AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013957.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013957.01.T01 MTR_3g035600 99.306 432 3 0 1 432 332 763 0.0 872
MsG0380013957.01.T01 MTR_3g035600 48.132 455 201 9 1 437 1059 1496 1.35e-128 405
MsG0380013957.01.T01 MTR_0002s0580 96.145 441 17 0 1 441 308 748 0.0 872
MsG0380013957.01.T01 MTR_0002s0580 48.571 455 199 9 1 437 994 1431 1.02e-129 407
MsG0380013957.01.T01 MTR_4g051177 99.624 266 1 0 1 266 316 581 0.0 540
MsG0380013957.01.T01 MTR_7g051460 94.737 114 6 0 116 229 5 118 2.20e-72 227
MsG0380013957.01.T01 MTR_7g025010 61.677 167 35 4 50 214 416 555 5.68e-51 181
MsG0380013957.01.T01 MTR_1g084890 40.777 206 106 5 159 360 4 197 2.30e-40 143
MsG0380013957.01.T01 MTR_0187s0090 46.575 146 67 3 209 354 31 165 4.26e-38 136
MsG0380013957.01.T01 MTR_2g100210 46.429 84 41 1 336 415 2 85 2.69e-16 78.2
MsG0380013957.01.T01 MTR_8g020540 53.571 56 26 0 233 288 16 71 1.13e-14 69.3
MsG0380013957.01.T01 MTR_7g051470 50.000 56 27 1 214 268 18 73 6.84e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013957.01.T01 ATCG00350 97.517 443 11 0 1 443 308 750 0.0 883
MsG0380013957.01.T01 ATCG00340 47.912 455 202 9 1 437 290 727 5.76e-134 403

Find 127 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGTCTTCTTAGGATTATTT+TGG 0.179420 3:-48507017 MsG0380013957.01.T01:CDS
TTATGACCTTGGCCTGTAAA+TGG 0.208849 3:+48507798 None:intergenic
GGTGGCTCCGCGATTTCTTA+TGG 0.209964 3:-48506855 MsG0380013957.01.T01:CDS
AACTAAAAGCCCATACAAAA+TGG 0.216247 3:+48506761 None:intergenic
CAGAGTTCGATTACCATTAA+TGG 0.241096 3:-48506877 MsG0380013957.01.T01:CDS
GTCATATGTATAGAACTAAT+TGG 0.254482 3:-48507866 None:intergenic
TATTCAGCGGGCGTGGTTAT+TGG 0.259323 3:-48506729 MsG0380013957.01.T01:CDS
CCATACCTAGCTACTGACTA+TGG 0.261418 3:-48507660 MsG0380013957.01.T01:CDS
GCCTGTAAATGGACCTTTAT+GGG 0.263647 3:+48507809 None:intergenic
AATGATACCATGAGTGCTTT+AGG 0.272004 3:-48507417 MsG0380013957.01.T01:CDS
GGCCTGTAAATGGACCTTTA+TGG 0.278198 3:+48507808 None:intergenic
GCTTGGGATCACGTCTTCTT+AGG 0.285396 3:-48507027 MsG0380013957.01.T01:CDS
TCCCAGGTAATTCAGTCTTA+TGG 0.314824 3:-48506823 MsG0380013957.01.T01:CDS
GAGCATGCCATGACGTTGTT+AGG 0.314831 3:+48507760 None:intergenic
AACTTATTGAATCCATCGTT+TGG 0.322049 3:-48506702 MsG0380013957.01.T01:CDS
GAAAATGCAGTCAGATGTTT+GGG 0.325299 3:-48506953 MsG0380013957.01.T01:CDS
GTGGCTCCGCGATTTCTTAT+GGG 0.331473 3:-48506854 MsG0380013957.01.T01:CDS
ATCGCGGAGCCACCCATTAA+TGG 0.333155 3:+48506864 None:intergenic
CAATCATATCACATCTCAAC+TGG 0.341001 3:-48507485 MsG0380013957.01.T01:CDS
CTGGTGCTTGCTGTTGCACC+AGG 0.342038 3:+48507294 None:intergenic
TCATATGTATAGAACTAATT+GGG 0.342728 3:-48507865 None:intergenic
GCCCATAAAGGTCCATTTAC+AGG 0.345598 3:-48507810 MsG0380013957.01.T01:CDS
TCTATTAACCTAGCTATGTT+AGG 0.360076 3:-48507732 MsG0380013957.01.T01:CDS
AGGAGTAACCCATTACCTTC+TGG 0.371976 3:-48506608 MsG0380013957.01.T01:CDS
