AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004943.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004943.01.T02 MTR_1g090110 58.571 70 17 3 6 73 520 579 1.63e-13 64.3
MsG0180004943.01.T01 MTR_1g090110 52.419 124 44 3 3 126 301 409 4.71e-24 96.3
MsG0180004943.01.T01 MTR_6g071555 45.802 131 42 3 3 126 302 410 1.24e-21 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 71 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGAAATAAGATGCAATT+TGG 0.209045 1:-84736645 MsG0180004943.01.T01:three_prime_UTR
CAGGAATACTGAGGCACTTT+TGG 0.271426 1:-84735603 MsG0180004943.01.T01:three_prime_UTR
CATATCTAACATCAAAACTA+TGG 0.272962 1:-84736589 MsG0180004943.01.T01:three_prime_UTR
ACATCAAAACTATGGGATTA+AGG 0.276563 1:-84736581 MsG0180004943.01.T01:three_prime_UTR
ACAAGACTTTGAGTTGTTAC+TGG 0.309829 1:+84735571 None:intergenic
AGCACTTCTACCGCTGTTCT+TGG 0.312811 1:+84737081 None:intergenic
TTTAGAATATATTTGTGATA+TGG 0.320511 1:+84735182 None:intergenic
GTGCCTGAAGATCTTCAATC+TGG 0.330729 1:+84736915 None:intergenic
TCTGCTTAATCTAGGAATAA+AGG 0.349403 1:-84735003 MsG0180004943.01.T01:intron
CCAGAATGGGGTTTGCAGTC+AGG 0.354088 1:-84735622 MsG0180004943.01.T01:intron
TCAAGCACCAAATCAAATCT+TGG 0.367340 1:-84736323 MsG0180004943.01.T01:three_prime_UTR
GGCCCAGATTGAAGATCTTC+AGG 0.372758 1:-84736918 MsG0180004943.01.T01:CDS
GGAGAAATAAGATGCAATTT+GGG 0.386899 1:-84736644 MsG0180004943.01.T01:three_prime_UTR
TATTCTTATCTGCTTAATCT+AGG 0.394240 1:-84735011 MsG0180004943.01.T01:intron
TTTGGGTTCTGAGGAGCATA+TGG 0.396221 1:-84736627 MsG0180004943.01.T01:three_prime_UTR
GTTTCTCCTTAGTTTGTGTT+GGG 0.400145 1:+84736266 None:intergenic
GAGGAGCATATGGCTCTTTG+AGG 0.401801 1:-84736617 MsG0180004943.01.T01:three_prime_UTR
TAGATTAAGCAGATAAGAAT+AGG 0.403801 1:+84735013 None:intergenic
ACATAAATGTAGATTAGATA+TGG 0.406622 1:-84737109 MsG0180004943.01.T01:intron
AGTTTCTCCTTAGTTTGTGT+TGG 0.414236 1:+84736265 None:intergenic
TGATACAGAGTGGTGCAAAT+TGG 0.430810 1:+84736882 None:intergenic
GTGGAGCTCACCTGCTGCAT+TGG 0.444200 1:+84734934 None:intergenic
CAACTCAAAGTCTTGTTAGA+AGG 0.445935 1:-84735564 MsG0180004943.01.T01:intron
CTGGGCCATCTTAGAAATCC+TGG 0.446969 1:+84736934 None:intergenic
CAAGCACCAAATCAAATCTT+GGG 0.448230 1:-84736322 MsG0180004943.01.T01:three_prime_UTR
CAGCGGTAGAAGTGCTTGCT+CGG 0.453199 1:-84737074 MsG0180004943.01.T01:CDS
AGGAGCATATGGCTCTTTGA+GGG 0.481700 1:-84736616 MsG0180004943.01.T01:three_prime_UTR
CCCCATCAGATTCTGTATAG+TGG 0.488291 1:+84736975 None:intergenic
TTGTGTTGGGTAATATATCA+AGG 0.498945 1:+84736279 None:intergenic
GCAACCTCATGACTCAATAG+AGG 0.513815 1:+84736556 None:intergenic
AGCTCACCTGCTGCATTGGA+TGG 0.514909 1:+84734938 None:intergenic
ATATTACCCAACACAAACTA+AGG 0.516639 1:-84736272 MsG0180004943.01.T01:three_prime_UTR
GCGAACCAGGATTTCTAAGA+TGG 0.523857 1:-84736939 MsG0180004943.01.T01:CDS
ATTTGCACCACTCTGTATCA+AGG 0.535116 1:-84736879 MsG0180004943.01.T01:intron
ACAACATGAACGAAAGGAAA+AGG 0.537455 1:+84737016 None:intergenic
TTGTAGAGGAGAGGCGAACC+AGG 0.537982 1:-84736952 MsG0180004943.01.T01:CDS
ATATCTAACATCAAAACTAT+GGG 0.539136 1:-84736588 MsG0180004943.01.T01:three_prime_UTR
TGTTGTCCATCCAATGCAGC+AGG 0.545788 1:-84734944 MsG0180004943.01.T01:intron
ACCACTATACAGAATCTGAT+GGG 0.547635 1:-84736976 MsG0180004943.01.T01:CDS
AAGATGCAATTTGGGTTCTG+AGG 0.550639 1:-84736636 MsG0180004943.01.T01:three_prime_UTR
TCACTTGACACATGAGATGC+AGG 0.552718 1:-84735223 MsG0180004943.01.T01:intron
AGCGGTAGAAGTGCTTGCTC+GGG 0.556368 1:-84737073 MsG0180004943.01.T01:CDS
TGCCTGAAGATCTTCAATCT+GGG 0.556560 1:+84736916 None:intergenic
