AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013967.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013967.01.T01 MTR_3g035600 99.065 535 5 0 1 535 229 763 0.0 1076
MsG0380013967.01.T01 MTR_3g035600 47.143 560 259 10 1 540 954 1496 6.73e-151 469
MsG0380013967.01.T01 MTR_0002s0580 96.104 539 21 0 6 544 210 748 0.0 1064
MsG0380013967.01.T01 MTR_0002s0580 45.833 576 243 12 1 540 889 1431 1.46e-149 465
MsG0380013967.01.T01 MTR_4g051177 99.458 369 2 0 1 369 213 581 0.0 746
MsG0380013967.01.T01 MTR_7g051460 94.737 114 6 0 219 332 5 118 4.61e-71 227
MsG0380013967.01.T01 MTR_7g025010 61.677 167 35 4 153 317 416 555 5.85e-50 181
MsG0380013967.01.T01 MTR_1g084890 40.777 206 106 5 262 463 4 197 1.18e-39 143
MsG0380013967.01.T01 MTR_0187s0090 46.575 146 67 3 312 457 31 165 2.16e-37 136
MsG0380013967.01.T01 MTR_1g088140 73.846 65 17 0 39 103 3 67 2.31e-25 99.4
MsG0380013967.01.T01 MTR_2g100210 46.429 84 41 1 439 518 2 85 4.29e-16 78.2
MsG0380013967.01.T01 MTR_8g020540 53.571 56 26 0 336 391 16 71 1.61e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013967.01.T01 ATCG00350 97.253 546 15 0 1 546 205 750 0.0 1085
MsG0380013967.01.T01 ATCG00340 46.831 568 249 12 1 540 185 727 3.44e-157 466

Find 153 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGTCTTCTTAGGATTATTT+TGG 0.179420 3:-48530526 MsG0380013967.01.T01:CDS
CTACTCCAGCATTTAGAAAT+TGG 0.195609 3:+48531626 None:intergenic
TACCCATGGGGTCTCTTTCT+TGG 0.197639 3:-48531684 None:intergenic
TTATGACCTTGGCCTGTAAA+TGG 0.208849 3:+48531307 None:intergenic
GGTGGCTCCGCGATTTCTTA+TGG 0.209964 3:-48530364 MsG0380013967.01.T01:CDS
AACTAAAAGCCCATACAAAA+TGG 0.216247 3:+48530270 None:intergenic
GCATTTAGAAATTGGTTAAT+TGG 0.221422 3:+48531634 None:intergenic
CAGAGTTCGATTACCATTAA+TGG 0.241096 3:-48530386 MsG0380013967.01.T01:CDS
GTCATATGTATAGAACTAAT+TGG 0.254482 3:-48531375 MsG0380013967.01.T01:CDS
TATTCAGCGGGCGTGGTTAT+TGG 0.259323 3:-48530238 MsG0380013967.01.T01:CDS
CCATACCTAGCTACTGACTA+TGG 0.261418 3:-48531169 MsG0380013967.01.T01:CDS
GCCTGTAAATGGACCTTTAT+GGG 0.263647 3:+48531318 None:intergenic
AATGATACCATGAGTGCTTT+AGG 0.272004 3:-48530926 MsG0380013967.01.T01:CDS
GGCCTGTAAATGGACCTTTA+TGG 0.278198 3:+48531317 None:intergenic
GCTTGGGATCACGTCTTCTT+AGG 0.285396 3:-48530536 MsG0380013967.01.T01:CDS
TATCTTGAATCGGGATCTTT+TGG 0.304076 3:-48531572 MsG0380013967.01.T01:CDS
ATGAGGAAGTGGGATCTCTT+TGG 0.313358 3:+48531600 None:intergenic
TCCCAGGTAATTCAGTCTTA+TGG 0.314824 3:-48530332 MsG0380013967.01.T01:CDS
GAGCATGCCATGACGTTGTT+AGG 0.314831 3:+48531269 None:intergenic
AACTTATTGAATCCATCGTT+TGG 0.322049 3:-48530211 MsG0380013967.01.T01:CDS
GAAAATGCAGTCAGATGTTT+GGG 0.325299 3:-48530462 MsG0380013967.01.T01:CDS
GTGGCTCCGCGATTTCTTAT+GGG 0.331473 3:-48530363 MsG0380013967.01.T01:CDS
ATCGCGGAGCCACCCATTAA+TGG 0.333155 3:+48530373 None:intergenic
CAATCATATCACATCTCAAC+TGG 0.341001 3:-48530994 MsG0380013967.01.T01:CDS
CTGGTGCTTGCTGTTGCACC+AGG 0.342038 3:+48530803 None:intergenic
TCATATGTATAGAACTAATT+GGG 0.342728 3:-48531374 MsG0380013967.01.T01:CDS
GCCCATAAAGGTCCATTTAC+AGG 0.345598 3:-48531319 MsG0380013967.01.T01:CDS
CTCATGAATTTATCTTGAAT+CGG 0.348375 3:-48531582 MsG0380013967.01.T01:CDS
TGAGGAAGTGGGATCTCTTT+GGG 0.356081 3:+48531601 None:intergenic
TCTATTAACCTAGCTATGTT+AGG 0.360076 3:-48531241 MsG0380013967.01.T01:CDS
ACCCATGGGGTCTCTTTCTT+GGG 0.365187 3:-48531683 None:intergenic
ATGGGGTCTCTTTCTTGGGC+GGG 0.370242 3:-48531679 MsG0380013967.01.T01:CDS
AGGAGTAACCCATTACCTTC+TGG 0.371976 3:-48530117 MsG0380013967.01.T01:CDS