GGAAAATGCAGTCAGATGTT+TGG 0.378696 3:-48506954 MsG0380013957.01.T01:CDS
ATGATACCATGAGTGCTTTA+GGG 0.380891 3:-48507416 MsG0380013957.01.T01:CDS
TCACACATCACATGTGGATT+GGG 0.381837 3:-48507620 MsG0380013957.01.T01:CDS
GGTTCCTCATTATCTGCATA+TGG 0.386475 3:-48506802 MsG0380013957.01.T01:CDS
CGTGATCCCAAGCGGATACT+TGG 0.391033 3:+48507037 None:intergenic
AAACCAAGATTTGCTTTATC+CGG 0.396931 3:+48507099 None:intergenic
GCTTTGTTACCTATTCCATT+AGG 0.401056 3:-48507225 MsG0380013957.01.T01:CDS
ATACCGGATAAAGCAAATCT+TGG 0.401966 3:-48507102 MsG0380013957.01.T01:CDS
AGAGTTCGATTACCATTAAT+GGG 0.405649 3:-48506876 MsG0380013957.01.T01:CDS
TCTGCAGTTCCTAATGGAAT+AGG 0.406087 3:+48507216 None:intergenic
TATAGAACTAATTGGGGTAT+TGG 0.411228 3:-48507858 MsG0380013957.01.T01:CDS
GAATTATTGCAGTAGGATAA+TGG 0.419421 3:-48506549 None:intergenic
ACTTATTGAATCCATCGTTT+GGG 0.421489 3:-48506701 MsG0380013957.01.T01:CDS
TACAACCTGTCTTTGCTCAA+TGG 0.423189 3:-48507356 MsG0380013957.01.T01:CDS
GCACCAGGGGCCGTTGTACC+AGG 0.426604 3:+48507309 None:intergenic
TTGGGGCGGTGGTGATTTAG+TGG 0.428676 3:-48507265 MsG0380013957.01.T01:CDS
TTCACACATCACATGTGGAT+TGG 0.431451 3:-48507621 MsG0380013957.01.T01:CDS
CGGTTCCCTTGTGATGGACC+TGG 0.443562 3:-48507075 MsG0380013957.01.T01:CDS
CCTTGTGATGGACCTGGAAG+AGG 0.443807 3:-48507069 MsG0380013957.01.T01:CDS
GGAGTAACCCATTACCTTCT+GGG 0.445728 3:-48506607 MsG0380013957.01.T01:CDS
CAATTCCACCCAGAAGGTAA+TGG 0.450163 3:+48506599 None:intergenic
AATTCCACCCAGAAGGTAAT+GGG 0.452661 3:+48506600 None:intergenic
CATATAGACCTTTATGACCT+TGG 0.454551 3:+48507787 None:intergenic
ACCACCGCCCCAAGTCAAAC+TGG 0.455420 3:+48507275 None:intergenic
ACGGTATTGATACTCCTAAA+AGG 0.462077 3:-48507153 MsG0380013957.01.T01:CDS
AGATCGTTGTATCGAGTAGT+TGG 0.464830 3:+48507537 None:intergenic
AAGGCTCTAGGCTGAGTAGC+AGG 0.466471 3:+48506655 None:intergenic
CAGCAAGCACCAGTTTGACT+TGG 0.466663 3:-48507284 MsG0380013957.01.T01:CDS
CCGCGATTTCTTATGGGCGC+AGG 0.468581 3:-48506848 MsG0380013957.01.T01:CDS
AGCAAGCACCAGTTTGACTT+GGG 0.471379 3:-48507283 MsG0380013957.01.T01:CDS
CGGTGGTGATTTAGTGGCAG+TGG 0.476707 3:-48507259 MsG0380013957.01.T01:CDS
ACCAGTTTGACTTGGGGCGG+TGG 0.479028 3:-48507276 MsG0380013957.01.T01:CDS
CATATGGTGAGCTACAATAA+TGG 0.482651 3:+48507701 None:intergenic
CTTGTGATGGACCTGGAAGA+GGG 0.485987 3:-48507068 MsG0380013957.01.T01:CDS
TCAGTAGCTAGGTATGGATA+AGG 0.486306 3:+48507666 None:intergenic
CTTATGGGCGCAGGCATCCC+AGG 0.486815 3:-48506839 MsG0380013957.01.T01:CDS
ACTAAAAGCCCATACAAAAT+GGG 0.487362 3:+48506762 None:intergenic
TTTACAGGCCAAGGTCATAA+AGG 0.488025 3:-48507795 MsG0380013957.01.T01:CDS
CGCTTTAGCACCTGGTACAA+CGG 0.494368 3:-48507319 MsG0380013957.01.T01:CDS
TAGAGCCTTGAGCATTGTAC+AGG 0.496375 3:-48506641 MsG0380013957.01.T01:CDS
AAGGAGGCATAGCATACATA+TGG 0.504038 3:+48507685 None:intergenic
TGTATCCATTGAGCAAAGAC+AGG 0.505296 3:+48507351 None:intergenic
TTAGCAAGAATTATTGCAGT+AGG 0.506140 3:-48506556 MsG0380013957.01.T01:CDS
