Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013951.01.T01 | YP_009027080.1 | 100 | 379 | 0 | 0 | 1 | 379 | 15 | 393 | 0 | 776 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013951.01.T01 | B5LMS0 | 98.681 | 379 | 5 | 0 | 1 | 379 | 15 | 393 | 0 | 772 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013951.01.T01 | A0A023HPE3 | 100.000 | 379 | 0 | 0 | 1 | 379 | 15 | 393 | 0.0 | 776 |
| MsG0380013951.01.T01 | A0A4P8F3V4 | 100.000 | 379 | 0 | 0 | 1 | 379 | 15 | 393 | 0.0 | 776 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047967.01 | MsG0380013951.01 | 0.816787 | 4.619183e-52 | 3.304480e-49 |
| MsG0080048302.01 | MsG0380013951.01 | -0.842858 | 1.999854e-58 | 3.072171e-55 |
| MsG0080048560.01 | MsG0380013951.01 | 0.817575 | 3.071134e-52 | 2.244904e-49 |
| MsG0080048690.01 | MsG0380013951.01 | 0.872586 | 2.837862e-67 | 1.194098e-63 |
| MsG0080048691.01 | MsG0380013951.01 | 0.826017 | 3.417393e-54 | 3.166787e-51 |
| MsG0080048692.01 | MsG0380013951.01 | 0.935614 | 6.427222e-97 | 5.229060e-92 |
| MsG0080048693.01 | MsG0380013951.01 | 0.871399 | 7.038042e-67 | 2.835237e-63 |
| MsG0080048694.01 | MsG0380013951.01 | 0.815720 | 7.998820e-52 | 5.557942e-49 |
| MsG0080048695.01 | MsG0380013951.01 | 0.814902 | 1.216245e-51 | 8.263237e-49 |
| MsG0080048697.01 | MsG0380013951.01 | 0.817603 | 3.026741e-52 | 2.214180e-49 |
| MsG0080048698.01 | MsG0380013951.01 | 0.933510 | 1.681265e-95 | 1.200599e-90 |
| MsG0080048699.01 | MsG0380013951.01 | 0.968193 | 2.492307e-128 | 2.031581e-122 |
| MsG0080048813.01 | MsG0380013951.01 | 0.812997 | 3.198556e-51 | 2.063930e-48 |
| MsG0080049076.01 | MsG0380013951.01 | 0.874174 | 8.301427e-68 | 3.700123e-64 |
| MsG0180000337.01 | MsG0380013951.01 | -0.812424 | 4.270295e-51 | 2.714252e-48 |
| MsG0180001072.01 | MsG0380013951.01 | 0.817303 | 3.536293e-52 | 2.565764e-49 |
| MsG0180001110.01 | MsG0380013951.01 | 0.800627 | 1.319058e-48 | 6.171344e-46 |
| MsG0180001925.01 | MsG0380013951.01 | 0.836019 | 1.195963e-56 | 1.488156e-53 |
| MsG0180002214.01 | MsG0380013951.01 | 0.822430 | 2.378420e-53 | 1.990400e-50 |
| MsG0180002226.01 | MsG0380013951.01 | 0.809150 | 2.181376e-50 | 1.270970e-47 |
| MsG0180002439.01 | MsG0380013951.01 | 0.823467 | 1.363672e-53 | 1.175088e-50 |
| MsG0180002546.01 | MsG0380013951.01 | 0.834924 | 2.261689e-56 | 2.723456e-53 |
| MsG0180004301.01 | MsG0380013951.01 | 0.819418 | 1.173916e-52 | 9.028467e-50 |
| MsG0180004435.01 | MsG0380013951.01 | 0.858026 | 1.092220e-62 | 2.749456e-59 |
| MsG0180004506.01 | MsG0380013951.01 | 0.822758 | 1.995905e-53 | 1.685950e-50 |
| MsG0180004761.01 | MsG0380013951.01 | 0.835321 | 1.796232e-56 | 2.189088e-53 |
| MsG0180005791.01 | MsG0380013951.01 | 0.823958 | 1.046190e-53 | 9.141872e-51 |
| MsG0280010695.01 | MsG0380013951.01 | 0.864059 | 1.596100e-64 | 4.944690e-61 |
| MsG0280010780.01 | MsG0380013951.01 | 0.802210 | 6.251026e-49 | 3.044223e-46 |
| MsG0280011035.01 | MsG0380013951.01 | 0.800217 | 1.598235e-48 | 7.400270e-46 |
| MsG0280011120.01 | MsG0380013951.01 | 0.810161 | 1.322810e-50 | 7.915783e-48 |
| MsG0380012366.01 | MsG0380013951.01 | -0.816888 | 4.384285e-52 | 3.145090e-49 |
| MsG0380013448.01 | MsG0380013951.01 | 0.894118 | 3.330041e-75 | 3.267309e-71 |
| MsG0380013888.01 | MsG0380013951.01 | 0.869830 | 2.306602e-66 | 8.778385e-63 |
| MsG0380013890.01 | MsG0380013951.01 | 0.815855 | 7.464935e-52 | 5.205612e-49 |
| MsG0380013892.01 | MsG0380013951.01 | 0.840842 | 6.813437e-58 | 9.828033e-55 |
| MsG0380013916.01 | MsG0380013951.01 | 0.875377 | 3.232003e-68 | 1.505533e-64 |
| MsG0380013917.01 | MsG0380013951.01 | 0.887457 | 1.403884e-72 | 1.044806e-68 |
| MsG0380013918.01 | MsG0380013951.01 | 0.805720 | 1.164884e-49 | 6.207991e-47 |