GAGCATATGGCTCTTTGAGG+GGG 0.558031 1:-84736614 MsG0180004943.01.T01:three_prime_UTR
AAAGTCAGACCTACGGCACC+AGG 0.558398 1:-84734973 MsG0180004943.01.T01:three_prime_UTR
AGAATCTGATGGGGTTGTAG+AGG 0.563910 1:-84736966 MsG0180004943.01.T01:CDS
GAAGCTCAAATACTCTGTAT+CGG 0.569771 1:-84738016 MsG0180004943.01.T01:CDS
TACCACTATACAGAATCTGA+TGG 0.573551 1:-84736977 MsG0180004943.01.T01:CDS
TGCTTGCTCGGGAGAAAACA+TGG 0.573751 1:-84737062 MsG0180004943.01.T01:CDS
AGGATCATGGATTTCCGTGA+TGG 0.576767 1:-84738055 None:intergenic
TTGGATGATTCTCTACGGTA+AGG 0.576995 1:-84736668 MsG0180004943.01.T01:exon
GGAGCATATGGCTCTTTGAG+GGG 0.589661 1:-84736615 MsG0180004943.01.T01:three_prime_UTR
AAACCTTGGATGATTCTCTA+CGG 0.590014 1:-84736673 MsG0180004943.01.T01:exon
GGATGGACAACAAGGAAACC+TGG 0.594452 1:+84734955 None:intergenic
GGATTTCCGTGATGGTAGCA+AGG 0.597602 1:-84738047 MsG0180004943.01.T01:CDS
ATGTTTCCTTGCTACCATCA+CGG 0.598108 1:+84738041 None:intergenic
CTGATGGGGTTGTAGAGGAG+AGG 0.618513 1:-84736961 MsG0180004943.01.T01:CDS
GATGATTCTCTACGGTAAGG+AGG 0.619408 1:-84736665 MsG0180004943.01.T01:exon
GGATCCTCTATTGAGTCATG+AGG 0.625281 1:-84736560 MsG0180004943.01.T01:three_prime_UTR
GCTTGCACAACATGAACGAA+AGG 0.627660 1:+84737010 None:intergenic
AAATCTTGGGAAAAGTTCAA+CGG 0.631024 1:-84736309 MsG0180004943.01.T01:three_prime_UTR
GCTGCATTGGATGGACAACA+AGG 0.632379 1:+84734947 None:intergenic
ACAAATATATTCTAAACTCG+AGG 0.642259 1:-84735175 MsG0180004943.01.T01:intron
ACAAGGAAACCTGGTGCCGT+AGG 0.644652 1:+84734964 None:intergenic
TATCTGCAAAGTCAGACCTA+CGG 0.665912 1:-84734980 MsG0180004943.01.T01:three_prime_UTR
TTACCGTAGAGAATCATCCA+AGG 0.668828 1:+84736670 None:intergenic
CCACTATACAGAATCTGATG+GGG 0.698617 1:-84736975 MsG0180004943.01.T01:CDS
AGTAGGACCTTGATACAGAG+TGG 0.719964 1:+84736872 None:intergenic
TATGGAACATCCAAGAACAG+CGG 0.741786 1:-84737091 MsG0180004943.01.T01:CDS
GTTTGCAGTCAGGAATACTG+AGG 0.743649 1:-84735612 MsG0180004943.01.T01:three_prime_UTR
TGAGAATCAACATAGTCACG+AGG 0.752374 1:+84736714 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATCTAAATAAAGTTATT+GGG - Chr1:84736047-84736066 MsG0180004943.01.T01:intron 10.0%
!! ATTATTAGATGAAATTTATA+TGG - Chr1:84737488-84737507 MsG0180004943.01.T01:intron 10.0%
!! TTATTAGATGAAATTTATAT+GGG - Chr1:84737489-84737508 MsG0180004943.01.T01:intron 10.0%
!!! AAAATATTGTGTTTTAAAAA+AGG - Chr1:84736285-84736304 MsG0180004943.01.T01:three_prime_UTR 10.0%
!!! TCTTTATTTTATAATGAAAT+GGG + Chr1:84736724-84736743 None:intergenic 10.0%
!! AAAAAAATTAAAGAGATTTG+GGG - Chr1:84735945-84735964 MsG0180004943.01.T01:intron 15.0%
!! AGAAAAAAATTAAAGAGATT+TGG - Chr1:84735943-84735962 MsG0180004943.01.T01:intron 15.0%
!! ATATTTCAATTATAATTTCG+TGG - Chr1:84736775-84736794 MsG0180004943.01.T01:intron 15.0%
!! CATAATCTAAATAAAGTTAT+TGG - Chr1:84736046-84736065 MsG0180004943.01.T01:intron 15.0%
!! GAAAAAAATTAAAGAGATTT+GGG - Chr1:84735944-84735963 MsG0180004943.01.T01:intron 15.0%
!! TATAAATATAGGCTAAAATA+TGG - Chr1:84736091-84736110 MsG0180004943.01.T01:intron 15.0%
!! TATTTCTCTAATAACAATTT+AGG - Chr1:84737847-84737866 MsG0180004943.01.T01:intron 15.0%
!!! AAAAACAACAAATTTTTTAC+AGG - Chr1:84736381-84736400 MsG0180004943.01.T01:intron 15.0%
!!! AAAACAACAAATTTTTTACA+GGG - Chr1:84736382-84736401 MsG0180004943.01.T01:intron 15.0%
!!! AATCATTCACTTTTTTTTTT+GGG - Chr1:84734437-84734456 MsG0180004943.01.T01:intron 15.0%
!!! ATTAAAAGAAAAAGACATTT+TGG - Chr1:84737730-84737749 MsG0180004943.01.T01:intron 15.0%
!!! CTCTTTATTTTATAATGAAA+TGG + Chr1:84736725-84736744 None:intergenic 15.0%
!!! TGTAAAAAATTTGTTGTTTT+TGG + Chr1:84736382-84736401 None:intergenic 15.0%