GTTTAATGTTTCTATTCAGC+GGG 0.509455 3:-48506741 MsG0380013957.01.T01:CDS
CCATAGTCAGTAGCTAGGTA+TGG 0.512147 3:+48507660 None:intergenic
ATGTTTCTATTCAGCGGGCG+TGG 0.515878 3:-48506736 MsG0380013957.01.T01:CDS
TCGTAGCTCACGATTGATAC+CGG 0.518428 3:-48507118 MsG0380013957.01.T01:CDS
TATCAGAAAACATATCTTGA+GGG 0.525854 3:+48507391 None:intergenic
TAGTAATATTCCATTTCAGT+TGG 0.528021 3:-48506975 MsG0380013957.01.T01:CDS
GCACCTGGTACAACGGCCCC+TGG 0.528550 3:-48507312 MsG0380013957.01.T01:CDS
TGTACAATGCTCAAGGCTCT+AGG 0.531036 3:+48506643 None:intergenic
AACCATAAGACTGAATTACC+TGG 0.536677 3:+48506821 None:intergenic
AAAGGTCCATTTACAGGCCA+AGG 0.537287 3:-48507804 MsG0380013957.01.T01:CDS
TGCATTTACAATTCACGTGA+CGG 0.539121 3:-48507172 MsG0380013957.01.T01:CDS
AGTTTAATGTTTCTATTCAG+CGG 0.541369 3:-48506742 MsG0380013957.01.T01:CDS
GACATGCCAAGTATCCGCTT+GGG 0.542528 3:-48507043 MsG0380013957.01.T01:CDS
ATTGTACAGGGACGTGCTGT+AGG 0.545781 3:-48506628 MsG0380013957.01.T01:CDS
GGACATGCCAAGTATCCGCT+TGG 0.547118 3:-48507044 MsG0380013957.01.T01:CDS
AGCACCAGTTTGACTTGGGG+CGG 0.550477 3:-48507279 MsG0380013957.01.T01:CDS
TGGGGTAGTATAAATGATCA+AGG 0.551843 3:-48506934 MsG0380013957.01.T01:CDS
AATACCCACGCTTTAGCACC+TGG 0.552085 3:-48507327 MsG0380013957.01.T01:CDS
TCAAAGAGCCTAACATAGCT+AGG 0.552888 3:+48507724 None:intergenic
GGTGGTGATTTAGTGGCAGT+GGG 0.553216 3:-48507258 MsG0380013957.01.T01:CDS
TGTGATGGACCTGGAAGAGG+GGG 0.553735 3:-48507066 MsG0380013957.01.T01:CDS
GGTGCTTGCTGTTGCACCAG+GGG 0.560321 3:+48507296 None:intergenic
CCTCTTCCAGGTCCATCACA+AGG 0.563214 3:+48507069 None:intergenic
AAGACCATATGCAGATAATG+AGG 0.563400 3:+48506798 None:intergenic
CACACATCACATGTGGATTG+GGG 0.565985 3:-48507619 MsG0380013957.01.T01:CDS
CATACCTAGCTACTGACTAT+GGG 0.569320 3:-48507659 MsG0380013957.01.T01:CDS
AGGGCGCCCTAAAGCACTCA+TGG 0.572639 3:+48507410 None:intergenic
ACTAATTGGGGTATTGGTCA+TGG 0.575441 3:-48507852 MsG0380013957.01.T01:CDS
TGGTGCTTGCTGTTGCACCA+GGG 0.586980 3:+48507295 None:intergenic
GGAGTAGTAACTCATATCAC+AGG 0.592996 3:-48506913 MsG0380013957.01.T01:CDS
TTGTGATGGACCTGGAAGAG+GGG 0.597055 3:-48507067 MsG0380013957.01.T01:CDS
GTGTCCCATAGTCAGTAGCT+AGG 0.599930 3:+48507655 None:intergenic
TTGTACCAGGTGCTAAAGCG+TGG 0.601575 3:+48507322 None:intergenic
CATTGTTCACACATCACATG+TGG 0.601835 3:-48507626 MsG0380013957.01.T01:CDS
ACGTCCCTGTACAATGCTCA+AGG 0.614360 3:+48506636 None:intergenic
GTATCAGAAAACATATCTTG+AGG 0.618403 3:+48507390 None:intergenic
ACCATAAGACTGAATTACCT+GGG 0.618611 3:+48506822 None:intergenic
TTTATTATGAGCCCAAACGA+TGG 0.622137 3:+48506690 None:intergenic
TAAGAAGAATGCCCACGTTG+TGG 0.631859 3:+48506576 None:intergenic
ATGAGATCCTAACAACGTCA+TGG 0.632139 3:-48507767 MsG0380013957.01.T01:CDS
ACACATCACATGTGGATTGG+GGG 0.634734 3:-48507618 MsG0380013957.01.T01:CDS
CATATGTATAGAACTAATTG+GGG 0.638756 3:-48507864 MsG0380013957.01.T01:CDS
AATCATATCACATCTCAACT+GGG 0.646578 3:-48507484 MsG0380013957.01.T01:CDS