| MsG0380013920.01 | MsG0380013951.01 | 0.869240 | 3.591277e-66 | 1.338110e-62 |
| MsG0380013921.01 | MsG0380013951.01 | 0.825646 | 4.185065e-54 | 3.837267e-51 |
| MsG0380013923.01 | MsG0380013951.01 | 0.925166 | 2.650927e-90 | 1.166078e-85 |
| MsG0380013926.01 | MsG0380013951.01 | 0.908122 | 2.414124e-81 | 4.414881e-77 |
| MsG0380013928.01 | MsG0380013951.01 | 0.809036 | 2.307355e-50 | 1.340225e-47 |
| MsG0380013929.01 | MsG0380013951.01 | 0.921725 | 2.475106e-88 | 8.994254e-84 |
| MsG0380013931.01 | MsG0380013951.01 | 0.911171 | 8.220541e-83 | 1.739681e-78 |
| MsG0380013932.01 | MsG0380013951.01 | 0.834142 | 3.556641e-56 | 4.182861e-53 |
| MsG0380013940.01 | MsG0380013951.01 | 0.903855 | 2.251713e-79 | 3.393355e-75 |
| MsG0380013941.01 | MsG0380013951.01 | 0.925145 | 2.726780e-90 | 1.197352e-85 |
| MsG0380013942.01 | MsG0380013951.01 | 0.964608 | 1.530437e-123 | 9.231885e-118 |
| MsG0380013943.01 | MsG0380013951.01 | 0.907178 | 6.705987e-81 | 1.176008e-76 |
| MsG0380013944.01 | MsG0380013951.01 | 0.937779 | 1.988222e-98 | 1.838476e-93 |
| MsG0380013945.01 | MsG0380013951.01 | 0.906072 | 2.191357e-80 | 3.651782e-76 |
| MsG0380013946.01 | MsG0380013951.01 | 0.801476 | 8.845482e-49 | 4.228352e-46 |
| MsG0380013948.01 | MsG0380013951.01 | 0.863333 | 2.682826e-64 | 8.104203e-61 |
| MsG0380013951.01 | MsG0380013952.01 | 0.917782 | 3.489849e-86 | 1.026166e-81 |
| MsG0380013951.01 | MsG0380013953.01 | 0.902814 | 6.595600e-79 | 9.506573e-75 |
| MsG0380013951.01 | MsG0380013954.01 | 0.838520 | 2.738512e-57 | 3.677143e-54 |
| MsG0380013951.01 | MsG0380013956.01 | 0.846601 | 1.960913e-59 | 3.393043e-56 |
| MsG0380013951.01 | MsG0380013957.01 | 0.903412 | 3.562778e-79 | 5.268700e-75 |
| MsG0380013951.01 | MsG0380013959.01 | 0.804284 | 2.325608e-49 | 1.194350e-46 |
| MsG0380013951.01 | MsG0380013961.01 | 0.860758 | 1.651528e-63 | 4.564782e-60 |
| MsG0380013951.01 | MsG0380013962.01 | 0.875624 | 2.661186e-68 | 1.251278e-64 |
| MsG0380013951.01 | MsG0380013966.01 | 0.946808 | 2.272621e-105 | 3.808209e-100 |
| MsG0380013951.01 | MsG0380013967.01 | 0.903749 | 2.515308e-79 | 3.774030e-75 |
| MsG0380013951.01 | MsG0380013968.01 | 0.998534 | 5.753980e-268 | 1.700745e-260 |
| MsG0380013951.01 | MsG0380013969.01 | 0.918036 | 2.556364e-86 | 7.620638e-82 |
| MsG0380013951.01 | MsG0380013971.01 | 0.881255 | 2.794963e-70 | 1.625720e-66 |
| MsG0380013951.01 | MsG0380013972.01 | 0.922437 | 9.849858e-89 | 3.724054e-84 |
| MsG0380013951.01 | MsG0380013975.01 | 0.841771 | 3.882885e-58 | 5.764702e-55 |
| MsG0380013951.01 | MsG0380013977.01 | 0.903900 | 2.150206e-79 | 3.244987e-75 |
| MsG0380013951.01 | MsG0380013981.01 | 0.876946 | 9.315582e-69 | 4.601292e-65 |
| MsG0380013951.01 | MsG0380013986.01 | 0.803539 | 3.322590e-49 | 1.674084e-46 |
| MsG0380013951.01 | MsG0380013995.01 | 0.877726 | 4.988197e-69 | 2.535146e-65 |
| MsG0380013951.01 | MsG0380013997.01 | 0.805971 | 1.031841e-49 | 5.534313e-47 |
| MsG0380013951.01 | MsG0380013999.01 | 0.835389 | 1.726332e-56 | 2.108069e-53 |
| MsG0380013951.01 | MsG0380014004.01 | 0.838335 | 3.056471e-57 | 4.080863e-54 |
| MsG0380013951.01 | MsG0380014005.01 | 0.904608 | 1.026993e-79 | 1.600959e-75 |
| MsG0380013951.01 | MsG0380014006.01 | 0.905324 | 4.840947e-80 | 7.788817e-76 |
| MsG0380013951.01 | MsG0380014008.01 | 0.911254 | 7.491182e-83 | 1.590876e-78 |
| MsG0380013951.01 | MsG0380014017.01 | 0.846104 | 2.678862e-59 | 4.561028e-56 |
| MsG0380013951.01 | MsG0380014018.01 | 0.953915 | 9.542632e-112 | 2.593900e-106 |
| MsG0380013951.01 | MsG0380014020.01 | 0.864722 | 9.907021e-65 | 3.141839e-61 |
| MsG0380013951.01 | MsG0380014021.01 | 0.845403 | 4.151455e-59 | 6.910359e-56 |
| MsG0380013951.01 | MsG0380014023.01 | 0.926483 | 4.410502e-91 | 2.085830e-86 |
| MsG0380013951.01 | MsG0380014026.01 | 0.929234 | 9.309246e-93 | 5.140255e-88 |
| MsG0380013951.01 | MsG0380014029.01 | 0.806144 | 9.485115e-50 | 5.109895e-47 |
| MsG0380013951.01 | MsG0380014032.01 | 0.909731 | 4.117557e-82 | 8.123596e-78 |
| MsG0380013951.01 | MsG0380014033.01 | 0.931899 | 1.906976e-94 | 1.240944e-89 |
| MsG0380013951.01 | MsG0380014034.01 | 0.827459 | 1.546077e-54 | 1.493587e-51 |
| MsG0380013951.01 | MsG0380014036.01 | 0.845054 | 5.159686e-59 | 8.493871e-56 |
| MsG0380013951.01 | MsG0380014039.01 | 0.954173 | 5.357503e-112 | 1.482368e-106 |
| MsG0380013951.01 | MsG0380014040.01 | 0.930575 | 1.340782e-93 | 8.028717e-89 |
| MsG0380013951.01 | MsG0380014044.01 | 0.822155 | 2.756180e-53 | 2.288233e-50 |
| MsG0380013951.01 | MsG0380014051.01 | 0.939569 | 1.020075e-99 | 1.058256e-94 |
| MsG0380013951.01 | MsG0380014054.01 | 0.805550 | 1.264471e-49 | 6.708818e-47 |
| MsG0380013951.01 | MsG0380014057.01 | 0.893230 | 7.630350e-75 | 7.209720e-71 |
| MsG0380013951.01 | MsG0380015348.01 | 0.810666 | 1.029141e-50 | 6.241578e-48 |
| MsG0380013951.01 | MsG0380015697.01 | 0.820947 | 5.240198e-53 | 4.205607e-50 |
| MsG0380013951.01 | MsG0380017007.01 | 0.980818 | 4.169405e-151 | 1.015941e-144 |
| MsG0380013951.01 | MsG0480018296.01 | 0.923276 | 3.286137e-89 | 1.302400e-84 |
| MsG0380013951.01 | MsG0480019975.01 | 0.801319 | 9.521858e-49 | 4.533728e-46 |
| MsG0380013951.01 | MsG0480020052.01 | 0.879052 | 1.706848e-69 | 9.120054e-66 |
| MsG0380013951.01 | MsG0480021327.01 | 0.807964 | 3.907324e-50 | 2.206355e-47 |
| MsG0380013951.01 | MsG0480021331.01 | 0.826743 | 2.294623e-54 | 2.170643e-51 |
| MsG0380013951.01 | MsG0480021476.01 | 0.846014 | 2.833977e-59 | 4.811667e-56 |
| MsG0380013951.01 | MsG0480021912.01 | 0.804175 | 2.451028e-49 | 1.255220e-46 |
| MsG0380013951.01 | MsG0480022125.01 | -0.841211 | 5.452308e-58 | 7.954156e-55 |
| MsG0380013951.01 | MsG0480022508.01 | -0.813930 | 1.994968e-51 | 1.320232e-48 |
| MsG0380013951.01 | MsG0480022591.01 | 0.808788 | 2.607356e-50 | 1.504444e-47 |
| MsG0380013951.01 | MsG0480023810.01 | -0.844215 | 8.677122e-59 | 1.391153e-55 |
| MsG0380013951.01 | MsG0580024570.01 | 0.872255 | 3.661142e-67 | 1.521639e-63 |
| MsG0380013951.01 | MsG0580025572.01 | -0.800389 | 1.474628e-48 | 6.857829e-46 |
| MsG0380013951.01 | MsG0580027677.01 | 0.891174 | 5.052624e-74 | 4.381154e-70 |
| MsG0380013951.01 | MsG0580028051.01 | -0.811712 | 6.102229e-51 | 3.804652e-48 |
| MsG0380013951.01 | MsG0580029583.01 | -0.850868 | 1.285243e-60 | 2.553230e-57 |
| MsG0380013951.01 | MsG0680030439.01 | 0.803830 | 2.890445e-49 | 1.467249e-46 |
| MsG0380013951.01 | MsG0680035741.01 | -0.800340 | 1.509127e-48 | 7.009729e-46 |
| MsG0380013951.01 | MsG0780035951.01 | 0.848311 | 6.645408e-60 | 1.214539e-56 |
| MsG0380013951.01 | MsG0780038197.01 | 0.874546 | 6.206000e-68 | 2.804577e-64 |
| MsG0380013951.01 | MsG0780039190.01 | -0.812010 | 5.256014e-51 | 3.303379e-48 |
| MsG0380013951.01 | MsG0780040060.01 | -0.843629 | 1.246035e-58 | 1.961531e-55 |
| MsG0380013951.01 | MsG0780040316.01 | 0.820505 | 6.621451e-53 | 5.248763e-50 |
| MsG0380013951.01 | MsG0780040440.01 | -0.822996 | 1.756522e-53 | 1.493727e-50 |
| MsG0380013951.01 | MsG0780040480.01 | -0.841648 | 4.184335e-58 | 6.188356e-55 |
| MsG0380013951.01 | MsG0880042291.01 | 0.818667 | 1.739079e-52 | 1.309973e-49 |
| MsG0380013951.01 | MsG0880042368.01 | -0.815176 | 1.057159e-51 | 7.235854e-49 |
| MsG0380013951.01 | MsG0880043246.01 | -0.822835 | 1.915499e-53 | 1.621518e-50 |
| MsG0380013951.01 | MsG0880043824.01 | -0.819174 | 1.333720e-52 | 1.018817e-49 |
| MsG0380013951.01 | MsG0880045097.01 | 0.820812 | 5.626612e-53 | 4.498629e-50 |
| MsG0380013951.01 | MsG0880045630.01 | 0.880370 | 5.805768e-70 | 3.262754e-66 |
| MsG0380013951.01 | MsG0880045861.01 | -0.820835 | 5.560757e-53 | 4.448879e-50 |
| MsG0380013951.01 | MsG0880046099.01 | 0.831463 | 1.645534e-55 | 1.787068e-52 |
| MsG0380013951.01 | MsG0880047081.01 | -0.816492 | 5.377401e-52 | 3.815793e-49 |
| MsG0280006475.01 | MsG0380013951.01 | 0.856579 | 2.923847e-62 | 7.012045e-59 |
| MsG0280006704.01 | MsG0380013951.01 | -0.840395 | 8.925452e-58 | 1.269705e-54 |
| MsG0280007759.01 | MsG0380013951.01 | -0.811863 | 5.659117e-51 | 3.542563e-48 |
| MsG0280007760.01 | MsG0380013951.01 | -0.810147 | 1.331827e-50 | 7.966887e-48 |
| MsG0280009971.01 | MsG0380013951.01 | -0.899980 | 1.157232e-77 | 1.465270e-73 |
| MsG0280010137.01 | MsG0380013951.01 | 0.829241 | 5.748189e-55 | 5.849659e-52 |
| MsG0280010140.01 | MsG0380013951.01 | 0.822347 | 2.486577e-53 | 2.075975e-50 |
| MsG0280010145.01 | MsG0380013951.01 | 0.962062 | 1.968111e-120 | 9.563803e-115 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013951.01.T01 | MTR_4g006100 | 98.925 | 372 | 4 | 0 | 1 | 372 | 15 | 386 | 0.0 | 763 |
| MsG0380013951.01.T01 | MTR_6g042200 | 98.387 | 372 | 6 | 0 | 1 | 372 | 15 | 386 | 0.0 | 759 |
| MsG0380013951.01.T01 | MTR_0002s0150 | 84.227 | 317 | 50 | 0 | 56 | 372 | 101 | 417 | 0.0 | 572 |
| MsG0380013951.01.T01 | MTR_2g451380 | 73.934 | 211 | 4 | 1 | 1 | 211 | 15 | 174 | 7.35e-100 | 293 |
| MsG0380013951.01.T01 | MTR_7g021700 | 100.000 | 83 | 0 | 0 | 1 | 83 | 15 | 97 | 4.07e-50 | 178 |
| MsG0380013951.01.T01 | MTR_1g099540 | 89.041 | 73 | 8 | 0 | 114 | 186 | 3 | 75 | 5.46e-42 | 142 |
| MsG0380013951.01.T01 | MTR_4g117480 | 94.286 | 70 | 4 | 0 | 1 | 70 | 1 | 70 | 2.71e-41 | 142 |
| MsG0380013951.01.T01 | MTR_8g035600 | 90.909 | 66 | 6 | 0 | 184 | 249 | 33 | 98 | 8.30e-37 | 129 |
| MsG0380013951.01.T01 | MTR_6g011030 | 80.000 | 40 | 7 | 1 | 140 | 179 | 45 | 83 | 1.37e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013951.01.T01 | ATCG01110 | 90.237 | 379 | 37 | 0 | 1 | 379 | 15 | 393 | 0.0 | 718 |
| MsG0380013951.01.T01 | ATMG00510 | 40.000 | 385 | 218 | 3 | 2 | 379 | 16 | 394 | 4.18e-94 | 287 |
Find 72 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAGTTAAAAGAATGAAAT+TGG | 0.240964 | 3:+48499180 | MsG0380013951.01.T01:CDS |
| GGAGAGAAGAAGTTATAAAT+TGG | 0.256563 | 3:+48498708 | MsG0380013951.01.T01:CDS |
| TATTGATTGTGAACCAATAT+TGG | 0.291835 | 3:+48498190 | MsG0380013951.01.T01:CDS |
| TAAAATTATTCAACAGGCTT+TGG | 0.308807 | 3:+48498895 | MsG0380013951.01.T01:CDS |
| ACAGAAGCAATAACCGTAAA+TGG | 0.315370 | 3:+48498311 | MsG0380013951.01.T01:CDS |
| CAATTGTTCCGGTCCATTTA+CGG | 0.318728 | 3:-48498324 | None:intergenic |
| CGTAAATGGACCGGAACAAT+TGG | 0.319748 | 3:+48498325 | MsG0380013951.01.T01:CDS |
| TCTCACATAAAGTTCTTGTT+TGG | 0.322955 | 3:-48499044 | None:intergenic |
| GGTTATCAGGACCGATGCTT+CGG | 0.326389 | 3:+48498732 | MsG0380013951.01.T01:CDS |
| ATCCATTAAAATTATTCAAC+AGG | 0.326815 | 3:+48498889 | MsG0380013951.01.T01:CDS |
| TATTCAAAATCATTCCATTC+TGG | 0.326932 | 3:-48498980 | None:intergenic |
| GGACCGATGCTTCGGGCTTC+CGG | 0.333395 | 3:+48498740 | MsG0380013951.01.T01:CDS |
| CTGTGTAAATAACCCAATAT+TGG | 0.346800 | 3:-48498203 | None:intergenic |
| GAGAGAAGAAGTTATAAATT+GGG | 0.349483 | 3:+48498709 | MsG0380013951.01.T01:CDS |
| AGGTAGCATAGATATCATTA+TGG | 0.351209 | 3:+48499222 | MsG0380013951.01.T01:CDS |
| CAGGCTTTGGAAGGAATTCC+AGG | 0.354309 | 3:+48498908 | MsG0380013951.01.T01:CDS |
| TGAATATTTCCCAATTGTTC+CGG | 0.368041 | 3:-48498335 | None:intergenic |
| GCACCAATATCTGCCATAAA+AGG | 0.383520 | 3:-48498437 | None:intergenic |
| ATTGATTGTGAACCAATATT+GGG | 0.384432 | 3:+48498191 | MsG0380013951.01.T01:CDS |
| GTTATCAGGACCGATGCTTC+GGG | 0.385864 | 3:+48498733 | MsG0380013951.01.T01:CDS |
| GCTCGTTATTTAGTTCGAAT+TGG | 0.386457 | 3:+48498854 | MsG0380013951.01.T01:CDS |
| ACGTAGATCCCATTGTATTC+CGG | 0.396087 | 3:-48498759 | None:intergenic |
| CTCACATAAAGTTCTTGTTT+GGG | 0.400339 | 3:-48499043 | None:intergenic |
| CGAAGAACACCATGCATTGA+TGG | 0.409727 | 3:-48498137 | None:intergenic |
| GCAGATATTGTATAATTGTT+CGG | 0.421110 | 3:-48498250 | None:intergenic |
| AGCTTCTCATCTACTATGGC+TGG | 0.422896 | 3:+48498412 | MsG0380013951.01.T01:CDS |
| GTTGAAGGCGTAGGTGTTGT+TGG | 0.429176 | 3:+48498686 | MsG0380013951.01.T01:CDS |
| CGACTTATTGTTACTCTGGA+TGG | 0.439520 | 3:+48498158 | MsG0380013951.01.T01:CDS |
| GCATAGCTTCTCATCTACTA+TGG | 0.439604 | 3:+48498408 | MsG0380013951.01.T01:CDS |
| GTAGCGGCTGATCTACCTTA+TGG | 0.440758 | 3:+48498566 | MsG0380013951.01.T01:CDS |
| AGTTCGAATTGGTGAAATGA+TGG | 0.442828 | 3:+48498865 | MsG0380013951.01.T01:CDS |
| AATTTGATTGGGAAGTTCAA+TGG | 0.448549 | 3:+48498810 | MsG0380013951.01.T01:CDS |
| AGTGTTACGAGGAATTTGAT+TGG | 0.450881 | 3:+48498798 | MsG0380013951.01.T01:CDS |
| GGTAGCATAGATATCATTAT+GGG | 0.462662 | 3:+48499223 | MsG0380013951.01.T01:CDS |
| TCTTCGACTTATTGTTACTC+TGG | 0.475804 | 3:+48498154 | MsG0380013951.01.T01:CDS |
| TTGAAGGCGTAGGTGTTGTT+GGG | 0.476016 | 3:+48498687 | MsG0380013951.01.T01:CDS |
| CATAATTACTCGTATATAGC+TGG | 0.480165 | 3:-48498372 | None:intergenic |
| TCGCTCCTTTGATAGAGAAA+AGG | 0.480513 | 3:+48498955 | MsG0380013951.01.T01:CDS |
| TAATCCCAACGTGTTACATA+AGG | 0.485650 | 3:-48498272 | None:intergenic |
| GTGTTACGAGGAATTTGATT+GGG | 0.487456 | 3:+48498799 | MsG0380013951.01.T01:CDS |
| AGAGAAGAAGTTATAAATTG+GGG | 0.491460 | 3:+48498710 | MsG0380013951.01.T01:CDS |
| GGGTTATTTACACAGAGGTA+TGG | 0.494293 | 3:+48498211 | MsG0380013951.01.T01:CDS |
| TCTGCCTTATGTAACACGTT+GGG | 0.505724 | 3:+48498268 | MsG0380013951.01.T01:CDS |
| TCGGGCTTCCGGAATACAAT+GGG | 0.512104 | 3:+48498751 | MsG0380013951.01.T01:CDS |
| GCTGATATTATGACAATACT+AGG | 0.522631 | 3:+48499202 | MsG0380013951.01.T01:CDS |
| GTAAATGGACCGGAACAATT+GGG | 0.525773 | 3:+48498326 | MsG0380013951.01.T01:CDS |
| ATAGAGAAAAGGAGCCAGAA+TGG | 0.528576 | 3:+48498966 | MsG0380013951.01.T01:CDS |
| AGATGGAAAATTCGTCCACC+TGG | 0.529045 | 3:+48499130 | MsG0380013951.01.T01:CDS |
| CATTTATCTATCCAACCATA+AGG | 0.536061 | 3:-48498581 | None:intergenic |
| GATCTATTTGAAGCTGCGAC+AGG | 0.538812 | 3:+48498506 | MsG0380013951.01.T01:CDS |
| ATTATTCAACAGGCTTTGGA+AGG | 0.539344 | 3:+48498899 | MsG0380013951.01.T01:CDS |
| CGGCTGATCTACCTTATGGT+TGG | 0.543311 | 3:+48498570 | MsG0380013951.01.T01:CDS |
| AGCAATAACCGTAAATGGAC+CGG | 0.546967 | 3:+48498316 | MsG0380013951.01.T01:CDS |
| TGTTTGGGCAATTCAAAAGT+CGG | 0.557531 | 3:-48499028 | None:intergenic |
| TTTCTAATAGGAGATCAGAA+TGG | 0.560048 | 3:+48499097 | MsG0380013951.01.T01:CDS |
| TTAGAACGAGTTGAAGGCGT+AGG | 0.570320 | 3:+48498677 | MsG0380013951.01.T01:CDS |
| ATTTGCAAATTGATAAAACC+AGG | 0.570420 | 3:-48499148 | None:intergenic |
| GAAGAACACCATGCATTGAT+GGG | 0.574286 | 3:-48498136 | None:intergenic |
| ATCTGCCTTATGTAACACGT+TGG | 0.575287 | 3:+48498267 | MsG0380013951.01.T01:CDS |
| ATTCCGGAAGCCCGAAGCAT+CGG | 0.578734 | 3:-48498743 | None:intergenic |
| CTATATACGAGTAATTATGT+TGG | 0.584312 | 3:+48498376 | MsG0380013951.01.T01:CDS |
| GCTTCTCATCTACTATGGCT+GGG | 0.589546 | 3:+48498413 | MsG0380013951.01.T01:CDS |
| TTCGGGCTTCCGGAATACAA+TGG | 0.596428 | 3:+48498750 | MsG0380013951.01.T01:CDS |
| CCATGCATTGATGGGTGTTG+AGG | 0.621910 | 3:-48498128 | None:intergenic |
| CCTCAACACCCATCAATGCA+TGG | 0.624983 | 3:+48498128 | MsG0380013951.01.T01:CDS |
| AGAACTTTATGTGAGAGTTG+AGG | 0.641734 | 3:+48499051 | MsG0380013951.01.T01:CDS |
| GAGAAGAAGTTATAAATTGG+GGG | 0.651461 | 3:+48498711 | MsG0380013951.01.T01:CDS |
| CTTTGGAAGGAATTCCAGGT+GGG | 0.666113 | 3:+48498912 | MsG0380013951.01.T01:CDS |
| TGCAAATTGATAAAACCAGG+TGG | 0.677686 | 3:-48499145 | None:intergenic |
| CGATAATTATGAGTGTTACG+AGG | 0.689833 | 3:+48498787 | MsG0380013951.01.T01:CDS |
| GCTTTGGAAGGAATTCCAGG+TGG | 0.694925 | 3:+48498911 | MsG0380013951.01.T01:CDS |
| ATATTGGGTTATTTACACAG+AGG | 0.748960 | 3:+48498206 | MsG0380013951.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAGTTAAAAGAATGAAAT+TGG | + | Chr3:48499180-48499199 | MsG0380013951.01.T01:CDS | 15.0% |
| !!! | TCTCTAAAAATATAGAAAAA+GGG | - | Chr3:48498470-48498489 | None:intergenic | 15.0% |
| !!! | TTCTCTAAAAATATAGAAAA+AGG | - | Chr3:48498471-48498490 | None:intergenic | 15.0% |
| !!! | TTGCAATTATTTTTTAACAA+GGG | + | Chr3:48498613-48498632 | MsG0380013951.01.T01:CDS | 15.0% |
| !!! | TTTGCAATTATTTTTTAACA+AGG | + | Chr3:48498612-48498631 | MsG0380013951.01.T01:CDS | 15.0% |
| !! | ATCCATTAAAATTATTCAAC+AGG | + | Chr3:48498889-48498908 | MsG0380013951.01.T01:CDS | 20.0% |
| !! | TCTAAAAATATAGAAAAAGG+GGG | - | Chr3:48498468-48498487 | None:intergenic | 20.0% |
| !!! | ATGCATAATTATTTTCGTAT+TGG | + | Chr3:48498539-48498558 | MsG0380013951.01.T01:CDS | 20.0% |
| !!! | CGAATTTCTAAATTTTCATA+TGG | - | Chr3:48498938-48498957 | None:intergenic | 20.0% |
| !!! | CTCTAAAAATATAGAAAAAG+GGG | - | Chr3:48498469-48498488 | None:intergenic | 20.0% |
| !!! | GAATTAGGAATTTTTCTAAT+AGG | + | Chr3:48499085-48499104 | MsG0380013951.01.T01:CDS | 20.0% |
| !!! | TTCATTCTTTTAACTAATTG+AGG | - | Chr3:48499178-48499197 | None:intergenic | 20.0% |
| ! | AGAGAAGAAGTTATAAATTG+GGG | + | Chr3:48498710-48498729 | MsG0380013951.01.T01:CDS | 25.0% |
| ! | ATTGATTGTGAACCAATATT+GGG | + | Chr3:48498191-48498210 | MsG0380013951.01.T01:CDS | 25.0% |
| ! | ATTTGCAAATTGATAAAACC+AGG | - | Chr3:48499151-48499170 | None:intergenic | 25.0% |
| ! | CTATATACGAGTAATTATGT+TGG | + | Chr3:48498376-48498395 | MsG0380013951.01.T01:CDS | 25.0% |
| ! | GAGAGAAGAAGTTATAAATT+GGG | + | Chr3:48498709-48498728 | MsG0380013951.01.T01:CDS | 25.0% |
| ! | GCAGATATTGTATAATTGTT+CGG | - | Chr3:48498253-48498272 | None:intergenic | 25.0% |
| ! | TAAAATTATTCAACAGGCTT+TGG | + | Chr3:48498895-48498914 | MsG0380013951.01.T01:CDS | 25.0% |
| ! | TATTCAAAATCATTCCATTC+TGG | - | Chr3:48498983-48499002 | None:intergenic | 25.0% |
| !! | AGCCTGTTGAATAATTTTAA+TGG | - | Chr3:48498894-48498913 | None:intergenic | 25.0% |
| !! | CATAATTATTTTCGTATTGG+AGG | + | Chr3:48498542-48498561 | MsG0380013951.01.T01:CDS | 25.0% |
| !! | TATTGATTGTGAACCAATAT+TGG | + | Chr3:48498190-48498209 | MsG0380013951.01.T01:CDS | 25.0% |
| !!! | ATTTTTTTAGAACGAGTTGA+AGG | + | Chr3:48498671-48498690 | MsG0380013951.01.T01:CDS | 25.0% |
| !!! | GATTTTGAATATCGATTCAT+TGG | + | Chr3:48498992-48499011 | MsG0380013951.01.T01:CDS | 25.0% |
| !!! | TCAACTCGTTCTAAAAAAAT+TGG | - | Chr3:48498671-48498690 | None:intergenic | 25.0% |
| AATTTGATTGGGAAGTTCAA+TGG | + | Chr3:48498810-48498829 | MsG0380013951.01.T01:CDS | 30.0% | |
| AGGTAGCATAGATATCATTA+TGG | + | Chr3:48499222-48499241 | MsG0380013951.01.T01:CDS | 30.0% | |
| ATATTGGGTTATTTACACAG+AGG | + | Chr3:48498206-48498225 | MsG0380013951.01.T01:CDS | 30.0% | |
| CATAATTACTCGTATATAGC+TGG | - | Chr3:48498375-48498394 | None:intergenic | 30.0% | |
| CATTTATCTATCCAACCATA+AGG | - | Chr3:48498584-48498603 | None:intergenic | 30.0% | |
| CTGTGTAAATAACCCAATAT+TGG | - | Chr3:48498206-48498225 | None:intergenic | 30.0% | |
| GAGAAGAAGTTATAAATTGG+GGG | + | Chr3:48498711-48498730 | MsG0380013951.01.T01:CDS | 30.0% | |
| GCTGATATTATGACAATACT+AGG | + | Chr3:48499202-48499221 | MsG0380013951.01.T01:CDS | 30.0% | |
| GGAGAGAAGAAGTTATAAAT+TGG | + | Chr3:48498708-48498727 | MsG0380013951.01.T01:CDS | 30.0% | |
| GGTAGCATAGATATCATTAT+GGG | + | Chr3:48499223-48499242 | MsG0380013951.01.T01:CDS | 30.0% | |
| TCTCACATAAAGTTCTTGTT+TGG | - | Chr3:48499047-48499066 | None:intergenic | 30.0% | |
| TGAATATTTCCCAATTGTTC+CGG | - | Chr3:48498338-48498357 | None:intergenic | 30.0% | |
| TTTCTAATAGGAGATCAGAA+TGG | + | Chr3:48499097-48499116 | MsG0380013951.01.T01:CDS | 30.0% | |
| ! | CTCACATAAAGTTCTTGTTT+GGG | - | Chr3:48499046-48499065 | None:intergenic | 30.0% |
| AAAAATTCCTAATTCCCCCT+TGG | - | Chr3:48499080-48499099 | None:intergenic | 35.0% | |
| AAAATTCCTAATTCCCCCTT+GGG | - | Chr3:48499079-48499098 | None:intergenic | 35.0% | |
| ACAGAAGCAATAACCGTAAA+TGG | + | Chr3:48498311-48498330 | MsG0380013951.01.T01:CDS | 35.0% | |
| AGAACTTTATGTGAGAGTTG+AGG | + | Chr3:48499051-48499070 | MsG0380013951.01.T01:CDS | 35.0% | |
| AGTGTTACGAGGAATTTGAT+TGG | + | Chr3:48498798-48498817 | MsG0380013951.01.T01:CDS | 35.0% | |
| AGTTCGAATTGGTGAAATGA+TGG | + | Chr3:48498865-48498884 | MsG0380013951.01.T01:CDS | 35.0% | |
| CGATAATTATGAGTGTTACG+AGG | + | Chr3:48498787-48498806 | MsG0380013951.01.T01:CDS | 35.0% | |
| GAAGTTCAATGGCAAAAAGA+AGG | + | Chr3:48498821-48498840 | MsG0380013951.01.T01:CDS | 35.0% | |
| GTGTTACGAGGAATTTGATT+GGG | + | Chr3:48498799-48498818 | MsG0380013951.01.T01:CDS | 35.0% | |
| GTTATAAATTGGGGGTTATC+AGG | + | Chr3:48498719-48498738 | MsG0380013951.01.T01:CDS | 35.0% | |
| TAATCCCAACGTGTTACATA+AGG | - | Chr3:48498275-48498294 | None:intergenic | 35.0% | |
| TCTTCGACTTATTGTTACTC+TGG | + | Chr3:48498154-48498173 | MsG0380013951.01.T01:CDS | 35.0% | |
| TGCAAATTGATAAAACCAGG+TGG | - | Chr3:48499148-48499167 | None:intergenic | 35.0% | |
| TGTTTGGGCAATTCAAAAGT+CGG | - | Chr3:48499031-48499050 | None:intergenic | 35.0% | |
| ! | CAGAGGTATGGAAAAAATTG+CGG | + | Chr3:48498223-48498242 | MsG0380013951.01.T01:CDS | 35.0% |
| ! | GCTCGTTATTTAGTTCGAAT+TGG | + | Chr3:48498854-48498873 | MsG0380013951.01.T01:CDS | 35.0% |
| !! | ATTATTCAACAGGCTTTGGA+AGG | + | Chr3:48498899-48498918 | MsG0380013951.01.T01:CDS | 35.0% |
| AAATTCCTAATTCCCCCTTG+GGG | - | Chr3:48499078-48499097 | None:intergenic | 40.0% | |
| ACGTAGATCCCATTGTATTC+CGG | - | Chr3:48498762-48498781 | None:intergenic | 40.0% | |
| AGCAATAACCGTAAATGGAC+CGG | + | Chr3:48498316-48498335 | MsG0380013951.01.T01:CDS | 40.0% | |
| ATAGAGAAAAGGAGCCAGAA+TGG | + | Chr3:48498966-48498985 | MsG0380013951.01.T01:CDS | 40.0% | |
| ATCTGCCTTATGTAACACGT+TGG | + | Chr3:48498267-48498286 | MsG0380013951.01.T01:CDS | 40.0% | |
| CAATTGTTCCGGTCCATTTA+CGG | - | Chr3:48498327-48498346 | None:intergenic | 40.0% | |
| CGACTTATTGTTACTCTGGA+TGG | + | Chr3:48498158-48498177 | MsG0380013951.01.T01:CDS | 40.0% | |
| GCACCAATATCTGCCATAAA+AGG | - | Chr3:48498440-48498459 | None:intergenic | 40.0% | |
| GCATAGCTTCTCATCTACTA+TGG | + | Chr3:48498408-48498427 | MsG0380013951.01.T01:CDS | 40.0% | |
| GGGTTATTTACACAGAGGTA+TGG | + | Chr3:48498211-48498230 | MsG0380013951.01.T01:CDS | 40.0% | |
| GTAAATGGACCGGAACAATT+GGG | + | Chr3:48498326-48498345 | MsG0380013951.01.T01:CDS | 40.0% | |
| TCGCTCCTTTGATAGAGAAA+AGG | + | Chr3:48498955-48498974 | MsG0380013951.01.T01:CDS | 40.0% | |
| TCTGCCTTATGTAACACGTT+GGG | + | Chr3:48498268-48498287 | MsG0380013951.01.T01:CDS | 40.0% | |
| ! | AAATTTTCATATGGCCCACC+TGG | - | Chr3:48498929-48498948 | None:intergenic | 40.0% |
| ! | AGAATGGTTTTCCTTGGAGA+TGG | + | Chr3:48499113-48499132 | MsG0380013951.01.T01:CDS | 40.0% |
| ! | GAAGAACACCATGCATTGAT+GGG | - | Chr3:48498139-48498158 | None:intergenic | 40.0% |
| ! | GAGATCAGAATGGTTTTCCT+TGG | + | Chr3:48499107-48499126 | MsG0380013951.01.T01:CDS | 40.0% |
| ! | GGACCTTTTATGGCAGATAT+TGG | + | Chr3:48498434-48498453 | MsG0380013951.01.T01:CDS | 40.0% |
| ! | TGGCTCCTTTTCTCTATCAA+AGG | - | Chr3:48498963-48498982 | None:intergenic | 40.0% |
| ! | TTTTCGTATTGGAGGAGTAG+CGG | + | Chr3:48498550-48498569 | MsG0380013951.01.T01:CDS | 40.0% |
| !! | CGTATATAGCTGGCTCTTTT+AGG | - | Chr3:48498365-48498384 | None:intergenic | 40.0% |
| AATTCCTAATTCCCCCTTGG+GGG | - | Chr3:48499077-48499096 | None:intergenic | 45.0% | |
| AGATGGAAAATTCGTCCACC+TGG | + | Chr3:48499130-48499149 | MsG0380013951.01.T01:CDS | 45.0% | |
| AGCTTCTCATCTACTATGGC+TGG | + | Chr3:48498412-48498431 | MsG0380013951.01.T01:CDS | 45.0% | |
| CGAAGAACACCATGCATTGA+TGG | - | Chr3:48498140-48498159 | None:intergenic | 45.0% | |
| CGTAAATGGACCGGAACAAT+TGG | + | Chr3:48498325-48498344 | MsG0380013951.01.T01:CDS | 45.0% | |
| GCTTCTCATCTACTATGGCT+GGG | + | Chr3:48498413-48498432 | MsG0380013951.01.T01:CDS | 45.0% | |
| ! | ACTATGGCTGGGACCTTTTA+TGG | + | Chr3:48498424-48498443 | MsG0380013951.01.T01:CDS | 45.0% |
| ! | CTTTGGAAGGAATTCCAGGT+GGG | + | Chr3:48498912-48498931 | MsG0380013951.01.T01:CDS | 45.0% |
| ! | GATCTATTTGAAGCTGCGAC+AGG | + | Chr3:48498506-48498525 | MsG0380013951.01.T01:CDS | 45.0% |
| ! | GGACGAATTTTCCATCTCCA+AGG | - | Chr3:48499127-48499146 | None:intergenic | 45.0% |
| ! | TTAGAACGAGTTGAAGGCGT+AGG | + | Chr3:48498677-48498696 | MsG0380013951.01.T01:CDS | 45.0% |
| !! | TTGAAGGCGTAGGTGTTGTT+GGG | + | Chr3:48498687-48498706 | MsG0380013951.01.T01:CDS | 45.0% |
| CCTCAACACCCATCAATGCA+TGG | + | Chr3:48498128-48498147 | MsG0380013951.01.T01:CDS | 50.0% | |
| CGGCTGATCTACCTTATGGT+TGG | + | Chr3:48498570-48498589 | MsG0380013951.01.T01:CDS | 50.0% | |
| GGTTATCAGGACCGATGCTT+CGG | + | Chr3:48498732-48498751 | MsG0380013951.01.T01:CDS | 50.0% | |
| GTAGCGGCTGATCTACCTTA+TGG | + | Chr3:48498566-48498585 | MsG0380013951.01.T01:CDS | 50.0% | |
| GTTATCAGGACCGATGCTTC+GGG | + | Chr3:48498733-48498752 | MsG0380013951.01.T01:CDS | 50.0% | |
| TCGGGCTTCCGGAATACAAT+GGG | + | Chr3:48498751-48498770 | MsG0380013951.01.T01:CDS | 50.0% | |
| TTCGGGCTTCCGGAATACAA+TGG | + | Chr3:48498750-48498769 | MsG0380013951.01.T01:CDS | 50.0% | |
| ! | CCATGCATTGATGGGTGTTG+AGG | - | Chr3:48498131-48498150 | None:intergenic | 50.0% |
| ! | GTTGAAGGCGTAGGTGTTGT+TGG | + | Chr3:48498686-48498705 | MsG0380013951.01.T01:CDS | 50.0% |
| !! | CAGGCTTTGGAAGGAATTCC+AGG | + | Chr3:48498908-48498927 | MsG0380013951.01.T01:CDS | 50.0% |
| !! | GCTTTGGAAGGAATTCCAGG+TGG | + | Chr3:48498911-48498930 | MsG0380013951.01.T01:CDS | 50.0% |
| ATTCCGGAAGCCCGAAGCAT+CGG | - | Chr3:48498746-48498765 | None:intergenic | 55.0% | |
| GTGAGAGTTGAGGCCCCCAA+GGG | + | Chr3:48499061-48499080 | MsG0380013951.01.T01:CDS | 60.0% | |
| TGAGAGTTGAGGCCCCCAAG+GGG | + | Chr3:48499062-48499081 | MsG0380013951.01.T01:CDS | 60.0% | |
| TGTGAGAGTTGAGGCCCCCA+AGG | + | Chr3:48499060-48499079 | MsG0380013951.01.T01:CDS | 60.0% | |
| GAGAGTTGAGGCCCCCAAGG+GGG | + | Chr3:48499063-48499082 | MsG0380013951.01.T01:CDS | 65.0% | |
| GAGGCCCCCAAGGGGGAATT+AGG | + | Chr3:48499070-48499089 | MsG0380013951.01.T01:CDS | 65.0% | |
| GGACCGATGCTTCGGGCTTC+CGG | + | Chr3:48498740-48498759 | MsG0380013951.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 48498122 | 48499261 | 48498122 | ID=MsG0380013951.01;Name=MsG0380013951.01 |
| Chr3 | mRNA | 48498122 | 48499261 | 48498122 | ID=MsG0380013951.01.T01;Parent=MsG0380013951.01;Name=MsG0380013951.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|379 |
| Chr3 | exon | 48498122 | 48499261 | 48498122 | ID=MsG0380013951.01.T01:exon:8514;Parent=MsG0380013951.01.T01 |
| Chr3 | CDS | 48498122 | 48499261 | 48498122 | ID=MsG0380013951.01.T01:cds;Parent=MsG0380013951.01.T01 |
| Gene Sequence |
| Protein sequence |
