AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011035.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011035.01.T01 MTR_4g087885 90.104 192 14 1 1 192 89 275 1.64e-125 355
MsG0280011035.01.T01 MTR_2g097220 79.688 192 2 1 1 192 83 237 1.02e-103 298
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011035.01.T01 AT1G20575 71.875 192 17 1 1 192 92 246 1.82e-95 278

Find 69 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAATTGCAACAGGTTTA+TGG 0.172632 2:-78699204 MsG0280011035.01.T01:five_prime_UTR
AACGAGTTGCTCACTGTTTC+CGG 0.175480 2:+78699746 None:intergenic
TCGTTCTTTGTAGACTTTAT+AGG 0.189170 2:-78698031 MsG0280011035.01.T01:intron
ATGAAGCCTGGCAAATATTT+TGG 0.190219 2:+78698381 None:intergenic
GAAGATATACCAGGCCTTTC+AGG 0.213828 2:+78697096 None:intergenic
ACGGAAGGTGTTTGAAAATA+AGG 0.231492 2:+78699513 None:intergenic
CATAATGACAACAAAATTTC+CGG 0.304728 2:+78698615 None:intergenic
ACATTTGTCGATAGAGTATA+TGG 0.335361 2:-78697155 MsG0280011035.01.T01:CDS
AATATTTGCCAGGCTTCATT+AGG 0.338833 2:-78698377 MsG0280011035.01.T01:intron
GAAACCGCACCTCTTTGATA+TGG 0.360703 2:+78697916 None:intergenic
ACTGGTGCTGATATAGTTAC+AGG 0.361148 2:-78698264 MsG0280011035.01.T01:CDS
ACAGGGACTCGGTATGTTAA+AGG 0.371437 2:-78698246 MsG0280011035.01.T01:CDS
TTCAGAAAGCAGTTGGAAAC+TGG 0.371824 2:-78698282 MsG0280011035.01.T01:intron
ATGCTTCATGCCATGAATAT+AGG 0.378458 2:+78698642 None:intergenic
GTAGGTACGGCCTATATTCA+TGG 0.398632 2:-78698652 MsG0280011035.01.T01:intron
CCTTAGTTTCATATGTCTAC+AGG 0.418416 2:-78697186 MsG0280011035.01.T01:CDS
ACAGAGTGATAAGCTTGAAC+AGG 0.423909 2:+78697231 None:intergenic
TATATGGAAGTTCAAAGCTT+GGG 0.426124 2:-78697139 MsG0280011035.01.T01:CDS
TAAAGGATATGTCTTTCAAA+TGG 0.429662 2:-78697970 MsG0280011035.01.T01:CDS
TGTTGTAAAACAATTGCAAC+AGG 0.432571 2:-78699211 MsG0280011035.01.T01:five_prime_UTR
AACTCGCCGGAGTTAGTTAT+CGG 0.450823 2:-78699772 MsG0280011035.01.T01:five_prime_UTR
GAAGTTATTCTTGTGGATGA+TGG 0.459224 2:-78699255 MsG0280011035.01.T01:five_prime_UTR
CTGCAGCCAAAATATTTGCC+AGG 0.467710 2:-78698387 MsG0280011035.01.T01:intron
CCCGGTGTCTCAGATTTGAC+AGG 0.469407 2:-78698144 MsG0280011035.01.T01:CDS
TTGAGTCGTTCATTATATGT+AGG 0.474173 2:+78699554 None:intergenic
CCTGTAGACATATGAAACTA+AGG 0.476073 2:+78697186 None:intergenic
CCCTGTCAAATCTGAGACAC+CGG 0.478872 2:+78698143 None:intergenic
ATAGTACGAGCATCCAGAAA+AGG 0.481126 2:-78697942 MsG0280011035.01.T01:CDS
ATTAGTTGCTGTGTTAGTAA+AGG 0.488144 2:-78697987 MsG0280011035.01.T01:CDS
ACTCTATCGACAAATGTGAT+TGG 0.489293 2:+78697161 None:intergenic
TAATGCGCAAACTAACAAGT+AGG 0.495530 2:-78698200 MsG0280011035.01.T01:CDS