GGTGATTTAGTGGCAGTGGG+CGG 0.646734 3:-48507255 MsG0380013957.01.T01:CDS
GTAGCTAGGTATGGATAAGG+AGG 0.647093 3:+48507669 None:intergenic
TTGTGGCAATTCCACCCAGA+AGG 0.649144 3:+48506593 None:intergenic
CTCTTCCAGGTCCATCACAA+GGG 0.657181 3:+48507070 None:intergenic
TGGGTGGAATTGCCACAACG+TGG 0.661193 3:-48506588 MsG0380013957.01.T01:CDS
GCAAGCACCAGTTTGACTTG+GGG 0.661875 3:-48507282 MsG0380013957.01.T01:CDS
TGTACCAGGTGCTAAAGCGT+GGG 0.666858 3:+48507323 None:intergenic
AGAGCCTTGAGCATTGTACA+GGG 0.668341 3:-48506640 MsG0380013957.01.T01:CDS
GACAGGTTGTAATTGTATAG+CGG 0.670000 3:+48507368 None:intergenic
TAAGAAGACGTGATCCCAAG+CGG 0.675497 3:+48507029 None:intergenic
GTGATGGACCTGGAAGAGGG+GGG 0.678610 3:-48507065 MsG0380013957.01.T01:CDS
GGGTGGAATTGCCACAACGT+GGG 0.678793 3:-48506587 MsG0380013957.01.T01:CDS
GTTCGATTACCATTAATGGG+TGG 0.679372 3:-48506873 MsG0380013957.01.T01:CDS
CCTGCGCCCATAAGAAATCG+CGG 0.679585 3:+48506848 None:intergenic
GTAGTAACTCATATCACAGG+AGG 0.680008 3:-48506910 MsG0380013957.01.T01:CDS
GTAACCCATTACCTTCTGGG+TGG 0.699177 3:-48506604 MsG0380013957.01.T01:CDS
AAAATGCAGTCAGATGTTTG+GGG 0.776320 3:-48506952 MsG0380013957.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGGTATAAAAGATATTTTAG+AGG - Chr3:48506581-48506600 MsG0380013957.01.T01:CDS 20.0%
! ATAGTCTCTTACCATAAAAA+TGG + Chr3:48506853-48506872 None:intergenic 25.0%
! TAGTAATATTCCATTTCAGT+TGG - Chr3:48507438-48507457 MsG0380013957.01.T01:CDS 25.0%
! TATCAGAAAACATATCTTGA+GGG + Chr3:48507025-48507044 None:intergenic 25.0%
!! AGTTTAATGTTTCTATTCAG+CGG - Chr3:48507671-48507690 MsG0380013957.01.T01:CDS 25.0%
!!! ATAAAGCAAATCTTGGTTTT+CGG - Chr3:48507318-48507337 MsG0380013957.01.T01:CDS 25.0%
AAAAAATCTGCAGTTCCTAA+TGG + Chr3:48507206-48507225 None:intergenic 30.0%
AACTAAAAGCCCATACAAAA+TGG + Chr3:48507655-48507674 None:intergenic 30.0%
AACTTATTGAATCCATCGTT+TGG - Chr3:48507711-48507730 MsG0380013957.01.T01:CDS 30.0%
AATCATATCACATCTCAACT+GGG - Chr3:48506929-48506948 MsG0380013957.01.T01:CDS 30.0%
ACTAAAAGCCCATACAAAAT+GGG + Chr3:48507654-48507673 None:intergenic 30.0%
ACTTATTGAATCCATCGTTT+GGG - Chr3:48507712-48507731 MsG0380013957.01.T01:CDS 30.0%
AGAGTTCGATTACCATTAAT+GGG - Chr3:48507537-48507556 MsG0380013957.01.T01:CDS 30.0%
GTATCAGAAAACATATCTTG+AGG + Chr3:48507026-48507045 None:intergenic 30.0%
TATAGAACTAATTGGGGTAT+TGG - Chr3:48506555-48506574 MsG0380013957.01.T01:CDS 30.0%
TCTATTAACCTAGCTATGTT+AGG - Chr3:48506681-48506700 MsG0380013957.01.T01:CDS 30.0%
TTAGCAAGAATTATTGCAGT+AGG - Chr3:48507857-48507876 MsG0380013957.01.T01:CDS 30.0%
! AAACCAAGATTTGCTTTATC+CGG + Chr3:48507317-48507336 None:intergenic 30.0%
! AACTGGGTGTGTATATTTTT+AGG - Chr3:48506945-48506964 MsG0380013957.01.T01:CDS 30.0%
! ACGTCTTCTTAGGATTATTT+TGG - Chr3:48507396-48507415 MsG0380013957.01.T01:CDS 30.0%
! GTTTAATGTTTCTATTCAGC+GGG - Chr3:48507672-48507691 MsG0380013957.01.T01:CDS 30.0%