GGAGGATTAGATCCACTAAC+TGG 0.378362 3:-48531463 MsG0380013967.01.T01:CDS
GGAAAATGCAGTCAGATGTT+TGG 0.378696 3:-48530463 MsG0380013967.01.T01:CDS
ATGATACCATGAGTGCTTTA+GGG 0.380891 3:-48530925 MsG0380013967.01.T01:CDS
TCACACATCACATGTGGATT+GGG 0.381837 3:-48531129 MsG0380013967.01.T01:CDS
GGTTCCTCATTATCTGCATA+TGG 0.386475 3:-48530311 MsG0380013967.01.T01:CDS
CGTGATCCCAAGCGGATACT+TGG 0.391033 3:+48530546 None:intergenic
AAACCAAGATTTGCTTTATC+CGG 0.396931 3:+48530608 None:intergenic
GCTTTGTTACCTATTCCATT+AGG 0.401056 3:-48530734 MsG0380013967.01.T01:CDS
ATACCGGATAAAGCAAATCT+TGG 0.401966 3:-48530611 MsG0380013967.01.T01:CDS
AGAGTTCGATTACCATTAAT+GGG 0.405649 3:-48530385 MsG0380013967.01.T01:CDS
TCTGCAGTTCCTAATGGAAT+AGG 0.406087 3:+48530725 None:intergenic
ATTAACCAATTTCTAAATGC+TGG 0.408163 3:-48531631 MsG0380013967.01.T01:CDS
TATAGAACTAATTGGGGTAT+TGG 0.411228 3:-48531367 MsG0380013967.01.T01:CDS
TCATGAATTTATCTTGAATC+GGG 0.415716 3:-48531581 MsG0380013967.01.T01:CDS
GAATTATTGCAGTAGGATAA+TGG 0.419421 3:-48530058 None:intergenic
ACTTATTGAATCCATCGTTT+GGG 0.421489 3:-48530210 MsG0380013967.01.T01:CDS
TACAACCTGTCTTTGCTCAA+TGG 0.423189 3:-48530865 MsG0380013967.01.T01:CDS
GCACCAGGGGCCGTTGTACC+AGG 0.426604 3:+48530818 None:intergenic
TTGGGGCGGTGGTGATTTAG+TGG 0.428676 3:-48530774 MsG0380013967.01.T01:CDS
TTCACACATCACATGTGGAT+TGG 0.431451 3:-48531130 MsG0380013967.01.T01:CDS
CGGTTCCCTTGTGATGGACC+TGG 0.443562 3:-48530584 MsG0380013967.01.T01:CDS
CCTTGTGATGGACCTGGAAG+AGG 0.443807 3:-48530578 MsG0380013967.01.T01:CDS
GGAGTAACCCATTACCTTCT+GGG 0.445728 3:-48530116 MsG0380013967.01.T01:CDS
GTTGCTCCTTCGGCAAAACT+TGG 0.449333 3:+48531538 None:intergenic
CAATTCCACCCAGAAGGTAA+TGG 0.450163 3:+48530108 None:intergenic
AATTCCACCCAGAAGGTAAT+GGG 0.452661 3:+48530109 None:intergenic
CATATAGACCTTTATGACCT+TGG 0.454551 3:+48531296 None:intergenic
ACCACCGCCCCAAGTCAAAC+TGG 0.455420 3:+48530784 None:intergenic
TAAATGATGATGTGCAATAT+CGG 0.461922 3:+48531426 None:intergenic
ACGGTATTGATACTCCTAAA+AGG 0.462077 3:-48530662 MsG0380013967.01.T01:CDS
AGATCGTTGTATCGAGTAGT+TGG 0.464830 3:+48531046 None:intergenic
AAGGCTCTAGGCTGAGTAGC+AGG 0.466471 3:+48530164 None:intergenic
CAGCAAGCACCAGTTTGACT+TGG 0.466663 3:-48530793 MsG0380013967.01.T01:CDS
CCGCGATTTCTTATGGGCGC+AGG 0.468581 3:-48530357 MsG0380013967.01.T01:CDS
AGCAAGCACCAGTTTGACTT+GGG 0.471379 3:-48530792 MsG0380013967.01.T01:CDS
AAGATAAATTCATGAGGAAG+TGG 0.472110 3:+48531589 None:intergenic
CGGTGGTGATTTAGTGGCAG+TGG 0.476707 3:-48530768 MsG0380013967.01.T01:CDS
ACCAGTTTGACTTGGGGCGG+TGG 0.479028 3:-48530785 MsG0380013967.01.T01:CDS
CATATGGTGAGCTACAATAA+TGG 0.482651 3:+48531210 None:intergenic
CTTGTGATGGACCTGGAAGA+GGG 0.485987 3:-48530577 MsG0380013967.01.T01:CDS
TCAGTAGCTAGGTATGGATA+AGG 0.486306 3:+48531175 None:intergenic
CTTATGGGCGCAGGCATCCC+AGG 0.486815 3:-48530348 MsG0380013967.01.T01:CDS
ACTAAAAGCCCATACAAAAT+GGG 0.487362 3:+48530271 None:intergenic
TTTACAGGCCAAGGTCATAA+AGG 0.488025 3:-48531304 MsG0380013967.01.T01:CDS
CGCTTTAGCACCTGGTACAA+CGG 0.494368 3:-48530828 MsG0380013967.01.T01:CDS
TAGAGCCTTGAGCATTGTAC+AGG 0.496375 3:-48530150 MsG0380013967.01.T01:CDS
TGGGGTCTCTTTCTTGGGCG+GGG 0.502147 3:-48531678 MsG0380013967.01.T01:CDS
AAGGAGGCATAGCATACATA+TGG 0.504038 3:+48531194 None:intergenic
TGTATCCATTGAGCAAAGAC+AGG 0.505296 3:+48530860 None:intergenic
TTAGCAAGAATTATTGCAGT+AGG 0.506140 3:-48530065 MsG0380013967.01.T01:CDS
GTTTAATGTTTCTATTCAGC+GGG 0.509455 3:-48530250 MsG0380013967.01.T01:CDS
CCATAGTCAGTAGCTAGGTA+TGG 0.512147 3:+48531169 None:intergenic
