T01	AT4G29160	80.597	134	25	1	104	236	59	192	1.61e-55	176
MsG0280009299.01.T01	AT4G29160	80.597	134	25	1	104	236	86	219	3.84e-55	176
MsG0280009299.01.T01	AT4G29160	80.597	134	25	1	104	236	86	219	3.84e-55	176
MsG0280009299.01.T01	AT2G19830	77.612	134	22	3	104	236	68	194	2.21e-50	163
MsG0280009299.01.T01	AT2G19830	77.612	134	22	3	104	236	87	213	2.45e-50	164
MsG0280009299.01.T01	AT2G40820	65.385	78	25	1	34	109	61	138	1.61e-24	100
MsG0280009299.01.T01	AT3G56480	62.821	78	27	1	34	109	168	245	1.64e-24	101
MsG0280009299.01.T01	AT2G40820	65.385	78	25	1	34	109	183	260	4.26e-24	100
MsG0280009299.01.T01	AT2G40820	65.385	78	25	1	34	109	171	248	4.46e-24	100
MsG0280009299.01.T01	AT2G40820	65.385	78	25	1	34	109	171	248	4.46e-24	100

Showing 1 to 10 of 14 entries

Previous1 2Next

Find 69 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAGCAGCTGCACCAAT+TGG	0.420089	2:-49733320	None:intergenic
AAATCTGTCGGTTGTGTCAC+GGG	0.480701	2:-49733984	None:intergenic
AACAGGAGCAACTACTATGA+AGG	0.534991	2:+49733094	MsG0280009299.01.T01:CDS
AACTTGATATGGCAAGCTTA+AGG	0.434801	2:+49729573	None:intergenic
AATCGAGAGTGCTAGAGCAG+TGG	0.666858	2:+49729828	MsG0280009299.01.T01:CDS
AATTCATCTTCCTCAGGCGT+CGG	0.583818	2:-49733913	None:intergenic
ACAACAATCTAAAATAATTC+TGG	0.328240	2:-49734109	None:intergenic
ACTGGTGGAAGAGGTTCAAG+AGG	0.653599	2:+49730139	MsG0280009299.01.T01:CDS
AGAAATCTGCTTCTTCCTTC+TGG	0.259872	2:+49734249	MsG0280009299.01.T01:three_prime_UTR
AGAAGGTGCTAAAGCCACCA+CGG	0.700426	2:+49733052	MsG0280009299.01.T01:CDS

Showing 1 to 10 of 69 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATAAATTCAGAATGCCACA+TGG	-	Chr2:49733744-49733763	None:intergenic	30.0%
ACTATGTATAAACCCAAATG+TGG	+	Chr2:49731925-49731944	MsG0280009299.01.T01:intron	30.0%
AGAAGCCTATAGAACAAAAA+TGG	-	Chr2:49729758-49729777	None:intergenic	30.0%
AGTTAACGTAACATAATAGC+TGG	-	Chr2:49730072-49730091	None:intergenic	30.0%
ATAGAACCACTCTGATTAAT+AGG	-	Chr2:49732785-49732804	None:intergenic	30.0%
ATATAGAGAGCCTAATCAAT+TGG	-	Chr2:49732291-49732310	None:intergenic	30.0%
ATTAAGCAATGTACCTTACT+TGG	-	Chr2:49730191-49730210	None:intergenic	30.0%
ATTCACCAGATTAATATGTG+GGG	+	Chr2:49732107-49732126	MsG0280009299.01.T01:intron	30.0%
CAAGAAAGAAAGAATATACC+AGG	+	Chr2:49732750-49732769	MsG0280009299.01.T01:intron	30.0%
CATTACTTGGACTATGAATA+GGG	+	Chr2:49730373-49730392	MsG0280009299.01.T01:intron	30.0%