!! TTTTTAGGCTTTCACAGTTT+TGG - Chr3:48506960-48506979 MsG0380013957.01.T01:CDS 30.0%
!!! ATTAGGAACTGCAGATTTTT+TGG - Chr3:48507205-48507224 MsG0380013957.01.T01:CDS 30.0%
!!! GCATATGGTCTTTTTTTCTT+AGG - Chr3:48507626-48507645 MsG0380013957.01.T01:CDS 30.0%
AAAATGCAGTCAGATGTTTG+GGG - Chr3:48507461-48507480 MsG0380013957.01.T01:CDS 35.0%
AACCATAAGACTGAATTACC+TGG + Chr3:48507595-48507614 None:intergenic 35.0%
AAGACCATATGCAGATAATG+AGG + Chr3:48507618-48507637 None:intergenic 35.0%
AATGATACCATGAGTGCTTT+AGG - Chr3:48506996-48507015 MsG0380013957.01.T01:CDS 35.0%
ACCATAAGACTGAATTACCT+GGG + Chr3:48507594-48507613 None:intergenic 35.0%
ATACCGGATAAAGCAAATCT+TGG - Chr3:48507311-48507330 MsG0380013957.01.T01:CDS 35.0%
ATGATACCATGAGTGCTTTA+GGG - Chr3:48506997-48507016 MsG0380013957.01.T01:CDS 35.0%
CAATCATATCACATCTCAAC+TGG - Chr3:48506928-48506947 MsG0380013957.01.T01:CDS 35.0%
CAGAGTTCGATTACCATTAA+TGG - Chr3:48507536-48507555 MsG0380013957.01.T01:CDS 35.0%
CATATAGACCTTTATGACCT+TGG + Chr3:48506629-48506648 None:intergenic 35.0%
CATATGGTGAGCTACAATAA+TGG + Chr3:48506715-48506734 None:intergenic 35.0%
GAAAATGCAGTCAGATGTTT+GGG - Chr3:48507460-48507479 MsG0380013957.01.T01:CDS 35.0%
GACAGGTTGTAATTGTATAG+CGG + Chr3:48507048-48507067 None:intergenic 35.0%
TGCATTTACAATTCACGTGA+CGG - Chr3:48507241-48507260 MsG0380013957.01.T01:CDS 35.0%
TGGGGTAGTATAAATGATCA+AGG - Chr3:48507479-48507498 MsG0380013957.01.T01:CDS 35.0%
TTTATTATGAGCCCAAACGA+TGG + Chr3:48507726-48507745 None:intergenic 35.0%
! ACTGCATTTTCCAACTGAAA+TGG + Chr3:48507451-48507470 None:intergenic 35.0%
! GAGCAAATAGAACTCCTTTT+AGG + Chr3:48507277-48507296 None:intergenic 35.0%
! GCTTTGTTACCTATTCCATT+AGG - Chr3:48507188-48507207 MsG0380013957.01.T01:CDS 35.0%
!! ACGGTATTGATACTCCTAAA+AGG - Chr3:48507260-48507279 MsG0380013957.01.T01:CDS 35.0%
!! GATATTTTAGAGGCCCATAA+AGG - Chr3:48506591-48506610 MsG0380013957.01.T01:CDS 35.0%
AATTCCACCCAGAAGGTAAT+GGG + Chr3:48507816-48507835 None:intergenic 40.0%
AGATCGTTGTATCGAGTAGT+TGG + Chr3:48506879-48506898 None:intergenic 40.0%
ATGAGATCCTAACAACGTCA+TGG - Chr3:48506646-48506665 MsG0380013957.01.T01:CDS 40.0%
ATTGGGGGATTTCTCATAGT+TGG - Chr3:48506810-48506829 MsG0380013957.01.T01:CDS 40.0%
CATTGTTCACACATCACATG+TGG - Chr3:48506787-48506806 MsG0380013957.01.T01:CDS 40.0%
GCCTGTAAATGGACCTTTAT+GGG + Chr3:48506607-48506626 None:intergenic 40.0%
GGAAAATGCAGTCAGATGTT+TGG - Chr3:48507459-48507478 MsG0380013957.01.T01:CDS 40.0%
GGAGTAGTAACTCATATCAC+AGG - Chr3:48507500-48507519 MsG0380013957.01.T01:CDS 40.0%
GGTTCCTCATTATCTGCATA+TGG - Chr3:48507611-48507630 MsG0380013957.01.T01:CDS 40.0%
GTAGTAACTCATATCACAGG+AGG - Chr3:48507503-48507522 MsG0380013957.01.T01:CDS 40.0%
GTTCGATTACCATTAATGGG+TGG - Chr3:48507540-48507559 MsG0380013957.01.T01:CDS 40.0%
TACAACCTGTCTTTGCTCAA+TGG - Chr3:48507057-48507076 MsG0380013957.01.T01:CDS 40.0%
TCAAAGAGCCTAACATAGCT+AGG + Chr3:48506692-48506711 None:intergenic 40.0%