CATGGCATGAAGCATGCGTC+CGG 0.503198 2:-78698634 MsG0280011035.01.T01:exon
AAGAGCAAGACCTAGGAAGA+TGG 0.504382 2:-78698747 MsG0280011035.01.T01:five_prime_UTR
GTTAAAGGCGGTGGTGTACA+TGG 0.509663 2:-78698231 MsG0280011035.01.T01:CDS
ACAACATCTTGAGTACCATC+AGG 0.509872 2:+78699228 None:intergenic
GTATATGGAAGTTCAAAGCT+TGG 0.516811 2:-78697140 MsG0280011035.01.T01:CDS
AAGACCTAGGAAGATGGGTT+AGG 0.518310 2:-78698741 MsG0280011035.01.T01:intron
AAGTTATTCTTGTGGATGAT+GGG 0.523650 2:-78699254 MsG0280011035.01.T01:five_prime_UTR
AATGCGCAAACTAACAAGTA+GGG 0.525198 2:-78698199 MsG0280011035.01.T01:CDS
TGAAAATAAGGTAAAGAATG+AGG 0.525542 2:+78699525 None:intergenic
CTGATATAGTTACAGGGACT+CGG 0.525975 2:-78698257 MsG0280011035.01.T01:CDS
ATATGAAACTAAGGTAAGCT+AGG 0.529430 2:+78697195 None:intergenic
TTTCCTTACCTAATGAAGCC+TGG 0.533463 2:+78698369 None:intergenic
CACACCTAACCCATCTTCCT+AGG 0.541050 2:+78698737 None:intergenic
ACTCGGTATGTTAAAGGCGG+TGG 0.541395 2:-78698240 MsG0280011035.01.T01:CDS
TAGTACGAGCATCCAGAAAA+GGG 0.550858 2:-78697941 MsG0280011035.01.T01:CDS
AACAGGTTTATGGAGAAGAT+CGG 0.551903 2:-78699194 MsG0280011035.01.T01:five_prime_UTR
AAGGCGGTGGTGTACATGGA+TGG 0.557858 2:-78698227 MsG0280011035.01.T01:CDS
AGTTGTTAAGAGCAAGACCT+AGG 0.559010 2:-78698754 MsG0280011035.01.T01:five_prime_UTR
GTGGATGATGGGAGTCCTGA+TGG 0.560142 2:-78699243 MsG0280011035.01.T01:five_prime_UTR
AGAGCAAGACCTAGGAAGAT+GGG 0.564909 2:-78698746 MsG0280011035.01.T01:five_prime_UTR
TGTTGAATACCTGAAAGGCC+TGG 0.581214 2:-78697105 MsG0280011035.01.T01:CDS
CGGAGTTAGTTATCGGCCAC+CGG 0.585776 2:-78699765 MsG0280011035.01.T01:five_prime_UTR
ATATGGAAGTTCAAAGCTTG+GGG 0.588590 2:-78697138 MsG0280011035.01.T01:CDS
CTGGTGCTGATATAGTTACA+GGG 0.596454 2:-78698263 MsG0280011035.01.T01:CDS
TAGTCATCAGAAGATATACC+AGG 0.607775 2:+78697087 None:intergenic
TCGCGCTGAACTCAACTCGC+CGG 0.608082 2:-78699785 MsG0280011035.01.T01:five_prime_UTR
GAGATTGTTGAATACCTGAA+AGG 0.609990 2:-78697110 MsG0280011035.01.T01:CDS
CCGGTGTCTCAGATTTGACA+GGG 0.611198 2:-78698143 MsG0280011035.01.T01:CDS
CCTGTCAAATCTGAGACACC+GGG 0.626189 2:+78698144 None:intergenic
CAGAGTGATAAGCTTGAACA+GGG 0.628500 2:+78697232 None:intergenic
CGGTGGCCGATAACTAACTC+CGG 0.633953 2:+78699766 None:intergenic
ATGCGCAAACTAACAAGTAG+GGG 0.654373 2:-78698198 MsG0280011035.01.T01:CDS
GAGTTGCTCACTGTTTCCGG+TGG 0.654634 2:+78699749 None:intergenic
ATGGAAGTTCAAAGCTTGGG+GGG 0.696439 2:-78697136 MsG0280011035.01.T01:CDS
AAAAGGGTACCATATCAAAG+AGG 0.698624 2:-78697925 MsG0280011035.01.T01:CDS
GGGACTCGGTATGTTAAAGG+CGG 0.724417 2:-78698243 MsG0280011035.01.T01:CDS
TATGGAAGTTCAAAGCTTGG+GGG 0.735164 2:-78697137 MsG0280011035.01.T01:CDS
GGTACCATATCAAAGAGGTG+CGG 0.736305 2:-78697920 MsG0280011035.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATATTTTTCAATTTAA+GGG - Chr2:78698000-78698019 MsG0280011035.01.T01:CDS 10.0%
!! CGCATTAATTAAATTAAAAA+AGG + Chr2:78697229-78697248 None:intergenic 15.0%
!! TAATTAATCTTTGATAAAAC+TGG - Chr2:78698246-78698265 MsG0280011035.01.T01:CDS 15.0%
!! TATAACAAGATATGTATAAA+TGG + Chr2:78699156-78699175 None:intergenic 15.0%
!! TATTCATAAAACTTGTAAAT+TGG - Chr2:78699218-78699237 MsG0280011035.01.T01:five_prime_UTR 15.0%
!!! GATTGATATTTTTCAATTTA+AGG - Chr2:78697999-78698018 MsG0280011035.01.T01:CDS 15.0%
!!! TTACAAGTTTTATGAATAAA+AGG + Chr2:78699216-78699235 None:intergenic 15.0%
!! AAGAGTGATTAAATTTGAAA+AGG - Chr2:78698412-78698431 MsG0280011035.01.T01:intron 20.0%
!! ATGAAGATAGAAGAAAATTA+CGG + Chr2:78697449-78697468 None:intergenic 20.0%
!! GTTATTCTAAATAATACGAA+GGG + Chr2:78698145-78698164 None:intergenic 20.0%
!! TTATTCTAAATAATACGAAG+GGG + Chr2:78698144-78698163 None:intergenic 20.0%
!!! AATCCATTTTTATCTGAAAT+TGG + Chr2:78697325-78697344 None:intergenic 20.0%
!!! GATTAATTAGTAAAAGTATC+AGG + Chr2:78698235-78698254 None:intergenic 20.0%
!!! TATTATCTTTTACATTAACC+TGG - Chr2:78699062-78699081 MsG0280011035.01.T01:intron 20.0%
!!! TTGCTAAAGAAATATTTTGA+TGG - Chr2:78697964-78697983 MsG0280011035.01.T01:CDS 20.0%
! AATAACCATGTTTATTCTTG+TGG - Chr2:78698159-78698178 MsG0280011035.01.T01:CDS 25.0%
! AATGAACAGAATAACTTACA+TGG + Chr2:78698368-78698387 None:intergenic 25.0%
! AGTGGGTAATTTGAAAAAAA+TGG + Chr2:78699380-78699399 None:intergenic 25.0%
! CATAATGACAACAAAATTTC+CGG + Chr2:78698328-78698347 None:intergenic 25.0%
! GAGAAAATGACTAAATTGAT+TGG + Chr2:78697850-78697869 None:intergenic 25.0%
! GGTTATTCTAAATAATACGA+AGG + Chr2:78698146-78698165 None:intergenic 25.0%
! GTTCCAATTTCAGATAAAAA+TGG - Chr2:78697319-78697338 MsG0280011035.01.T01:intron 25.0%
! TAAAGGATATGTCTTTCAAA+TGG - Chr2:78698970-78698989 MsG0280011035.01.T01:intron 25.0%
! TAGATCCCAAAAAATAGAAT+AGG + Chr2:78698115-78698134 None:intergenic 25.0%
! TATTCTAAATAATACGAAGG+GGG + Chr2:78698143-78698162 None:intergenic 25.0%
! TGAAAATAAGGTAAAGAATG+AGG + Chr2:78697418-78697437 None:intergenic 25.0%
! TGTCAAATAATTCTGATTGA+AGG + Chr2:78697528-78697547 None:intergenic 25.0%
! TTCAATTTGGATGACTAAAA+TGG + Chr2:78697822-78697841 None:intergenic 25.0%
!! TTATTAAATAGCAGCTCTAA+AGG + Chr2:78697610-78697629 None:intergenic 25.0%
!!! ATAACGGATATTAAACAGTT+TGG - Chr2:78698840-78698859 MsG0280011035.01.T01:intron 25.0%
!!! TATTAAATAGCAGCTCTAAA+GGG + Chr2:78697609-78697628 None:intergenic 25.0%
!!! TGATTTTGAAGTTATTCTTG+TGG - Chr2:78697678-78697697 MsG0280011035.01.T01:intron 25.0%
!!! TTGATTGGCATTTTTCAATT+TGG + Chr2:78697835-78697854 None:intergenic 25.0%
!!! TTTTTTTCAAATTACCCACT+TGG - Chr2:78699380-78699399 MsG0280011035.01.T01:intron 25.0%
AAACAATTGCAACAGGTTTA+TGG - Chr2:78697736-78697755 MsG0280011035.01.T01:intron 30.0%
AAATATGACCTTCAATACTG+TGG + Chr2:78697883-78697902 None:intergenic 30.0%
AAGTTATTCTTGTGGATGAT+GGG - Chr2:78697686-78697705 MsG0280011035.01.T01:intron 30.0%
ACATTTGTCGATAGAGTATA+TGG - Chr2:78699785-78699804 MsG0280011035.01.T01:five_prime_UTR 30.0%
AGATAGAAGAAAATTACGGA+AGG + Chr2:78697445-78697464 None:intergenic 30.0%
ATATGAAACTAAGGTAAGCT+AGG + Chr2:78699748-78699767 None:intergenic 30.0%
ATTAGTTGCTGTGTTAGTAA+AGG - Chr2:78698953-78698972 MsG0280011035.01.T01:intron 30.0%
ATTTGATGTGGTCAATTTGT+AGG - Chr2:78698270-78698289 MsG0280011035.01.T01:CDS 30.0%
CAGAACAACAAAAACATATC+AGG + Chr2:78698536-78698555 None:intergenic 30.0%
CCAAAAAATAGAATAGGTCA+CGG + Chr2:78698109-78698128 None:intergenic 30.0%
GAAAATACTTGTAGAGTAGA+TGG - Chr2:78699570-78699589 MsG0280011035.01.T01:five_prime_UTR 30.0%
GGAATAGAAAGTTAACAAAC+AGG - Chr2:78698433-78698452 MsG0280011035.01.T01:intron 30.0%
TACAGCTTAGATTCAACATA+TGG + Chr2:78699337-78699356 None:intergenic 30.0%
TACTCTACAAGTATTTGAGA+AGG + Chr2:78699661-78699680 None:intergenic 30.0%
TATATGGAAGTTCAAAGCTT+GGG - Chr2:78699801-78699820 MsG0280011035.01.T01:five_prime_UTR 30.0%
TCAAATACTTGTAGAGTAGA+TGG - Chr2:78699663-78699682 MsG0280011035.01.T01:intron 30.0%
TCGTTCTTTGTAGACTTTAT+AGG - Chr2:78698909-78698928 MsG0280011035.01.T01:intron 30.0%
TGTAACCACAAGAATAAACA+TGG + Chr2:78698167-78698186 None:intergenic 30.0%
TGTTGTAAAACAATTGCAAC+AGG - Chr2:78697729-78697748 MsG0280011035.01.T01:intron 30.0%
TTAAGGATTTGAATGCTTGT+TGG - Chr2:78699594-78699613 MsG0280011035.01.T01:five_prime_UTR 30.0%
TTAGGTATAGAGCTTGATAA+CGG - Chr2:78698824-78698843 MsG0280011035.01.T01:intron 30.0%
TTGAGTCGTTCATTATATGT+AGG + Chr2:78697389-78697408 None:intergenic 30.0%
TTTAGTCACTGAATTTGCAA+GGG + Chr2:78698069-78698088 None:intergenic 30.0%
! ACTGCTTTCTGAAAAAGAAA+AGG + Chr2:78698651-78698670 None:intergenic 30.0%
! ATCGATTCAAAAGAATGCAA+TGG + Chr2:78699308-78699327 None:intergenic 30.0%
! TTCTTGCACAAACACTTTTA+TGG - Chr2:78698773-78698792 MsG0280011035.01.T01:intron 30.0%
! TTTATTGTGTTTGCTACATC+TGG - Chr2:78699630-78699649 MsG0280011035.01.T01:intron 30.0%
! TTTTAGTCACTGAATTTGCA+AGG + Chr2:78698070-78698089 None:intergenic 30.0%
!! CGGAAATTTTGTTGTCATTA+TGG - Chr2:78698326-78698345 MsG0280011035.01.T01:intron 30.0%
!!! CGTGACCTATTCTATTTTTT+GGG - Chr2:78698107-78698126 MsG0280011035.01.T01:intron 30.0%
!!! TTTCTTTTTCAGAAAGCAGT+TGG - Chr2:78698651-78698670 MsG0280011035.01.T01:five_prime_UTR 30.0%
AACAGGTTTATGGAGAAGAT+CGG - Chr2:78697746-78697765 MsG0280011035.01.T01:intron 35.0%
AATATTTGCCAGGCTTCATT+AGG - Chr2:78698563-78698582 MsG0280011035.01.T01:intron 35.0%
AATGCGCAAACTAACAAGTA+GGG - Chr2:78698741-78698760 MsG0280011035.01.T01:intron 35.0%
ACTCTATCGACAAATGTGAT+TGG + Chr2:78699782-78699801 None:intergenic 35.0%
AGTACGACTGTCATTCAAAT+TGG + Chr2:78699500-78699519 None:intergenic 35.0%
ATATGGAAGTTCAAAGCTTG+GGG - Chr2:78699802-78699821 MsG0280011035.01.T01:five_prime_UTR 35.0%
ATGATGTCAACATAACAACC+AGG + Chr2:78699083-78699102 None:intergenic 35.0%
ATGCTTCATGCCATGAATAT+AGG + Chr2:78698301-78698320 None:intergenic 35.0%
ATGTGGTCAATTTGTAGGTA+CGG - Chr2:78698275-78698294 MsG0280011035.01.T01:CDS 35.0%
CAAACAGGACTTGAATATGT+TGG - Chr2:78698448-78698467 MsG0280011035.01.T01:intron 35.0%
CATGAGTTAGATGTGTAGTT+AGG - Chr2:78699107-78699126 MsG0280011035.01.T01:intron 35.0%
CCTGTAGACATATGAAACTA+AGG + Chr2:78699757-78699776 None:intergenic 35.0%
CCTTAGTTTCATATGTCTAC+AGG - Chr2:78699754-78699773 MsG0280011035.01.T01:intron 35.0%
GAAGTTATTCTTGTGGATGA+TGG - Chr2:78697685-78697704 MsG0280011035.01.T01:intron 35.0%
GAGATTGTTGAATACCTGAA+AGG - Chr2:78699830-78699849 MsG0280011035.01.T01:five_prime_UTR 35.0%
GATAAAACTGGCATTTGATG+TGG - Chr2:78698258-78698277 MsG0280011035.01.T01:CDS 35.0%
GTATATGGAAGTTCAAAGCT+TGG - Chr2:78699800-78699819 MsG0280011035.01.T01:five_prime_UTR 35.0%
TAATGCGCAAACTAACAAGT+AGG - Chr2:78698740-78698759 MsG0280011035.01.T01:intron 35.0%
TAGTCATCAGAAGATATACC+AGG + Chr2:78699856-78699875 None:intergenic 35.0%
TTCAAATTACCCACTTGGAT+AGG - Chr2:78699385-78699404 MsG0280011035.01.T01:intron 35.0%
! AAAAGGCAAGAGTTAAGTTG+TGG + Chr2:78698634-78698653 None:intergenic 35.0%
! ATGAAGCCTGGCAAATATTT+TGG + Chr2:78698562-78698581 None:intergenic 35.0%
! ATTATGCACCACAGTATTGA+AGG - Chr2:78697872-78697891 MsG0280011035.01.T01:intron 35.0%
! TTTGATATGGTACCCTTTTC+TGG + Chr2:78699014-78699033 None:intergenic 35.0%
!! AAAAGGGTACCATATCAAAG+AGG - Chr2:78699015-78699034 MsG0280011035.01.T01:intron 35.0%
!! ACGGAAGGTGTTTGAAAATA+AGG + Chr2:78697430-78697449 None:intergenic 35.0%
!!! CCGTGACCTATTCTATTTTT+TGG - Chr2:78698106-78698125 MsG0280011035.01.T01:intron 35.0%
AATCTCAAACCAGTCAACAG+GGG + Chr2:78698880-78698899 None:intergenic 40.0%
ACAACATCTTGAGTACCATC+AGG + Chr2:78697715-78697734 None:intergenic 40.0%
ACAGAGTGATAAGCTTGAAC+AGG + Chr2:78699712-78699731 None:intergenic 40.0%
AGTTGTTAAGAGCAAGACCT+AGG - Chr2:78698186-78698205 MsG0280011035.01.T01:CDS 40.0%
ATAGTACGAGCATCCAGAAA+AGG - Chr2:78698998-78699017 MsG0280011035.01.T01:intron 40.0%
ATGCGCAAACTAACAAGTAG+GGG - Chr2:78698742-78698761 MsG0280011035.01.T01:five_prime_UTR 40.0%
CAATCTCAAACCAGTCAACA+GGG + Chr2:78698881-78698900 None:intergenic 40.0%
CAGAGTGATAAGCTTGAACA+GGG + Chr2:78699711-78699730 None:intergenic 40.0%
CTGATATAGTTACAGGGACT+CGG - Chr2:78698683-78698702 MsG0280011035.01.T01:intron 40.0%
CTTGTAGAGTAGATGGCTTA+AGG - Chr2:78699577-78699596 MsG0280011035.01.T01:five_prime_UTR 40.0%
GTTATGTCATGTCATGTGTG+TGG - Chr2:78697497-78697516 MsG0280011035.01.T01:intron 40.0%
TAGTACGAGCATCCAGAAAA+GGG - Chr2:78698999-78699018 MsG0280011035.01.T01:intron 40.0%
TATGGAAGTTCAAAGCTTGG+GGG - Chr2:78699803-78699822 MsG0280011035.01.T01:five_prime_UTR 40.0%
TCAATCTCAAACCAGTCAAC+AGG + Chr2:78698882-78698901 None:intergenic 40.0%
TGCGGTTTCTTAATTCGTGA+GGG - Chr2:78699038-78699057 MsG0280011035.01.T01:intron 40.0%
TTCAGAAAGCAGTTGGAAAC+TGG - Chr2:78698658-78698677 MsG0280011035.01.T01:intron 40.0%
TTTCCTTACCTAATGAAGCC+TGG + Chr2:78698574-78698593 None:intergenic 40.0%
! AGGTCACGGATTGAGTAAAT+AGG + Chr2:78698095-78698114 None:intergenic 40.0%
! CAGATTTGACAGGGTCTTTT+AGG - Chr2:78698806-78698825 MsG0280011035.01.T01:intron 40.0%
!! ACTGGTGCTGATATAGTTAC+AGG - Chr2:78698676-78698695 MsG0280011035.01.T01:intron 40.0%
!! CTGGTGCTGATATAGTTACA+GGG - Chr2:78698677-78698696 MsG0280011035.01.T01:intron 40.0%
AACGAGTTGCTCACTGTTTC+CGG + Chr2:78697197-78697216 None:intergenic 45.0%
AACTCGCCGGAGTTAGTTAT+CGG - Chr2:78697168-78697187 MsG0280011035.01.T01:CDS 45.0%
AAGAGCAAGACCTAGGAAGA+TGG - Chr2:78698193-78698212 MsG0280011035.01.T01:CDS 45.0%
AGAGCAAGACCTAGGAAGAT+GGG - Chr2:78698194-78698213 MsG0280011035.01.T01:CDS 45.0%
ATGCAACAGCCTATCCAAGT+GGG + Chr2:78699397-78699416 None:intergenic 45.0%
ATGGAAGTTCAAAGCTTGGG+GGG - Chr2:78699804-78699823 MsG0280011035.01.T01:five_prime_UTR 45.0%
CTGCAGCCAAAATATTTGCC+AGG - Chr2:78698553-78698572 MsG0280011035.01.T01:intron 45.0%
GAAACCGCACCTCTTTGATA+TGG + Chr2:78699027-78699046 None:intergenic 45.0%
GAAGATATACCAGGCCTTTC+AGG + Chr2:78699847-78699866 None:intergenic 45.0%
GGTACCATATCAAAGAGGTG+CGG - Chr2:78699020-78699039 MsG0280011035.01.T01:intron 45.0%
GTAGGTACGGCCTATATTCA+TGG - Chr2:78698288-78698307 MsG0280011035.01.T01:intron 45.0%
GTGCGGTTTCTTAATTCGTG+AGG - Chr2:78699037-78699056 MsG0280011035.01.T01:intron 45.0%
TCAGACAGTTTGCAAAGCAC+AGG + Chr2:78699531-78699550 None:intergenic 45.0%
TGTATGTGCTCTGTCTGTTC+AGG - Chr2:78699257-78699276 MsG0280011035.01.T01:five_prime_UTR 45.0%
TGTTGAATACCTGAAAGGCC+TGG - Chr2:78699835-78699854 MsG0280011035.01.T01:five_prime_UTR 45.0%
TTGCCAGGCTTCATTAGGTA+AGG - Chr2:78698568-78698587 MsG0280011035.01.T01:intron 45.0%
TTGGATAGGCTGTTGCATGT+TGG - Chr2:78699399-78699418 MsG0280011035.01.T01:intron 45.0%
! AAGACCTAGGAAGATGGGTT+AGG - Chr2:78698199-78698218 MsG0280011035.01.T01:CDS 45.0%
! ACAGGGACTCGGTATGTTAA+AGG - Chr2:78698694-78698713 MsG0280011035.01.T01:intron 45.0%
! GCACAAACACTTTTATGGCC+CGG - Chr2:78698778-78698797 MsG0280011035.01.T01:intron 45.0%
ACTCGGTATGTTAAAGGCGG+TGG - Chr2:78698700-78698719 MsG0280011035.01.T01:intron 50.0%
CACACCTAACCCATCTTCCT+AGG + Chr2:78698206-78698225 None:intergenic 50.0%
CATGCAACAGCCTATCCAAG+TGG + Chr2:78699398-78699417 None:intergenic 50.0%
CCGGTGTCTCAGATTTGACA+GGG - Chr2:78698797-78698816 MsG0280011035.01.T01:intron 50.0%
GTTAAAGGCGGTGGTGTACA+TGG - Chr2:78698709-78698728 MsG0280011035.01.T01:intron 50.0%
TTTGTTGCTCCCCTGTTGAC+TGG - Chr2:78698868-78698887 MsG0280011035.01.T01:intron 50.0%
! CCCTGTCAAATCTGAGACAC+CGG + Chr2:78698800-78698819 None:intergenic 50.0%
! CCTGTCAAATCTGAGACACC+GGG + Chr2:78698799-78698818 None:intergenic 50.0%
! GGGACTCGGTATGTTAAAGG+CGG - Chr2:78698697-78698716 MsG0280011035.01.T01:intron 50.0%
! TCTAAAGGGCTCTAGTGCAG+CGG + Chr2:78697595-78697614 None:intergenic 50.0%
AAGGCGGTGGTGTACATGGA+TGG - Chr2:78698713-78698732 MsG0280011035.01.T01:intron 55.0%
CATGGCATGAAGCATGCGTC+CGG - Chr2:78698306-78698325 MsG0280011035.01.T01:intron 55.0%
CCCGGTGTCTCAGATTTGAC+AGG - Chr2:78698796-78698815 MsG0280011035.01.T01:intron 55.0%
CGGAGTTAGTTATCGGCCAC+CGG - Chr2:78697175-78697194 MsG0280011035.01.T01:CDS 55.0%
CGGTGGCCGATAACTAACTC+CGG + Chr2:78697177-78697196 None:intergenic 55.0%
GAGTTGCTCACTGTTTCCGG+TGG + Chr2:78697194-78697213 None:intergenic 55.0%
!! GTGGATGATGGGAGTCCTGA+TGG - Chr2:78697697-78697716 MsG0280011035.01.T01:intron 55.0%
TCGCGCTGAACTCAACTCGC+CGG - Chr2:78697155-78697174 MsG0280011035.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 78697082 78699880 78697082 ID=MsG0280011035.01;Name=MsG0280011035.01
Chr2 mRNA 78697082 78699880 78697082 ID=MsG0280011035.01.T01;Parent=MsG0280011035.01;Name=MsG0280011035.01.T01;_AED=0.43;_eAED=0.48;_QI=390|0.87|0.77|1|0.5|0.44|9|0|192
Chr2 exon 78697082 78697280 78697082 ID=MsG0280011035.01.T01:exon:21336;Parent=MsG0280011035.01.T01
Chr2 exon 78697909 78698040 78697909 ID=MsG0280011035.01.T01:exon:21335;Parent=MsG0280011035.01.T01
Chr2 exon 78698135 78698299 78698135 ID=MsG0280011035.01.T01:exon:21334;Parent=MsG0280011035.01.T01
Chr2 exon 78698378 78698403 78698378 ID=MsG0280011035.01.T01:exon:21333;Parent=MsG0280011035.01.T01
Chr2 exon 78698594 78698670 78698594 ID=MsG0280011035.01.T01:exon:21332;Parent=MsG0280011035.01.T01
Chr2 exon 78698742 78698774 78698742 ID=MsG0280011035.01.T01:exon:21331;Parent=MsG0280011035.01.T01
Chr2 exon 78699191 78699290 78699191 ID=MsG0280011035.01.T01:exon:21330;Parent=MsG0280011035.01.T01
Chr2 exon 78699515 78699630 78699515 ID=MsG0280011035.01.T01:exon:21329;Parent=MsG0280011035.01.T01
Chr2 exon 78699760 78699880 78699760 ID=MsG0280011035.01.T01:exon:21328;Parent=MsG0280011035.01.T01
Chr2 five_prime_UTR 78699760 78699880 78699760 ID=MsG0280011035.01.T01:five_prime_utr;Parent=MsG0280011035.01.T01
Chr2 five_prime_UTR 78699515 78699630 78699515 ID=MsG0280011035.01.T01:five_prime_utr;Parent=MsG0280011035.01.T01
Chr2 five_prime_UTR 78699191 78699290 78699191 ID=MsG0280011035.01.T01:five_prime_utr;Parent=MsG0280011035.01.T01
Chr2 five_prime_UTR 78698742 78698774 78698742 ID=MsG0280011035.01.T01:five_prime_utr;Parent=MsG0280011035.01.T01
Chr2 five_prime_UTR 78698651 78698670 78698651 ID=MsG0280011035.01.T01:five_prime_utr;Parent=MsG0280011035.01.T01
Chr2 CDS 78698594 78698650 78698594 ID=MsG0280011035.01.T01:cds;Parent=MsG0280011035.01.T01
Chr2 CDS 78698378 78698403 78698378 ID=MsG0280011035.01.T01:cds;Parent=MsG0280011035.01.T01
Chr2 CDS 78698135 78698299 78698135 ID=MsG0280011035.01.T01:cds;Parent=MsG0280011035.01.T01
Chr2 CDS 78697909 78698040 78697909 ID=MsG0280011035.01.T01:cds;Parent=MsG0280011035.01.T01
Chr2 CDS 78697082 78697280 78697082 ID=MsG0280011035.01.T01:cds;Parent=MsG0280011035.01.T01
Gene Sequence

>MsG0280011035.01.T01

ATGAAGCATGCGTCCGGAAATTTTGTTGTCATTATGGATGCTGATCTATCGCACCATCCAAAATATTTGCCAGGCTTCATTAGAAAGCAGTTGGAAACTGGTGCTGATATAGTTACAGGGACTCGGTATGTTAAAGGCGGTGGTGTACATGGATGGAATCTAATGCGCAAACTAACAAGTAGGGGAGCAAATGTTCTTGCACAAACACTTTTATGGCCCGGTGTCTCAGATTTGACAGGGTCTTTTAGACTTTATAGGAAAACAGTGCTTGAAGATATCATTAGTTGCTGTGTTAGTAAAGGATATGTCTTTCAAATGGAGATGATAGTACGAGCATCCAGAAAAGGGTACCATATCAAAGAGGTGCGGTTTCTTAATTCATGGCTTAAAGTTCTTAATGTAACTACCCTGTTCAAGCTTATCACTCTGTTCATTATTCAGTTCCTAGCTTACCTTAGTTTCATATGTCTACAGGTTCCAATCACATTTGTCGATAGAGTATATGGAAGTTCAAAGCTTGGGGGGTCAGAGATTGTTGAATACCTGAAAGGCCTGGTATATCTTCTGATGACTACATAA
Protein sequence

>MsG0280011035.01.T01

MKHASGNFVVIMDADLSHHPKYLPGFIRKQLETGADIVTGTRYVKGGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYRKTVLEDIISCCVSKGYVFQMEMIVRASRKGYHIKEVRFLNSWLKVLNVTTLFKLITLFIIQFLAYLSFICLQVPITFVDRVYGSSKLGGSEIVEYLKGLVYLLMTT*