!!! TTTAGAATATATTTGTGATA+TGG + Chr1:84736938-84736957 None:intergenic 15.0%
!! AAAAACTACAAAAAATTGAC+AGG + Chr1:84736154-84736173 None:intergenic 20.0%
!! AAAACTACAAAAAATTGACA+GGG + Chr1:84736153-84736172 None:intergenic 20.0%
!! ACATAAATGTAGATTAGATA+TGG - Chr1:84735008-84735027 MsG0180004943.01.T01:intron 20.0%
!! ATATCTAACATCAAAACTAT+GGG - Chr1:84735529-84735548 MsG0180004943.01.T01:intron 20.0%
!! ATATTTATGTTAGAATTGTC+TGG - Chr1:84734963-84734982 MsG0180004943.01.T01:three_prime_UTR 20.0%
!! CAAAAACAAAAAAATTTGCA+GGG + Chr1:84736312-84736331 None:intergenic 20.0%
!! TCAAAAACAAAAAAATTTGC+AGG + Chr1:84736313-84736332 None:intergenic 20.0%
!! TCTATATTTATGGCTAAATA+TGG + Chr1:84736444-84736463 None:intergenic 20.0%
!! TGCGTTTCTATTATAAATAT+AGG - Chr1:84736080-84736099 MsG0180004943.01.T01:intron 20.0%
!!! AAGTAGTAATTTTGTAAAAG+TGG + Chr1:84735633-84735652 None:intergenic 20.0%
!!! GAATCATTCACTTTTTTTTT+TGG - Chr1:84734436-84734455 MsG0180004943.01.T01:intron 20.0%
!!! GGTTTATGATATATTTTAGA+AGG - Chr1:84735896-84735915 MsG0180004943.01.T01:intron 20.0%
!!! TATCTGAATCAATTTTCTTT+CGG + Chr1:84734915-84734934 None:intergenic 20.0%
!!! TCAAAAACAAAAATTTTGCA+GGG - Chr1:84736355-84736374 MsG0180004943.01.T01:intron 20.0%
!!! TGTCAATTTTTTGTAGTTTT+TGG - Chr1:84736153-84736172 MsG0180004943.01.T01:intron 20.0%
!!! TTAAAACACAATATTTTGCA+GGG + Chr1:84736282-84736301 None:intergenic 20.0%
!!! TTCAAAAACAAAAATTTTGC+AGG - Chr1:84736354-84736373 MsG0180004943.01.T01:intron 20.0%
!!! TTTAAAACACAATATTTTGC+AGG + Chr1:84736283-84736302 None:intergenic 20.0%
!!! TTTGTTTTTGAAAATATTCC+CGG + Chr1:84736346-84736365 None:intergenic 20.0%
! AAACAACTATTATTCAACTG+AGG + Chr1:84736999-84737018 None:intergenic 25.0%
! AACACAGAAATAATCAAAAC+GGG + Chr1:84735697-84735716 None:intergenic 25.0%
! ACAAATATATTCTAAACTCG+AGG - Chr1:84736942-84736961 MsG0180004943.01.T01:CDS 25.0%
! ATGTTATATTGGAATGAAAG+CGG - Chr1:84735728-84735747 MsG0180004943.01.T01:intron 25.0%
! ATTATTAGATAAGTCATGCA+TGG + Chr1:84736621-84736640 None:intergenic 25.0%
! CACACATTGTTGATATAATA+GGG + Chr1:84737560-84737579 None:intergenic 25.0%
! CATATCTAACATCAAAACTA+TGG - Chr1:84735528-84735547 MsG0180004943.01.T01:intron 25.0%
! GAACACAGAAATAATCAAAA+CGG + Chr1:84735698-84735717 None:intergenic 25.0%
! TAGATTAAGCAGATAAGAAT+AGG + Chr1:84737107-84737126 None:intergenic 25.0%
! TATTCTTATCTGCTTAATCT+AGG - Chr1:84737106-84737125 MsG0180004943.01.T01:intron 25.0%
! TCAAAACCCACATAATTTAA+TGG + Chr1:84737517-84737536 None:intergenic 25.0%
! TGTAAGTACTTCATAGAAAT+AGG - Chr1:84734656-84734675 MsG0180004943.01.T01:intron 25.0%
! TTCTTCTAAACATAACCATT+AGG + Chr1:84737824-84737843 None:intergenic 25.0%
! TTCTTGAAGGAAAAAACTTT+AGG - Chr1:84734163-84734182 MsG0180004943.01.T01:three_prime_UTR 25.0%
! TTGATCACGATATAAAGATA+AGG + Chr1:84737917-84737936 None:intergenic 25.0%
! TTTAATTCTTGAGACAAAGT+AGG + Chr1:84735265-84735284 None:intergenic 25.0%
!! AAATAGGATAGGACATTTTA+CGG - Chr1:84734672-84734691 MsG0180004943.01.T01:intron 25.0%
!! ATCTGAATCAATTTTCTTTC+GGG + Chr1:84734914-84734933 None:intergenic 25.0%
!! CTTAAACTTTGTTCTCATTT+TGG - Chr1:84734287-84734306 MsG0180004943.01.T01:three_prime_UTR 25.0%
!! TTTAAGACAGAGAAAGTATA+AGG + Chr1:84734344-84734363 None:intergenic 25.0%
!!! AACCATTTTAAAACTGTTGT+CGG - Chr1:84737360-84737379 MsG0180004943.01.T01:intron 25.0%
!!! ACAACAGTTTTAAAATGGTT+GGG + Chr1:84737360-84737379 None:intergenic 25.0%
!!! AGCGGTTTTTTTTTTTTTTC+AGG - Chr1:84735746-84735765 MsG0180004943.01.T01:intron 25.0%
!!! ATGTTTTTAGTCATTCAGTA+AGG + Chr1:84735773-84735792 None:intergenic 25.0%
!!! CATAGTTTTGATGTTAGATA+TGG + Chr1:84735530-84735549 None:intergenic 25.0%
!!! TGTTTTATTTTGTCATTGCA+TGG - Chr1:84737014-84737033 MsG0180004943.01.T01:CDS 25.0%
!!! TTTCTGTTGAAGCATTTTAT+TGG - Chr1:84734836-84734855 MsG0180004943.01.T01:intron 25.0%
!!! TTTGATTATTTCTGTGTTCA+CGG - Chr1:84735699-84735718 MsG0180004943.01.T01:intron 25.0%
AAATCTTGGGAAAAGTTCAA+CGG - Chr1:84735808-84735827 MsG0180004943.01.T01:intron 30.0%
AAGTGTTATGACTCTTATGT+GGG - Chr1:84735366-84735385 MsG0180004943.01.T01:intron 30.0%
AATCCAAATGTATGCTTCTT+TGG - Chr1:84737649-84737668 MsG0180004943.01.T01:intron 30.0%
ACATCAAAACTATGGGATTA+AGG - Chr1:84735536-84735555 MsG0180004943.01.T01:intron 30.0%
AGGAGAAATAAGATGCAATT+TGG - Chr1:84735472-84735491 MsG0180004943.01.T01:intron 30.0%
AGTTAATGCAGTAAATGAGT+CGG + Chr1:84734588-84734607 None:intergenic 30.0%
ATAGTTCAAATGCAAAGTGA+AGG - Chr1:84734538-84734557 MsG0180004943.01.T01:intron 30.0%
ATATTACCCAACACAAACTA+AGG - Chr1:84735845-84735864 MsG0180004943.01.T01:intron 30.0%
ATGCAAATCATCACAAAAGT+GGG + Chr1:84736218-84736237 None:intergenic 30.0%
ATGGGATCCATTAAATTATG+TGG - Chr1:84737507-84737526 MsG0180004943.01.T01:intron 30.0%
ATTCAGTGCCAAAATAAAAG+AGG + Chr1:84737390-84737409 None:intergenic 30.0%
CACGGAAAACTATGTTATAT+TGG - Chr1:84735717-84735736 MsG0180004943.01.T01:intron 30.0%
CTACGATCAATGAAATTATG+TGG + Chr1:84737205-84737224 None:intergenic 30.0%
GATATAAAGATAAGGCCATA+CGG + Chr1:84737909-84737928 None:intergenic 30.0%
GCACACATTGTTGATATAAT+AGG + Chr1:84737561-84737580 None:intergenic 30.0%
GGAGAAATAAGATGCAATTT+GGG - Chr1:84735473-84735492 MsG0180004943.01.T01:intron 30.0%
GTACTTCATAGAAATAGGAT+AGG - Chr1:84734661-84734680 MsG0180004943.01.T01:intron 30.0%
TAATGAAATGGGAGAATAAG+AGG + Chr1:84736713-84736732 None:intergenic 30.0%
TAGAAGGAAATCATAAGATG+TGG - Chr1:84735912-84735931 MsG0180004943.01.T01:intron 30.0%
TATGCAAATCATCACAAAAG+TGG + Chr1:84736219-84736238 None:intergenic 30.0%
TATTGCAATTAAACCTGTGT+AGG - Chr1:84734933-84734952 MsG0180004943.01.T01:intron 30.0%
TCAAATGTACAGAAAACACT+TGG + Chr1:84734864-84734883 None:intergenic 30.0%
TCTACAATCAGAAAGAAAGA+AGG - Chr1:84734365-84734384 MsG0180004943.01.T01:intron 30.0%
TCTATGTAGAAAGCAATTTG+AGG + Chr1:84737250-84737269 None:intergenic 30.0%
TCTGCTTAATCTAGGAATAA+AGG - Chr1:84737114-84737133 MsG0180004943.01.T01:intron 30.0%
TGGGATCCATTAAATTATGT+GGG - Chr1:84737508-84737527 MsG0180004943.01.T01:intron 30.0%
TTGACAAAAACATTAAGCAG+AGG + Chr1:84737431-84737450 None:intergenic 30.0%
TTGTGTTGGGTAATATATCA+AGG + Chr1:84735841-84735860 None:intergenic 30.0%
! AAAGTGTTATGACTCTTATG+TGG - Chr1:84735365-84735384 MsG0180004943.01.T01:intron 30.0%
! ACTTTTCCCAAGATTTGATT+TGG + Chr1:84735804-84735823 None:intergenic 30.0%
! CAACTTCAATACTGACTAAT+GGG + Chr1:84734488-84734507 None:intergenic 30.0%
! TAACCAAAGAAGCATACATT+TGG + Chr1:84737655-84737674 None:intergenic 30.0%
! TCATGAGTAGATTTTATGAC+TGG + Chr1:84735313-84735332 None:intergenic 30.0%
! TGAACCCAATTTTGTAGTTT+TGG - Chr1:84736255-84736274 MsG0180004943.01.T01:intron 30.0%
! TTTTGTCTTCTTTCCAGAAT+GGG - Chr1:84736482-84736501 MsG0180004943.01.T01:intron 30.0%
! TTTTTGTCTTCTTTCCAGAA+TGG - Chr1:84736481-84736500 MsG0180004943.01.T01:intron 30.0%
!! TGCTTAATGTTTTTGTCAAG+AGG - Chr1:84737432-84737451 MsG0180004943.01.T01:intron 30.0%
!! TGTTTTTGAAAATAGTCCTC+CGG - Chr1:84736324-84736343 MsG0180004943.01.T01:three_prime_UTR 30.0%
!!! ACCATTTTAAAACTGTTGTC+GGG - Chr1:84737361-84737380 MsG0180004943.01.T01:intron 30.0%
!!! CAACAGTTTTAAAATGGTTG+GGG + Chr1:84737359-84737378 None:intergenic 30.0%
!!! GACAACAGTTTTAAAATGGT+TGG + Chr1:84737361-84737380 None:intergenic 30.0%
!!! TCTTTTATTTTGGCACTGAA+TGG - Chr1:84737389-84737408 MsG0180004943.01.T01:intron 30.0%
AAACCTTGGATGATTCTCTA+CGG - Chr1:84735444-84735463 MsG0180004943.01.T01:intron 35.0%
AAATATGTTTGCACCTACAC+AGG + Chr1:84734949-84734968 None:intergenic 35.0%
AAGCAATTTGAGGATGATGA+TGG + Chr1:84737240-84737259 None:intergenic 35.0%
ACAACATGAACGAAAGGAAA+AGG + Chr1:84735104-84735123 None:intergenic 35.0%
ACCACTATACAGAATCTGAT+GGG - Chr1:84735141-84735160 MsG0180004943.01.T01:intron 35.0%
ACCATAGTAAAGTTGCAGAT+TGG + Chr1:84734797-84734816 None:intergenic 35.0%
AGGGACCAAAACTACAAAAT+TGG + Chr1:84736263-84736282 None:intergenic 35.0%
AGTGATGAAATTGTGCAATG+CGG - Chr1:84737269-84737288 MsG0180004943.01.T01:intron 35.0%
CAAGCACCAAATCAAATCTT+GGG - Chr1:84735795-84735814 MsG0180004943.01.T01:intron 35.0%
CTTCAACAGAAAGAAACAAG+AGG + Chr1:84734828-84734847 None:intergenic 35.0%
GAAGCTCAAATACTCTGTAT+CGG - Chr1:84734101-84734120 MsG0180004943.01.T01:three_prime_UTR 35.0%
GGGACCAAAACTACAAAATT+GGG + Chr1:84736262-84736281 None:intergenic 35.0%
GTAGGAGAAGAAATGCTAAA+GGG - Chr1:84737792-84737811 MsG0180004943.01.T01:intron 35.0%
TACCACTATACAGAATCTGA+TGG - Chr1:84735140-84735159 MsG0180004943.01.T01:intron 35.0%
TCAAGCACCAAATCAAATCT+TGG - Chr1:84735794-84735813 MsG0180004943.01.T01:intron 35.0%
TGCAAGCAAGTAAACATATG+TGG + Chr1:84736647-84736666 None:intergenic 35.0%
TTAACTAGTTGCTTCATACG+CGG - Chr1:84734602-84734621 MsG0180004943.01.T01:intron 35.0%
TTAGTGGCTGTACAAAATGA+TGG - Chr1:84734763-84734782 MsG0180004943.01.T01:intron 35.0%
TTTGTCTTCTTTCCAGAATG+GGG - Chr1:84736483-84736502 MsG0180004943.01.T01:intron 35.0%
! GCAACTTCAATACTGACTAA+TGG + Chr1:84734489-84734508 None:intergenic 35.0%
! TTTAAAATGGTTGGGGTGAT+GGG + Chr1:84737352-84737371 None:intergenic 35.0%
!! ACAAGACTTTGAGTTGTTAC+TGG + Chr1:84736549-84736568 None:intergenic 35.0%
!! AGAAAAAGACATTTTGGTGC+AGG - Chr1:84737736-84737755 MsG0180004943.01.T01:intron 35.0%
!! AGTTTCTCCTTAGTTTGTGT+TGG + Chr1:84735855-84735874 None:intergenic 35.0%
!! AGTTTTATGTCTCTGTCTCA+TGG - Chr1:84734310-84734329 MsG0180004943.01.T01:three_prime_UTR 35.0%
!! CAACTCAAAGTCTTGTTAGA+AGG - Chr1:84736553-84736572 MsG0180004943.01.T01:three_prime_UTR 35.0%
!! GTTTCTCCTTAGTTTGTGTT+GGG + Chr1:84735854-84735873 None:intergenic 35.0%
!! GTTTTTGAAAATAGTCCTCC+GGG - Chr1:84736325-84736344 MsG0180004943.01.T01:three_prime_UTR 35.0%
!! GTTTTTGAAAATATTCCCGG+AGG + Chr1:84736343-84736362 None:intergenic 35.0%
!! TTGCTGTAATTTTCAAGCAG+TGG - Chr1:84736014-84736033 MsG0180004943.01.T01:intron 35.0%
!!! ACCCGACAACAGTTTTAAAA+TGG + Chr1:84737365-84737384 None:intergenic 35.0%
!!! ATGAGGTTGCTTTTAAGGAA+TGG - Chr1:84735574-84735593 MsG0180004943.01.T01:three_prime_UTR 35.0%
!!! CATTTTACGGACACTTTTTC+AGG - Chr1:84734685-84734704 MsG0180004943.01.T01:intron 35.0%
!!! TTCGGGACTATTTTGATGTT+TGG + Chr1:84734897-84734916 None:intergenic 35.0%
!!! TTTTAAAATGGTTGGGGTGA+TGG + Chr1:84737353-84737372 None:intergenic 35.0%
ACAGGGACTAAAACCAAACA+AGG + Chr1:84736136-84736155 None:intergenic 40.0%
ACCAAAACGAGCATATTTGC+AGG - Chr1:84736411-84736430 MsG0180004943.01.T01:intron 40.0%
ACCAAACAAGGCATATTTGC+AGG + Chr1:84736124-84736143 None:intergenic 40.0%
AGATATGGACAGGCTTCTAA+GGG + Chr1:84737327-84737346 None:intergenic 40.0%
AGATCTCAACAGACAAAGTG+AGG - Chr1:84734138-84734157 MsG0180004943.01.T01:three_prime_UTR 40.0%
ATCTCAACAGACAAAGTGAG+GGG - Chr1:84734140-84734159 MsG0180004943.01.T01:three_prime_UTR 40.0%
ATGACTCTTATGTGGGTTCT+TGG - Chr1:84735373-84735392 MsG0180004943.01.T01:intron 40.0%
ATGTTTCCTTGCTACCATCA+CGG + Chr1:84734079-84734098 None:intergenic 40.0%
ATTTGCACCACTCTGTATCA+AGG - Chr1:84735238-84735257 MsG0180004943.01.T01:intron 40.0%
CAACTGAGGAATACTAGTAG+AGG + Chr1:84736985-84737004 None:intergenic 40.0%
CCAAAACGAGCATATTTGCA+GGG - Chr1:84736412-84736431 MsG0180004943.01.T01:intron 40.0%
CCACTATACAGAATCTGATG+GGG - Chr1:84735142-84735161 MsG0180004943.01.T01:intron 40.0%
GAACAGAGACATGTAGTGTT+AGG + Chr1:84737596-84737615 None:intergenic 40.0%
GATCTCAACAGACAAAGTGA+GGG - Chr1:84734139-84734158 MsG0180004943.01.T01:three_prime_UTR 40.0%
GCCAATCTGCAACTTTACTA+TGG - Chr1:84734793-84734812 MsG0180004943.01.T01:intron 40.0%
GCTAACGCACTAAAAAACCT+TGG - Chr1:84735430-84735449 MsG0180004943.01.T01:intron 40.0%
GGAGCTATTCACTAGGAATA+TGG + Chr1:84735292-84735311 None:intergenic 40.0%
GGTAGGAGAAGAAATGCTAA+AGG - Chr1:84737791-84737810 MsG0180004943.01.T01:intron 40.0%
TAGATATGGACAGGCTTCTA+AGG + Chr1:84737328-84737347 None:intergenic 40.0%
TATCTGCAAAGTCAGACCTA+CGG - Chr1:84737137-84737156 MsG0180004943.01.T01:intron 40.0%
TATGACTGGAGCTATTCACT+AGG + Chr1:84735299-84735318 None:intergenic 40.0%
TATGGAACATCCAAGAACAG+CGG - Chr1:84735026-84735045 MsG0180004943.01.T01:intron 40.0%
TCATCACAAAAGTGGGATCA+AGG + Chr1:84736211-84736230 None:intergenic 40.0%
TGAAATGGGAGAATAAGAGG+TGG + Chr1:84736710-84736729 None:intergenic 40.0%
TGAGAATCAACATAGTCACG+AGG + Chr1:84735406-84735425 None:intergenic 40.0%
TGATACAGAGTGGTGCAAAT+TGG + Chr1:84735238-84735257 None:intergenic 40.0%
TGCCTGAAGATCTTCAATCT+GGG + Chr1:84735204-84735223 None:intergenic 40.0%
TTACATTACGATGCTGAGGT+AGG - Chr1:84737774-84737793 MsG0180004943.01.T01:intron 40.0%
TTACCGTAGAGAATCATCCA+AGG + Chr1:84735450-84735469 None:intergenic 40.0%
TTCTCGAGCAGATCATTTAG+TGG - Chr1:84734747-84734766 MsG0180004943.01.T01:intron 40.0%
TTGCATGCATTATCGCATAG+TGG - Chr1:84737707-84737726 MsG0180004943.01.T01:intron 40.0%
TTGGATGATTCTCTACGGTA+AGG - Chr1:84735449-84735468 MsG0180004943.01.T01:intron 40.0%
! AAGATAAGGCCATACGGTTT+TGG + Chr1:84737903-84737922 None:intergenic 40.0%
! AAGATGCAATTTGGGTTCTG+AGG - Chr1:84735481-84735500 MsG0180004943.01.T01:intron 40.0%
! AGATAAGGCCATACGGTTTT+GGG + Chr1:84737902-84737921 None:intergenic 40.0%
! GCTTTTACATTACGATGCTG+AGG - Chr1:84737770-84737789 MsG0180004943.01.T01:intron 40.0%
! TCCTGCAAATATGCCTTGTT+TGG - Chr1:84736120-84736139 MsG0180004943.01.T01:intron 40.0%
!! TCGGGTTGCCTCTTTTATTT+TGG - Chr1:84737379-84737398 MsG0180004943.01.T01:intron 40.0%
!!! GAGTCATGAGGTTGCTTTTA+AGG - Chr1:84735569-84735588 MsG0180004943.01.T01:three_prime_UTR 40.0%
!!! TGGGTTTTGACTCGTTTTGT+GGG - Chr1:84737527-84737546 MsG0180004943.01.T01:intron 40.0%
ACAAAGTGAGGGGTTCTTGA+AGG - Chr1:84734150-84734169 MsG0180004943.01.T01:three_prime_UTR 45.0%
ACGCGGCTCATTTATTGCAT+TGG - Chr1:84734619-84734638 MsG0180004943.01.T01:intron 45.0%
ACTAGATGTGAGTCAACTGC+TGG - Chr1:84735875-84735894 MsG0180004943.01.T01:intron 45.0%
AGAATCTGATGGGGTTGTAG+AGG - Chr1:84735151-84735170 MsG0180004943.01.T01:intron 45.0%
AGTAGGACCTTGATACAGAG+TGG + Chr1:84735248-84735267 None:intergenic 45.0%
CCCCATCAGATTCTGTATAG+TGG + Chr1:84735145-84735164 None:intergenic 45.0%
GATATGGACAGGCTTCTAAG+GGG + Chr1:84737326-84737345 None:intergenic 45.0%
GATGATTCTCTACGGTAAGG+AGG - Chr1:84735452-84735471 MsG0180004943.01.T01:intron 45.0%
GCAACCTCATGACTCAATAG+AGG + Chr1:84735564-84735583 None:intergenic 45.0%
GCTTGCACAACATGAACGAA+AGG + Chr1:84735110-84735129 None:intergenic 45.0%
GGATCCTCTATTGAGTCATG+AGG - Chr1:84735557-84735576 MsG0180004943.01.T01:intron 45.0%
GTGCCTGAAGATCTTCAATC+TGG + Chr1:84735205-84735224 None:intergenic 45.0%
GTTTGCAGTCAGGAATACTG+AGG - Chr1:84736505-84736524 MsG0180004943.01.T01:intron 45.0%
TCACTTGACACATGAGATGC+AGG - Chr1:84736894-84736913 MsG0180004943.01.T01:CDS 45.0%
TCTTATGTGGGTTCTTGGTC+AGG - Chr1:84735378-84735397 MsG0180004943.01.T01:intron 45.0%
! AGGAGCATATGGCTCTTTGA+GGG - Chr1:84735501-84735520 MsG0180004943.01.T01:intron 45.0%
! ATATGGACAGGCTTCTAAGG+GGG + Chr1:84737325-84737344 None:intergenic 45.0%
! CCCTGCAAATATGCTCGTTT+TGG + Chr1:84736415-84736434 None:intergenic 45.0%
! GATAAGGCCATACGGTTTTG+GGG + Chr1:84737901-84737920 None:intergenic 45.0%
! GCGAACCAGGATTTCTAAGA+TGG - Chr1:84735178-84735197 MsG0180004943.01.T01:three_prime_UTR 45.0%
! GTGATGGGATAGATATGGAC+AGG + Chr1:84737337-84737356 None:intergenic 45.0%
!! CAGGAATACTGAGGCACTTT+TGG - Chr1:84736514-84736533 MsG0180004943.01.T01:intron 45.0%
!! TTGGGGTGATGGGATAGATA+TGG + Chr1:84737342-84737361 None:intergenic 45.0%
!! TTTGGGTTCTGAGGAGCATA+TGG - Chr1:84735490-84735509 MsG0180004943.01.T01:intron 45.0%
!!! GGGTTTTGACTCGTTTTGTG+GGG - Chr1:84737528-84737547 MsG0180004943.01.T01:intron 45.0%
!!! GTGGGTTTTGACTCGTTTTG+TGG - Chr1:84737526-84737545 MsG0180004943.01.T01:intron 45.0%
!! TTAAAATATATCTATATTTA+TGG + Chr1:84736454-84736473 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTAATCT+TGG - Chr1:84736684-84736703 MsG0180004943.01.T01:CDS 5.0%
AGCACTTCTACCGCTGTTCT+TGG + Chr1:84735039-84735058 None:intergenic 50.0%
CTGGGCCATCTTAGAAATCC+TGG + Chr1:84735186-84735205 None:intergenic 50.0%
GCTAAAGGGTCGAAGCCTAA+TGG - Chr1:84737806-84737825 MsG0180004943.01.T01:intron 50.0%
GCTGCATTGGATGGACAACA+AGG + Chr1:84737173-84737192 None:intergenic 50.0%
GGAGCATATGGCTCTTTGAG+GGG - Chr1:84735502-84735521 MsG0180004943.01.T01:intron 50.0%
GGATGGACAACAAGGAAACC+TGG + Chr1:84737165-84737184 None:intergenic 50.0%
GGATTTCCGTGATGGTAGCA+AGG - Chr1:84734070-84734089 MsG0180004943.01.T01:three_prime_UTR 50.0%
GGCCCAGATTGAAGATCTTC+AGG - Chr1:84735199-84735218 MsG0180004943.01.T01:three_prime_UTR 50.0%
TGCTTGCTCGGGAGAAAACA+TGG - Chr1:84735055-84735074 MsG0180004943.01.T01:intron 50.0%
TGGGGTCACGGCAAAATTGA+CGG + Chr1:84737883-84737902 None:intergenic 50.0%
TGTTGTCCATCCAATGCAGC+AGG - Chr1:84737173-84737192 MsG0180004943.01.T01:intron 50.0%
! GAGCATATGGCTCTTTGAGG+GGG - Chr1:84735503-84735522 MsG0180004943.01.T01:intron 50.0%
! GAGGAGCATATGGCTCTTTG+AGG - Chr1:84735500-84735519 MsG0180004943.01.T01:intron 50.0%
! TATGGACAGGCTTCTAAGGG+GGG + Chr1:84737324-84737343 None:intergenic 50.0%
!! AGACATTTTGGTGCAGGCTC+TGG - Chr1:84737742-84737761 MsG0180004943.01.T01:intron 50.0%
AAAGTCAGACCTACGGCACC+AGG - Chr1:84737144-84737163 MsG0180004943.01.T01:intron 55.0%
AGCTCACCTGCTGCATTGGA+TGG + Chr1:84737182-84737201 None:intergenic 55.0%
CCAGAATGGGGTTTGCAGTC+AGG - Chr1:84736495-84736514 MsG0180004943.01.T01:intron 55.0%
CCTGACTGCAAACCCCATTC+TGG + Chr1:84736498-84736517 None:intergenic 55.0%
CTGATGGGGTTGTAGAGGAG+AGG - Chr1:84735156-84735175 MsG0180004943.01.T01:intron 55.0%
TTGTAGAGGAGAGGCGAACC+AGG - Chr1:84735165-84735184 MsG0180004943.01.T01:intron 55.0%
!! ACAAGGAAACCTGGTGCCGT+AGG + Chr1:84737156-84737175 None:intergenic 55.0%
!! AGCGGTAGAAGTGCTTGCTC+GGG - Chr1:84735044-84735063 MsG0180004943.01.T01:intron 55.0%
!! CAGCGGTAGAAGTGCTTGCT+CGG - Chr1:84735043-84735062 MsG0180004943.01.T01:intron 55.0%
!!! GCCATACGGTTTTGGGGTCA+CGG + Chr1:84737895-84737914 None:intergenic 55.0%
GCCGTGACCCCAAAACCGTA+TGG - Chr1:84737891-84737910 MsG0180004943.01.T01:intron 60.0%
GTGGAGCTCACCTGCTGCAT+TGG + Chr1:84737186-84737205 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 84734068 84738071 84734068 ID=MsG0180004943.01;Name=MsG0180004943.01