TCACACATCACATGTGGATT+GGG - Chr3:48506793-48506812 MsG0380013957.01.T01:CDS 40.0%
TCAGTAGCTAGGTATGGATA+AGG + Chr3:48506750-48506769 None:intergenic 40.0%
TCCCAGGTAATTCAGTCTTA+TGG - Chr3:48507590-48507609 MsG0380013957.01.T01:CDS 40.0%
TCTGCAGTTCCTAATGGAAT+AGG + Chr3:48507200-48507219 None:intergenic 40.0%
TGTATCCATTGAGCAAAGAC+AGG + Chr3:48507065-48507084 None:intergenic 40.0%
TTATGACCTTGGCCTGTAAA+TGG + Chr3:48506618-48506637 None:intergenic 40.0%
TTCACACATCACATGTGGAT+TGG - Chr3:48506792-48506811 MsG0380013957.01.T01:CDS 40.0%
TTTACAGGCCAAGGTCATAA+AGG - Chr3:48506618-48506637 MsG0380013957.01.T01:CDS 40.0%
! AAGGAGGCATAGCATACATA+TGG + Chr3:48506731-48506750 None:intergenic 40.0%
! CATACCTAGCTACTGACTAT+GGG - Chr3:48506754-48506773 MsG0380013957.01.T01:CDS 40.0%
! CTTAGGTGCCCATTTTGTAT+GGG - Chr3:48507643-48507662 MsG0380013957.01.T01:CDS 40.0%
! TCTTAGGTGCCCATTTTGTA+TGG - Chr3:48507642-48507661 MsG0380013957.01.T01:CDS 40.0%
!! ACTAATTGGGGTATTGGTCA+TGG - Chr3:48506561-48506580 MsG0380013957.01.T01:CDS 40.0%
!!! TGCACATGCAGCCATTTTTA+TGG - Chr3:48506839-48506858 MsG0380013957.01.T01:CDS 40.0%
AAAGGTCCATTTACAGGCCA+AGG - Chr3:48506609-48506628 MsG0380013957.01.T01:CDS 45.0%
AGGAGTAACCCATTACCTTC+TGG - Chr3:48507805-48507824 MsG0380013957.01.T01:CDS 45.0%
CAATTCCACCCAGAAGGTAA+TGG + Chr3:48507817-48507836 None:intergenic 45.0%
CCATAGTCAGTAGCTAGGTA+TGG + Chr3:48506756-48506775 None:intergenic 45.0%
GCCCATAAAGGTCCATTTAC+AGG - Chr3:48506603-48506622 MsG0380013957.01.T01:CDS 45.0%
GGAGTAACCCATTACCTTCT+GGG - Chr3:48507806-48507825 MsG0380013957.01.T01:CDS 45.0%
GGCCTGTAAATGGACCTTTA+TGG + Chr3:48506608-48506627 None:intergenic 45.0%
GTAGCTAGGTATGGATAAGG+AGG + Chr3:48506747-48506766 None:intergenic 45.0%
TAAGAAGAATGCCCACGTTG+TGG + Chr3:48507840-48507859 None:intergenic 45.0%
TAAGAAGACGTGATCCCAAG+CGG + Chr3:48507387-48507406 None:intergenic 45.0%
TCGTAGCTCACGATTGATAC+CGG - Chr3:48507295-48507314 MsG0380013957.01.T01:CDS 45.0%
TGTACAATGCTCAAGGCTCT+AGG + Chr3:48507773-48507792 None:intergenic 45.0%
! AGAGCCTTGAGCATTGTACA+GGG - Chr3:48507773-48507792 MsG0380013957.01.T01:CDS 45.0%
! AGCAAGCACCAGTTTGACTT+GGG - Chr3:48507130-48507149 MsG0380013957.01.T01:CDS 45.0%
! CACACATCACATGTGGATTG+GGG - Chr3:48506794-48506813 MsG0380013957.01.T01:CDS 45.0%
! CCATACCTAGCTACTGACTA+TGG - Chr3:48506753-48506772 MsG0380013957.01.T01:CDS 45.0%
! TAGAGCCTTGAGCATTGTAC+AGG - Chr3:48507772-48507791 MsG0380013957.01.T01:CDS 45.0%
!! ACACATCACATGTGGATTGG+GGG - Chr3:48506795-48506814 MsG0380013957.01.T01:CDS 45.0%
AATACCCACGCTTTAGCACC+TGG - Chr3:48507086-48507105 MsG0380013957.01.T01:CDS 50.0%
ACGTCCCTGTACAATGCTCA+AGG + Chr3:48507780-48507799 None:intergenic 50.0%
ATTGTACAGGGACGTGCTGT+AGG - Chr3:48507785-48507804 MsG0380013957.01.T01:CDS 50.0%
CAGCAAGCACCAGTTTGACT+TGG - Chr3:48507129-48507148 MsG0380013957.01.T01:CDS 50.0%
CGCTTTAGCACCTGGTACAA+CGG - Chr3:48507094-48507113 MsG0380013957.01.T01:CDS 50.0%