Showing 1 to 10 of 242 entries

Previous1 2 3 4 5…25Next

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	49729581	49734351	49729581	ID=MsG0280009299.01;Name=MsG0280009299.01
Chr2	mRNA	49729581	49734351	49729581	ID=MsG0280009299.01.T01;Parent=MsG0280009299.01;Name=MsG0280009299.01.T01;_AED=0.44;_eAED=0.45;_QI=0\|0.8\|0.83\|1\|0.8\|0.83\|6\|385\|236
Chr2	exon	49729581	49729682	49729581	ID=MsG0280009299.01.T01:exon:45205;Parent=MsG0280009299.01.T01
Chr2	exon	49729772	49729912	49729772	ID=MsG0280009299.01.T01:exon:45206;Parent=MsG0280009299.01.T01
Chr2	exon	49730128	49730196	49730128	ID=MsG0280009299.01.T01:exon:45207;Parent=MsG0280009299.01.T01
Chr2	exon	49733041	49733132	49733041	ID=MsG0280009299.01.T01:exon:45208;Parent=MsG0280009299.01.T01
Chr2	exon	49733235	49733349	49733235	ID=MsG0280009299.01.T01:exon:45209;Parent=MsG0280009299.01.T01
Chr2	exon	49733775	49734351	49733775	ID=MsG0280009299.01.T01:exon:45210;Parent=MsG0280009299.01.T01
Chr2	CDS	49729581	49729682	49729581	ID=MsG0280009299.01.T01:cds;Parent=MsG0280009299.01.T01
Chr2	CDS	49729772	49729912	49729772	ID=MsG0280009299.01.T01:cds;Parent=MsG0280009299.01.T01
Chr2	CDS	49730128	49730196	49730128	ID=MsG0280009299.01.T01:cds;Parent=MsG0280009299.01.T01
Chr2	CDS	49733041	49733132	49733041	ID=MsG0280009299.01.T01:cds;Parent=MsG0280009299.01.T01
Chr2	CDS	49733235	49733349	49733235	ID=MsG0280009299.01.T01:cds;Parent=MsG0280009299.01.T01
Chr2	CDS	49733775	49733966	49733775	ID=MsG0280009299.01.T01:cds;Parent=MsG0280009299.01.T01
Chr2	three_prime_UTR	49733967	49734351	49733967	ID=MsG0280009299.01.T01:three_prime_utr;Parent=MsG0280009299.01.T01

Gene Sequence

>MsG0280009299.01.T01

ATGGCAAGCTTAAGGTGGTATAGGTACAAAGGGAATGATGATGGTACTGATCAAGTTAGTGGTGTTGAACTTGATAAAGTGTCTAAACAATCTGAACCAAAGGCTTCTGAAGATGCTAAAAGGTTGGTTAATCAAGAGAAGTCTTTTGCTTGTGCCGAAATCGAGAGTGCTAGAGCAGTGGTGCTGGGAATTGGGGAGGCACTTGAAGAACAAGAAAAAGTTACACAAGCTTCTAAACCACAGGATGTGGATGGACTGGTGGAAGAGGTTCAAGAGGCTAGAAGAATCAGATTGCTGCATCAGCCAAGTAAGATGATAATGTTAGAAGGTGCTAAAGCCACCACGGAAATAGTAGATGCGTTAAGAACAGGAGCAACTACTATGAAGGCTATGCAGAAAGCAACGAATATTGATGATGTCGACAAGACCATGGACGAGATAAATGAACAGACTGAGAATATGAAGCAGATTCAAGAAGCATTGTCAGCTCCAATTGGTGCAGCTGCTTATTTTGACGAGCACGAACTGGAAGCAGAACTTGAAGAATTGGAGAATGCTGAGTTGGAAGAACAACTTCTTCAGCCAACATTTACAGCTCCTGCTCCCACAGTGCATGTCTCAGCTGGGAGGCAACCTGCACGTCCTGTTCCTGCAAAGCCGACGCCTGAGGAAGATGAATTGGCAGCTCTGCAGGCTGAGATGGCACTTTGA

Protein sequence

>MsG0280009299.01.T01

MASLRWYRYKGNDDGTDQVSGVELDKVSKQSEPKASEDAKRLVNQEKSFACAEIESARAVVLGIGEALEEQEKVTQASKPQDVDGLVEEVQEARRIRLLHQPSKMIMLEGAKATTEIVDALRTGATTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPIGAAAYFDEHELEAELEELENAELEEQLLQPTFTAPAPTVHVSAGRQPARPVPAKPTPEEDELAALQAEMAL*