Chr1 mRNA 84734068 84738071 84734068 ID=MsG0180004943.01.T01;Parent=MsG0180004943.01;Name=MsG0180004943.01.T01;_AED=0.49;_eAED=0.64;_QI=0|0.6|0.54|1|0.4|0.36|11|753|127
Chr1 exon 84734945 84735011 84734945 ID=MsG0180004943.01.T01:exon:9435;Parent=MsG0180004943.01.T01
Chr1 exon 84735176 84735223 84735176 ID=MsG0180004943.01.T01:exon:9434;Parent=MsG0180004943.01.T01
Chr1 exon 84735565 84735640 84735565 ID=MsG0180004943.01.T01:exon:9433;Parent=MsG0180004943.01.T01
Chr1 exon 84736258 84736371 84736258 ID=MsG0180004943.01.T01:exon:9432;Parent=MsG0180004943.01.T01
Chr1 exon 84736549 84736739 84736549 ID=MsG0180004943.01.T01:exon:9431;Parent=MsG0180004943.01.T01
Chr1 exon 84736880 84737119 84736880 ID=MsG0180004943.01.T01:exon:9430;Parent=MsG0180004943.01.T01
Chr1 exon 84737985 84738071 84737985 ID=MsG0180004943.01.T01:exon:9429;Parent=MsG0180004943.01.T01
Chr1 CDS 84737985 84738071 84737985 ID=MsG0180004943.01.T01:cds;Parent=MsG0180004943.01.T01
Chr1 CDS 84736880 84737119 84736880 ID=MsG0180004943.01.T01:cds;Parent=MsG0180004943.01.T01
Chr1 CDS 84736683 84736739 84736683 ID=MsG0180004943.01.T01:cds;Parent=MsG0180004943.01.T01
Chr1 three_prime_UTR 84736549 84736682 84736549 ID=MsG0180004943.01.T01:three_prime_utr;Parent=MsG0180004943.01.T01
Chr1 three_prime_UTR 84736258 84736371 84736258 ID=MsG0180004943.01.T01:three_prime_utr;Parent=MsG0180004943.01.T01
Chr1 three_prime_UTR 84735565 84735640 84735565 ID=MsG0180004943.01.T01:three_prime_utr;Parent=MsG0180004943.01.T01
Chr1 three_prime_UTR 84735176 84735223 84735176 ID=MsG0180004943.01.T01:three_prime_utr;Parent=MsG0180004943.01.T01
Chr1 three_prime_UTR 84734945 84735011 84734945 ID=MsG0180004943.01.T01:three_prime_utr;Parent=MsG0180004943.01.T01
Chr1 three_prime_UTR 84734068 84734381 84734068 ID=MsG0180004943.01.T01:three_prime_utr;Parent=MsG0180004943.01.T01
Chr1 mRNA 84734068 84735241 84734068 ID=MsG0180004943.01.T02;Parent=MsG0180004943.01;Name=MsG0180004943.01.T02;_AED=0.50;_eAED=0.54;_QI=0|0.5|0.33|1|0|0|3|214|86
Chr1 exon 84734945 84735035 84734945 ID=MsG0180004943.01.T02:exon:9438;Parent=MsG0180004943.01.T02
Chr1 exon 84735172 84735241 84735172 ID=MsG0180004943.01.T02:exon:9437;Parent=MsG0180004943.01.T02
Chr1 CDS 84735172 84735241 84735172 ID=MsG0180004943.01.T02:cds;Parent=MsG0180004943.01.T02
Chr1 CDS 84734945 84735035 84734945 ID=MsG0180004943.01.T02:cds;Parent=MsG0180004943.01.T02
Chr1 CDS 84734282 84734381 84734282 ID=MsG0180004943.01.T02:cds;Parent=MsG0180004943.01.T02
Chr1 three_prime_UTR 84734068 84734281 84734068 ID=MsG0180004943.01.T02:three_prime_utr;Parent=MsG0180004943.01.T02
Gene Sequence

>MsG0180004943.01.T02

TTGACACATGAGATGCAGGCTAGAAGACTGAAAGACGCCATATCACAAATATATTCTAAACTCGAGGTATCCTATTCTTATCTGCTTAATCTAGGAATAAAGGTATCTGCAAAGTCAGACCTACGGCACCAGGTTTCCTTGTTGTCCATCCAATGCAGCAGGCTCTGGATGCTGCTTTTACATTACGATGCTGAGGTAGGAGAAGAAATGCTAAAGGGTCGAAGCCTAATGGTTATGTTTAGAAGAATGATATTTCTCTAA

>MsG0180004943.01.T01

ATGGATTTCCGTGATGGTAGCAAGGAAACATCTGAAGCTCAAATACTCTGTATCGGCGAACGTTGTTGCAAGATCTCAACAGACAAAATTAGATATGGAACATCCAAGAACAGCGGTAGAAGTGCTTGCTCGGGAGAAAACATGGTTAGTGAAACTATTATTTCTTGTCCTTTTCCTTTCGTTCATGTTGTGCAAGCTCTTAATTTGTACCACTATACAGAATCTGATGGGGTTGTAGAGGAGAGGCGAACCAGGATTTCTAAGATGGCCCAGATTGAAGATCTTCAGGCACAAGAGATCATCCAATTTGCACCACTCTGTATCAAGGATCCTCGTGACTATGTTGATTCTCAACAAGCTAACGCACTAAAAAACCTTGGATGA

Protein sequence

>MsG0180004943.01.T02

LTHEMQARRLKDAISQIYSKLEVSYSYLLNLGIKVSAKSDLRHQVSLLSIQCSRLWMLLLHYDAEVGEEMLKGRSLMVMFRRMIFL*

>MsG0180004943.01.T01

MDFRDGSKETSEAQILCIGERCCKISTDKIRYGTSKNSGRSACSGENMVSETIISCPFPFVHVVQALNLYHYTESDGVVEERRTRISKMAQIEDLQAQEIIQFAPLCIKDPRDYVDSQQANALKNLG*