ATGTTTCTATTCAGCGGGCG+TGG 0.515878 3:-48530245 MsG0380013967.01.T01:CDS
TCGTAGCTCACGATTGATAC+CGG 0.518428 3:-48530627 MsG0380013967.01.T01:CDS
CGCCCAAGAAAGAGACCCCA+TGG 0.525071 3:+48531681 None:intergenic
TATCAGAAAACATATCTTGA+GGG 0.525854 3:+48530900 None:intergenic
TAGTAATATTCCATTTCAGT+TGG 0.528021 3:-48530484 MsG0380013967.01.T01:CDS
GCACCTGGTACAACGGCCCC+TGG 0.528550 3:-48530821 MsG0380013967.01.T01:CDS
TGTACAATGCTCAAGGCTCT+AGG 0.531036 3:+48530152 None:intergenic
AACCATAAGACTGAATTACC+TGG 0.536677 3:+48530330 None:intergenic
AAAGGTCCATTTACAGGCCA+AGG 0.537287 3:-48531313 MsG0380013967.01.T01:CDS
TGCATTTACAATTCACGTGA+CGG 0.539121 3:-48530681 MsG0380013967.01.T01:CDS
AGTTTAATGTTTCTATTCAG+CGG 0.541369 3:-48530251 MsG0380013967.01.T01:CDS
GACATGCCAAGTATCCGCTT+GGG 0.542528 3:-48530552 MsG0380013967.01.T01:CDS
ATTGTACAGGGACGTGCTGT+AGG 0.545781 3:-48530137 MsG0380013967.01.T01:CDS
GGACATGCCAAGTATCCGCT+TGG 0.547118 3:-48530553 MsG0380013967.01.T01:CDS
AGCACCAGTTTGACTTGGGG+CGG 0.550477 3:-48530788 MsG0380013967.01.T01:CDS
TGGGGTAGTATAAATGATCA+AGG 0.551843 3:-48530443 MsG0380013967.01.T01:CDS
AATACCCACGCTTTAGCACC+TGG 0.552085 3:-48530836 MsG0380013967.01.T01:CDS
TCAAAGAGCCTAACATAGCT+AGG 0.552888 3:+48531233 None:intergenic
GGTGGTGATTTAGTGGCAGT+GGG 0.553216 3:-48530767 MsG0380013967.01.T01:CDS
TGTGATGGACCTGGAAGAGG+GGG 0.553735 3:-48530575 MsG0380013967.01.T01:CDS
GGTGCTTGCTGTTGCACCAG+GGG 0.560321 3:+48530805 None:intergenic
CCTCTTCCAGGTCCATCACA+AGG 0.563214 3:+48530578 None:intergenic
AAGACCATATGCAGATAATG+AGG 0.563400 3:+48530307 None:intergenic
ATTAGTTCTATACATATGAC+CGG 0.563460 3:+48531378 None:intergenic
CACACATCACATGTGGATTG+GGG 0.565985 3:-48531128 MsG0380013967.01.T01:CDS
CATACCTAGCTACTGACTAT+GGG 0.569320 3:-48531168 MsG0380013967.01.T01:CDS
AGGGCGCCCTAAAGCACTCA+TGG 0.572639 3:+48530919 None:intergenic
ACTAATTGGGGTATTGGTCA+TGG 0.575441 3:-48531361 MsG0380013967.01.T01:CDS
GAGGATTAGATCCACTAACT+GGG 0.585236 3:-48531462 MsG0380013967.01.T01:CDS
TGGTGCTTGCTGTTGCACCA+GGG 0.586980 3:+48530804 None:intergenic
GGAGTAGTAACTCATATCAC+AGG 0.592996 3:-48530422 MsG0380013967.01.T01:CDS
TTGTGATGGACCTGGAAGAG+GGG 0.597055 3:-48530576 MsG0380013967.01.T01:CDS
GTGTCCCATAGTCAGTAGCT+AGG 0.599930 3:+48531164 None:intergenic
CATGGGGTCTCTTTCTTGGG+CGG 0.600864 3:-48531680 MsG0380013967.01.T01:CDS
TTGTACCAGGTGCTAAAGCG+TGG 0.601575 3:+48530831 None:intergenic
CATTGTTCACACATCACATG+TGG 0.601835 3:-48531135 MsG0380013967.01.T01:CDS
AGATAAATTCATGAGGAAGT+GGG 0.608025 3:+48531590 None:intergenic
ACGTCCCTGTACAATGCTCA+AGG 0.614360 3:+48530145 None:intergenic
GTATCAGAAAACATATCTTG+AGG 0.618403 3:+48530899 None:intergenic
ACCATAAGACTGAATTACCT+GGG 0.618611 3:+48530331 None:intergenic
TTTATTATGAGCCCAAACGA+TGG 0.622137 3:+48530199 None:intergenic
TAAGAAGAATGCCCACGTTG+TGG 0.631859 3:+48530085 None:intergenic
ATGAGATCCTAACAACGTCA+TGG 0.632139 3:-48531276 MsG0380013967.01.T01:CDS
CTTGAATTGGTCAAAATACG+CGG 0.632891 3:-48531503 MsG0380013967.01.T01:CDS
ACACATCACATGTGGATTGG+GGG 0.634734 3:-48531127 MsG0380013967.01.T01:CDS
CATATGTATAGAACTAATTG+GGG 0.638756 3:-48531373 MsG0380013967.01.T01:CDS
AATCATATCACATCTCAACT+GGG 0.646578 3:-48530993 MsG0380013967.01.T01:CDS
GGTGATTTAGTGGCAGTGGG+CGG 0.646734 3:-48530764 MsG0380013967.01.T01:CDS
GTAGCTAGGTATGGATAAGG+AGG 0.647093 3:+48531178 None:intergenic
TTGTGGCAATTCCACCCAGA+AGG 0.649144 3:+48530102 None:intergenic
CTCTTCCAGGTCCATCACAA+GGG 0.657181 3:+48530579 None:intergenic
TGGGTGGAATTGCCACAACG+TGG 0.661193 3:-48530097 MsG0380013967.01.T01:CDS
GCAAGCACCAGTTTGACTTG+GGG 0.661875 3:-48530791 MsG0380013967.01.T01:CDS