CTCTTCCAGGTCCATCACAA+GGG + Chr3:48507346-48507365 None:intergenic 50.0%
GACATGCCAAGTATCCGCTT+GGG - Chr3:48507370-48507389 MsG0380013957.01.T01:CDS 50.0%
GAGCATGCCATGACGTTGTT+AGG + Chr3:48506656-48506675 None:intergenic 50.0%
GCTTGGGATCACGTCTTCTT+AGG - Chr3:48507386-48507405 MsG0380013957.01.T01:CDS 50.0%
GGTGGTGATTTAGTGGCAGT+GGG - Chr3:48507155-48507174 MsG0380013957.01.T01:CDS 50.0%
GTAACCCATTACCTTCTGGG+TGG - Chr3:48507809-48507828 MsG0380013957.01.T01:CDS 50.0%
GTGGCTCCGCGATTTCTTAT+GGG - Chr3:48507559-48507578 MsG0380013957.01.T01:CDS 50.0%
GTGTCCCATAGTCAGTAGCT+AGG + Chr3:48506761-48506780 None:intergenic 50.0%
TATTCAGCGGGCGTGGTTAT+TGG - Chr3:48507684-48507703 MsG0380013957.01.T01:CDS 50.0%
TGTACCAGGTGCTAAAGCGT+GGG + Chr3:48507093-48507112 None:intergenic 50.0%
TTGTACCAGGTGCTAAAGCG+TGG + Chr3:48507094-48507113 None:intergenic 50.0%
TTGTGGCAATTCCACCCAGA+AGG + Chr3:48507823-48507842 None:intergenic 50.0%
! ATGTTTCTATTCAGCGGGCG+TGG - Chr3:48507677-48507696 MsG0380013957.01.T01:CDS 50.0%
! GGTTTTCGGTTCCCTTGTGA+TGG - Chr3:48507332-48507351 MsG0380013957.01.T01:CDS 50.0%
!! CTTGTGATGGACCTGGAAGA+GGG - Chr3:48507345-48507364 MsG0380013957.01.T01:CDS 50.0%
!! GCAAGCACCAGTTTGACTTG+GGG - Chr3:48507131-48507150 MsG0380013957.01.T01:CDS 50.0%
!! TTGTGATGGACCTGGAAGAG+GGG - Chr3:48507346-48507365 MsG0380013957.01.T01:CDS 50.0%
ATCGCGGAGCCACCCATTAA+TGG + Chr3:48507552-48507571 None:intergenic 55.0%
CCTCTTCCAGGTCCATCACA+AGG + Chr3:48507347-48507366 None:intergenic 55.0%
CCTGCGCCCATAAGAAATCG+CGG + Chr3:48507568-48507587 None:intergenic 55.0%
CGGTGGTGATTTAGTGGCAG+TGG - Chr3:48507154-48507173 MsG0380013957.01.T01:CDS 55.0%
CGTGATCCCAAGCGGATACT+TGG + Chr3:48507379-48507398 None:intergenic 55.0%
GGACATGCCAAGTATCCGCT+TGG - Chr3:48507369-48507388 MsG0380013957.01.T01:CDS 55.0%
GGGTGGAATTGCCACAACGT+GGG - Chr3:48507826-48507845 MsG0380013957.01.T01:CDS 55.0%
GGTGATTTAGTGGCAGTGGG+CGG - Chr3:48507158-48507177 MsG0380013957.01.T01:CDS 55.0%
GGTGGCTCCGCGATTTCTTA+TGG - Chr3:48507558-48507577 MsG0380013957.01.T01:CDS 55.0%
TGGGTGGAATTGCCACAACG+TGG - Chr3:48507825-48507844 MsG0380013957.01.T01:CDS 55.0%
TTGGGGCGGTGGTGATTTAG+TGG - Chr3:48507148-48507167 MsG0380013957.01.T01:CDS 55.0%
!! AAGGCTCTAGGCTGAGTAGC+AGG + Chr3:48507761-48507780 None:intergenic 55.0%
!! AGCACCAGTTTGACTTGGGG+CGG - Chr3:48507134-48507153 MsG0380013957.01.T01:CDS 55.0%
!! CCTTGTGATGGACCTGGAAG+AGG - Chr3:48507344-48507363 MsG0380013957.01.T01:CDS 55.0%
!! TGGTGCTTGCTGTTGCACCA+GGG + Chr3:48507121-48507140 None:intergenic 55.0%
!! TGTGATGGACCTGGAAGAGG+GGG - Chr3:48507347-48507366 MsG0380013957.01.T01:CDS 55.0%
ACCACCGCCCCAAGTCAAAC+TGG + Chr3:48507141-48507160 None:intergenic 60.0%
CCGCGATTTCTTATGGGCGC+AGG - Chr3:48507565-48507584 MsG0380013957.01.T01:CDS 60.0%
! AGGGCGCCCTAAAGCACTCA+TGG + Chr3:48507006-48507025 None:intergenic 60.0%
!! ACCAGTTTGACTTGGGGCGG+TGG - Chr3:48507137-48507156 MsG0380013957.01.T01:CDS 60.0%
!! CGGTTCCCTTGTGATGGACC+TGG - Chr3:48507338-48507357 MsG0380013957.01.T01:CDS 60.0%
!! CTGGTGCTTGCTGTTGCACC+AGG + Chr3:48507122-48507141 None:intergenic 60.0%
!! GGTGCTTGCTGTTGCACCAG+GGG + Chr3:48507120-48507139 None:intergenic 60.0%
!! GTGATGGACCTGGAAGAGGG+GGG - Chr3:48507348-48507367 MsG0380013957.01.T01:CDS 60.0%
CTTATGGGCGCAGGCATCCC+AGG - Chr3:48507574-48507593 MsG0380013957.01.T01:CDS 65.0%
TGGCATGTCCCCCCTCTTCC+AGG + Chr3:48507359-48507378 None:intergenic 65.0%
GCACCAGGGGCCGTTGTACC+AGG + Chr3:48507107-48507126 None:intergenic 70.0%
GCACCTGGTACAACGGCCCC+TGG - Chr3:48507101-48507120 MsG0380013957.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 48506552 48507883 48506552 ID=MsG0380013957.01;Name=MsG0380013957.01
Chr3 mRNA 48506552 48507883 48506552 ID=MsG0380013957.01.T01;Parent=MsG0380013957.01;Name=MsG0380013957.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|443
Chr3 exon 48506552 48507883 48506552 ID=MsG0380013957.01.T01:exon:2082;Parent=MsG0380013957.01.T01
Chr3 CDS 48506552 48507883 48506552 ID=MsG0380013957.01.T01:cds;Parent=MsG0380013957.01.T01
Gene Sequence

>MsG0380013957.01.T01

ATGTATAGAACTAATTGGGGTATTGGTCATGGTATAAAAGATATTTTAGAGGCCCATAAAGGTCCATTTACAGGCCAAGGTCATAAAGGTCTATATGAGATCCTAACAACGTCATGGCATGCTCAATTATCTATTAACCTAGCTATGTTAGGCTCTTTGACCATTATTGTAGCTCACCATATGTATGCTATGCCTCCTTATCCATACCTAGCTACTGACTATGGGACACAACTGTCATTGTTCACACATCACATGTGGATTGGGGGATTTCTCATAGTTGGTGCTGCTGCACATGCAGCCATTTTTATGGTAAGAGACTATGATCCAACTACTCGATACAACGATCTATTAGATCGTATTCTTAGACATCGCGATGCAATCATATCACATCTCAACTGGGTGTGTATATTTTTAGGCTTTCACAGTTTTGGTTTGTATATTCATAATGATACCATGAGTGCTTTAGGGCGCCCTCAAGATATGTTTTCTGATACCGCTATACAATTACAACCTGTCTTTGCTCAATGGATACAAAATACCCACGCTTTAGCACCTGGTACAACGGCCCCTGGTGCAACAGCAAGCACCAGTTTGACTTGGGGCGGTGGTGATTTAGTGGCAGTGGGCGGCAAAGTAGCTTTGTTACCTATTCCATTAGGAACTGCAGATTTTTTGGTACATCATATTCATGCATTTACAATTCACGTGACGGTATTGATACTCCTAAAAGGAGTTCTATTTGCTCGTAGCTCACGATTGATACCGGATAAAGCAAATCTTGGTTTTCGGTTCCCTTGTGATGGACCTGGAAGAGGGGGGACATGCCAAGTATCCGCTTGGGATCACGTCTTCTTAGGATTATTTTGGATGTACAATTCAATTTCTGTAGTAATATTCCATTTCAGTTGGAAAATGCAGTCAGATGTTTGGGGTAGTATAAATGATCAAGGAGTAGTAACTCATATCACAGGAGGAAACTTTGCGCAGAGTTCGATTACCATTAATGGGTGGCTCCGCGATTTCTTATGGGCGCAGGCATCCCAGGTAATTCAGTCTTATGGTTCCTCATTATCTGCATATGGTCTTTTTTTCTTAGGTGCCCATTTTGTATGGGCTTTTAGTTTAATGTTTCTATTCAGCGGGCGTGGTTATTGGCAAGAACTTATTGAATCCATCGTTTGGGCTCATAATAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTGTACAGGGACGTGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAACGTGGGCATTCTTCTTAGCAAGAATTATTGCAGTAGGATAA

Protein sequence

>MsG0380013957.01.T01

MYRTNWGIGHGIKDILEAHKGPFTGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHMYAMPPYPYLATDYGTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPTTRYNDLLDRILRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWIQNTHALAPGTTAPGATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSINDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARIIAVG*