AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014214.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014214.01.T01 MTR_3g053020 97.897 428 9 0 1 428 1 428 0.0 872
MsG0380014214.01.T01 MTR_5g093390 79.909 438 78 5 1 428 2 439 0.0 708
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014214.01.T01 AT4G26850 68.694 444 121 7 1 428 1 442 0.0 609
MsG0380014214.01.T01 AT5G55120 73.858 394 97 2 1 391 2 392 0.0 606

Find 176 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAATTCAGGCATATTATT+TGG 0.159533 3:-51446425 MsG0380014214.01.T01:intron
TTTCACACCACCATTTAATT+TGG 0.178763 3:+51446360 None:intergenic
CAATTCTTCAACACCCTTTC+GGG 0.188952 3:+51448539 None:intergenic
CGGTGAAAAGAGAGGAAATT+TGG 0.203661 3:+51448622 None:intergenic
AACTTTAGTGAAATTGAATT+TGG 0.227080 3:+51447139 None:intergenic
TAATTGCTCTTTGGAGCTTT+AGG 0.240830 3:-51445180 MsG0380014214.01.T01:three_prime_UTR
TCTGATCTCCTCTTTCTTGC+TGG 0.250262 3:-51448375 MsG0380014214.01.T01:five_prime_UTR
GGAACGCCCTGTGGCTTTCT+TGG 0.262977 3:-51447861 MsG0380014214.01.T01:CDS
TTGTAACCCAATCGGAAATA+TGG 0.278287 3:+51446617 None:intergenic
TTGTTGGTGGTAGGTGATTC+CGG 0.284474 3:-51447261 MsG0380014214.01.T01:intron
AAGAAGATTGCCAAATTAAA+TGG 0.286112 3:-51446370 MsG0380014214.01.T01:CDS
CAGGTTAGTCCTATCGAATA+TGG 0.292372 3:-51446740 MsG0380014214.01.T01:CDS
AGAAGTGCGTGCTGAGCTTC+TGG 0.300654 3:-51445687 MsG0380014214.01.T01:CDS
TTCTTGGACTCGATTATTCT+TGG 0.312041 3:-51447845 MsG0380014214.01.T01:CDS
CGATTGGGTTACAACAGCTT+GGG 0.321121 3:-51446608 MsG0380014214.01.T01:CDS
ACAATTCTTCAACACCCTTT+CGG 0.326186 3:+51448538 None:intergenic
TTGATGTAATAATTGCTCTT+TGG 0.326679 3:-51445189 MsG0380014214.01.T01:three_prime_UTR
GCTTGAATATTATTGCTTCA+TGG 0.329553 3:-51445226 MsG0380014214.01.T01:three_prime_UTR
AGAGAAGCAAGATTGGGAAT+TGG 0.336652 3:+51448659 None:intergenic
TATTAATCATCTTCACTTCC+AGG 0.342444 3:-51446573 MsG0380014214.01.T01:intron
GATGAGGATGCTCCTGTTAA+TGG 0.346887 3:-51448102 MsG0380014214.01.T01:CDS
AATTCGCGTGATCGATCCTT+TGG 0.351058 3:+51446678 None:intergenic
CATCACAGCTAGCCTCAAAT+TGG 0.351329 3:+51447096 None:intergenic
GAGAAGCAAGATTGGGAATT+GGG 0.351440 3:+51448660 None:intergenic
AGAAGATGTTGAGTATTAAG+AGG 0.359887 3:-51448155 MsG0380014214.01.T01:exon
CTCAAGAGTTGTTGTATTCA+AGG 0.361415 3:-51448063 MsG0380014214.01.T01:intron
TTAGTAGAAGCCTTCTCAAT+TGG 0.368160 3:+51446391 None:intergenic
GAGGAAATTTGGGAGCTTTG+TGG 0.379423 3:+51448633 None:intergenic
ATTATATTATACAATTCAAA+AGG 0.383292 3:+51445140 None:intergenic
TCAACATCAATTGGCGCGTC+GGG 0.383384 3:+51447056 None:intergenic
TGTTGGTGGTAGGTGATTCC+GGG 0.384951 3:-51447260 MsG0380014214.01.T01:intron
AAATTCAATTTCACTAAAGT+TGG 0.387313 3:-51447137 MsG0380014214.01.T01:CDS
CGTCAGAGGTCTTGTCTTTG+AGG 0.387565 3:-51446314 MsG0380014214.01.T01:CDS
TTCCTTTGTATGGTTACAAA+AGG 0.388385 3:-51447919 MsG0380014214.01.T01:CDS
TTTCGTCCACAACCATTAAC+AGG 0.391724 3:+51448090 None:intergenic
TTGGCGCGTCGGGAAAGAAT+TGG 0.399612 3:+51447066 None:intergenic
GGAGAATTCTCAACATCAAT+TGG 0.401473 3:+51447047 None:intergenic
CCGTCGTTGTTCACGACGTA+AGG 0.402172 3:-51448469 MsG0380014214.01.T01:five_prime_UTR
CAAGAACTTGATAGAATAAG+TGG 0.403210 3:-51445284 MsG0380014214.01.T01:three_prime_UTR
GTGGAGAAGAGAAGCAAGAT+TGG 0.403420 3:+51448652 None:intergenic
GAGGCGAAGCTTCCTTTGTA+TGG 0.404392 3:-51447929 MsG0380014214.01.T01:CDS
TTGAATTTGGTTTCATCAAA+GGG 0.405392 3:+51447152 None:intergenic
CCTTCACCACACGGCGGGCG+TGG 0.406567 3:-51448426 MsG0380014214.01.T01:five_prime_UTR
ATCCGATAAACATACATTGA+TGG 0.407834 3:+51447013 None:intergenic
CTCCTCTTTCTTGCTGGTGG+TGG 0.411563 3:-51448369 MsG0380014214.01.T01:five_prime_UTR
TTCTCAATTGTTTCTCAAGT+GGG 0.417319 3:-51448249 MsG0380014214.01.T01:five_prime_UTR
GTCAGAGGTCTTGTCTTTGA+GGG 0.421271 3:-51446313 MsG0380014214.01.T01:CDS
AGAGATCCTATTCCAATTTG+AGG 0.422058 3:-51447108 MsG0380014214.01.T01:CDS
GGAAATCCATATTTCCGATT+GGG 0.424274 3:-51446623 MsG0380014214.01.T01:CDS
ATTCGCGTGATCGATCCTTT+GGG 0.424300 3:+51446679 None:intergenic
AGAATGTTCTACACACGAAA+AGG 0.427097 3:+51448578 None:intergenic
CCACGCCCGCCGTGTGGTGA+AGG 0.431428 3:+51448426 None:intergenic
ATTGAATTTGGTTTCATCAA+AGG 0.434141 3:+51447151 None:intergenic
GCTGGAGAACCTTGTCAACT+TGG 0.436753 3:+51447174 None:intergenic
TGGCGCGTCGGGAAAGAATT+GGG 0.439522 3:+51447067 None:intergenic
CAATTTGAGGCTAGCTGTGA+TGG 0.440428 3:-51447095 MsG0380014214.01.T01:CDS
TCCTTTGTATGGTTACAAAA+GGG 0.444951 3:-51447918 MsG0380014214.01.T01:CDS
CGGCTATTCAAAGGGTTTCA+CGG 0.453222 3:-51448506 MsG0380014214.01.T01:five_prime_UTR
CCGATTGGGTTACAACAGCT+TGG 0.455392 3:-51446609 MsG0380014214.01.T01:CDS
CTCAACATCAATTGGCGCGT+CGG 0.456530 3:+51447055 None:intergenic
GATTCAGACCTTGGTTTCAC+AGG 0.457731 3:+51447391 None:intergenic
CTTTGAGGGTGGTCATGCAC+TGG 0.459659 3:-51446299 MsG0380014214.01.T01:CDS
TTTCTCAATTGTTTCTCAAG+TGG 0.460672 3:-51448250 MsG0380014214.01.T01:five_prime_UTR
GGTGAAAAGAGAGGAAATTT+GGG 0.461011 3:+51448623 None:intergenic
TAGGTGATTCCGGGTGAGTA+TGG 0.461202 3:-51447251 MsG0380014214.01.T01:CDS
TGGAGAAGAGAAGCAAGATT+GGG 0.461664 3:+51448653 None:intergenic
AGCTAGCCTCAAATTGGAAT+AGG 0.461916 3:+51447102 None:intergenic
GAATGTTCTACACACGAAAA+GGG 0.462469 3:+51448579 None:intergenic
GTTGTGTTGAAGGCAGATAC+AGG 0.468738 3:+51446249 None:intergenic
GGCAAGAAGCTCCCGAGCAT+TGG 0.469589 3:+51445580 None:intergenic
ATTCAGTTGGTCTCTTCTTG+AGG 0.471371 3:+51447198 None:intergenic
AAGGTATGTTGTTGTGTTGA+AGG 0.473926 3:+51446239 None:intergenic
GGGAATTGGGTGTGAGAGAA+GGG 0.476497 3:+51448673 None:intergenic
CCACTGATTTCCCACACAGC+TGG 0.476673 3:+51445650 None:intergenic
CTTCACATGGCAGCTGAAGC+AGG 0.477098 3:-51446644 MsG0380014214.01.T01:CDS
GGTTGTTTCGAATTATCAAA+AGG 0.477503 3:-51448124 MsG0380014214.01.T01:CDS
CACCACCACCAGCAAGAAAG+AGG 0.478145 3:+51448367 None:intergenic
CGTGTGTAGAACATTCTTGT+GGG 0.487300 3:-51448572 MsG0380014214.01.T01:five_prime_UTR
CTTGTCTCCCATTGCATGCA+AGG 0.487931 3:-51447882 MsG0380014214.01.T01:CDS
TGGGAATTGGGTGTGAGAGA+AGG 0.489016 3:+51448672 None:intergenic
GGGCGTTCCTTGCATGCAAT+GGG 0.491885 3:+51447875 None:intergenic
CGTGGTGCTCTTCCTTCTGA+AGG 0.493925 3:-51448408 MsG0380014214.01.T01:five_prime_UTR
TCAGAAATAAGAACATTGTA+AGG 0.494156 3:+51446220 None:intergenic
TGCGAACCAGCCACCATAGC+AGG 0.498039 3:+51445428 None:intergenic
TCGTGTGTAGAACATTCTTG+TGG 0.502830 3:-51448573 MsG0380014214.01.T01:five_prime_UTR
CAATTGTTTCTCAAGTGGGT+TGG 0.506793 3:-51448245 MsG0380014214.01.T01:five_prime_UTR
ATTTGGTTTCATCAAAGGGC+TGG 0.510494 3:+51447156 None:intergenic
ACATTGATGGCAACAAAGCT+TGG 0.511324 3:+51447026 None:intergenic
AATCATCACGGCTATTCAAA+GGG 0.511774 3:-51448514 MsG0380014214.01.T01:five_prime_UTR
AAATCATCACGGCTATTCAA+AGG 0.513020 3:-51448515 MsG0380014214.01.T01:five_prime_UTR
AGGGCGTTCCTTGCATGCAA+TGG 0.513889 3:+51447874 None:intergenic
GATGCTCCTGTTAATGGTTG+TGG 0.514716 3:-51448096 MsG0380014214.01.T01:CDS
CTCAAAGACAAGACCTCTGA+CGG 0.516269 3:+51446315 None:intergenic
AGGCATCTGAAGCCAATGCT+CGG 0.516305 3:-51445592 MsG0380014214.01.T01:CDS
AGGTTAGTCCTATCGAATAT+GGG 0.517158 3:-51446739 MsG0380014214.01.T01:CDS
ACTAAGCCTGCTATGGTGGC+TGG 0.519817 3:-51445434 MsG0380014214.01.T01:CDS
CCAAGCTGTTGTAACCCAAT+CGG 0.521064 3:+51446609 None:intergenic
GAAGCCTTCTCAATTGGAAA+AGG 0.522050 3:+51446397 None:intergenic
AGGAAATCCATATTTCCGAT+TGG 0.522692 3:-51446624 MsG0380014214.01.T01:CDS
AATTTGAGGCTAGCTGTGAT+GGG 0.523574 3:-51447094 MsG0380014214.01.T01:CDS
TTCGAATTATCAAAAGGATG+AGG 0.523778 3:-51448118 MsG0380014214.01.T01:CDS
ATGTTCTTATTTCTGACTGC+GGG 0.524095 3:-51446213 MsG0380014214.01.T01:CDS
ATCGAGTCCAAGAAAGCCAC+AGG 0.524617 3:+51447854 None:intergenic
GGACTCGATTATTCTTGGAC+AGG 0.524632 3:-51447840 MsG0380014214.01.T01:intron
CCCGCCGTGTGGTGAAGGGT+TGG 0.525167 3:+51448431 None:intergenic
GGCATCTGAAGCCAATGCTC+GGG 0.525201 3:-51445591 MsG0380014214.01.T01:CDS
CACGCCCGCCGTGTGGTGAA+GGG 0.526690 3:+51448427 None:intergenic
GAAGATGTTGAGTATTAAGA+GGG 0.535650 3:-51448154 MsG0380014214.01.T01:exon
GAGTATTAAGAGGGTTCCTA+CGG 0.535658 3:-51448145 MsG0380014214.01.T01:CDS
GATTGGGTTACAACAGCTTG+GGG 0.540251 3:-51446607 MsG0380014214.01.T01:CDS
GCAAGAAAGAGGAGATCAGA+AGG 0.541103 3:+51448378 None:intergenic
GATCTCCTCTTTCTTGCTGG+TGG 0.541502 3:-51448372 MsG0380014214.01.T01:five_prime_UTR
TGCTCGGGAGCTTCTTGCCG+AGG 0.545020 3:-51445576 MsG0380014214.01.T01:CDS
TACGCAGAGAAACAAGCTCT+TGG 0.546314 3:-51445710 MsG0380014214.01.T01:CDS
TTATATTATACAATTCAAAA+GGG 0.547943 3:+51445141 None:intergenic
CTCAAACACTAAGCCTGCTA+TGG 0.552740 3:-51445441 MsG0380014214.01.T01:CDS
GGGGTGTTTCAAACCCGAAA+GGG 0.552877 3:-51448552 MsG0380014214.01.T01:five_prime_UTR
GTGGACACATGGTGTTAAAG+AGG 0.553568 3:-51445631 MsG0380014214.01.T01:CDS
CCAACCCTTCACCACACGGC+GGG 0.559859 3:-51448431 MsG0380014214.01.T01:five_prime_UTR
GCAGATACAGGCTTCAGAAA+CGG 0.560153 3:+51446261 None:intergenic
AAACACTAAGCCTGCTATGG+TGG 0.560336 3:-51445438 MsG0380014214.01.T01:CDS
TTGTCAACTTGGAATTCAGT+TGG 0.561917 3:+51447185 None:intergenic
TTACAAAAGGGGTGAGGCAA+AGG 0.563078 3:-51447906 MsG0380014214.01.T01:CDS
GGCTTGTATTTGATATCTAG+TGG 0.566165 3:-51445263 MsG0380014214.01.T01:three_prime_UTR
CCTTTGTATGGTTACAAAAG+GGG 0.566646 3:-51447917 MsG0380014214.01.T01:CDS
CTTACGTCGTGAACAACGAC+GGG 0.567342 3:+51448470 None:intergenic
TATTATACAATTCAAAAGGG+TGG 0.572306 3:+51445144 None:intergenic
GAAGTGAAGATGATTAATAG+TGG 0.576187 3:+51446577 None:intergenic
CGTCGTTGTTCACGACGTAA+GGG 0.576674 3:-51448468 MsG0380014214.01.T01:five_prime_UTR
TTCGCGTGATCGATCCTTTG+GGG 0.586652 3:+51446680 None:intergenic
CGCAAGTTAATCCAGCTGTG+TGG 0.587802 3:-51445661 MsG0380014214.01.T01:CDS
GTTCGACCCAGTTCAAGAAA+CGG 0.587959 3:+51448602 None:intergenic
TTCTTATTTCTGACTGCGGG+AGG 0.588058 3:-51446210 MsG0380014214.01.T01:CDS
TCAACTTCCTCTAGACATTG+AGG 0.588708 3:+51445473 None:intergenic
TTCATTGCTCAGCTGAACGA+GGG 0.589336 3:-51447227 MsG0380014214.01.T01:CDS
CATGGTGTTAAAGAGGAAGA+AGG 0.590993 3:-51445624 MsG0380014214.01.T01:CDS
TGGGGTGTTTCAAACCCGAA+AGG 0.594789 3:-51448553 MsG0380014214.01.T01:five_prime_UTR
AGGTTTCTCTCTCTAAAGAG+AGG 0.595509 3:-51445556 MsG0380014214.01.T01:CDS
CTCTTTAGAGAGAGAAACCT+CGG 0.595723 3:+51445559 None:intergenic
GCAAGTTAATCCAGCTGTGT+GGG 0.599673 3:-51445660 MsG0380014214.01.T01:CDS
GGCAAACACTCGAAAATTCG+AGG 0.606853 3:+51446701 None:intergenic
GTATGGTTACAAAAGGGGTG+AGG 0.607885 3:-51447912 MsG0380014214.01.T01:CDS
GGTGCTCTTCCTTCTGAAGG+TGG 0.616301 3:-51448405 MsG0380014214.01.T01:five_prime_UTR
AGAGGTCTTGTCTTTGAGGG+TGG 0.617352 3:-51446310 MsG0380014214.01.T01:CDS
TTTCATTGCTCAGCTGAACG+AGG 0.617448 3:-51447228 MsG0380014214.01.T01:CDS
TGAAGAATTGTAAATCATCA+CGG 0.618052 3:-51448526 MsG0380014214.01.T01:five_prime_UTR
TCAAGAAACGGTGAAAAGAG+AGG 0.620171 3:+51448614 None:intergenic
CCAGCTGTGTGGGAAATCAG+TGG 0.621970 3:-51445650 MsG0380014214.01.T01:CDS
GAAGGGCTACCACCTTCAGA+AGG 0.625898 3:+51448396 None:intergenic
AATGTTCTACACACGAAAAG+GGG 0.627197 3:+51448580 None:intergenic
TCAAAGACAAGACCTCTGAC+GGG 0.628405 3:+51446316 None:intergenic
AACTGAATTCCAAGTTGACA+AGG 0.629423 3:-51447183 MsG0380014214.01.T01:CDS
TTGTTTGTTACTGAAGAACA+AGG 0.630835 3:+51445399 None:intergenic
GAGGAAGAAGGACTTTGATG+AGG 0.633378 3:-51445612 MsG0380014214.01.T01:CDS
GAGACCAACCCTTCACCACA+CGG 0.634867 3:-51448435 MsG0380014214.01.T01:five_prime_UTR
TTGTTGAACTATCCCGTCAG+AGG 0.636208 3:-51446328 MsG0380014214.01.T01:CDS
AAGATTGCCAAATTAAATGG+TGG 0.637560 3:-51446367 MsG0380014214.01.T01:CDS
AATGTTCTTATTTCTGACTG+CGG 0.643366 3:-51446214 MsG0380014214.01.T01:CDS
TGATAATTCGAAACAACCGT+AGG 0.645029 3:+51448129 None:intergenic
CACAGGCAGTAACATCGTAA+CGG 0.645185 3:+51447408 None:intergenic
CCTTACGTCGTGAACAACGA+CGG 0.647374 3:+51448469 None:intergenic
GTGTGTAGAACATTCTTGTG+GGG 0.653722 3:-51448571 MsG0380014214.01.T01:five_prime_UTR
GCAATGAAACCATACTCACC+CGG 0.655955 3:+51447242 None:intergenic
TGCATGCAAGGAACGCCCTG+TGG 0.656628 3:-51447870 MsG0380014214.01.T01:CDS
TGTTACTGCCTGTGAAACCA+AGG 0.656701 3:-51447399 MsG0380014214.01.T01:intron
AGCACATGCCCATATTCGAT+AGG 0.657099 3:+51446731 None:intergenic
CAAGAAAGAGGAGATCAGAA+GGG 0.657258 3:+51448379 None:intergenic
GTGGGAAATCAGTGGACACA+TGG 0.657940 3:-51445642 MsG0380014214.01.T01:CDS
AGAGCACCACGCCCGCCGTG+TGG 0.660679 3:+51448420 None:intergenic
TTGTTCTTCAGTAACAAACA+AGG 0.663734 3:-51445397 MsG0380014214.01.T01:exon
TGTCACACCTCAATGTCTAG+AGG 0.670162 3:-51445480 MsG0380014214.01.T01:CDS
ATTTGAGGCTAGCTGTGATG+GGG 0.674110 3:-51447093 MsG0380014214.01.T01:CDS
ATTGGGTTACAACAGCTTGG+GGG 0.681884 3:-51446606 MsG0380014214.01.T01:CDS
TGGGAGGATCGCATGCAGAG+AGG 0.711970 3:-51447437 MsG0380014214.01.T01:CDS
ACCAACCCTTCACCACACGG+CGG 0.728967 3:-51448432 MsG0380014214.01.T01:five_prime_UTR
TCGAGTCCAAGAAAGCCACA+GGG 0.731554 3:+51447855 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATTATACAATTCAAA+AGG + Chr3:51448716-51448735 None:intergenic 10.0%
!! TTATATTATACAATTCAAAA+GGG + Chr3:51448715-51448734 None:intergenic 10.0%
!!! AGTTTTGATTATTTATTTAT+TGG - Chr3:51446347-51446366 MsG0380014214.01.T01:CDS 10.0%
!!! ATAAGCAAAATTTTAATATT+TGG - Chr3:51447710-51447729 MsG0380014214.01.T01:intron 10.0%
!! AATAATCAATGTAAACAATA+AGG + Chr3:51447345-51447364 None:intergenic 15.0%
!! GTTTATATTATAATTACTAG+TGG - Chr3:51446541-51446560 MsG0380014214.01.T01:intron 15.0%
!! TTTAAATTGCAGTATTTATT+CGG - Chr3:51446904-51446923 MsG0380014214.01.T01:intron 15.0%
!!! TAATTGATTCTTAATTTGTT+TGG + Chr3:51447314-51447333 None:intergenic 15.0%
!!! TTATTGTTTACATTGATTAT+TGG - Chr3:51447344-51447363 MsG0380014214.01.T01:intron 15.0%
!!! TTGTTTTTGTTTTTGAATTA+TGG - Chr3:51445855-51445874 MsG0380014214.01.T01:intron 15.0%
!!! TTTGAGTTTTGAATTTTTTA+TGG - Chr3:51446388-51446407 MsG0380014214.01.T01:CDS 15.0%
!! AAATTCAATTTCACTAAAGT+TGG - Chr3:51446716-51446735 MsG0380014214.01.T01:CDS 20.0%
!! AACTTTAGTGAAATTGAATT+TGG + Chr3:51446717-51446736 None:intergenic 20.0%
!! AATAAACTATGTAGTACAAA+TGG + Chr3:51447926-51447945 None:intergenic 20.0%
!! ATATTCTGATACTTCATATT+GGG - Chr3:51446929-51446948 MsG0380014214.01.T01:intron 20.0%
!! TAAAAAATTTCGGATTATCA+AGG + Chr3:51447750-51447769 None:intergenic 20.0%
!! TATATTCTGATACTTCATAT+TGG - Chr3:51446928-51446947 MsG0380014214.01.T01:intron 20.0%
!! TATATTTATCTTTGTCATGT+TGG - Chr3:51446266-51446285 MsG0380014214.01.T01:CDS 20.0%
!!! ATAGTGATTTTAATTTACTG+TGG - Chr3:51448496-51448515 MsG0380014214.01.T01:five_prime_UTR 20.0%
!!! ATCCGAAATTTTTTAATTTG+TGG - Chr3:51447755-51447774 MsG0380014214.01.T01:intron 20.0%
!!! TAATTTAAAACAATGCTTGA+TGG - Chr3:51447039-51447058 MsG0380014214.01.T01:CDS 20.0%
!!! TCCGAAATTTTTTAATTTGT+GGG - Chr3:51447756-51447775 MsG0380014214.01.T01:intron 20.0%
!!! TGTTTGTGATTTGATTTTTA+AGG - Chr3:51445824-51445843 MsG0380014214.01.T01:intron 20.0%
!!! TTTTGTTGTTGTTTTGATTT+TGG - Chr3:51445651-51445670 MsG0380014214.01.T01:CDS 20.0%
! AAGAAGATTGCCAAATTAAA+TGG - Chr3:51447483-51447502 MsG0380014214.01.T01:intron 25.0%
! AATCAATGTAAACAATAAGG+TGG + Chr3:51447342-51447361 None:intergenic 25.0%
! ACAAATTCAGGCATATTATT+TGG - Chr3:51447428-51447447 MsG0380014214.01.T01:CDS 25.0%
! CATAACCATCAATGATATAT+CGG + Chr3:51446323-51446342 None:intergenic 25.0%
! CCCCACAAATTAAAAAATTT+CGG + Chr3:51447760-51447779 None:intergenic 25.0%
! TACAAATGGTTGTCAAATAA+CGG + Chr3:51447912-51447931 None:intergenic 25.0%
! TATTATACAATTCAAAAGGG+TGG + Chr3:51448712-51448731 None:intergenic 25.0%
! TATTCTGATACTTCATATTG+GGG - Chr3:51446930-51446949 MsG0380014214.01.T01:intron 25.0%
! TCAGAAATAAGAACATTGTA+AGG + Chr3:51447636-51447655 None:intergenic 25.0%
! TGAAGAATTGTAAATCATCA+CGG - Chr3:51445327-51445346 MsG0380014214.01.T01:three_prime_UTR 25.0%
! TGTTTATTTACTCGATTAAC+AGG - Chr3:51447094-51447113 MsG0380014214.01.T01:CDS 25.0%
! TTGATGTAATAATTGCTCTT+TGG - Chr3:51448664-51448683 MsG0380014214.01.T01:five_prime_UTR 25.0%
!! AAATATTGATTGTGCAATCA+AGG + Chr3:51448092-51448111 None:intergenic 25.0%
!! AGGTAGTTATCGAATTTTTA+TGG - Chr3:51446033-51446052 MsG0380014214.01.T01:intron 25.0%
!! ATTGAATTTGGTTTCATCAA+AGG + Chr3:51446705-51446724 None:intergenic 25.0%
!! TGTTCTTCTTTTTCTCTTTT+AGG - Chr3:51445507-51445526 MsG0380014214.01.T01:CDS 25.0%
!! TTCTGATTTTTGACAAATTC+AGG - Chr3:51447416-51447435 MsG0380014214.01.T01:CDS 25.0%
!! TTGAATTTGGTTTCATCAAA+GGG + Chr3:51446704-51446723 None:intergenic 25.0%
!!! ATCGATTTTTTCAGATGTAA+TGG + Chr3:51448354-51448373 None:intergenic 25.0%
!!! ATTATAATTACTAGTGGACT+TGG - Chr3:51446547-51446566 MsG0380014214.01.T01:intron 25.0%
!!! CACTGTTTTTCAATTTGTAT+TGG + Chr3:51448122-51448141 None:intergenic 25.0%
!!! CCGAAATTTTTTAATTTGTG+GGG - Chr3:51447757-51447776 MsG0380014214.01.T01:intron 25.0%
!!! CTTTTAGGTTTTAGTTCTTT+AGG - Chr3:51445522-51445541 MsG0380014214.01.T01:CDS 25.0%
!!! TGAATTTTTTATGGTGTAGT+GGG - Chr3:51446397-51446416 MsG0380014214.01.T01:CDS 25.0%
!!! TGTGTTTTTTTGGTTAATAG+AGG - Chr3:51445905-51445924 MsG0380014214.01.T01:intron 25.0%
!!! TTGAATTTTTTATGGTGTAG+TGG - Chr3:51446396-51446415 MsG0380014214.01.T01:CDS 25.0%
!!! TTGTTGTTGTTGTGTTTTTT+TGG - Chr3:51445895-51445914 MsG0380014214.01.T01:intron 25.0%
AAGATTGCCAAATTAAATGG+TGG - Chr3:51447486-51447505 MsG0380014214.01.T01:intron 30.0%
AAGATTTCAAGCAACTAAAG+AGG + Chr3:51448066-51448085 None:intergenic 30.0%
ACTAGTGTTATCAATATTCG+CGG - Chr3:51447842-51447861 MsG0380014214.01.T01:CDS 30.0%
AGAAGATGTTGAGTATTAAG+AGG - Chr3:51445698-51445717 MsG0380014214.01.T01:CDS 30.0%
AGATTTCAAGCAACTAAAGA+GGG + Chr3:51448065-51448084 None:intergenic 30.0%
ATCAAGGATTACGATTTAAG+AGG + Chr3:51447783-51447802 None:intergenic 30.0%
ATCCGATAAACATACATTGA+TGG + Chr3:51446843-51446862 None:intergenic 30.0%
ATTTGTTTGGTTAAGATACC+TGG + Chr3:51447301-51447320 None:intergenic 30.0%
CAAGAACTTGATAGAATAAG+TGG - Chr3:51448569-51448588 MsG0380014214.01.T01:five_prime_UTR 30.0%
CTGAAAAACTAATTTACCTG+TGG + Chr3:51447684-51447703 None:intergenic 30.0%
GAAGATGTTGAGTATTAAGA+GGG - Chr3:51445699-51445718 MsG0380014214.01.T01:CDS 30.0%
GAAGTGAAGATGATTAATAG+TGG + Chr3:51447279-51447298 None:intergenic 30.0%
GCTTGAATATTATTGCTTCA+TGG - Chr3:51448627-51448646 MsG0380014214.01.T01:five_prime_UTR 30.0%
TAAATACTGGATATAGAAGC+AGG + Chr3:51447996-51448015 None:intergenic 30.0%
TATCCAGTATTTAACAACAC+TGG - Chr3:51448003-51448022 MsG0380014214.01.T01:intron 30.0%
TATTAATCATCTTCACTTCC+AGG - Chr3:51447280-51447299 MsG0380014214.01.T01:intron 30.0%
TCCTTTGTATGGTTACAAAA+GGG - Chr3:51445935-51445954 MsG0380014214.01.T01:intron 30.0%
TGCCATCAATGTATGTTTAT+CGG - Chr3:51446838-51446857 MsG0380014214.01.T01:intron 30.0%
TTCCTTTGTATGGTTACAAA+AGG - Chr3:51445934-51445953 MsG0380014214.01.T01:intron 30.0%
TTCGAATTATCAAAAGGATG+AGG - Chr3:51445735-51445754 MsG0380014214.01.T01:intron 30.0%
TTGTTCTTCAGTAACAAACA+AGG - Chr3:51448456-51448475 MsG0380014214.01.T01:five_prime_UTR 30.0%
TTTCACACCACCATTTAATT+TGG + Chr3:51447496-51447515 None:intergenic 30.0%
! ATCACGTTTTCATTCATTGT+TGG + Chr3:51447395-51447414 None:intergenic 30.0%
! CTTGATAATCTAGTCAAATG+CGG - Chr3:51447797-51447816 MsG0380014214.01.T01:intron 30.0%
! GGTTGTTTCGAATTATCAAA+AGG - Chr3:51445729-51445748 MsG0380014214.01.T01:intron 30.0%
! TTCTCAATTGTTTCTCAAGT+GGG - Chr3:51445604-51445623 MsG0380014214.01.T01:CDS 30.0%
! TTGTTTGTTACTGAAGAACA+AGG + Chr3:51448457-51448476 None:intergenic 30.0%
! TTTCTCAATTGTTTCTCAAG+TGG - Chr3:51445603-51445622 MsG0380014214.01.T01:CDS 30.0%
!! AATGTTCTTATTTCTGACTG+CGG - Chr3:51447639-51447658 MsG0380014214.01.T01:intron 30.0%
!!! ACGTTTTAGAAACTTGAGTA+TGG - Chr3:51446170-51446189 MsG0380014214.01.T01:intron 30.0%
!!! GTATGTGTGGTTTTTTTTGT+TGG - Chr3:51446576-51446595 MsG0380014214.01.T01:CDS 30.0%
!!! TGATGTTTGTTTTGTTTTGG+TGG + Chr3:51445135-51445154 None:intergenic 30.0%
!!! TGGTGATGTTTGTTTTGTTT+TGG + Chr3:51445138-51445157 None:intergenic 30.0%
AAATCATCACGGCTATTCAA+AGG - Chr3:51445338-51445357 MsG0380014214.01.T01:three_prime_UTR 35.0%
AAGGTATGTTGTTGTGTTGA+AGG + Chr3:51447617-51447636 None:intergenic 35.0%
AATCATCACGGCTATTCAAA+GGG - Chr3:51445339-51445358 MsG0380014214.01.T01:three_prime_UTR 35.0%
AATGTTCTACACACGAAAAG+GGG + Chr3:51445276-51445295 None:intergenic 35.0%
ACAATTCTTCAACACCCTTT+CGG + Chr3:51445318-51445337 None:intergenic 35.0%
ACGGTTATAGTACTATTGTG+TGG + Chr3:51447893-51447912 None:intergenic 35.0%
AGAATGTTCTACACACGAAA+AGG + Chr3:51445278-51445297 None:intergenic 35.0%
AGAGATCCTATTCCAATTTG+AGG - Chr3:51446745-51446764 MsG0380014214.01.T01:intron 35.0%
AGGAAATCCATATTTCCGAT+TGG - Chr3:51447229-51447248 MsG0380014214.01.T01:CDS 35.0%
CATTGTTGGAACACTAGATA+AGG + Chr3:51447381-51447400 None:intergenic 35.0%
CCTTTGTATGGTTACAAAAG+GGG - Chr3:51445936-51445955 MsG0380014214.01.T01:intron 35.0%
CGCATTTGACTAGATTATCA+AGG + Chr3:51447799-51447818 None:intergenic 35.0%
CTCAAGAGTTGTTGTATTCA+AGG - Chr3:51445790-51445809 MsG0380014214.01.T01:intron 35.0%
GAATGTTCTACACACGAAAA+GGG + Chr3:51445277-51445296 None:intergenic 35.0%
GGAAATCCATATTTCCGATT+GGG - Chr3:51447230-51447249 MsG0380014214.01.T01:CDS 35.0%
GGAGAATTCTCAACATCAAT+TGG + Chr3:51446809-51446828 None:intergenic 35.0%
GGATTATCAAGGATTGTAAG+AGG + Chr3:51447739-51447758 None:intergenic 35.0%
GGCTTGTATTTGATATCTAG+TGG - Chr3:51448590-51448609 MsG0380014214.01.T01:five_prime_UTR 35.0%
GGTGAAAAGAGAGGAAATTT+GGG + Chr3:51445233-51445252 None:intergenic 35.0%
TCAATATTCGCGGAAAATAG+CGG - Chr3:51447852-51447871 MsG0380014214.01.T01:CDS 35.0%
TGATAATTCGAAACAACCGT+AGG + Chr3:51445727-51445746 None:intergenic 35.0%
TTAGTAGAAGCCTTCTCAAT+TGG + Chr3:51447465-51447484 None:intergenic 35.0%
TTATCAAGGATTGTAAGAGG+CGG + Chr3:51447736-51447755 None:intergenic 35.0%
TTCTTGGACTCGATTATTCT+TGG - Chr3:51446008-51446027 MsG0380014214.01.T01:intron 35.0%
TTGTAACCCAATCGGAAATA+TGG + Chr3:51447239-51447258 None:intergenic 35.0%
TTGTCAACTTGGAATTCAGT+TGG + Chr3:51446671-51446690 None:intergenic 35.0%
TTTAACAACACTGGATGTCA+TGG - Chr3:51448012-51448031 MsG0380014214.01.T01:intron 35.0%
! AACTGAATTCCAAGTTGACA+AGG - Chr3:51446670-51446689 MsG0380014214.01.T01:CDS 35.0%
! AGGTTAGTCCTATCGAATAT+GGG - Chr3:51447114-51447133 MsG0380014214.01.T01:CDS 35.0%
! CATCCAGTGTTGTTAAATAC+TGG + Chr3:51448009-51448028 None:intergenic 35.0%
! TTTTCACCGTTTCTTGAACT+GGG - Chr3:51445245-51445264 MsG0380014214.01.T01:three_prime_UTR 35.0%
!! AAGTGCCGATATATCATTGA+TGG - Chr3:51446315-51446334 MsG0380014214.01.T01:CDS 35.0%
!! ATGTTCTTATTTCTGACTGC+GGG - Chr3:51447640-51447659 MsG0380014214.01.T01:intron 35.0%
!! TAATTGCTCTTTGGAGCTTT+AGG - Chr3:51448673-51448692 MsG0380014214.01.T01:five_prime_UTR 35.0%
!! TCTTTTTGTCGTTTAGTGCA+TGG - Chr3:51446880-51446899 MsG0380014214.01.T01:intron 35.0%
!!! ATTTTTTATGGTGTAGTGGG+AGG - Chr3:51446400-51446419 MsG0380014214.01.T01:CDS 35.0%
!!! GGATGATTTTTTGGAGTGAA+GGG + Chr3:51445162-51445181 None:intergenic 35.0%
!!! TGAGAGAAGGGATGATTTTT+TGG + Chr3:51445171-51445190 None:intergenic 35.0%
!!! TGGTTTTTTTTGTTGGTGGT+AGG - Chr3:51446583-51446602 MsG0380014214.01.T01:CDS 35.0%
!!! TGTGTGGTTTTTTTTGTTGG+TGG - Chr3:51446579-51446598 MsG0380014214.01.T01:CDS 35.0%
!!! TGTTTGTTTTGTTTTGGTGG+AGG + Chr3:51445132-51445151 None:intergenic 35.0%
AAATTGCAGCCGCAATGTAA+GGG + Chr3:51447005-51447024 None:intergenic 40.0%
AGAGAAGCAAGATTGGGAAT+TGG + Chr3:51445197-51445216 None:intergenic 40.0%
ATAGAGAGAGATTCAGACCT+TGG + Chr3:51446474-51446493 None:intergenic 40.0%
CAAGAAAGAGGAGATCAGAA+GGG + Chr3:51445477-51445496 None:intergenic 40.0%
CAATTCTTCAACACCCTTTC+GGG + Chr3:51445317-51445336 None:intergenic 40.0%
CGGTGAAAAGAGAGGAAATT+TGG + Chr3:51445234-51445253 None:intergenic 40.0%
CGTGTGTAGAACATTCTTGT+GGG - Chr3:51445281-51445300 MsG0380014214.01.T01:three_prime_UTR 40.0%
GAAGCCTTCTCAATTGGAAA+AGG + Chr3:51447459-51447478 None:intergenic 40.0%
GAGAAGCAAGATTGGGAATT+GGG + Chr3:51445196-51445215 None:intergenic 40.0%
GAGGGTTATAAGATAGTCTG+AGG + Chr3:51448047-51448066 None:intergenic 40.0%
GAGTATTAAGAGGGTTCCTA+CGG - Chr3:51445708-51445727 MsG0380014214.01.T01:CDS 40.0%
GGTCACCTATGAAGTATAGA+CGG - Chr3:51446054-51446073 MsG0380014214.01.T01:intron 40.0%
GTCAACGTCAGTGTTATGTT+CGG + Chr3:51446199-51446218 None:intergenic 40.0%
GTGTGTAGAACATTCTTGTG+GGG - Chr3:51445282-51445301 MsG0380014214.01.T01:three_prime_UTR 40.0%
GTTTGCCGTCTATACTTCAT+AGG + Chr3:51446062-51446081 None:intergenic 40.0%
TCAACTTCCTCTAGACATTG+AGG + Chr3:51448383-51448402 None:intergenic 40.0%
TCAAGAAACGGTGAAAAGAG+AGG + Chr3:51445242-51445261 None:intergenic 40.0%
TCGTGTGTAGAACATTCTTG+TGG - Chr3:51445280-51445299 MsG0380014214.01.T01:three_prime_UTR 40.0%
TGGAGAAGAGAAGCAAGATT+GGG + Chr3:51445203-51445222 None:intergenic 40.0%
TTTCGTCCACAACCATTAAC+AGG + Chr3:51445766-51445785 None:intergenic 40.0%
! AATTTGAGGCTAGCTGTGAT+GGG - Chr3:51446759-51446778 MsG0380014214.01.T01:intron 40.0%
! ACATTGATGGCAACAAAGCT+TGG + Chr3:51446830-51446849 None:intergenic 40.0%
! AGCTAGCCTCAAATTGGAAT+AGG + Chr3:51446754-51446773 None:intergenic 40.0%
! AGGTTTCTCTCTCTAAAGAG+AGG - Chr3:51448297-51448316 MsG0380014214.01.T01:five_prime_UTR 40.0%
! ATTCAGTTGGTCTCTTCTTG+AGG + Chr3:51446658-51446677 None:intergenic 40.0%
! ATTTGGTTTCATCAAAGGGC+TGG + Chr3:51446700-51446719 None:intergenic 40.0%
! CAATTGTTTCTCAAGTGGGT+TGG - Chr3:51445608-51445627 MsG0380014214.01.T01:CDS 40.0%
! CAGGTTAGTCCTATCGAATA+TGG - Chr3:51447113-51447132 MsG0380014214.01.T01:CDS 40.0%
! CATGGTGTTAAAGAGGAAGA+AGG - Chr3:51448229-51448248 MsG0380014214.01.T01:five_prime_UTR 40.0%
! CCCCTTTTGTAACCATACAA+AGG + Chr3:51445939-51445958 None:intergenic 40.0%
! CTCTTTAGAGAGAGAAACCT+CGG + Chr3:51448297-51448316 None:intergenic 40.0%
! CTTTTCACCGTTTCTTGAAC+TGG - Chr3:51445244-51445263 MsG0380014214.01.T01:three_prime_UTR 40.0%
! GCTTGATGGTTCAGTTGAAT+AGG - Chr3:51447053-51447072 MsG0380014214.01.T01:CDS 40.0%
! TCTGCCTTTTCCAATTGAGA+AGG - Chr3:51447452-51447471 MsG0380014214.01.T01:intron 40.0%
! TGATAACACTAGTGCCACTA+AGG + Chr3:51447835-51447854 None:intergenic 40.0%
! TTTTTCGCTTGCACTTCACA+TGG - Chr3:51447196-51447215 MsG0380014214.01.T01:CDS 40.0%
!! AGCAGGAAAGTGCTATATCA+TGG + Chr3:51447979-51447998 None:intergenic 40.0%
!! AGGAAAGTGCTATATCATGG+TGG + Chr3:51447976-51447995 None:intergenic 40.0%
!!! GATTTTTTGGAGTGAAGGGT+TGG + Chr3:51445158-51445177 None:intergenic 40.0%
!!! GGGATGATTTTTTGGAGTGA+AGG + Chr3:51445163-51445182 None:intergenic 40.0%
AAACACTAAGCCTGCTATGG+TGG - Chr3:51448415-51448434 MsG0380014214.01.T01:five_prime_UTR 45.0%
AATTCGCGTGATCGATCCTT+TGG + Chr3:51447178-51447197 None:intergenic 45.0%
AGCACATGCCCATATTCGAT+AGG + Chr3:51447125-51447144 None:intergenic 45.0%
ATTCGCGTGATCGATCCTTT+GGG + Chr3:51447177-51447196 None:intergenic 45.0%
ATTGGGTTACAACAGCTTGG+GGG - Chr3:51447247-51447266 MsG0380014214.01.T01:CDS 45.0%
CAAATTGCAGCCGCAATGTA+AGG + Chr3:51447006-51447025 None:intergenic 45.0%
CACAGGCAGTAACATCGTAA+CGG + Chr3:51446448-51446467 None:intergenic 45.0%
CCAAGCTGTTGTAACCCAAT+CGG + Chr3:51447247-51447266 None:intergenic 45.0%
CCATAGTTTATGTCGCGATG+CGG - Chr3:51446962-51446981 MsG0380014214.01.T01:intron 45.0%
CCTCCAAAACCCTTACATTG+CGG - Chr3:51446993-51447012 MsG0380014214.01.T01:intron 45.0%
CGATTGGGTTACAACAGCTT+GGG - Chr3:51447245-51447264 MsG0380014214.01.T01:CDS 45.0%
CGGCTATTCAAAGGGTTTCA+CGG - Chr3:51445347-51445366 MsG0380014214.01.T01:three_prime_UTR 45.0%
CTCAAACACTAAGCCTGCTA+TGG - Chr3:51448412-51448431 MsG0380014214.01.T01:five_prime_UTR 45.0%
CTCAAAGACAAGACCTCTGA+CGG + Chr3:51447541-51447560 None:intergenic 45.0%
GACGTTGACACATACAGCTA+TGG - Chr3:51446210-51446229 MsG0380014214.01.T01:CDS 45.0%
GAGGAAATTTGGGAGCTTTG+TGG + Chr3:51445223-51445242 None:intergenic 45.0%
GAGGAAGAAGGACTTTGATG+AGG - Chr3:51448241-51448260 MsG0380014214.01.T01:five_prime_UTR 45.0%
GATGAGGATGCTCCTGTTAA+TGG - Chr3:51445751-51445770 MsG0380014214.01.T01:intron 45.0%
GATGCTCCTGTTAATGGTTG+TGG - Chr3:51445757-51445776 MsG0380014214.01.T01:intron 45.0%
GATTCAGACCTTGGTTTCAC+AGG + Chr3:51446465-51446484 None:intergenic 45.0%
GATTGGGTTACAACAGCTTG+GGG - Chr3:51447246-51447265 MsG0380014214.01.T01:CDS 45.0%
GCAAGAAAGAGGAGATCAGA+AGG + Chr3:51445478-51445497 None:intergenic 45.0%
GCAAGTTAATCCAGCTGTGT+GGG - Chr3:51448193-51448212 MsG0380014214.01.T01:five_prime_UTR 45.0%
GCAATGAAACCATACTCACC+CGG + Chr3:51446614-51446633 None:intergenic 45.0%
GCAGATACAGGCTTCAGAAA+CGG + Chr3:51447595-51447614 None:intergenic 45.0%
GGACTCGATTATTCTTGGAC+AGG - Chr3:51446013-51446032 MsG0380014214.01.T01:intron 45.0%
GGCAAACACTCGAAAATTCG+AGG + Chr3:51447155-51447174 None:intergenic 45.0%
GTATGGTTACAAAAGGGGTG+AGG - Chr3:51445941-51445960 MsG0380014214.01.T01:intron 45.0%
GTCATGTTGGCGTTAGAAAC+TGG - Chr3:51446279-51446298 MsG0380014214.01.T01:CDS 45.0%
GTGGAGAAGAGAAGCAAGAT+TGG + Chr3:51445204-51445223 None:intergenic 45.0%
GTTCGACCCAGTTCAAGAAA+CGG + Chr3:51445254-51445273 None:intergenic 45.0%
GTTGTGTTGAAGGCAGATAC+AGG + Chr3:51447607-51447626 None:intergenic 45.0%
TACATTGCGGCTGCAATTTG+CGG - Chr3:51447006-51447025 MsG0380014214.01.T01:intron 45.0%
TACGCAGAGAAACAAGCTCT+TGG - Chr3:51448143-51448162 MsG0380014214.01.T01:CDS 45.0%
TCAAAGACAAGACCTCTGAC+GGG + Chr3:51447540-51447559 None:intergenic 45.0%
TCTGATCTCCTCTTTCTTGC+TGG - Chr3:51445478-51445497 MsG0380014214.01.T01:CDS 45.0%
TGCCACTAAGGTTGTGTTTG+AGG + Chr3:51447823-51447842 None:intergenic 45.0%
TGTCACACCTCAATGTCTAG+AGG - Chr3:51448373-51448392 MsG0380014214.01.T01:five_prime_UTR 45.0%
TGTTACTGCCTGTGAAACCA+AGG - Chr3:51446454-51446473 MsG0380014214.01.T01:intron 45.0%
TTACAAAAGGGGTGAGGCAA+AGG - Chr3:51445947-51445966 MsG0380014214.01.T01:intron 45.0%
TTCATTGCTCAGCTGAACGA+GGG - Chr3:51446626-51446645 MsG0380014214.01.T01:CDS 45.0%
TTGTTGAACTATCCCGTCAG+AGG - Chr3:51447525-51447544 MsG0380014214.01.T01:intron 45.0%
TTTCATTGCTCAGCTGAACG+AGG - Chr3:51446625-51446644 MsG0380014214.01.T01:CDS 45.0%
! ATTTGAGGCTAGCTGTGATG+GGG - Chr3:51446760-51446779 MsG0380014214.01.T01:intron 45.0%
! CAATTTGAGGCTAGCTGTGA+TGG - Chr3:51446758-51446777 MsG0380014214.01.T01:intron 45.0%
! CATCACAGCTAGCCTCAAAT+TGG + Chr3:51446760-51446779 None:intergenic 45.0%
! GACTTGGTCTCATGTATGTG+TGG - Chr3:51446563-51446582 MsG0380014214.01.T01:intron 45.0%
! GCGAGTTTTTCTCTTACCAC+AGG - Chr3:51447665-51447684 MsG0380014214.01.T01:intron 45.0%
! GTCAGAGGTCTTGTCTTTGA+GGG - Chr3:51447540-51447559 MsG0380014214.01.T01:intron 45.0%
! GTGGACACATGGTGTTAAAG+AGG - Chr3:51448222-51448241 MsG0380014214.01.T01:five_prime_UTR 45.0%
!! TTCTTATTTCTGACTGCGGG+AGG - Chr3:51447643-51447662 MsG0380014214.01.T01:intron 45.0%
!! TTGTTGGTGGTAGGTGATTC+CGG - Chr3:51446592-51446611 MsG0380014214.01.T01:CDS 45.0%
!!! TTTTCGAGTGTTTGCCCCAA+AGG - Chr3:51447159-51447178 MsG0380014214.01.T01:CDS 45.0%
ATCGAGTCCAAGAAAGCCAC+AGG + Chr3:51446002-51446021 None:intergenic 50.0%
CCGATTGGGTTACAACAGCT+TGG - Chr3:51447244-51447263 MsG0380014214.01.T01:CDS 50.0%
CCGCATCGCGACATAAACTA+TGG + Chr3:51446965-51446984 None:intergenic 50.0%
CCTTACGTCGTGAACAACGA+CGG + Chr3:51445387-51445406 None:intergenic 50.0%
CGCAAGTTAATCCAGCTGTG+TGG - Chr3:51448192-51448211 MsG0380014214.01.T01:five_prime_UTR 50.0%
CGTCGTTGTTCACGACGTAA+GGG - Chr3:51445385-51445404 MsG0380014214.01.T01:three_prime_UTR 50.0%
CTCAACATCAATTGGCGCGT+CGG + Chr3:51446801-51446820 None:intergenic 50.0%
CTTACGTCGTGAACAACGAC+GGG + Chr3:51445386-51445405 None:intergenic 50.0%
CTTGTCTCCCATTGCATGCA+AGG - Chr3:51445971-51445990 MsG0380014214.01.T01:intron 50.0%
GAGGCGAAGCTTCCTTTGTA+TGG - Chr3:51445924-51445943 MsG0380014214.01.T01:intron 50.0%
GATCTCCTCTTTCTTGCTGG+TGG - Chr3:51445481-51445500 MsG0380014214.01.T01:CDS 50.0%
GCTGGAGAACCTTGTCAACT+TGG + Chr3:51446682-51446701 None:intergenic 50.0%
GGCCTCAAACACAACCTTAG+TGG - Chr3:51447818-51447837 MsG0380014214.01.T01:intron 50.0%
GGGAATTGGGTGTGAGAGAA+GGG + Chr3:51445183-51445202 None:intergenic 50.0%
GTGGGAAATCAGTGGACACA+TGG - Chr3:51448211-51448230 MsG0380014214.01.T01:five_prime_UTR 50.0%
TAGGTGATTCCGGGTGAGTA+TGG - Chr3:51446602-51446621 MsG0380014214.01.T01:CDS 50.0%
TCAACATCAATTGGCGCGTC+GGG + Chr3:51446800-51446819 None:intergenic 50.0%
TCGAGTCCAAGAAAGCCACA+GGG + Chr3:51446001-51446020 None:intergenic 50.0%
TGGGAATTGGGTGTGAGAGA+AGG + Chr3:51445184-51445203 None:intergenic 50.0%
TTCGCGTGATCGATCCTTTG+GGG + Chr3:51447176-51447195 None:intergenic 50.0%
! AGAGGTCTTGTCTTTGAGGG+TGG - Chr3:51447543-51447562 MsG0380014214.01.T01:intron 50.0%
! AGGCATCTGAAGCCAATGCT+CGG - Chr3:51448261-51448280 MsG0380014214.01.T01:five_prime_UTR 50.0%
! CAGCCGCAATGTAAGGGTTT+TGG + Chr3:51446999-51447018 None:intergenic 50.0%
! CGTCAGAGGTCTTGTCTTTG+AGG - Chr3:51447539-51447558 MsG0380014214.01.T01:intron 50.0%
! GGGGTGTTTCAAACCCGAAA+GGG - Chr3:51445301-51445320 MsG0380014214.01.T01:three_prime_UTR 50.0%
! TGGGGTGTTTCAAACCCGAA+AGG - Chr3:51445300-51445319 MsG0380014214.01.T01:three_prime_UTR 50.0%
!! CCGCAATGTAAGGGTTTTGG+AGG + Chr3:51446996-51447015 None:intergenic 50.0%
!! TGTTGGTGGTAGGTGATTCC+GGG - Chr3:51446593-51446612 MsG0380014214.01.T01:CDS 50.0%
ACTAAGCCTGCTATGGTGGC+TGG - Chr3:51448419-51448438 MsG0380014214.01.T01:five_prime_UTR 55.0%
CACCACCACCAGCAAGAAAG+AGG + Chr3:51445489-51445508 None:intergenic 55.0%
CCAGCTGTGTGGGAAATCAG+TGG - Chr3:51448203-51448222 MsG0380014214.01.T01:five_prime_UTR 55.0%
CCGTCGTTGTTCACGACGTA+AGG - Chr3:51445384-51445403 MsG0380014214.01.T01:three_prime_UTR 55.0%
CGTGGTGCTCTTCCTTCTGA+AGG - Chr3:51445445-51445464 MsG0380014214.01.T01:CDS 55.0%
CTCCTCTTTCTTGCTGGTGG+TGG - Chr3:51445484-51445503 MsG0380014214.01.T01:CDS 55.0%
CTTCACATGGCAGCTGAAGC+AGG - Chr3:51447209-51447228 MsG0380014214.01.T01:CDS 55.0%
GAAGGGCTACCACCTTCAGA+AGG + Chr3:51445460-51445479 None:intergenic 55.0%
GAGACCAACCCTTCACCACA+CGG - Chr3:51445418-51445437 MsG0380014214.01.T01:CDS 55.0%
GGGCGTTCCTTGCATGCAAT+GGG + Chr3:51445981-51446000 None:intergenic 55.0%
TGGCGCGTCGGGAAAGAATT+GGG + Chr3:51446789-51446808 None:intergenic 55.0%
TTGGCGCGTCGGGAAAGAAT+TGG + Chr3:51446790-51446809 None:intergenic 55.0%
! AGAAGTGCGTGCTGAGCTTC+TGG - Chr3:51448166-51448185 MsG0380014214.01.T01:exon 55.0%
! AGGGCGTTCCTTGCATGCAA+TGG + Chr3:51445982-51446001 None:intergenic 55.0%
! CTTTGAGGGTGGTCATGCAC+TGG - Chr3:51447554-51447573 MsG0380014214.01.T01:intron 55.0%
! GGCATCTGAAGCCAATGCTC+GGG - Chr3:51448262-51448281 MsG0380014214.01.T01:five_prime_UTR 55.0%
! GGTGCTCTTCCTTCTGAAGG+TGG - Chr3:51445448-51445467 MsG0380014214.01.T01:CDS 55.0%
!! CCACTGATTTCCCACACAGC+TGG + Chr3:51448206-51448225 None:intergenic 55.0%
ACCAACCCTTCACCACACGG+CGG - Chr3:51445421-51445440 MsG0380014214.01.T01:CDS 60.0%
GGAACGCCCTGTGGCTTTCT+TGG - Chr3:51445992-51446011 MsG0380014214.01.T01:intron 60.0%
GGCAAGAAGCTCCCGAGCAT+TGG + Chr3:51448276-51448295 None:intergenic 60.0%
TGCATGCAAGGAACGCCCTG+TGG - Chr3:51445983-51446002 MsG0380014214.01.T01:intron 60.0%
TGCGAACCAGCCACCATAGC+AGG + Chr3:51448428-51448447 None:intergenic 60.0%
TGGGAGGATCGCATGCAGAG+AGG - Chr3:51446416-51446435 MsG0380014214.01.T01:CDS 60.0%
CCAACCCTTCACCACACGGC+GGG - Chr3:51445422-51445441 MsG0380014214.01.T01:CDS 65.0%
TGCTCGGGAGCTTCTTGCCG+AGG - Chr3:51448277-51448296 MsG0380014214.01.T01:five_prime_UTR 65.0%
CACGCCCGCCGTGTGGTGAA+GGG + Chr3:51445429-51445448 None:intergenic 70.0%
CCCGCCGTGTGGTGAAGGGT+TGG + Chr3:51445425-51445444 None:intergenic 70.0%
CCACGCCCGCCGTGTGGTGA+AGG + Chr3:51445430-51445449 None:intergenic 75.0%
CCTTCACCACACGGCGGGCG+TGG - Chr3:51445427-51445446 MsG0380014214.01.T01:CDS 75.0%
! AGAGCACCACGCCCGCCGTG+TGG + Chr3:51445436-51445455 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 51445127 51448748 51445127 ID=MsG0380014214.01;Name=MsG0380014214.01
Chr3 mRNA 51445127 51448748 51445127 ID=MsG0380014214.01.T01;Parent=MsG0380014214.01;Name=MsG0380014214.01.T01;_AED=0.48;_eAED=0.48;_QI=576|1|1|1|1|1|7|279|428
Chr3 exon 51445127 51445735 51445127 ID=MsG0380014214.01.T01:exon:9991;Parent=MsG0380014214.01.T01
Chr3 exon 51446189 51446437 51446189 ID=MsG0380014214.01.T01:exon:9990;Parent=MsG0380014214.01.T01
Chr3 exon 51446574 51446759 51446574 ID=MsG0380014214.01.T01:exon:9989;Parent=MsG0380014214.01.T01
Chr3 exon 51447028 51447270 51447028 ID=MsG0380014214.01.T01:exon:9988;Parent=MsG0380014214.01.T01
Chr3 exon 51447400 51447459 51447400 ID=MsG0380014214.01.T01:exon:9987;Parent=MsG0380014214.01.T01
Chr3 exon 51447841 51447950 51447841 ID=MsG0380014214.01.T01:exon:9986;Parent=MsG0380014214.01.T01
Chr3 exon 51448064 51448748 51448064 ID=MsG0380014214.01.T01:exon:9985;Parent=MsG0380014214.01.T01
Chr3 five_prime_UTR 51448173 51448748 51448173 ID=MsG0380014214.01.T01:five_prime_utr;Parent=MsG0380014214.01.T01
Chr3 CDS 51448064 51448172 51448064 ID=MsG0380014214.01.T01:cds;Parent=MsG0380014214.01.T01
Chr3 CDS 51447841 51447950 51447841 ID=MsG0380014214.01.T01:cds;Parent=MsG0380014214.01.T01
Chr3 CDS 51447400 51447459 51447400 ID=MsG0380014214.01.T01:cds;Parent=MsG0380014214.01.T01
Chr3 CDS 51447028 51447270 51447028 ID=MsG0380014214.01.T01:cds;Parent=MsG0380014214.01.T01
Chr3 CDS 51446574 51446759 51446574 ID=MsG0380014214.01.T01:cds;Parent=MsG0380014214.01.T01
Chr3 CDS 51446189 51446437 51446189 ID=MsG0380014214.01.T01:cds;Parent=MsG0380014214.01.T01
Chr3 CDS 51445406 51445735 51445406 ID=MsG0380014214.01.T01:cds;Parent=MsG0380014214.01.T01
Chr3 three_prime_UTR 51445127 51445405 51445127 ID=MsG0380014214.01.T01:three_prime_utr;Parent=MsG0380014214.01.T01
Gene Sequence

>MsG0380014214.01.T01

ATGTTGAGTATTAAGAGGGTTCCTACGGTTGTTTCGAATTATCAAAAGGATGAGGATGCTCCTGTTAATGGTTGTGGACGAAATTGTCTCAAGAGTTGTTGTATTCAAGAGGCGAAGCTTCCTTTGTATGGTTACAAAAGGGGTGAGGCAAAGGACTTGTCTCCCATTGCATGCAAGGAACGCCCTGTGGCTTTCTTGGACTCGATTATTCTTGGACAGTGGGAGGATCGCATGCAGAGAGGACTGTTCCGTTACGATGTTACTGCCTGTGAAACCAAGGTGATTCCGGGTGAGTATGGTTTCATTGCTCAGCTGAACGAGGGTCGTCACCTCAAGAAGAGACCAACTGAATTCCAAGTTGACAAGGTTCTCCAGCCCTTTGATGAAACCAAATTCAATTTCACTAAAGTTGGACAAGAAGAGATCCTATTCCAATTTGAGGCTAGCTGTGATGGGGAAGCCCAATTCTTTCCCGACGCGCCAATTGATGTTGAGAATTCTCCAAGCTTTGTTGCCATCAATGTTAGTCCTATCGAATATGGGCATGTGCTTCTGATTCCTCGAATTTTCGAGTGTTTGCCCCAAAGGATCGATCACGCGAATTTTTCGCTTGCACTTCACATGGCAGCTGAAGCAGGAAATCCATATTTCCGATTGGGTTACAACAGCTTGGGGGCTTTCGCCACTATTAATCATCTTCACTTCCAGGCATATTATTTGGCTCTGCCTTTTCCAATTGAGAAGGCTTCTACTAAGAAGATTGCCAAATTAAATGGTGGTGTGAAAATATCTAAATTGTTGAACTATCCCGTCAGAGGTCTTGTCTTTGAGGGTGGTCATGCACTGGATGATTTAGCAAACACCGTTTCTGAAGCCTGTATCTGCCTTCAACACAACAACATACCTTACAATGTTCTTATTTCTGACTGCGGGAGGCGAGTTTTTCTCTTACCACAGTGCTACGCAGAGAAACAAGCTCTTGGAGAAGTGCGTGCTGAGCTTCTGGACACGCAAGTTAATCCAGCTGTGTGGGAAATCAGTGGACACATGGTGTTAAAGAGGAAGAAGGACTTTGATGAGGCATCTGAAGCCAATGCTCGGGAGCTTCTTGCCGAGGTTTCTCTCTCTAAAGAGAGGTTTGAAGAAGTCAATGCTCTTATTTTTCAAGCCATTACATCTGAAAAAATCGATGTCACACCTCAATGTCTAGAGGAAGTTGATGCAGTAAGCTCAAACACTAAGCCTGCTATGGTGGCTGGTTCGCATGAATGCCTTGTTCTTCAGTAA
Protein sequence

>MsG0380014214.01.T01

MLSIKRVPTVVSNYQKDEDAPVNGCGRNCLKSCCIQEAKLPLYGYKRGEAKDLSPIACKERPVAFLDSIILGQWEDRMQRGLFRYDVTACETKVIPGEYGFIAQLNEGRHLKKRPTEFQVDKVLQPFDETKFNFTKVGQEEILFQFEASCDGEAQFFPDAPIDVENSPSFVAINVSPIEYGHVLLIPRIFECLPQRIDHANFSLALHMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYLALPFPIEKASTKKIAKLNGGVKISKLLNYPVRGLVFEGGHALDDLANTVSEACICLQHNNIPYNVLISDCGRRVFLLPQCYAEKQALGEVRAELLDTQVNPAVWEISGHMVLKRKKDFDEASEANARELLAEVSLSKERFEEVNALIFQAITSEKIDVTPQCLEEVDAVSSNTKPAMVAGSHECLVLQ*