TGTACCAGGTGCTAAAGCGT+GGG 0.666858 3:+48530832 None:intergenic
AGAGCCTTGAGCATTGTACA+GGG 0.668341 3:-48530149 MsG0380013967.01.T01:CDS
GGATTAGATCCACTAACTGG+GGG 0.669823 3:-48531460 MsG0380013967.01.T01:CDS
GACAGGTTGTAATTGTATAG+CGG 0.670000 3:+48530877 None:intergenic
TAAGAAGACGTGATCCCAAG+CGG 0.675497 3:+48530538 None:intergenic
GTGATGGACCTGGAAGAGGG+GGG 0.678610 3:-48530574 MsG0380013967.01.T01:CDS
GGGTGGAATTGCCACAACGT+GGG 0.678793 3:-48530096 MsG0380013967.01.T01:CDS
GTTCGATTACCATTAATGGG+TGG 0.679372 3:-48530382 MsG0380013967.01.T01:CDS
CCTGCGCCCATAAGAAATCG+CGG 0.679585 3:+48530357 None:intergenic
GTAGTAACTCATATCACAGG+AGG 0.680008 3:-48530419 MsG0380013967.01.T01:CDS
AGGATTAGATCCACTAACTG+GGG 0.688291 3:-48531461 MsG0380013967.01.T01:CDS
CGATTCAAGATAAATTCATG+AGG 0.691048 3:+48531583 None:intergenic
GTAACCCATTACCTTCTGGG+TGG 0.699177 3:-48530113 MsG0380013967.01.T01:CDS
GCCCAAGAAAGAGACCCCAT+GGG 0.703472 3:+48531682 None:intergenic
AAAATGCAGTCAGATGTTTG+GGG 0.776320 3:-48530461 MsG0380013967.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATATGTATAGAACTAATT+GGG - Chr3:48530366-48530385 MsG0380013967.01.T01:CDS 20.0%
!!! TGGTATAAAAGATATTTTAG+AGG - Chr3:48530399-48530418 MsG0380013967.01.T01:CDS 20.0%
! ACCAATTCAAGGTAAAAAAT+GGG + Chr3:48530228-48530247 None:intergenic 25.0%
! ATAGTCTCTTACCATAAAAA+TGG + Chr3:48530671-48530690 None:intergenic 25.0%
! ATTAACCAATTTCTAAATGC+TGG - Chr3:48530109-48530128 MsG0380013967.01.T01:CDS 25.0%
! CATATGTATAGAACTAATTG+GGG - Chr3:48530367-48530386 MsG0380013967.01.T01:CDS 25.0%
! CTCATGAATTTATCTTGAAT+CGG - Chr3:48530158-48530177 MsG0380013967.01.T01:CDS 25.0%
! GCATTTAGAAATTGGTTAAT+TGG + Chr3:48530109-48530128 None:intergenic 25.0%
! GTCATATGTATAGAACTAAT+TGG - Chr3:48530365-48530384 MsG0380013967.01.T01:CDS 25.0%
! TAGTAATATTCCATTTCAGT+TGG - Chr3:48531256-48531275 MsG0380013967.01.T01:CDS 25.0%
! TATCAGAAAACATATCTTGA+GGG + Chr3:48530843-48530862 None:intergenic 25.0%
! TCATGAATTTATCTTGAATC+GGG - Chr3:48530159-48530178 MsG0380013967.01.T01:CDS 25.0%
!! AGTTTAATGTTTCTATTCAG+CGG - Chr3:48531489-48531508 MsG0380013967.01.T01:CDS 25.0%
!! TAAATGATGATGTGCAATAT+CGG + Chr3:48530317-48530336 None:intergenic 25.0%
!!! ATAAAGCAAATCTTGGTTTT+CGG - Chr3:48531136-48531155 MsG0380013967.01.T01:CDS 25.0%
!!! ATTAGTTCTATACATATGAC+CGG + Chr3:48530365-48530384 None:intergenic 25.0%
AAAAAATCTGCAGTTCCTAA+TGG + Chr3:48531024-48531043 None:intergenic 30.0%
AACTAAAAGCCCATACAAAA+TGG + Chr3:48531473-48531492 None:intergenic 30.0%
AACTTATTGAATCCATCGTT+TGG - Chr3:48531529-48531548 MsG0380013967.01.T01:CDS 30.0%
AAGATAAATTCATGAGGAAG+TGG + Chr3:48530154-48530173 None:intergenic 30.0%
AATCATATCACATCTCAACT+GGG - Chr3:48530747-48530766 MsG0380013967.01.T01:CDS 30.0%
ACTAAAAGCCCATACAAAAT+GGG + Chr3:48531472-48531491 None:intergenic 30.0%
ACTTATTGAATCCATCGTTT+GGG - Chr3:48531530-48531549 MsG0380013967.01.T01:CDS 30.0%
AGAGTTCGATTACCATTAAT+GGG - Chr3:48531355-48531374 MsG0380013967.01.T01:CDS 30.0%
AGATAAATTCATGAGGAAGT+GGG + Chr3:48530153-48530172 None:intergenic 30.0%
CCAATTCAAGGTAAAAAATG+GGG + Chr3:48530227-48530246 None:intergenic 30.0%
CGATTCAAGATAAATTCATG+AGG + Chr3:48530160-48530179 None:intergenic 30.0%
GACCAATTCAAGGTAAAAAA+TGG + Chr3:48530229-48530248 None:intergenic 30.0%
GTATCAGAAAACATATCTTG+AGG + Chr3:48530844-48530863 None:intergenic 30.0%
TATAGAACTAATTGGGGTAT+TGG - Chr3:48530373-48530392 MsG0380013967.01.T01:CDS 30.0%
TCTATTAACCTAGCTATGTT+AGG - Chr3:48530499-48530518 MsG0380013967.01.T01:CDS 30.0%
TTAGCAAGAATTATTGCAGT+AGG - Chr3:48531675-48531694 MsG0380013967.01.T01:CDS 30.0%
! AAACCAAGATTTGCTTTATC+CGG + Chr3:48531135-48531154 None:intergenic 30.0%
! AACTGGGTGTGTATATTTTT+AGG - Chr3:48530763-48530782 MsG0380013967.01.T01:CDS 30.0%
! ACGTCTTCTTAGGATTATTT+TGG - Chr3:48531214-48531233 MsG0380013967.01.T01:CDS 30.0%
! GTTTAATGTTTCTATTCAGC+GGG - Chr3:48531490-48531509 MsG0380013967.01.T01:CDS 30.0%
!! TTTTTAGGCTTTCACAGTTT+TGG - Chr3:48530778-48530797 MsG0380013967.01.T01:CDS 30.0%
!!! ATTAGGAACTGCAGATTTTT+TGG - Chr3:48531023-48531042 MsG0380013967.01.T01:CDS 30.0%
!!! GCATATGGTCTTTTTTTCTT+AGG - Chr3:48531444-48531463 MsG0380013967.01.T01:CDS 30.0%
AAAATGCAGTCAGATGTTTG+GGG - Chr3:48531279-48531298 MsG0380013967.01.T01:CDS 35.0%
AACCATAAGACTGAATTACC+TGG + Chr3:48531413-48531432 None:intergenic 35.0%
AAGACCATATGCAGATAATG+AGG + Chr3:48531436-48531455 None:intergenic 35.0%
AATGATACCATGAGTGCTTT+AGG - Chr3:48530814-48530833 MsG0380013967.01.T01:CDS 35.0%
ACCATAAGACTGAATTACCT+GGG + Chr3:48531412-48531431 None:intergenic 35.0%
ATACCGGATAAAGCAAATCT+TGG - Chr3:48531129-48531148 MsG0380013967.01.T01:CDS 35.0%
ATGATACCATGAGTGCTTTA+GGG - Chr3:48530815-48530834 MsG0380013967.01.T01:CDS 35.0%
CAATCATATCACATCTCAAC+TGG - Chr3:48530746-48530765 MsG0380013967.01.T01:CDS 35.0%
CAGAGTTCGATTACCATTAA+TGG - Chr3:48531354-48531373 MsG0380013967.01.T01:CDS 35.0%
CATATAGACCTTTATGACCT+TGG + Chr3:48530447-48530466 None:intergenic 35.0%
CATATGGTGAGCTACAATAA+TGG + Chr3:48530533-48530552 None:intergenic 35.0%
CTACTCCAGCATTTAGAAAT+TGG + Chr3:48530117-48530136 None:intergenic 35.0%
CTTGAATTGGTCAAAATACG+CGG - Chr3:48530237-48530256 MsG0380013967.01.T01:CDS 35.0%
GAAAATGCAGTCAGATGTTT+GGG - Chr3:48531278-48531297 MsG0380013967.01.T01:CDS 35.0%
GACAGGTTGTAATTGTATAG+CGG + Chr3:48530866-48530885 None:intergenic 35.0%
TGCATTTACAATTCACGTGA+CGG - Chr3:48531059-48531078 MsG0380013967.01.T01:CDS 35.0%
TGGGGTAGTATAAATGATCA+AGG - Chr3:48531297-48531316 MsG0380013967.01.T01:CDS 35.0%
TTTATTATGAGCCCAAACGA+TGG + Chr3:48531544-48531563 None:intergenic 35.0%
! ACTGCATTTTCCAACTGAAA+TGG + Chr3:48531269-48531288 None:intergenic 35.0%
! GAGCAAATAGAACTCCTTTT+AGG + Chr3:48531095-48531114 None:intergenic 35.0%
! GCAATTCTTTTTCTCATTGC+CGG - Chr3:48530343-48530362 MsG0380013967.01.T01:CDS 35.0%
! GCTTTGTTACCTATTCCATT+AGG - Chr3:48531006-48531025 MsG0380013967.01.T01:CDS 35.0%
! TATCTTGAATCGGGATCTTT+TGG - Chr3:48530168-48530187 MsG0380013967.01.T01:CDS 35.0%
!! ACGGTATTGATACTCCTAAA+AGG - Chr3:48531078-48531097 MsG0380013967.01.T01:CDS 35.0%
!! GATATTTTAGAGGCCCATAA+AGG - Chr3:48530409-48530428 MsG0380013967.01.T01:CDS 35.0%
!!! CCCCATTTTTTACCTTGAAT+TGG - Chr3:48530224-48530243 MsG0380013967.01.T01:CDS 35.0%
AAAAAATGGGGTTGCTCCTT+CGG + Chr3:48530215-48530234 None:intergenic 40.0%
AATTCCACCCAGAAGGTAAT+GGG + Chr3:48531634-48531653 None:intergenic 40.0%
AGATCGTTGTATCGAGTAGT+TGG + Chr3:48530697-48530716 None:intergenic 40.0%
AGGATTAGATCCACTAACTG+GGG - Chr3:48530279-48530298 MsG0380013967.01.T01:CDS 40.0%
ATGAGATCCTAACAACGTCA+TGG - Chr3:48530464-48530483 MsG0380013967.01.T01:CDS 40.0%
ATTGGGGGATTTCTCATAGT+TGG - Chr3:48530628-48530647 MsG0380013967.01.T01:CDS 40.0%
CATTGTTCACACATCACATG+TGG - Chr3:48530605-48530624 MsG0380013967.01.T01:CDS 40.0%
GAGGATTAGATCCACTAACT+GGG - Chr3:48530278-48530297 MsG0380013967.01.T01:CDS 40.0%
GCCTGTAAATGGACCTTTAT+GGG + Chr3:48530425-48530444 None:intergenic 40.0%
GGAAAATGCAGTCAGATGTT+TGG - Chr3:48531277-48531296 MsG0380013967.01.T01:CDS 40.0%
GGAGTAGTAACTCATATCAC+AGG - Chr3:48531318-48531337 MsG0380013967.01.T01:CDS 40.0%
GGTTCCTCATTATCTGCATA+TGG - Chr3:48531429-48531448 MsG0380013967.01.T01:CDS 40.0%
GTAGTAACTCATATCACAGG+AGG - Chr3:48531321-48531340 MsG0380013967.01.T01:CDS 40.0%
GTTCGATTACCATTAATGGG+TGG - Chr3:48531358-48531377 MsG0380013967.01.T01:CDS 40.0%
TACAACCTGTCTTTGCTCAA+TGG - Chr3:48530875-48530894 MsG0380013967.01.T01:CDS 40.0%
TCAAAGAGCCTAACATAGCT+AGG + Chr3:48530510-48530529 None:intergenic 40.0%
TCACACATCACATGTGGATT+GGG - Chr3:48530611-48530630 MsG0380013967.01.T01:CDS 40.0%
TCAGTAGCTAGGTATGGATA+AGG + Chr3:48530568-48530587 None:intergenic 40.0%
TCCCAGGTAATTCAGTCTTA+TGG - Chr3:48531408-48531427 MsG0380013967.01.T01:CDS 40.0%
TCTGCAGTTCCTAATGGAAT+AGG + Chr3:48531018-48531037 None:intergenic 40.0%
TGTATCCATTGAGCAAAGAC+AGG + Chr3:48530883-48530902 None:intergenic 40.0%
TTATGACCTTGGCCTGTAAA+TGG + Chr3:48530436-48530455 None:intergenic 40.0%
TTCACACATCACATGTGGAT+TGG - Chr3:48530610-48530629 MsG0380013967.01.T01:CDS 40.0%
TTTACAGGCCAAGGTCATAA+AGG - Chr3:48530436-48530455 MsG0380013967.01.T01:CDS 40.0%
! AAGGAGGCATAGCATACATA+TGG + Chr3:48530549-48530568 None:intergenic 40.0%
! CATACCTAGCTACTGACTAT+GGG - Chr3:48530572-48530591 MsG0380013967.01.T01:CDS 40.0%
! CTTAGGTGCCCATTTTGTAT+GGG - Chr3:48531461-48531480 MsG0380013967.01.T01:CDS 40.0%
! CTTTATCCAAGTTTTGCCGA+AGG - Chr3:48530196-48530215 MsG0380013967.01.T01:CDS 40.0%
! TCTTAGGTGCCCATTTTGTA+TGG - Chr3:48531460-48531479 MsG0380013967.01.T01:CDS 40.0%
!! ACTAATTGGGGTATTGGTCA+TGG - Chr3:48530379-48530398 MsG0380013967.01.T01:CDS 40.0%
!! GACTTTCTTACTTTTCGTGG+AGG - Chr3:48530259-48530278 MsG0380013967.01.T01:CDS 40.0%
!!! CGCGTATTTTGACCAATTCA+AGG + Chr3:48530239-48530258 None:intergenic 40.0%
!!! TGCACATGCAGCCATTTTTA+TGG - Chr3:48530657-48530676 MsG0380013967.01.T01:CDS 40.0%
AAAGGTCCATTTACAGGCCA+AGG - Chr3:48530427-48530446 MsG0380013967.01.T01:CDS 45.0%
AGGAGTAACCCATTACCTTC+TGG - Chr3:48531623-48531642 MsG0380013967.01.T01:CDS 45.0%
ATGAGGAAGTGGGATCTCTT+TGG + Chr3:48530143-48530162 None:intergenic 45.0%
CAATTCCACCCAGAAGGTAA+TGG + Chr3:48531635-48531654 None:intergenic 45.0%
CCATAGTCAGTAGCTAGGTA+TGG + Chr3:48530574-48530593 None:intergenic 45.0%
GCCCATAAAGGTCCATTTAC+AGG - Chr3:48530421-48530440 MsG0380013967.01.T01:CDS 45.0%
GGAGGATTAGATCCACTAAC+TGG - Chr3:48530277-48530296 MsG0380013967.01.T01:CDS 45.0%
GGAGTAACCCATTACCTTCT+GGG - Chr3:48531624-48531643 MsG0380013967.01.T01:CDS 45.0%
GGATTAGATCCACTAACTGG+GGG - Chr3:48530280-48530299 MsG0380013967.01.T01:CDS 45.0%
GGCCTGTAAATGGACCTTTA+TGG + Chr3:48530426-48530445 None:intergenic 45.0%
GTAGCTAGGTATGGATAAGG+AGG + Chr3:48530565-48530584 None:intergenic 45.0%
TAAGAAGAATGCCCACGTTG+TGG + Chr3:48531658-48531677 None:intergenic 45.0%
TAAGAAGACGTGATCCCAAG+CGG + Chr3:48531205-48531224 None:intergenic 45.0%
TCGTAGCTCACGATTGATAC+CGG - Chr3:48531113-48531132 MsG0380013967.01.T01:CDS 45.0%
TGAGGAAGTGGGATCTCTTT+GGG + Chr3:48530142-48530161 None:intergenic 45.0%
TGTACAATGCTCAAGGCTCT+AGG + Chr3:48531591-48531610 None:intergenic 45.0%
! AGAGCCTTGAGCATTGTACA+GGG - Chr3:48531591-48531610 MsG0380013967.01.T01:CDS 45.0%
! AGCAAGCACCAGTTTGACTT+GGG - Chr3:48530948-48530967 MsG0380013967.01.T01:CDS 45.0%
! CACACATCACATGTGGATTG+GGG - Chr3:48530612-48530631 MsG0380013967.01.T01:CDS 45.0%
! CCATACCTAGCTACTGACTA+TGG - Chr3:48530571-48530590 MsG0380013967.01.T01:CDS 45.0%
! TAGAGCCTTGAGCATTGTAC+AGG - Chr3:48531590-48531609 MsG0380013967.01.T01:CDS 45.0%
!! ACACATCACATGTGGATTGG+GGG - Chr3:48530613-48530632 MsG0380013967.01.T01:CDS 45.0%
!! GCGGACTTTCTTACTTTTCG+TGG - Chr3:48530256-48530275 MsG0380013967.01.T01:CDS 45.0%
AATACCCACGCTTTAGCACC+TGG - Chr3:48530904-48530923 MsG0380013967.01.T01:CDS 50.0%
ACGTCCCTGTACAATGCTCA+AGG + Chr3:48531598-48531617 None:intergenic 50.0%
ATCCACTAACTGGGGGTCTA+TGG - Chr3:48530287-48530306 MsG0380013967.01.T01:CDS 50.0%
ATTGTACAGGGACGTGCTGT+AGG - Chr3:48531603-48531622 MsG0380013967.01.T01:CDS 50.0%
CAGCAAGCACCAGTTTGACT+TGG - Chr3:48530947-48530966 MsG0380013967.01.T01:CDS 50.0%
CGCTTTAGCACCTGGTACAA+CGG - Chr3:48530912-48530931 MsG0380013967.01.T01:CDS 50.0%
CTCTTCCAGGTCCATCACAA+GGG + Chr3:48531164-48531183 None:intergenic 50.0%
GACATGCCAAGTATCCGCTT+GGG - Chr3:48531188-48531207 MsG0380013967.01.T01:CDS 50.0%
GAGCATGCCATGACGTTGTT+AGG + Chr3:48530474-48530493 None:intergenic 50.0%
GCTTGGGATCACGTCTTCTT+AGG - Chr3:48531204-48531223 MsG0380013967.01.T01:CDS 50.0%
GGTGGTGATTTAGTGGCAGT+GGG - Chr3:48530973-48530992 MsG0380013967.01.T01:CDS 50.0%
GTAACCCATTACCTTCTGGG+TGG - Chr3:48531627-48531646 MsG0380013967.01.T01:CDS 50.0%
GTGGCTCCGCGATTTCTTAT+GGG - Chr3:48531377-48531396 MsG0380013967.01.T01:CDS 50.0%
GTGTCCCATAGTCAGTAGCT+AGG + Chr3:48530579-48530598 None:intergenic 50.0%
GTTGCTCCTTCGGCAAAACT+TGG + Chr3:48530205-48530224 None:intergenic 50.0%
TATTCAGCGGGCGTGGTTAT+TGG - Chr3:48531502-48531521 MsG0380013967.01.T01:CDS 50.0%
TGTACCAGGTGCTAAAGCGT+GGG + Chr3:48530911-48530930 None:intergenic 50.0%
TTGTACCAGGTGCTAAAGCG+TGG + Chr3:48530912-48530931 None:intergenic 50.0%
TTGTGGCAATTCCACCCAGA+AGG + Chr3:48531641-48531660 None:intergenic 50.0%
! ATGTTTCTATTCAGCGGGCG+TGG - Chr3:48531495-48531514 MsG0380013967.01.T01:CDS 50.0%
! GGTTTTCGGTTCCCTTGTGA+TGG - Chr3:48531150-48531169 MsG0380013967.01.T01:CDS 50.0%
!! CTTGTGATGGACCTGGAAGA+GGG - Chr3:48531163-48531182 MsG0380013967.01.T01:CDS 50.0%
!! GCAAGCACCAGTTTGACTTG+GGG - Chr3:48530949-48530968 MsG0380013967.01.T01:CDS 50.0%
!! TTGTGATGGACCTGGAAGAG+GGG - Chr3:48531164-48531183 MsG0380013967.01.T01:CDS 50.0%
AGCCATAGACCCCCAGTTAG+TGG + Chr3:48530292-48530311 None:intergenic 55.0%
ATCGCGGAGCCACCCATTAA+TGG + Chr3:48531370-48531389 None:intergenic 55.0%
ATGGGGTCTCTTTCTTGGGC+GGG - Chr3:48530061-48530080 MsG0380013967.01.T01:CDS 55.0%
CCTCTTCCAGGTCCATCACA+AGG + Chr3:48531165-48531184 None:intergenic 55.0%
CCTGCGCCCATAAGAAATCG+CGG + Chr3:48531386-48531405 None:intergenic 55.0%
CGGTGGTGATTTAGTGGCAG+TGG - Chr3:48530972-48530991 MsG0380013967.01.T01:CDS 55.0%
CGTGATCCCAAGCGGATACT+TGG + Chr3:48531197-48531216 None:intergenic 55.0%
GGACATGCCAAGTATCCGCT+TGG - Chr3:48531187-48531206 MsG0380013967.01.T01:CDS 55.0%
GGGTGGAATTGCCACAACGT+GGG - Chr3:48531644-48531663 MsG0380013967.01.T01:CDS 55.0%
GGTGATTTAGTGGCAGTGGG+CGG - Chr3:48530976-48530995 MsG0380013967.01.T01:CDS 55.0%
GGTGGCTCCGCGATTTCTTA+TGG - Chr3:48531376-48531395 MsG0380013967.01.T01:CDS 55.0%
TGGGTGGAATTGCCACAACG+TGG - Chr3:48531643-48531662 MsG0380013967.01.T01:CDS 55.0%
TTGGGGCGGTGGTGATTTAG+TGG - Chr3:48530966-48530985 MsG0380013967.01.T01:CDS 55.0%
!! AAGGCTCTAGGCTGAGTAGC+AGG + Chr3:48531579-48531598 None:intergenic 55.0%
!! AGCACCAGTTTGACTTGGGG+CGG - Chr3:48530952-48530971 MsG0380013967.01.T01:CDS 55.0%
!! CCTTGTGATGGACCTGGAAG+AGG - Chr3:48531162-48531181 MsG0380013967.01.T01:CDS 55.0%
!! TGGTGCTTGCTGTTGCACCA+GGG + Chr3:48530939-48530958 None:intergenic 55.0%
!! TGTGATGGACCTGGAAGAGG+GGG - Chr3:48531165-48531184 MsG0380013967.01.T01:CDS 55.0%
ACCACCGCCCCAAGTCAAAC+TGG + Chr3:48530959-48530978 None:intergenic 60.0%
CCGCGATTTCTTATGGGCGC+AGG - Chr3:48531383-48531402 MsG0380013967.01.T01:CDS 60.0%
TGGGGTCTCTTTCTTGGGCG+GGG - Chr3:48530062-48530081 MsG0380013967.01.T01:CDS 60.0%
! AGGGCGCCCTAAAGCACTCA+TGG + Chr3:48530824-48530843 None:intergenic 60.0%
!! ACCAGTTTGACTTGGGGCGG+TGG - Chr3:48530955-48530974 MsG0380013967.01.T01:CDS 60.0%
!! CGGTTCCCTTGTGATGGACC+TGG - Chr3:48531156-48531175 MsG0380013967.01.T01:CDS 60.0%
!! CTGGTGCTTGCTGTTGCACC+AGG + Chr3:48530940-48530959 None:intergenic 60.0%
!! GGTGCTTGCTGTTGCACCAG+GGG + Chr3:48530938-48530957 None:intergenic 60.0%
!! GTGATGGACCTGGAAGAGGG+GGG - Chr3:48531166-48531185 MsG0380013967.01.T01:CDS 60.0%
CTTATGGGCGCAGGCATCCC+AGG - Chr3:48531392-48531411 MsG0380013967.01.T01:CDS 65.0%
TGGCATGTCCCCCCTCTTCC+AGG + Chr3:48531177-48531196 None:intergenic 65.0%
GCACCAGGGGCCGTTGTACC+AGG + Chr3:48530925-48530944 None:intergenic 70.0%
GCACCTGGTACAACGGCCCC+TGG - Chr3:48530919-48530938 MsG0380013967.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 48530061 48531701 48530061 ID=MsG0380013967.01;Name=MsG0380013967.01
Chr3 mRNA 48530061 48531701 48530061 ID=MsG0380013967.01.T01;Parent=MsG0380013967.01;Name=MsG0380013967.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|546
Chr3 exon 48530061 48531701 48530061 ID=MsG0380013967.01.T01:exon:9210;Parent=MsG0380013967.01.T01
Chr3 CDS 48530061 48531701 48530061 ID=MsG0380013967.01.T01:cds;Parent=MsG0380013967.01.T01
Gene Sequence

>MsG0380013967.01.T01

ATGGGGTCTCTTTCTTGGGCGGGGCATCAAGTACATGTATCTTTACCAATTAACCAATTTCTAAATGCTGGAGTAGATCCCAAAGAGATCCCACTTCCTCATGAATTTATCTTGAATCGGGATCTTTTGGCTCAACTTTATCCAAGTTTTGCCGAAGGAGCAACCCCATTTTTTACCTTGAATTGGTCAAAATACGCGGACTTTCTTACTTTTCGTGGAGGATTAGATCCACTAACTGGGGGTCTATGGCTGACCGATATTGCACATCATCATTTAGCTATTGCAATTCTTTTTCTCATTGCCGGTCATATGTATAGAACTAATTGGGGTATTGGTCATGGTATAAAAGATATTTTAGAGGCCCATAAAGGTCCATTTACAGGCCAAGGTCATAAAGGTCTATATGAGATCCTAACAACGTCATGGCATGCTCAATTATCTATTAACCTAGCTATGTTAGGCTCTTTGACCATTATTGTAGCTCACCATATGTATGCTATGCCTCCTTATCCATACCTAGCTACTGACTATGGGACACAACTGTCATTGTTCACACATCACATGTGGATTGGGGGATTTCTCATAGTTGGTGCTGCTGCACATGCAGCCATTTTTATGGTAAGAGACTATGATCCAACTACTCGATACAACGATCTATTAGATCGTATTCTTAGACATCGCGATGCAATCATATCACATCTCAACTGGGTGTGTATATTTTTAGGCTTTCACAGTTTTGGTTTGTATATTCATAATGATACCATGAGTGCTTTAGGGCGCCCTCAAGATATGTTTTCTGATACCGCTATACAATTACAACCTGTCTTTGCTCAATGGATACAAAATACCCACGCTTTAGCACCTGGTACAACGGCCCCTGGTGCAACAGCAAGCACCAGTTTGACTTGGGGCGGTGGTGATTTAGTGGCAGTGGGCGGCAAAGTAGCTTTGTTACCTATTCCATTAGGAACTGCAGATTTTTTGGTACATCATATTCATGCATTTACAATTCACGTGACGGTATTGATACTCCTAAAAGGAGTTCTATTTGCTCGTAGCTCACGATTGATACCGGATAAAGCAAATCTTGGTTTTCGGTTCCCTTGTGATGGACCTGGAAGAGGGGGGACATGCCAAGTATCCGCTTGGGATCACGTCTTCTTAGGATTATTTTGGATGTACAATTCAATTTCTGTAGTAATATTCCATTTCAGTTGGAAAATGCAGTCAGATGTTTGGGGTAGTATAAATGATCAAGGAGTAGTAACTCATATCACAGGAGGAAACTTTGCGCAGAGTTCGATTACCATTAATGGGTGGCTCCGCGATTTCTTATGGGCGCAGGCATCCCAGGTAATTCAGTCTTATGGTTCCTCATTATCTGCATATGGTCTTTTTTTCTTAGGTGCCCATTTTGTATGGGCTTTTAGTTTAATGTTTCTATTCAGCGGGCGTGGTTATTGGCAAGAACTTATTGAATCCATCGTTTGGGCTCATAATAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTGTACAGGGACGTGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAACGTGGGCATTCTTCTTAGCAAGAATTATTGCAGTAGGATAA

Protein sequence

>MsG0380013967.01.T01

MGSLSWAGHQVHVSLPINQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFFTLNWSKYADFLTFRGGLDPLTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIKDILEAHKGPFTGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHMYAMPPYPYLATDYGTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPTTRYNDLLDRILRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWIQNTHALAPGTTAPGATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSINDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARIIAVG*