AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016963.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016963.01.T01 MTR_3g099100 98.586 495 7 0 6 500 34 528 0.0 1003
MsG0380016963.01.T01 MTR_8g096850 75.202 496 117 2 8 498 37 531 0.0 742
MsG0380016963.01.T01 MTR_8g094780 55.711 499 202 9 9 499 45 532 0.0 537
MsG0380016963.01.T01 MTR_3g097010 54.217 498 212 9 6 499 31 516 0.0 530
MsG0380016963.01.T01 MTR_3g097010 51.807 498 186 10 6 499 31 478 1.31e-170 490
MsG0380016963.01.T01 MTR_3g097010 53.319 467 202 9 37 499 1 455 2.10e-170 488
MsG0380016963.01.T01 MTR_8g044820 70.909 55 16 0 7 61 45 99 7.33e-18 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016963.01.T01 AT5G50640 67.677 495 150 5 8 499 58 545 0.0 664
MsG0380016963.01.T01 AT5G50530 67.677 495 150 5 8 499 58 545 0.0 664
MsG0380016963.01.T01 AT5G63490 66.733 502 151 7 6 499 47 540 0.0 634
MsG0380016963.01.T01 AT5G63490 66.733 502 151 7 6 499 47 540 0.0 634
MsG0380016963.01.T01 AT3G52950 59.161 453 173 6 9 455 60 506 0.0 535
MsG0380016963.01.T01 AT3G52950 59.161 453 173 6 9 455 60 506 0.0 535
MsG0380016963.01.T01 AT2G36500 54.656 494 203 7 9 499 58 533 0.0 520

Find 153 sgRNAs with CRISPR-Local

Find 525 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCAATCATAATCAATTT+TGG 0.077230 3:+90042029 None:intergenic
TCATTGTACTTTATGAAAAT+TGG 0.098695 3:-90042197 MsG0380016963.01.T01:three_prime_UTR
CTTCAAAGTACAAGATAAAA+AGG 0.176006 3:-90045165 MsG0380016963.01.T01:CDS
GCCGGAGCTGCCCTTGTTGC+TGG 0.186837 3:-90042423 MsG0380016963.01.T01:CDS
CCACCTTGATGCAAAGGTTT+TGG 0.193956 3:-90045400 MsG0380016963.01.T01:CDS
ACCAACCTTGCACCATCTTT+TGG 0.249187 3:+90048728 None:intergenic
TCATATACAGTTGTTGTTTC+GGG 0.250598 3:+90049069 None:intergenic
ATTATTACACATTCTGGATT+TGG 0.263880 3:+90046643 None:intergenic
AGTGAGAGCTCCTTCAAAAT+AGG 0.276671 3:-90045254 MsG0380016963.01.T01:CDS
AGAATTTGAGGCAGATTGTT+AGG 0.283716 3:+90043014 None:intergenic
TTCATATACAGTTGTTGTTT+CGG 0.284586 3:+90049068 None:intergenic
GTATCAATTATTACACATTC+TGG 0.285057 3:+90046637 None:intergenic
AACCCAAAATTGATTATGAT+TGG 0.295319 3:-90042032 MsG0380016963.01.T01:three_prime_UTR
CACCTGACATATTCATATTC+TGG 0.300161 3:-90042288 MsG0380016963.01.T01:three_prime_UTR
CACTGGGGATCTTCTAATTC+TGG 0.304511 3:-90048475 MsG0380016963.01.T01:intron
CTCGCTTCAAGTATGTTAAA+AGG 0.309592 3:+90042394 None:intergenic
ATCTTGAATTTACATGGAAT+TGG 0.312578 3:-90049154 None:intergenic
TAACAATCTGCCTCAAATTC+TGG 0.323404 3:-90043012 MsG0380016963.01.T01:intron
AGCTTTCCGTTGATATATAA+AGG 0.331111 3:-90042351 MsG0380016963.01.T01:three_prime_UTR
TTGGAAACAGGTGTGTCTTC+AGG 0.332085 3:+90048808 None:intergenic
GCTGCCCTTGTTGCTGGCTT+AGG 0.335023 3:-90042417 MsG0380016963.01.T01:CDS
CATTGTACTTTATGAAAATT+GGG 0.344842 3:-90042196 MsG0380016963.01.T01:three_prime_UTR
GGTTCTGATGGAGGAGAAAC+AGG 0.351814 3:-90045233 MsG0380016963.01.T01:CDS
TACTTTGAAGGAAAATGTAT+TGG 0.355418 3:+90045178 None:intergenic
CACAGGAAAGGTTCACGTTC+GGG 0.363196 3:-90042501 MsG0380016963.01.T01:CDS
GAATTGGACAGGGGTTTAAC+AGG 0.363372 3:-90049138 MsG0380016963.01.T01:CDS
CATCATTTGTTGAGGCCCTT+CGG 0.368161 3:-90048315 MsG0380016963.01.T01:CDS
GTTTCATCGTCATCATCATT+TGG 0.371602 3:+90045356 None:intergenic
GGTGGAGAATGGAGAAGTTT+TGG 0.376913 3:-90048602 MsG0380016963.01.T01:CDS
ACTTTGAAGGAAAATGTATT+GGG 0.391529 3:+90045179 None:intergenic
GCCAGCAACAAGGGCAGCTC+CGG 0.393231 3:+90042422 None:intergenic
GTACGTCGACAGGAAAATTT+AGG 0.394925 3:-90048636 MsG0380016963.01.T01:intron
CTTGTCATAACCTTGGAAAC+AGG 0.399483 3:+90048796 None:intergenic
ATCATTTGTTGAGGCCCTTC+GGG 0.407577 3:-90048314 MsG0380016963.01.T01:CDS
AGACCATGATAAAGTTGTAT+TGG 0.413757 3:-90042885 MsG0380016963.01.T01:CDS
AGTTCCAGTATGCTTTAGAT+TGG 0.414019 3:+90042328 None:intergenic
GCAATTGCAGCAGCTGTTGA+AGG 0.420737 3:-90048508 MsG0380016963.01.T01:CDS
CATCTTCCGGTGGTTGATAG+AGG 0.421884 3:-90046568 MsG0380016963.01.T01:intron
GATTCTAACGGGTTGCTTTG+TGG 0.422235 3:-90048997 MsG0380016963.01.T01:CDS
TGTGCCGTTGTTACTGTTGA+TGG 0.422789 3:-90048058 MsG0380016963.01.T01:CDS
TGCAAGGACTGTTGGTTTGA+AGG 0.427993 3:-90042828 MsG0380016963.01.T01:intron
TTTGAAAACAACAAAGAAGA+TGG 0.433460 3:-90048098 MsG0380016963.01.T01:CDS
TGCTGTGGCTACTGTTAGTC+AGG 0.436331 3:-90046415 MsG0380016963.01.T01:intron
GAATTTACATGGAATTGGAC+AGG 0.438695 3:-90049149 None:intergenic
AAATAAAGTACCTTCTCAAC+AGG 0.439105 3:+90047818 None:intergenic
GTCTTCAGGATTTATCTCTT+CGG 0.440857 3:+90048822 None:intergenic
GAAATTGTATTTAGACTATG+AGG 0.441637 3:-90042535 MsG0380016963.01.T01:CDS
TTATAACCTCCGTCATGCTC+CGG 0.443245 3:+90043072 None:intergenic
GGCATGCTTGCAGAAATATA+AGG 0.449708 3:+90045200 None:intergenic
AAGCATACTGGAACTTTGTA+TGG 0.453077 3:-90042320 MsG0380016963.01.T01:three_prime_UTR
CATCTACCTGTGGTGGAGAA+TGG 0.454004 3:-90048613 MsG0380016963.01.T01:CDS
CAAGGTTATGACAAGAAATC+CGG 0.454010 3:-90048788 MsG0380016963.01.T01:CDS
ACAAGAATAAACGACATTAA+CGG 0.457038 3:-90042092 MsG0380016963.01.T01:three_prime_UTR
AAGGCCAATCTAAAGCATAC+TGG 0.459289 3:-90042332 MsG0380016963.01.T01:three_prime_UTR
CGGATTTCTTGTCATAACCT+TGG 0.463058 3:+90048789 None:intergenic
TTCCAGAATATGAATATGTC+AGG 0.464804 3:+90042286 None:intergenic
GTAATAGAGCATCCACCCTC+CGG 0.465246 3:+90049025 None:intergenic
TATCAGTACCAAGTCTTTGA+AGG 0.465963 3:+90043042 None:intergenic
TATTACTAACCGATTCTAAC+GGG 0.469332 3:-90049008 MsG0380016963.01.T01:CDS
GTATGAAGTGCATCGACAAT+TGG 0.484525 3:+90046613 None:intergenic
GAATTTGAGGCAGATTGTTA+GGG 0.485640 3:+90043015 None:intergenic
GCATATAGTGGTGTTGCTGC+CGG 0.487780 3:-90042441 MsG0380016963.01.T01:CDS
TTGGAAAGTACCAGAATTTG+AGG 0.488750 3:+90043002 None:intergenic
TCACAGGAAAGGTTCACGTT+CGG 0.490167 3:-90042502 MsG0380016963.01.T01:CDS
CTTGTCGTCGGATGGCTGCC+CGG 0.491991 3:-90049044 MsG0380016963.01.T01:CDS
ACAAAGCAACCCGTTAGAAT+CGG 0.498034 3:+90048999 None:intergenic
GCACGATGCTACTGCACGTA+TGG 0.501271 3:-90048554 MsG0380016963.01.T01:CDS
TGCTACTGCACGTATGGAAA+GGG 0.503207 3:-90048548 MsG0380016963.01.T01:CDS
CTTCCACCACCTTGATGCAA+AGG 0.505424 3:-90045406 MsG0380016963.01.T01:CDS
GCATACAAATTTCAGTTCAA+GGG 0.513400 3:-90047888 MsG0380016963.01.T01:intron
CCTTTCTGAAACTCTTGCTG+TGG 0.513992 3:-90048758 MsG0380016963.01.T01:CDS
AGCATGCGTATTCAGATGCA+TGG 0.518010 3:-90042470 MsG0380016963.01.T01:CDS
TCGTCGGATGGCTGCCCGGA+GGG 0.518130 3:-90049040 MsG0380016963.01.T01:CDS
AAACCTTTGCATCAAGGTGG+TGG 0.518188 3:+90045403 None:intergenic
ATGGAAAGGGCCGCAGAGAA+AGG 0.521302 3:-90048535 MsG0380016963.01.T01:CDS
ATCCCAAAACCTTTGCATCA+AGG 0.522360 3:+90045397 None:intergenic
GAAGTCATTGCGTCTTTCAA+AGG 0.523215 3:-90049103 MsG0380016963.01.T01:CDS
TCCTTCAAAATAGGTTCTGA+TGG 0.525824 3:-90045245 MsG0380016963.01.T01:CDS
GCATGGGCCTCAGCATATAG+TGG 0.528916 3:-90042453 MsG0380016963.01.T01:CDS
GTTTCAGAAAGGACAAATAC+CGG 0.529303 3:+90048769 None:intergenic
TCGGATGGCTGCCCGGAGGG+TGG 0.531721 3:-90049037 MsG0380016963.01.T01:CDS
TTCTCAACAGGAGTTGATGC+TGG 0.537127 3:+90047830 None:intergenic
AGTTCTATCCTTCAAAGACT+TGG 0.538717 3:-90043050 MsG0380016963.01.T01:CDS
CCGCAGCTGTGGACCATGCA+AGG 0.538951 3:-90042844 MsG0380016963.01.T01:CDS
TATAACCTCCGTCATGCTCC+GGG 0.539335 3:+90043073 None:intergenic
CAGTGATCTTGCCGCAGCTG+TGG 0.540584 3:-90042855 MsG0380016963.01.T01:CDS
GTCATCATCATTTGGAGGCA+AGG 0.542220 3:+90045364 None:intergenic
AAGCCAATACAACTTTATCA+TGG 0.544514 3:+90042882 None:intergenic
GCCTCATCACTTATTTGCCG+AGG 0.545164 3:-90042126 MsG0380016963.01.T01:three_prime_UTR
ATGAGGGAACACGTGGTCAC+AGG 0.545902 3:-90042518 MsG0380016963.01.T01:CDS
TGAATTCTCATGAATGATTG+TGG 0.547590 3:+90048267 None:intergenic
CTCTAATTCATCATTTGTTG+AGG 0.548165 3:-90048323 MsG0380016963.01.T01:CDS
CTATTACTAACCGATTCTAA+CGG 0.548169 3:-90049009 MsG0380016963.01.T01:CDS
GATTGGCCTTTATATATCAA+CGG 0.552960 3:+90042345 None:intergenic
TAATAGAGCATCCACCCTCC+GGG 0.555067 3:+90049026 None:intergenic
TTCAAGGGATATCTTGATGC+GGG 0.556442 3:-90047873 MsG0380016963.01.T01:CDS
TGAAGACACACCTGTTTCCA+AGG 0.557672 3:-90048806 MsG0380016963.01.T01:CDS
ATGCTACTGCACGTATGGAA+AGG 0.559484 3:-90048549 MsG0380016963.01.T01:CDS
CCACAGCAAGAGTTTCAGAA+AGG 0.562156 3:+90048758 None:intergenic
TACAAGTATACAAGCAGCAA+GGG 0.563470 3:+90042164 None:intergenic
GCACTTCATACTATGCATGA+TGG 0.565198 3:-90046601 MsG0380016963.01.T01:CDS
AAGATGGTTGAACTTCATGC+AGG 0.567866 3:-90048082 MsG0380016963.01.T01:CDS
TGCATACGAGTTTAGATACC+CGG 0.570157 3:-90043091 MsG0380016963.01.T01:intron
ATTTAGGCATCTACCTGTGG+TGG 0.572148 3:-90048620 MsG0380016963.01.T01:CDS
AGCATCAACTCCTGTTGAGA+AGG 0.578946 3:-90047828 MsG0380016963.01.T01:intron
AATTTACATGGAATTGGACA+GGG 0.580728 3:-90049148 None:intergenic
GGAAACAGATGGCATGGTAG+TGG 0.580860 3:-90046469 MsG0380016963.01.T01:intron
TCATCGTCATCATCATTTGG+AGG 0.583345 3:+90045359 None:intergenic
ATATGAAGCTTGTCGTCGGA+TGG 0.588778 3:-90049052 MsG0380016963.01.T01:CDS
ACTTTACCTCTATCAACCAC+CGG 0.591116 3:+90046562 None:intergenic
ACATGTGACTCATGCTGCTG+TGG 0.591309 3:-90046430 MsG0380016963.01.T01:CDS
AGATGGCATGGTAGTGGCTG+TGG 0.591560 3:-90046463 MsG0380016963.01.T01:CDS
ATCATTTGGAGGCAAGGCCA+TGG 0.592374 3:+90045370 None:intergenic
TTTAGATACCCGGAGCATGA+CGG 0.592463 3:-90043081 MsG0380016963.01.T01:intron
CCTTGCATGGTCCACAGCTG+CGG 0.592524 3:+90042844 None:intergenic
AAGGCCTAAGCCAGCAACAA+GGG 0.592955 3:+90042413 None:intergenic
GTGGACCATGCAAGGACTGT+TGG 0.596875 3:-90042836 MsG0380016963.01.T01:CDS
GCCCTCCAAAAGATGGTGCA+AGG 0.596892 3:-90048733 MsG0380016963.01.T01:intron
ACTTCTCCATTCTCCACCAC+AGG 0.597141 3:+90048607 None:intergenic
TCTTGTACACAACACAGCCT+CGG 0.598974 3:+90042109 None:intergenic
TCAAACCAACAGTCCTTGCA+TGG 0.602075 3:+90042831 None:intergenic
TGCTTGCAGAAATATAAGGA+AGG 0.602186 3:+90045204 None:intergenic
GGAACACGTGGTCACAGGAA+AGG 0.606170 3:-90042513 MsG0380016963.01.T01:CDS
TCAACAGGAGTTGATGCTGG+TGG 0.611432 3:+90047833 None:intergenic
AAATTGTATTTAGACTATGA+GGG 0.617847 3:-90042534 MsG0380016963.01.T01:CDS
CTGTATATGAAGCTTGTCGT+CGG 0.618257 3:-90049056 MsG0380016963.01.T01:CDS
TTGTGGAATCCTCACAGACA+AGG 0.623268 3:-90048980 MsG0380016963.01.T01:intron
TGTGGAAGCCCTCCAAAAGA+TGG 0.623712 3:-90048740 MsG0380016963.01.T01:CDS
GCCTCGGCAAATAAGTGATG+AGG 0.624724 3:+90042125 None:intergenic
AAAGGCCTAAGCCAGCAACA+AGG 0.628281 3:+90042412 None:intergenic
TTACAAGTATACAAGCAGCA+AGG 0.628772 3:+90042163 None:intergenic
GCATGCGTATTCAGATGCAT+GGG 0.630040 3:-90042469 MsG0380016963.01.T01:CDS
GCTTGCAGAAATATAAGGAA+GGG 0.630571 3:+90045205 None:intergenic
TTCAAAATAGGTTCTGATGG+AGG 0.638390 3:-90045242 MsG0380016963.01.T01:CDS
AGTCACACACCTTGTCTGTG+AGG 0.641672 3:+90048971 None:intergenic
TGAATGATTGTGGACAGTGA+TGG 0.643866 3:+90048277 None:intergenic
GTGGTTGGAAACAGATGGCA+TGG 0.644034 3:-90046475 MsG0380016963.01.T01:intron
CTTGAAGCGAGTTTGATCGA+AGG 0.652497 3:-90042382 MsG0380016963.01.T01:exon
GTCGTCGGATGGCTGCCCGG+AGG 0.658322 3:-90049041 MsG0380016963.01.T01:CDS
GTTCAAGGGATATCTTGATG+CGG 0.662105 3:-90047874 MsG0380016963.01.T01:CDS
AGCAACACCACTATATGCTG+AGG 0.663447 3:+90042446 None:intergenic
AAAATTTAGGCATCTACCTG+TGG 0.672597 3:-90048623 MsG0380016963.01.T01:CDS
ATTTACATGGAATTGGACAG+GGG 0.674460 3:-90049147 None:intergenic
ACTGTTGATGGCAAACCTCG+AGG 0.678986 3:-90048046 MsG0380016963.01.T01:CDS
CCAAAACCTTTGCATCAAGG+TGG 0.687299 3:+90045400 None:intergenic
AGATACCCGGAGCATGACGG+AGG 0.687574 3:-90043078 MsG0380016963.01.T01:CDS
ACAGGGGTTTAACAGGAGAG+CGG 0.701289 3:-90049131 MsG0380016963.01.T01:CDS
GTTCTGATGGAGGAGAAACA+GGG 0.702384 3:-90045232 MsG0380016963.01.T01:CDS
TTTGCCATCAACAGTAACAA+CGG 0.702915 3:+90048054 None:intergenic
TTAGACTATGAGGGAACACG+TGG 0.704208 3:-90042525 MsG0380016963.01.T01:CDS
ACTTACGTAACGATGCCTCG+AGG 0.707769 3:+90048031 None:intergenic
AGAATGCATAGATTCACATG+TGG 0.732493 3:-90045140 MsG0380016963.01.T01:intron
ATGATGACGATGAAACACGA+AGG 0.733270 3:-90045349 MsG0380016963.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTATATAATTTTTTTTT+TGG - Chr3:90046802-90046821 MsG0380016963.01.T01:intron 0.0%
!! AAAATAAGTATAAATATAAG+GGG - Chr3:90047956-90047975 MsG0380016963.01.T01:intron 10.0%
!! CTCAAAATATTAATATTAAA+TGG + Chr3:90046609-90046628 None:intergenic 10.0%
!!! AATTAAAAGAAATTTTTTTC+AGG - Chr3:90047010-90047029 MsG0380016963.01.T01:intron 10.0%
!!! ATTAAAAGAAATTTTTTTCA+GGG - Chr3:90047011-90047030 MsG0380016963.01.T01:intron 10.0%
!!! ATTTATTTTTTTATTTCTCA+AGG + Chr3:90045334-90045353 None:intergenic 10.0%
!!! TTTTTCGTTAATATTTTTAA+TGG - Chr3:90045696-90045715 MsG0380016963.01.T01:intron 10.0%
!! AAAGTAAATATATATAGGAT+GGG - Chr3:90044623-90044642 MsG0380016963.01.T01:intron 15.0%
!! AATTATCACTTTGATAAATT+AGG + Chr3:90044263-90044282 None:intergenic 15.0%
!! AATTATCATGAAATAAAACT+CGG + Chr3:90042809-90042828 None:intergenic 15.0%
!! AATTTATAATGCATCATTAT+GGG - Chr3:90047711-90047730 MsG0380016963.01.T01:intron 15.0%
!! ACAAGTATCAATTAATATTA+TGG - Chr3:90046149-90046168 MsG0380016963.01.T01:intron 15.0%
!! GAAAAAATTAAAGAGATAAA+AGG - Chr3:90044292-90044311 MsG0380016963.01.T01:intron 15.0%
!! TAAAGTAAATATATATAGGA+TGG - Chr3:90044622-90044641 MsG0380016963.01.T01:intron 15.0%
!!! AAACAAATTTTACTTGAAAT+AGG + Chr3:90048023-90048042 None:intergenic 15.0%
!!! AACTTTTTTTTTGTTCAAAA+TGG - Chr3:90048549-90048568 MsG0380016963.01.T01:CDS 15.0%
!!! AGTTTTATTTCATGATAATT+TGG - Chr3:90042809-90042828 MsG0380016963.01.T01:intron 15.0%
!!! GATTTTACAAAATTTAAGAA+TGG + Chr3:90043422-90043441 None:intergenic 15.0%
!!! TAGTCAAATATTTTTAATGT+TGG + Chr3:90045545-90045564 None:intergenic 15.0%
!!! TATAATTTTTTTTTTGGTAG+TGG - Chr3:90046808-90046827 MsG0380016963.01.T01:intron 15.0%
!!! TTAAAAAAATTAGAAGTGTT+TGG - Chr3:90046383-90046402 MsG0380016963.01.T01:intron 15.0%
!!! TTAAAAGAAATTTTTTTCAG+GGG - Chr3:90047012-90047031 MsG0380016963.01.T01:intron 15.0%
!! AAATTGTATTTAGACTATGA+GGG - Chr3:90048633-90048652 MsG0380016963.01.T01:intron 20.0%
!! AACTTGTAGAAACAATTATA+TGG + Chr3:90047862-90047881 None:intergenic 20.0%
!! AAGAGATAAAAGGATATATT+AGG - Chr3:90044302-90044321 MsG0380016963.01.T01:intron 20.0%
!! AAGTAAATATATATAGGATG+GGG - Chr3:90044624-90044643 MsG0380016963.01.T01:intron 20.0%
!! AATCTTGAATTCAAATAAGA+AGG + Chr3:90042938-90042957 None:intergenic 20.0%
!! ACAAAATTTAAGAATGGAAA+AGG + Chr3:90043416-90043435 None:intergenic 20.0%
!! AGAACATAAATATTATGCTT+TGG + Chr3:90048187-90048206 None:intergenic 20.0%
!! ATAAAAGGATATATTAGGAA+AGG - Chr3:90044307-90044326 MsG0380016963.01.T01:intron 20.0%
!! ATAAAATAAAATAGATTGCG+GGG + Chr3:90044907-90044926 None:intergenic 20.0%
!! ATGGGAATAAATAAACAAAA+AGG + Chr3:90047934-90047953 None:intergenic 20.0%
!! ATGTTATCATTTACATTGAT+AGG - Chr3:90046173-90046192 MsG0380016963.01.T01:intron 20.0%
!! ATTAATTATACCTGCAATTA+TGG - Chr3:90044850-90044869 MsG0380016963.01.T01:intron 20.0%
!! CAATTTATAATGCATCATTA+TGG - Chr3:90047710-90047729 MsG0380016963.01.T01:intron 20.0%
!! CATAAAATAAAATAGATTGC+GGG + Chr3:90044908-90044927 None:intergenic 20.0%
!! CATTGTACTTTATGAAAATT+GGG - Chr3:90048971-90048990 MsG0380016963.01.T01:intron 20.0%
!! CCATAAAATAAAATAGATTG+CGG + Chr3:90044909-90044928 None:intergenic 20.0%
!! GAGGTAAAGTAAATATATAT+AGG - Chr3:90044618-90044637 MsG0380016963.01.T01:intron 20.0%
!! GATTGTTTGTAACAAAAAAA+AGG + Chr3:90046703-90046722 None:intergenic 20.0%
!! GCATAATATTTATGTTCTTT+AGG - Chr3:90048189-90048208 MsG0380016963.01.T01:intron 20.0%
!! GTAAACCAAAAATTAAGATA+GGG + Chr3:90042301-90042320 None:intergenic 20.0%
!! TCATTGTACTTTATGAAAAT+TGG - Chr3:90048970-90048989 MsG0380016963.01.T01:intron 20.0%
!! TGTAAACCAAAAATTAAGAT+AGG + Chr3:90042302-90042321 None:intergenic 20.0%
!!! AAGTTATATGAAGTTTGTTT+TGG + Chr3:90046548-90046567 None:intergenic 20.0%
!!! AATCCAATCATAATCAATTT+TGG + Chr3:90049141-90049160 None:intergenic 20.0%
!!! AGTTATATGAAGTTTGTTTT+GGG + Chr3:90046547-90046566 None:intergenic 20.0%
!!! ATAAAGCACATTTATCATTT+TGG - Chr3:90046966-90046985 MsG0380016963.01.T01:intron 20.0%
!!! ATACAAAAGTGCTATTTTTT+AGG + Chr3:90042767-90042786 None:intergenic 20.0%
!!! ATCAATATCTTTTCTGATTT+GGG - Chr3:90044664-90044683 MsG0380016963.01.T01:intron 20.0%
!!! ATCCAATCATAATCAATTTT+GGG + Chr3:90049140-90049159 None:intergenic 20.0%
!!! ATTTGGATATTTTATCTATG+TGG - Chr3:90047737-90047756 MsG0380016963.01.T01:intron 20.0%
!!! CGGTTTTTATATTATTATTC+AGG - Chr3:90048475-90048494 MsG0380016963.01.T01:intron 20.0%
!!! CTTATCAAAATTAAAGTGTT+TGG + Chr3:90047157-90047176 None:intergenic 20.0%
!!! TACAAAAGTGCTATTTTTTA+GGG + Chr3:90042766-90042785 None:intergenic 20.0%
!!! TACAGATTTTAAACTTTTTC+CGG + Chr3:90048416-90048435 None:intergenic 20.0%
!!! TATAGATTTAAGTTGTTTGT+TGG - Chr3:90047676-90047695 MsG0380016963.01.T01:intron 20.0%
!!! TATCTTAATTTTTGGTTTAC+AGG - Chr3:90042301-90042320 MsG0380016963.01.T01:three_prime_UTR 20.0%
!!! TATTTTTCTTTTGGAGATTA+TGG + Chr3:90043678-90043697 None:intergenic 20.0%
!!! TATTTTTTTATTTCTCAAGG+AGG + Chr3:90045331-90045350 None:intergenic 20.0%
!!! TGTTTTTTGCTATATTACTA+TGG + Chr3:90045368-90045387 None:intergenic 20.0%
!!! TTCAAGTAAAATTTGTTTGT+AGG - Chr3:90048025-90048044 MsG0380016963.01.T01:intron 20.0%
!!! TTGTTTTCTTTCTTGTTAAT+TGG + Chr3:90042239-90042258 None:intergenic 20.0%
!!! TTTATCCCTATCTTAATTTT+TGG - Chr3:90042293-90042312 MsG0380016963.01.T01:three_prime_UTR 20.0%
!!! TTTTACTAAAAAATGAACCA+TGG + Chr3:90045662-90045681 None:intergenic 20.0%
!!! TTTTAGTTTTGAATGAGTAA+TGG - Chr3:90047810-90047829 MsG0380016963.01.T01:intron 20.0%
! AAACTCAATGTCAGAAAAAA+TGG + Chr3:90049111-90049130 None:intergenic 25.0%
! AAATGTAGCATCAAAATTGA+TGG - Chr3:90045447-90045466 MsG0380016963.01.T01:intron 25.0%
! AAATTCATCAGTTCAGAAAA+TGG - Chr3:90045039-90045058 MsG0380016963.01.T01:intron 25.0%
! AAATTTAAGAATGGAAAAGG+TGG + Chr3:90043413-90043432 None:intergenic 25.0%
! AACCCAAAATTGATTATGAT+TGG - Chr3:90049135-90049154 MsG0380016963.01.T01:CDS 25.0%
! AAGGACAAGTAACAAAAATA+TGG - Chr3:90044106-90044125 MsG0380016963.01.T01:intron 25.0%
! ACAAGAATAAACGACATTAA+CGG - Chr3:90049075-90049094 MsG0380016963.01.T01:CDS 25.0%
! ACCAACAAAATAGTAATTGA+CGG + Chr3:90044225-90044244 None:intergenic 25.0%
! AGGACAAGTAACAAAAATAT+GGG - Chr3:90044107-90044126 MsG0380016963.01.T01:intron 25.0%
! AGTACATTAAAAAGTTGGAA+AGG + Chr3:90045871-90045890 None:intergenic 25.0%
! ATATATGCAACAAAATATGC+AGG - Chr3:90044493-90044512 MsG0380016963.01.T01:intron 25.0%
! ATTATTACACATTCTGGATT+TGG + Chr3:90044527-90044546 None:intergenic 25.0%
! CAATTTCCTTTAACAGAAAA+TGG - Chr3:90043006-90043025 MsG0380016963.01.T01:intron 25.0%
! CCTTCTAAATTTCTAATACA+CGG + Chr3:90044424-90044443 None:intergenic 25.0%
! CTTCAAAGTACAAGATAAAA+AGG - Chr3:90046002-90046021 MsG0380016963.01.T01:intron 25.0%
! GAAATTGTATTTAGACTATG+AGG - Chr3:90048632-90048651 MsG0380016963.01.T01:intron 25.0%
! GCATAAAACATAAAGAGAAA+AGG - Chr3:90043622-90043641 MsG0380016963.01.T01:intron 25.0%
! GTATCAATTATTACACATTC+TGG + Chr3:90044533-90044552 None:intergenic 25.0%
! GTGTAAGTACATTAAAAAGT+TGG + Chr3:90045876-90045895 None:intergenic 25.0%
! TAAAACATAAAGAGAAAAGG+AGG - Chr3:90043625-90043644 MsG0380016963.01.T01:intron 25.0%
! TAAAATAAAATAGATTGCGG+GGG + Chr3:90044906-90044925 None:intergenic 25.0%
! TAAGTTTAGTAGTTGAGTTT+GGG - Chr3:90047612-90047631 MsG0380016963.01.T01:intron 25.0%
! TACAGGATATAAAATGATGA+TGG - Chr3:90045144-90045163 MsG0380016963.01.T01:CDS 25.0%
! TAGAAATTTAGAAGGAAAAG+CGG - Chr3:90044429-90044448 MsG0380016963.01.T01:intron 25.0%
! TGAATTTAATCAAATCCACT+AGG - Chr3:90043906-90043925 MsG0380016963.01.T01:intron 25.0%
! TGTTGCATATATATCAAGTT+GGG + Chr3:90044485-90044504 None:intergenic 25.0%
! TTATATACATTGAAGTTGCT+TGG - Chr3:90045841-90045860 MsG0380016963.01.T01:intron 25.0%
! TTGTTGCATATATATCAAGT+TGG + Chr3:90044486-90044505 None:intergenic 25.0%
! TTTGAAAACAACAAAGAAGA+TGG - Chr3:90043069-90043088 MsG0380016963.01.T01:CDS 25.0%
! TTTGCCATTGTAAAACAAAA+AGG + Chr3:90043496-90043515 None:intergenic 25.0%
!! AACTGATCTTTTATTAACTG+AGG - Chr3:90045591-90045610 MsG0380016963.01.T01:intron 25.0%
!! ACAACTACATTCTTTTCTAT+AGG - Chr3:90048910-90048929 MsG0380016963.01.T01:intron 25.0%
!! ACTTTGAAGGAAAATGTATT+GGG + Chr3:90045991-90046010 None:intergenic 25.0%
!! ATAAAAGTACAAGACACTAT+GGG - Chr3:90046236-90046255 MsG0380016963.01.T01:intron 25.0%
!! CATCAATATCTTTTCTGATT+TGG - Chr3:90044663-90044682 MsG0380016963.01.T01:intron 25.0%
!! CATTTTCTGTTAAAGGAAAT+TGG + Chr3:90043008-90043027 None:intergenic 25.0%
!! CTTTTTATCTTGTACTTTGA+AGG + Chr3:90046004-90046023 None:intergenic 25.0%
!! GAAAAACTTTTCAGAAAAAG+AGG + Chr3:90043196-90043215 None:intergenic 25.0%
!! GCTTGTATACTTGTAATTTT+AGG - Chr3:90049011-90049030 MsG0380016963.01.T01:CDS 25.0%
!! TACTTTGAAGGAAAATGTAT+TGG + Chr3:90045992-90046011 None:intergenic 25.0%
!! TATAAAAGTACAAGACACTA+TGG - Chr3:90046235-90046254 MsG0380016963.01.T01:intron 25.0%
!! TGGAAAATTTTTACATCTTC+CGG - Chr3:90044586-90044605 MsG0380016963.01.T01:intron 25.0%
!! TTACAGAATGACATACTTTT+AGG + Chr3:90045573-90045592 None:intergenic 25.0%
!!! AACGGTGTTTTTTTGAATTT+GGG - Chr3:90048589-90048608 MsG0380016963.01.T01:CDS 25.0%
!!! ACAGATTTTAAACTTTTTCC+GGG + Chr3:90048415-90048434 None:intergenic 25.0%
!!! ATTCTAAAACATCAACTCAA+AGG + Chr3:90044158-90044177 None:intergenic 25.0%
!!! CCGCAATCTATTTTATTTTA+TGG - Chr3:90044906-90044925 MsG0380016963.01.T01:intron 25.0%
!!! GGTATAATAGATTTTTTTGC+TGG - Chr3:90048360-90048379 MsG0380016963.01.T01:intron 25.0%
!!! GTATTGTTTTTTCTTAGACA+AGG - Chr3:90047835-90047854 MsG0380016963.01.T01:CDS 25.0%
!!! TAACGGTGTTTTTTTGAATT+TGG - Chr3:90048588-90048607 MsG0380016963.01.T01:CDS 25.0%
!!! TGTTCCTTTTTGTTTTACAA+TGG - Chr3:90043489-90043508 MsG0380016963.01.T01:intron 25.0%
!!! TTATTGATTTAGTGCAGATA+AGG - Chr3:90048448-90048467 MsG0380016963.01.T01:intron 25.0%
!!! TTCATATACAGTTGTTGTTT+CGG + Chr3:90042102-90042121 None:intergenic 25.0%
AAAATAAAATAGATTGCGGG+GGG + Chr3:90044905-90044924 None:intergenic 30.0%
AAATCTTGGTAGAATTGACT+TGG - Chr3:90045112-90045131 MsG0380016963.01.T01:intron 30.0%
AACTATTGCATATCATCTGT+TGG - Chr3:90046056-90046075 MsG0380016963.01.T01:intron 30.0%
AAGACTAAATCCTGCTTTAA+TGG + Chr3:90047657-90047676 None:intergenic 30.0%
AAGATGATAAAGGCTATGTT+TGG - Chr3:90046310-90046329 MsG0380016963.01.T01:intron 30.0%
AAGCCAATACAACTTTATCA+TGG + Chr3:90048288-90048307 None:intergenic 30.0%
AAGTTTAGTAGTTGAGTTTG+GGG - Chr3:90047613-90047632 MsG0380016963.01.T01:intron 30.0%
AATAGTAATTGACGGTATCT+TGG + Chr3:90044217-90044236 None:intergenic 30.0%
ACAAATGATGAATTAGAGTC+TGG + Chr3:90042842-90042861 None:intergenic 30.0%
ACACACATAATGATAGTTGT+GGG + Chr3:90043227-90043246 None:intergenic 30.0%
ACATCAGCCATGTATTAAAA+GGG + Chr3:90042513-90042532 None:intergenic 30.0%
ACATGAAAGTTAGACTTTCA+AGG - Chr3:90044990-90045009 MsG0380016963.01.T01:intron 30.0%
ACTATTGCATATCATCTGTT+GGG - Chr3:90046057-90046076 MsG0380016963.01.T01:intron 30.0%
AGACCATGATAAAGTTGTAT+TGG - Chr3:90048282-90048301 MsG0380016963.01.T01:CDS 30.0%
AGCTTTCCGTTGATATATAA+AGG - Chr3:90048816-90048835 MsG0380016963.01.T01:CDS 30.0%
ATACGATCAATGAATGTACA+AGG - Chr3:90047295-90047314 MsG0380016963.01.T01:intron 30.0%
ATCAGTTCAGAAAATGGTAT+TGG - Chr3:90045045-90045064 MsG0380016963.01.T01:intron 30.0%
ATCTAGATCTAGTAATGTTC+AGG - Chr3:90043439-90043458 MsG0380016963.01.T01:intron 30.0%
ATTTAATCAAATCCACTAGG+TGG - Chr3:90043909-90043928 MsG0380016963.01.T01:intron 30.0%
CATGAAAGTTAGACTTTCAA+GGG - Chr3:90044991-90045010 MsG0380016963.01.T01:intron 30.0%
CATTCATGAGAATTCAAAGT+AGG - Chr3:90042907-90042926 MsG0380016963.01.T01:intron 30.0%
CCGTGTATTAGAAATTTAGA+AGG - Chr3:90044421-90044440 MsG0380016963.01.T01:intron 30.0%
CTCTATGAGTAATTTACGAT+TGG - Chr3:90047988-90048007 MsG0380016963.01.T01:intron 30.0%
GATGCTTGAAAAGGAATATA+AGG - Chr3:90044394-90044413 MsG0380016963.01.T01:intron 30.0%
GCATACAAATTTCAGTTCAA+GGG - Chr3:90043279-90043298 MsG0380016963.01.T01:intron 30.0%
GGATTAACATACTTCTGTAA+GGG - Chr3:90045012-90045031 MsG0380016963.01.T01:intron 30.0%
GTAAAACAAAAAGGAACAGA+GGG + Chr3:90043487-90043506 None:intergenic 30.0%
GTAAGTTTAGTAGTTGAGTT+TGG - Chr3:90047611-90047630 MsG0380016963.01.T01:intron 30.0%
TAAGGTGGAAAAGATGATAA+AGG - Chr3:90046300-90046319 MsG0380016963.01.T01:intron 30.0%
TACACAAACTCATGAAATCT+TGG - Chr3:90045098-90045117 MsG0380016963.01.T01:intron 30.0%
TACACACATAATGATAGTTG+TGG + Chr3:90043228-90043247 None:intergenic 30.0%
TACATCAGCCATGTATTAAA+AGG + Chr3:90042514-90042533 None:intergenic 30.0%
TACGATCAATGAATGTACAA+GGG - Chr3:90047296-90047315 MsG0380016963.01.T01:intron 30.0%
TCTAGTAATGTTCAGGAATT+AGG - Chr3:90043446-90043465 MsG0380016963.01.T01:intron 30.0%
TGAATTCTCATGAATGATTG+TGG + Chr3:90042903-90042922 None:intergenic 30.0%
TGAGAAAATTCAAGACATGT+AGG + Chr3:90042269-90042288 None:intergenic 30.0%
TGAGTAATTTACGATTGGAT+AGG - Chr3:90047993-90048012 MsG0380016963.01.T01:intron 30.0%
TGCATACAAATTTCAGTTCA+AGG - Chr3:90043278-90043297 MsG0380016963.01.T01:intron 30.0%
TGTAAAACAAAAAGGAACAG+AGG + Chr3:90043488-90043507 None:intergenic 30.0%
TTATGCTATACCATTAAAGC+AGG - Chr3:90047644-90047663 MsG0380016963.01.T01:intron 30.0%
TTCAATTATTGTCTGTACTG+CGG - Chr3:90044814-90044833 MsG0380016963.01.T01:intron 30.0%
TTCCAGAATATGAATATGTC+AGG + Chr3:90048884-90048903 None:intergenic 30.0%
TTGCTCGTTACTTATTAGTA+TGG + Chr3:90046204-90046223 None:intergenic 30.0%
TTTAATCAAATCCACTAGGT+GGG - Chr3:90043910-90043929 MsG0380016963.01.T01:intron 30.0%
! AAAATTTTTACATCTTCCGG+TGG - Chr3:90044589-90044608 MsG0380016963.01.T01:intron 30.0%
! AAATAAAGTACCTTCTCAAC+AGG + Chr3:90043352-90043371 None:intergenic 30.0%
! ACCGTCAATTACTATTTTGT+TGG - Chr3:90044221-90044240 MsG0380016963.01.T01:intron 30.0%
! CTATTACTAACCGATTCTAA+CGG - Chr3:90042158-90042177 MsG0380016963.01.T01:three_prime_UTR 30.0%
! CTCTAATTCATCATTTGTTG+AGG - Chr3:90042844-90042863 MsG0380016963.01.T01:CDS 30.0%
! GTTGCATATATATCAAGTTG+GGG + Chr3:90044484-90044503 None:intergenic 30.0%
! TAAGCTAGCTTATAGCTTAT+TGG - Chr3:90046342-90046361 MsG0380016963.01.T01:intron 30.0%
! TATTACTAACCGATTCTAAC+GGG - Chr3:90042159-90042178 MsG0380016963.01.T01:three_prime_UTR 30.0%
! TTAACCTTTTTCTAGGTTCA+GGG + Chr3:90044042-90044061 None:intergenic 30.0%
! TTTATCATCTTTTCCACCTT+AGG + Chr3:90046301-90046320 None:intergenic 30.0%
! TTTGAATATCTTTTCCCGAA+GGG + Chr3:90042870-90042889 None:intergenic 30.0%
!! AACAGAAAATGGCACTTTTT+AGG - Chr3:90043017-90043036 MsG0380016963.01.T01:CDS 30.0%
!! AGATTTTAAACTTTTTCCGG+GGG + Chr3:90048413-90048432 None:intergenic 30.0%
!! ATCAAGTTGGGGATTAAAAA+AGG + Chr3:90044473-90044492 None:intergenic 30.0%
!! ATTTTGATGCTACATTTGAC+AGG + Chr3:90045444-90045463 None:intergenic 30.0%
!! CAGATTTTAAACTTTTTCCG+GGG + Chr3:90048414-90048433 None:intergenic 30.0%
!! GATTGGCCTTTATATATCAA+CGG + Chr3:90048825-90048844 None:intergenic 30.0%
!! GTTGTTTTCATAAGTCATAC+TGG + Chr3:90047434-90047453 None:intergenic 30.0%
!! TCATATACAGTTGTTGTTTC+GGG + Chr3:90042101-90042120 None:intergenic 30.0%
!! TGACTTGGAAACTATTTTAC+AGG - Chr3:90045127-90045146 MsG0380016963.01.T01:intron 30.0%
!!! AAAGTGCCATTTTCTGTTAA+AGG + Chr3:90043015-90043034 None:intergenic 30.0%
!!! ATCATTTTTTCCCACTATCT+AGG - Chr3:90045723-90045742 MsG0380016963.01.T01:intron 30.0%
!!! ATTTGGGTTGATGATTTTGT+AGG - Chr3:90048605-90048624 MsG0380016963.01.T01:CDS 30.0%
!!! ATTTTTTTTTTGGTAGTGGC+CGG - Chr3:90046812-90046831 MsG0380016963.01.T01:intron 30.0%
!!! GCATTTTTTTTTCTTCATGC+TGG - Chr3:90048947-90048966 MsG0380016963.01.T01:intron 30.0%
!!! GCTGGTTTTCTTATTAAGAT+GGG - Chr3:90047891-90047910 MsG0380016963.01.T01:intron 30.0%
!!! TGCTGGTTTTCTTATTAAGA+TGG - Chr3:90047890-90047909 MsG0380016963.01.T01:intron 30.0%
!!! TTTGGGTTGATGATTTTGTA+GGG - Chr3:90048606-90048625 MsG0380016963.01.T01:CDS 30.0%
AAAATTTAGGCATCTACCTG+TGG - Chr3:90042544-90042563 MsG0380016963.01.T01:intron 35.0%
AAAGGAATGAACACCCAAAA+TGG + Chr3:90044455-90044474 None:intergenic 35.0%
AAGCATACTGGAACTTTGTA+TGG - Chr3:90048847-90048866 MsG0380016963.01.T01:CDS 35.0%
ACATGTGAATCTATGCATTC+TGG + Chr3:90046028-90046047 None:intergenic 35.0%
AGAATGCATAGATTCACATG+TGG - Chr3:90046027-90046046 MsG0380016963.01.T01:intron 35.0%
AGTATAGACGATGCTTGAAA+AGG - Chr3:90044385-90044404 MsG0380016963.01.T01:intron 35.0%
AGTCACAGAATAGTAGTACA+AGG - Chr3:90043570-90043589 MsG0380016963.01.T01:intron 35.0%
AGTTCTATCCTTCAAAGACT+TGG - Chr3:90048117-90048136 MsG0380016963.01.T01:CDS 35.0%
ATCAACTCAAAGGAACAAAG+TGG + Chr3:90044148-90044167 None:intergenic 35.0%
CAAGGTTATGACAAGAAATC+CGG - Chr3:90042379-90042398 MsG0380016963.01.T01:exon 35.0%
CAATAAAATAAACCTACGCC+AGG - Chr3:90045418-90045437 MsG0380016963.01.T01:CDS 35.0%
CACACATAATGATAGTTGTG+GGG + Chr3:90043226-90043245 None:intergenic 35.0%
CACCTGACATATTCATATTC+TGG - Chr3:90048879-90048898 MsG0380016963.01.T01:intron 35.0%
CAGAGAAAATGAAATCACTC+CGG - Chr3:90043951-90043970 MsG0380016963.01.T01:intron 35.0%
CCAAAAAAAACACTTGCATG+AGG - Chr3:90043883-90043902 MsG0380016963.01.T01:intron 35.0%
CTCGCTTCAAGTATGTTAAA+AGG + Chr3:90048776-90048795 None:intergenic 35.0%
GAAAGTTGTAGTTACACCTA+AGG - Chr3:90046282-90046301 MsG0380016963.01.T01:intron 35.0%
GACAATGCATAAACTATGCA+AGG + Chr3:90046853-90046872 None:intergenic 35.0%
GCTTGCAGAAATATAAGGAA+GGG + Chr3:90045965-90045984 None:intergenic 35.0%
GGGATTAACATACTTCTGTA+AGG - Chr3:90045011-90045030 MsG0380016963.01.T01:intron 35.0%
GTCTTCAGGATTTATCTCTT+CGG + Chr3:90042348-90042367 None:intergenic 35.0%
GTGGTATAGTGTGTTTAGAT+GGG + Chr3:90044073-90044092 None:intergenic 35.0%
GTTTCAGAAAGGACAAATAC+CGG + Chr3:90042401-90042420 None:intergenic 35.0%
GTTTCATCGTCATCATCATT+TGG + Chr3:90045814-90045833 None:intergenic 35.0%
TAACAATCTGCCTCAAATTC+TGG - Chr3:90048155-90048174 MsG0380016963.01.T01:intron 35.0%
TACAAGTATACAAGCAGCAA+GGG + Chr3:90049006-90049025 None:intergenic 35.0%
TACCACACTCTACTAAAGAA+AGG - Chr3:90044087-90044106 MsG0380016963.01.T01:intron 35.0%
TATCAGTACCAAGTCTTTGA+AGG + Chr3:90048128-90048147 None:intergenic 35.0%
TCAAAATGGTCTCTGCAATT+TGG - Chr3:90048563-90048582 MsG0380016963.01.T01:CDS 35.0%
TCAACTCAAAGGAACAAAGT+GGG + Chr3:90044147-90044166 None:intergenic 35.0%
TCATACTGCATTCAAAACCA+AGG - Chr3:90046657-90046676 MsG0380016963.01.T01:intron 35.0%
TCCTACTCATAAAAGGAGTA+AGG - Chr3:90043844-90043863 MsG0380016963.01.T01:intron 35.0%
TCGTCAGCTTATGAAAAGTA+GGG + Chr3:90048238-90048257 None:intergenic 35.0%
TCGTCTATACTAACGACATA+TGG + Chr3:90044376-90044395 None:intergenic 35.0%
TCTGACATACTTTCTTGACA+AGG + Chr3:90047585-90047604 None:intergenic 35.0%
TGAAGGAGTTGAAAAACACT+GGG - Chr3:90042676-90042695 MsG0380016963.01.T01:intron 35.0%
TGCATCATTATGGGAAGATT+TGG - Chr3:90047720-90047739 MsG0380016963.01.T01:intron 35.0%
TGCCATATCCTACTCATAAA+AGG - Chr3:90043837-90043856 MsG0380016963.01.T01:intron 35.0%
TGCTTGCAGAAATATAAGGA+AGG + Chr3:90045966-90045985 None:intergenic 35.0%
TGGTATAGTGTGTTTAGATG+GGG + Chr3:90044072-90044091 None:intergenic 35.0%
TGTATTAAAAGGGCAAGACA+CGG + Chr3:90042503-90042522 None:intergenic 35.0%
TGTGGTATAGTGTGTTTAGA+TGG + Chr3:90044074-90044093 None:intergenic 35.0%
TTAATCAAATCCACTAGGTG+GGG - Chr3:90043911-90043930 MsG0380016963.01.T01:intron 35.0%
TTACAAGTATACAAGCAGCA+AGG + Chr3:90049007-90049026 None:intergenic 35.0%
TTCTTGACAAGGAATCTGTT+TGG + Chr3:90047574-90047593 None:intergenic 35.0%
TTGAAGGAGTTGAAAAACAC+TGG - Chr3:90042675-90042694 MsG0380016963.01.T01:intron 35.0%
TTTACTATGCACGTTGTGAT+TGG + Chr3:90045178-90045197 None:intergenic 35.0%
TTTAGTGCAGATAAGGATGA+CGG - Chr3:90048455-90048474 MsG0380016963.01.T01:intron 35.0%
TTTGCCATCAACAGTAACAA+CGG + Chr3:90043116-90043135 None:intergenic 35.0%
TTTGGAGATTATGGAGCTAT+GGG + Chr3:90043669-90043688 None:intergenic 35.0%
! AGAATTTGAGGCAGATTGTT+AGG + Chr3:90048156-90048175 None:intergenic 35.0%
! AGCTCTTCGATTTGTAATGA+CGG - Chr3:90042737-90042756 MsG0380016963.01.T01:intron 35.0%
! AGTTCCAGTATGCTTTAGAT+TGG + Chr3:90048842-90048861 None:intergenic 35.0%
! ATATTTCTGCGCTGTATGTT+TGG - Chr3:90042975-90042994 MsG0380016963.01.T01:intron 35.0%
! CTACAAGTTTTCTTCATTGC+TGG - Chr3:90047873-90047892 MsG0380016963.01.T01:CDS 35.0%
! CTCCTTTTATGAGTAGGATA+TGG + Chr3:90043842-90043861 None:intergenic 35.0%
! CTTAACCTTTTTCTAGGTTC+AGG + Chr3:90044043-90044062 None:intergenic 35.0%
! GAATTTGAGGCAGATTGTTA+GGG + Chr3:90048155-90048174 None:intergenic 35.0%
! GGTGTTCTTAACCTTTTTCT+AGG + Chr3:90044049-90044068 None:intergenic 35.0%
! GTATCTTGACTTTGACCTTT+TGG + Chr3:90043547-90043566 None:intergenic 35.0%
! GTTTGAATATCTTTTCCCGA+AGG + Chr3:90042871-90042890 None:intergenic 35.0%
! GTTTTCAAAACTGAGTCTGT+TGG + Chr3:90043058-90043077 None:intergenic 35.0%
! TAAATGTGATATTTTGCCCC+CGG - Chr3:90048394-90048413 MsG0380016963.01.T01:intron 35.0%
! TAGTGCTGAGAATTGTCAAA+TGG - Chr3:90045622-90045641 MsG0380016963.01.T01:intron 35.0%
! TCCTTCAAAATAGGTTCTGA+TGG - Chr3:90045922-90045941 MsG0380016963.01.T01:intron 35.0%
! TGCTTTGTTCTTTCCTTTCT+CGG + Chr3:90043738-90043757 None:intergenic 35.0%
! TGTCTTGCCCTTTTAATACA+TGG - Chr3:90042503-90042522 MsG0380016963.01.T01:CDS 35.0%
! TTCAAAATAGGTTCTGATGG+AGG - Chr3:90045925-90045944 MsG0380016963.01.T01:intron 35.0%
! TTTTTATCTATCTGCGTGCA+CGG - Chr3:90046092-90046111 MsG0380016963.01.T01:intron 35.0%
!! AATTGCTTTTCCTTTCTCTG+CGG + Chr3:90042645-90042664 None:intergenic 35.0%
!! GAAAATGGCACTTTTTAGGA+TGG - Chr3:90043021-90043040 MsG0380016963.01.T01:CDS 35.0%
!! TCCATCAGAACCTATTTTGA+AGG + Chr3:90045926-90045945 None:intergenic 35.0%
!! TTGGAAAGTACCAGAATTTG+AGG + Chr3:90048168-90048187 None:intergenic 35.0%
!! TTTTATTTCTCAAGGAGGCA+TGG + Chr3:90045326-90045345 None:intergenic 35.0%
!! TTTTGGAGATTATGGAGCTA+TGG + Chr3:90043670-90043689 None:intergenic 35.0%
!!! AAGTTTGTTTTGGGAATGAG+TGG + Chr3:90046538-90046557 None:intergenic 35.0%
!!! AGTTTGTTTTGGGAATGAGT+GGG + Chr3:90046537-90046556 None:intergenic 35.0%
!!! ATCTTTTCTGATTTGGGTGT+TGG - Chr3:90044670-90044689 MsG0380016963.01.T01:intron 35.0%
!!! ATGCAAGTGTTTTTTTTGGC+TGG + Chr3:90043882-90043901 None:intergenic 35.0%
!!! CCTCATGCAAGTGTTTTTTT+TGG + Chr3:90043886-90043905 None:intergenic 35.0%
!!! CTGGCGTAGGTTTATTTTAT+TGG + Chr3:90045420-90045439 None:intergenic 35.0%
!!! GAGTGGGTTTTAATTTGAGT+GGG + Chr3:90046521-90046540 None:intergenic 35.0%
!!! TGAGTGGGTTTTAATTTGAG+TGG + Chr3:90046522-90046541 None:intergenic 35.0%
!!! TTTTTTCCCACTATCTAGGT+CGG - Chr3:90045727-90045746 MsG0380016963.01.T01:intron 35.0%
!!! TTTTTTGTTGGTTTGGCATG+CGG + Chr3:90043999-90044018 None:intergenic 35.0%
!!! TTTTTTTTTTGGTAGTGGCC+GGG - Chr3:90046813-90046832 MsG0380016963.01.T01:intron 35.0%
AAGAATGGAAAAGGTGGACA+AGG + Chr3:90043407-90043426 None:intergenic 40.0%
AAGATGGTTGAACTTCATGC+AGG - Chr3:90043085-90043104 MsG0380016963.01.T01:intron 40.0%
AAGTCATACTGGAGAGCTTA+TGG + Chr3:90047423-90047442 None:intergenic 40.0%
AATTTGAGTGGGTCGTTACA+AGG + Chr3:90046510-90046529 None:intergenic 40.0%
ACAAAGCAACCCGTTAGAAT+CGG + Chr3:90042171-90042190 None:intergenic 40.0%
ACTAAAACCCAAGCAAACAC+CGG + Chr3:90047797-90047816 None:intergenic 40.0%
ACTTTACCTCTATCAACCAC+CGG + Chr3:90044608-90044627 None:intergenic 40.0%
AGAATGGAAAAGGTGGACAA+GGG + Chr3:90043406-90043425 None:intergenic 40.0%
AGCTTATGAAAAGTAGGGGA+TGG + Chr3:90048233-90048252 None:intergenic 40.0%
AGTGAGAGCTCCTTCAAAAT+AGG - Chr3:90045913-90045932 MsG0380016963.01.T01:intron 40.0%
AGTTGTAGTTACACCTAAGG+TGG - Chr3:90046285-90046304 MsG0380016963.01.T01:intron 40.0%
ATCCCAAAACCTTTGCATCA+AGG + Chr3:90045773-90045792 None:intergenic 40.0%
CAAAAGAAAAATACCCCCAC+AGG - Chr3:90043685-90043704 MsG0380016963.01.T01:intron 40.0%
CATAATGATAGTTGTGGGGA+TGG + Chr3:90043222-90043241 None:intergenic 40.0%
CATAGCGTTTATGAGACTTC+AGG - Chr3:90047355-90047374 MsG0380016963.01.T01:intron 40.0%
CGGATTTCTTGTCATAACCT+TGG + Chr3:90042381-90042400 None:intergenic 40.0%
CGTCAGCTTATGAAAAGTAG+GGG + Chr3:90048237-90048256 None:intergenic 40.0%
CTCGTCAGCTTATGAAAAGT+AGG + Chr3:90048239-90048258 None:intergenic 40.0%
CTGTATATGAAGCTTGTCGT+CGG - Chr3:90042111-90042130 MsG0380016963.01.T01:three_prime_UTR 40.0%
CTTATGAAAAGTAGGGGATG+GGG + Chr3:90048231-90048250 None:intergenic 40.0%
CTTGTCATAACCTTGGAAAC+AGG + Chr3:90042374-90042393 None:intergenic 40.0%
GAACAAAGTGGGTATGGAAT+CGG + Chr3:90044136-90044155 None:intergenic 40.0%
GAAGGAGTTGAAAAACACTG+GGG - Chr3:90042677-90042696 MsG0380016963.01.T01:intron 40.0%
GAAGTCATTGCGTCTTTCAA+AGG - Chr3:90042064-90042083 MsG0380016963.01.T01:three_prime_UTR 40.0%
GAGAAAGGAAAGAACAAAGC+AGG - Chr3:90043737-90043756 MsG0380016963.01.T01:intron 40.0%
GCACTTCATACTATGCATGA+TGG - Chr3:90044566-90044585 MsG0380016963.01.T01:intron 40.0%
GCTTATGAAAAGTAGGGGAT+GGG + Chr3:90048232-90048251 None:intergenic 40.0%
GGCATGCTTGCAGAAATATA+AGG + Chr3:90045970-90045989 None:intergenic 40.0%
GGGGGCAAAATATCACATTT+AGG + Chr3:90048395-90048414 None:intergenic 40.0%
GGTATAGTGTGTTTAGATGG+GGG + Chr3:90044071-90044090 None:intergenic 40.0%
GTACAAGACACTATGGGATT+AGG - Chr3:90046242-90046261 MsG0380016963.01.T01:intron 40.0%
GTACGTCGACAGGAAAATTT+AGG - Chr3:90042531-90042550 MsG0380016963.01.T01:CDS 40.0%
GTATAGTGTGTTTAGATGGG+GGG + Chr3:90044070-90044089 None:intergenic 40.0%
GTCCTTTCTTTAGTAGAGTG+TGG + Chr3:90044092-90044111 None:intergenic 40.0%
GTCTCTGCAATTTGGACTAA+CGG - Chr3:90048571-90048590 MsG0380016963.01.T01:CDS 40.0%
GTTCAAGGGATATCTTGATG+CGG - Chr3:90043293-90043312 MsG0380016963.01.T01:intron 40.0%
TCAAAGGAACAAAGTGGGTA+TGG + Chr3:90044142-90044161 None:intergenic 40.0%
TCATCGTCATCATCATTTGG+AGG + Chr3:90045811-90045830 None:intergenic 40.0%
TGAATGATTGTGGACAGTGA+TGG + Chr3:90042893-90042912 None:intergenic 40.0%
TGAATGTACAAGGGTCTGTT+TGG - Chr3:90047305-90047324 MsG0380016963.01.T01:intron 40.0%
TGCATAAACTATGCAAGGTC+CGG + Chr3:90046848-90046867 None:intergenic 40.0%
TGCATACGAGTTTAGATACC+CGG - Chr3:90048076-90048095 MsG0380016963.01.T01:CDS 40.0%
TGGCAAATACTACGATTCCA+TGG - Chr3:90045642-90045661 MsG0380016963.01.T01:intron 40.0%
TGGCACCATTAAAGACTTGT+GGG + Chr3:90043805-90043824 None:intergenic 40.0%
TGTACATTGCTAGCTGTAGA+GGG + Chr3:90044881-90044900 None:intergenic 40.0%
TGTAGACTATCTGGAGATAC+CGG + Chr3:90043973-90043992 None:intergenic 40.0%
TTAACGCAAAGCAGACCAAA+AGG - Chr3:90043529-90043548 MsG0380016963.01.T01:intron 40.0%
TTCAAGGGATATCTTGATGC+GGG - Chr3:90043294-90043313 MsG0380016963.01.T01:intron 40.0%
TTGGAGATTATGGAGCTATG+GGG + Chr3:90043668-90043687 None:intergenic 40.0%
TTGTACATTGCTAGCTGTAG+AGG + Chr3:90044882-90044901 None:intergenic 40.0%
TTGTTTCCGACCTAGATAGT+GGG + Chr3:90045736-90045755 None:intergenic 40.0%
! AAGGCCAATCTAAAGCATAC+TGG - Chr3:90048835-90048854 MsG0380016963.01.T01:CDS 40.0%
! ATACTGATTGTTCGTAGCCT+TGG + Chr3:90046677-90046696 None:intergenic 40.0%
! ATGATGACGATGAAACACGA+AGG - Chr3:90045818-90045837 MsG0380016963.01.T01:intron 40.0%
! CACCTTGATGCAAAGGTTTT+GGG - Chr3:90045768-90045787 MsG0380016963.01.T01:intron 40.0%
! CGGAGTGATTTCATTTTCTC+TGG + Chr3:90043953-90043972 None:intergenic 40.0%
! GCCTTACTCCTTTTATGAGT+AGG + Chr3:90043848-90043867 None:intergenic 40.0%
! GTATGAAGTGCATCGACAAT+TGG + Chr3:90044557-90044576 None:intergenic 40.0%
! TGCACGGCAAAAGCATATAA+GGG - Chr3:90046108-90046127 MsG0380016963.01.T01:intron 40.0%
!! ATGGTATTGGTGTACTGTCA+AGG - Chr3:90045058-90045077 MsG0380016963.01.T01:intron 40.0%
!! TACAAGGAGTACTCAAATCC+AGG - Chr3:90043586-90043605 MsG0380016963.01.T01:intron 40.0%
!! TATTTTGAAGGAGCTCTCAC+TGG + Chr3:90045914-90045933 None:intergenic 40.0%
!!! CTGTGGGGGTATTTTTCTTT+TGG + Chr3:90043687-90043706 None:intergenic 40.0%
!!! TATGCTGTTTCTTTTCGTCC+TGG + Chr3:90043607-90043626 None:intergenic 40.0%
!!! TTTTCTGATTTGGGTGTTGG+TGG - Chr3:90044673-90044692 MsG0380016963.01.T01:intron 40.0%
!!! TTTTTTTTTGGTAGTGGCCG+GGG - Chr3:90046814-90046833 MsG0380016963.01.T01:intron 40.0%
AAACCTTTGCATCAAGGTGG+TGG + Chr3:90045767-90045786 None:intergenic 45.0%
AAATCCCACCATAGGTGGTT+TGG - Chr3:90047262-90047281 MsG0380016963.01.T01:intron 45.0%
AACTCGGCTGTTAGAAACTG+CGG + Chr3:90042793-90042812 None:intergenic 45.0%
ACACATGACCAAACCACCTA+TGG + Chr3:90047273-90047292 None:intergenic 45.0%
ACATTGCAATTGGCAGTGCA+CGG - Chr3:90045248-90045267 MsG0380016963.01.T01:CDS 45.0%
ACCATTAAAGACTTGTGGGC+TGG + Chr3:90043801-90043820 None:intergenic 45.0%
AGCAACACCACTATATGCTG+AGG + Chr3:90048724-90048743 None:intergenic 45.0%
AGCATCAACTCCTGTTGAGA+AGG - Chr3:90043339-90043358 MsG0380016963.01.T01:intron 45.0%
AGCATGCGTATTCAGATGCA+TGG - Chr3:90048697-90048716 MsG0380016963.01.T01:intron 45.0%
ATATGAAGCTTGTCGTCGGA+TGG - Chr3:90042115-90042134 MsG0380016963.01.T01:three_prime_UTR 45.0%
ATATGGCACCTCTTCTTTGC+TGG + Chr3:90043825-90043844 None:intergenic 45.0%
ATGACCAAACCACCTATGGT+GGG + Chr3:90047269-90047288 None:intergenic 45.0%
ATGCGGTTGTGTAGACTATC+TGG + Chr3:90043982-90044001 None:intergenic 45.0%
ATGCTACTGCACGTATGGAA+AGG - Chr3:90042618-90042637 MsG0380016963.01.T01:intron 45.0%
ATTTAGGCATCTACCTGTGG+TGG - Chr3:90042547-90042566 MsG0380016963.01.T01:intron 45.0%
CACTGGGGATCTTCTAATTC+TGG - Chr3:90042692-90042711 MsG0380016963.01.T01:intron 45.0%
CATAAACTATGCAAGGTCCG+GGG + Chr3:90046846-90046865 None:intergenic 45.0%
CCAAAACCTTTGCATCAAGG+TGG + Chr3:90045770-90045789 None:intergenic 45.0%
CCACAGCAAGAGTTTCAGAA+AGG + Chr3:90042412-90042431 None:intergenic 45.0%
CTAGTACACACAAAGGGGAT+GGG + Chr3:90045299-90045318 None:intergenic 45.0%
CTCTCCCTGAACCTAGAAAA+AGG - Chr3:90044035-90044054 MsG0380016963.01.T01:intron 45.0%
CTGGCACCATTAAAGACTTG+TGG + Chr3:90043806-90043825 None:intergenic 45.0%
CTTGAAGCGAGTTTGATCGA+AGG - Chr3:90048785-90048804 MsG0380016963.01.T01:CDS 45.0%
GAAAGAACCGGTGTTTGCTT+GGG - Chr3:90047787-90047806 MsG0380016963.01.T01:intron 45.0%
GAATTGGACAGGGGTTTAAC+AGG - Chr3:90042029-90042048 MsG0380016963.01.T01:three_prime_UTR 45.0%
GCATAAACTATGCAAGGTCC+GGG + Chr3:90046847-90046866 None:intergenic 45.0%
GCATGCGTATTCAGATGCAT+GGG - Chr3:90048698-90048717 MsG0380016963.01.T01:intron 45.0%
GGCAAATCCTACTACCTAGT+GGG - Chr3:90047758-90047777 MsG0380016963.01.T01:intron 45.0%
GGCATCGTTACGTAAGTTTG+TGG - Chr3:90043142-90043161 MsG0380016963.01.T01:intron 45.0%
GGTAGCCTAGTACACACAAA+GGG + Chr3:90045305-90045324 None:intergenic 45.0%
GTACATTGCTAGCTGTAGAG+GGG + Chr3:90044880-90044899 None:intergenic 45.0%
GTAGCCTAGTACACACAAAG+GGG + Chr3:90045304-90045323 None:intergenic 45.0%
GTCATCATCATTTGGAGGCA+AGG + Chr3:90045806-90045825 None:intergenic 45.0%
GTTCTGATGGAGGAGAAACA+GGG - Chr3:90045935-90045954 MsG0380016963.01.T01:intron 45.0%
TAAAAGGAGTAAGGCTGTCC+AGG - Chr3:90043853-90043872 MsG0380016963.01.T01:intron 45.0%
TACATTGCTAGCTGTAGAGG+GGG + Chr3:90044879-90044898 None:intergenic 45.0%
TAGTACACACAAAGGGGATG+GGG + Chr3:90045298-90045317 None:intergenic 45.0%
TATATTAGAGCCCCACCTAG+TGG + Chr3:90043924-90043943 None:intergenic 45.0%
TCAAACCAACAGTCCTTGCA+TGG + Chr3:90048339-90048358 None:intergenic 45.0%
TCACAGGAAAGGTTCACGTT+CGG - Chr3:90048665-90048684 MsG0380016963.01.T01:intron 45.0%
TCCAAAAGATGGTGCAAGGT+TGG - Chr3:90042438-90042457 MsG0380016963.01.T01:CDS 45.0%
TCCAGCCCACAAGTCTTTAA+TGG - Chr3:90043797-90043816 MsG0380016963.01.T01:intron 45.0%
TCTTGTACACAACACAGCCT+CGG + Chr3:90049061-90049080 None:intergenic 45.0%
TGAAGACACACCTGTTTCCA+AGG - Chr3:90042361-90042380 MsG0380016963.01.T01:three_prime_UTR 45.0%
TGAGCTTAGCTCAGTTGGTT+GGG + Chr3:90046875-90046894 None:intergenic 45.0%
TGCTACTGCACGTATGGAAA+GGG - Chr3:90042619-90042638 MsG0380016963.01.T01:intron 45.0%
TGGAGATTATGGAGCTATGG+GGG + Chr3:90043667-90043686 None:intergenic 45.0%
TGGCAAATCCTACTACCTAG+TGG - Chr3:90047757-90047776 MsG0380016963.01.T01:intron 45.0%
TGGTAGCCTAGTACACACAA+AGG + Chr3:90045306-90045325 None:intergenic 45.0%
TTAGACTATGAGGGAACACG+TGG - Chr3:90048642-90048661 MsG0380016963.01.T01:intron 45.0%
TTATAACCTCCGTCATGCTC+CGG + Chr3:90048098-90048117 None:intergenic 45.0%
TTGGAAACAGGTGTGTCTTC+AGG + Chr3:90042362-90042381 None:intergenic 45.0%
TTGTGGAATCCTCACAGACA+AGG - Chr3:90042187-90042206 MsG0380016963.01.T01:three_prime_UTR 45.0%
TTGTTCTTTCCTTTCTCGGC+TGG + Chr3:90043734-90043753 None:intergenic 45.0%
TTTAGATACCCGGAGCATGA+CGG - Chr3:90048086-90048105 MsG0380016963.01.T01:CDS 45.0%
! AACCTTGCACCATCTTTTGG+AGG + Chr3:90042439-90042458 None:intergenic 45.0%
! ACCAACCTTGCACCATCTTT+TGG + Chr3:90042442-90042461 None:intergenic 45.0%
! ACCTTGCACCATCTTTTGGA+GGG + Chr3:90042438-90042457 None:intergenic 45.0%
! AGAAGGAAAAGCGGCCATTT+TGG - Chr3:90044438-90044457 MsG0380016963.01.T01:intron 45.0%
! ATCATTTGTTGAGGCCCTTC+GGG - Chr3:90042853-90042872 MsG0380016963.01.T01:CDS 45.0%
! CATCATTTGTTGAGGCCCTT+CGG - Chr3:90042852-90042871 MsG0380016963.01.T01:CDS 45.0%
! CCACCTTGATGCAAAGGTTT+TGG - Chr3:90045767-90045786 MsG0380016963.01.T01:intron 45.0%
! CTTTTTCTAGGTTCAGGGAG+AGG + Chr3:90044037-90044056 None:intergenic 45.0%
! GGTGGAGAATGGAGAAGTTT+TGG - Chr3:90042565-90042584 MsG0380016963.01.T01:intron 45.0%
! GTGCACGGCAAAAGCATATA+AGG - Chr3:90046107-90046126 MsG0380016963.01.T01:intron 45.0%
! GTTGTTTCCGACCTAGATAG+TGG + Chr3:90045737-90045756 None:intergenic 45.0%
! TAATGGTGCCAGCAAAGAAG+AGG - Chr3:90043814-90043833 MsG0380016963.01.T01:intron 45.0%
! TGTGCCGTTGTTACTGTTGA+TGG - Chr3:90043109-90043128 MsG0380016963.01.T01:intron 45.0%
!! AACCACCTATGGTGGGATTT+TGG + Chr3:90047262-90047281 None:intergenic 45.0%
!! ACCACCTATGGTGGGATTTT+GGG + Chr3:90047261-90047280 None:intergenic 45.0%
!! ACTTGTGGGCTGGATAATAC+AGG + Chr3:90043791-90043810 None:intergenic 45.0%
!! CCTTTCTGAAACTCTTGCTG+TGG - Chr3:90042409-90042428 MsG0380016963.01.T01:CDS 45.0%
!! GAAGGAAAAGCGGCCATTTT+GGG - Chr3:90044439-90044458 MsG0380016963.01.T01:intron 45.0%
!! GATTCTAACGGGTTGCTTTG+TGG - Chr3:90042170-90042189 MsG0380016963.01.T01:three_prime_UTR 45.0%
!! TGCAAGGACTGTTGGTTTGA+AGG - Chr3:90048339-90048358 MsG0380016963.01.T01:intron 45.0%
!! TGTTGGTGGTTGGAAACAGA+TGG - Chr3:90044687-90044706 MsG0380016963.01.T01:intron 45.0%
!! TTCTCAACAGGAGTTGATGC+TGG + Chr3:90043340-90043359 None:intergenic 45.0%
!!! AAGGTTTTGGGATTCTGCCA+TGG - Chr3:90045780-90045799 MsG0380016963.01.T01:intron 45.0%
!!! CTGGTTTGGTTCTTTTGGGT+CGG + Chr3:90043715-90043734 None:intergenic 45.0%
!!! GGCGCTGTTTTTTGTTGGTT+TGG + Chr3:90044006-90044025 None:intergenic 45.0%
!!! GTCTAGGCGCTGTTTTTTGT+TGG + Chr3:90044011-90044030 None:intergenic 45.0%
!!! GTTTTTTTTGGCTGGTGACC+TGG + Chr3:90043874-90043893 None:intergenic 45.0%
!!! TCGGCTGGTTTGGTTCTTTT+GGG + Chr3:90043719-90043738 None:intergenic 45.0%
!! AAAAAATAAGTATAAATATA+AGG - Chr3:90047954-90047973 MsG0380016963.01.T01:intron 5.0%
!! AAAAATAAGTATAAATATAA+GGG - Chr3:90047955-90047974 MsG0380016963.01.T01:intron 5.0%
!!! ATATTTATACTTATTTTTTA+TGG + Chr3:90047953-90047972 None:intergenic 5.0%
!!! TATTTATACTTATTTTTTAT+GGG + Chr3:90047952-90047971 None:intergenic 5.0%
AAAGGCCTAAGCCAGCAACA+AGG + Chr3:90048758-90048777 None:intergenic 50.0%
AAGGCCTAAGCCAGCAACAA+GGG + Chr3:90048757-90048776 None:intergenic 50.0%
ACAGGGGTTTAACAGGAGAG+CGG - Chr3:90042036-90042055 MsG0380016963.01.T01:three_prime_UTR 50.0%
ACATGTGACTCATGCTGCTG+TGG - Chr3:90044737-90044756 MsG0380016963.01.T01:intron 50.0%
ACATTGCTAGCTGTAGAGGG+GGG + Chr3:90044878-90044897 None:intergenic 50.0%
ACCCAAAATCCCACCATAGG+TGG - Chr3:90047257-90047276 MsG0380016963.01.T01:intron 50.0%
ACTCGGCTGTTAGAAACTGC+GGG + Chr3:90042792-90042811 None:intergenic 50.0%
ACTTACGTAACGATGCCTCG+AGG + Chr3:90043139-90043158 None:intergenic 50.0%
ACTTCTCCATTCTCCACCAC+AGG + Chr3:90042563-90042582 None:intergenic 50.0%
AGAACCAAACCAGCCGAGAA+AGG - Chr3:90043722-90043741 MsG0380016963.01.T01:intron 50.0%
AGTCACACACCTTGTCTGTG+AGG + Chr3:90042199-90042218 None:intergenic 50.0%
AGTGGGAAGTGGGAAAGAAC+CGG - Chr3:90047775-90047794 MsG0380016963.01.T01:intron 50.0%
ATCATTTGGAGGCAAGGCCA+TGG + Chr3:90045800-90045819 None:intergenic 50.0%
ATGGGGAAATGAGTGCACTG+CGG + Chr3:90045281-90045300 None:intergenic 50.0%
CACACCCAAAATCCCACCAT+AGG - Chr3:90047254-90047273 MsG0380016963.01.T01:intron 50.0%
CACAGGAAAGGTTCACGTTC+GGG - Chr3:90048666-90048685 MsG0380016963.01.T01:intron 50.0%
CATGACCAAACCACCTATGG+TGG + Chr3:90047270-90047289 None:intergenic 50.0%
CATTGCAATTGGCAGTGCAC+GGG - Chr3:90045249-90045268 MsG0380016963.01.T01:CDS 50.0%
CCATCCCCTTTGTGTGTACT+AGG - Chr3:90045297-90045316 MsG0380016963.01.T01:intron 50.0%
CCTACTACCTAGTGGGAAGT+GGG - Chr3:90047765-90047784 MsG0380016963.01.T01:intron 50.0%
CCTAGTACACACAAAGGGGA+TGG + Chr3:90045300-90045319 None:intergenic 50.0%
CTTCCACCACCTTGATGCAA+AGG - Chr3:90045761-90045780 MsG0380016963.01.T01:intron 50.0%
GAGATTATGGAGCTATGGGG+GGG + Chr3:90043665-90043684 None:intergenic 50.0%
GATGCTACATTTGACAGGCC+TGG + Chr3:90045439-90045458 None:intergenic 50.0%
GCAATTGCAGCAGCTGTTGA+AGG - Chr3:90042659-90042678 MsG0380016963.01.T01:intron 50.0%
GCCTCATCACTTATTTGCCG+AGG - Chr3:90049041-90049060 MsG0380016963.01.T01:CDS 50.0%
GCCTCGGCAAATAAGTGATG+AGG + Chr3:90049045-90049064 None:intergenic 50.0%
GGAAACAGATGGCATGGTAG+TGG - Chr3:90044698-90044717 MsG0380016963.01.T01:intron 50.0%
GGAAAGAACCGGTGTTTGCT+TGG - Chr3:90047786-90047805 MsG0380016963.01.T01:intron 50.0%
GGAGATTATGGAGCTATGGG+GGG + Chr3:90043666-90043685 None:intergenic 50.0%
GTGAGCTTAGCTCAGTTGGT+TGG + Chr3:90046876-90046895 None:intergenic 50.0%
GTGGCTACTGTTAGTCAGGT+GGG - Chr3:90044756-90044775 MsG0380016963.01.T01:intron 50.0%
GTGGTTGGAAACAGATGGCA+TGG - Chr3:90044692-90044711 MsG0380016963.01.T01:intron 50.0%
GTTCAGGGAGAGGTAAGTCT+AGG + Chr3:90044027-90044046 None:intergenic 50.0%
GTTCTTTCCCACTTCCCACT+AGG + Chr3:90047775-90047794 None:intergenic 50.0%
TATAACCTCCGTCATGCTCC+GGG + Chr3:90048097-90048116 None:intergenic 50.0%
TCCTACTACCTAGTGGGAAG+TGG - Chr3:90047764-90047783 MsG0380016963.01.T01:intron 50.0%
TCTGTTCCTTTGAGTGCGCT+CGG - Chr3:90045208-90045227 MsG0380016963.01.T01:CDS 50.0%
TGCTGTGGCTACTGTTAGTC+AGG - Chr3:90044752-90044771 MsG0380016963.01.T01:intron 50.0%
TGTGGAAGCCCTCCAAAAGA+TGG - Chr3:90042427-90042446 MsG0380016963.01.T01:CDS 50.0%
TGTGGCTACTGTTAGTCAGG+TGG - Chr3:90044755-90044774 MsG0380016963.01.T01:intron 50.0%
! CATCTACCTGTGGTGGAGAA+TGG - Chr3:90042554-90042573 MsG0380016963.01.T01:intron 50.0%
! CTTTCCTTTCTCGGCTGGTT+TGG + Chr3:90043729-90043748 None:intergenic 50.0%
! GGTTCTGATGGAGGAGAAAC+AGG - Chr3:90045934-90045953 MsG0380016963.01.T01:intron 50.0%
! GTAATAGAGCATCCACCCTC+CGG + Chr3:90042145-90042164 None:intergenic 50.0%
! TAATAGAGCATCCACCCTCC+GGG + Chr3:90042144-90042163 None:intergenic 50.0%
!! ACTGTTGATGGCAAACCTCG+AGG - Chr3:90043121-90043140 MsG0380016963.01.T01:intron 50.0%
!! CATCTTCCGGTGGTTGATAG+AGG - Chr3:90044599-90044618 MsG0380016963.01.T01:intron 50.0%
!! CTGATTTGGGTGTTGGTGGT+TGG - Chr3:90044677-90044696 MsG0380016963.01.T01:intron 50.0%
!! GCATATAGTGGTGTTGCTGC+CGG - Chr3:90048726-90048745 MsG0380016963.01.T01:intron 50.0%
!! GGTGGGATTTTGGGTGTGTT+TGG + Chr3:90047252-90047271 None:intergenic 50.0%
!! TCAACAGGAGTTGATGCTGG+TGG + Chr3:90043337-90043356 None:intergenic 50.0%
!! TTTTGGGTCGGAGATCCTGT+GGG + Chr3:90043703-90043722 None:intergenic 50.0%
!!! CTCGGCTGGTTTGGTTCTTT+TGG + Chr3:90043720-90043739 None:intergenic 50.0%
AAAGAGGACTGCTGAGCTGC+AGG + Chr3:90043180-90043199 None:intergenic 55.0%
AACCAACCGAGCGCACTCAA+AGG + Chr3:90045217-90045236 None:intergenic 55.0%
ACATTTGACAGGCCTGGCGT+AGG + Chr3:90045433-90045452 None:intergenic 55.0%
AGGCTGCGGGACATTGCAAT+TGG - Chr3:90045238-90045257 MsG0380016963.01.T01:CDS 55.0%
ATGAGGGAACACGTGGTCAC+AGG - Chr3:90048649-90048668 MsG0380016963.01.T01:intron 55.0%
ATGGAAAGGGCCGCAGAGAA+AGG - Chr3:90042632-90042651 MsG0380016963.01.T01:intron 55.0%
ATGGAGCTATGGGGGGGTTT+AGG + Chr3:90043659-90043678 None:intergenic 55.0%
CATGGCTGATGTACGTCGAC+AGG - Chr3:90042521-90042540 MsG0380016963.01.T01:CDS 55.0%
CCAACTGAGCTAAGCTCACG+AGG - Chr3:90046877-90046896 MsG0380016963.01.T01:intron 55.0%
CCCACTTCCCACTAGGTAGT+AGG + Chr3:90047768-90047787 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + Chr3:90046880-90046899 None:intergenic 55.0%
GAGGGGGGTTCCATAATTGC+AGG + Chr3:90044863-90044882 None:intergenic 55.0%
GCACGATGCTACTGCACGTA+TGG - Chr3:90042613-90042632 MsG0380016963.01.T01:intron 55.0%
GCATGGGCCTCAGCATATAG+TGG - Chr3:90048714-90048733 MsG0380016963.01.T01:intron 55.0%
GCCCTCCAAAAGATGGTGCA+AGG - Chr3:90042434-90042453 MsG0380016963.01.T01:CDS 55.0%
GGAACACGTGGTCACAGGAA+AGG - Chr3:90048654-90048673 MsG0380016963.01.T01:intron 55.0%
GTGGACCATGCAAGGACTGT+TGG - Chr3:90048331-90048350 MsG0380016963.01.T01:intron 55.0%
TATCTGCGCCCGTCTGACTA+CGG + Chr3:90043767-90043786 None:intergenic 55.0%
TTCCTTTGAGTGCGCTCGGT+TGG - Chr3:90045212-90045231 MsG0380016963.01.T01:CDS 55.0%
TTTGGGTCGGAGATCCTGTG+GGG + Chr3:90043702-90043721 None:intergenic 55.0%
!! AGATGGCATGGTAGTGGCTG+TGG - Chr3:90044704-90044723 MsG0380016963.01.T01:intron 55.0%
!! CTTTTGGGTCGGAGATCCTG+TGG + Chr3:90043704-90043723 None:intergenic 55.0%
AAGGTCCGGGGTTCAAACCC+CGG + Chr3:90046834-90046853 None:intergenic 60.0%
AGATACCCGGAGCATGACGG+AGG - Chr3:90048089-90048108 MsG0380016963.01.T01:CDS 60.0%
CAGGCTGACCGTAGTCAGAC+GGG - Chr3:90043756-90043775 MsG0380016963.01.T01:intron 60.0%
CAGTGATCTTGCCGCAGCTG+TGG - Chr3:90048312-90048331 MsG0380016963.01.T01:CDS 60.0%
CCTTGCATGGTCCACAGCTG+CGG + Chr3:90048326-90048345 None:intergenic 60.0%
GCAGGCTGACCGTAGTCAGA+CGG - Chr3:90043755-90043774 MsG0380016963.01.T01:intron 60.0%
TTGGGTCGGAGATCCTGTGG+GGG + Chr3:90043701-90043720 None:intergenic 60.0%
! TGAGTGCGCTCGGTTGGTTG+AGG - Chr3:90045218-90045237 MsG0380016963.01.T01:CDS 60.0%
!! GCTGCCCTTGTTGCTGGCTT+AGG - Chr3:90048750-90048769 MsG0380016963.01.T01:CDS 60.0%
AGTGGCCGGGGTTTGAACCC+CGG - Chr3:90046826-90046845 MsG0380016963.01.T01:intron 65.0%
CCGCAGCTGTGGACCATGCA+AGG - Chr3:90048323-90048342 MsG0380016963.01.T01:CDS 65.0%
CTTGTCGTCGGATGGCTGCC+CGG - Chr3:90042123-90042142 MsG0380016963.01.T01:three_prime_UTR 65.0%
GCCAGCAACAAGGGCAGCTC+CGG + Chr3:90048748-90048767 None:intergenic 65.0%
! CGCTCGGTTGGTTGAGGCTG+CGG - Chr3:90045224-90045243 MsG0380016963.01.T01:CDS 65.0%
! GCTCGGTTGGTTGAGGCTGC+GGG - Chr3:90045225-90045244 MsG0380016963.01.T01:CDS 65.0%
GCCGGAGCTGCCCTTGTTGC+TGG - Chr3:90048744-90048763 MsG0380016963.01.T01:CDS 70.0%
TCGTCGGATGGCTGCCCGGA+GGG - Chr3:90042127-90042146 MsG0380016963.01.T01:three_prime_UTR 70.0%
GTCGTCGGATGGCTGCCCGG+AGG - Chr3:90042126-90042145 MsG0380016963.01.T01:three_prime_UTR 75.0%
TCGGATGGCTGCCCGGAGGG+TGG - Chr3:90042130-90042149 MsG0380016963.01.T01:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 90042026 90049163 90042026 ID=MsG0380016963.01;Name=MsG0380016963.01
Chr3 mRNA 90042026 90049163 90042026 ID=MsG0380016963.01.T01;Parent=MsG0380016963.01;Name=MsG0380016963.01.T01;_AED=0.40;_eAED=0.41;_QI=0|1|0.92|1|1|1|13|363|500
Chr3 exon 90042026 90042562 90042026 ID=MsG0380016963.01.T01:exon:12383;Parent=MsG0380016963.01.T01
Chr3 exon 90042829 90042918 90042829 ID=MsG0380016963.01.T01:exon:12382;Parent=MsG0380016963.01.T01
Chr3 exon 90043013 90043098 90043013 ID=MsG0380016963.01.T01:exon:12381;Parent=MsG0380016963.01.T01
Chr3 exon 90045141 90045274 90045141 ID=MsG0380016963.01.T01:exon:12380;Parent=MsG0380016963.01.T01
Chr3 exon 90045350 90045444 90045350 ID=MsG0380016963.01.T01:exon:12379;Parent=MsG0380016963.01.T01
Chr3 exon 90046416 90046483 90046416 ID=MsG0380016963.01.T01:exon:12378;Parent=MsG0380016963.01.T01
Chr3 exon 90046569 90046674 90046569 ID=MsG0380016963.01.T01:exon:12377;Parent=MsG0380016963.01.T01
Chr3 exon 90047829 90047895 90047829 ID=MsG0380016963.01.T01:exon:12376;Parent=MsG0380016963.01.T01
Chr3 exon 90048037 90048150 90048037 ID=MsG0380016963.01.T01:exon:12375;Parent=MsG0380016963.01.T01
Chr3 exon 90048265 90048346 90048265 ID=MsG0380016963.01.T01:exon:12374;Parent=MsG0380016963.01.T01
Chr3 exon 90048476 90048646 90048476 ID=MsG0380016963.01.T01:exon:12373;Parent=MsG0380016963.01.T01
Chr3 exon 90048734 90048866 90048734 ID=MsG0380016963.01.T01:exon:12372;Parent=MsG0380016963.01.T01
Chr3 exon 90048981 90049163 90048981 ID=MsG0380016963.01.T01:exon:12371;Parent=MsG0380016963.01.T01
Chr3 CDS 90048981 90049163 90048981 ID=MsG0380016963.01.T01:cds;Parent=MsG0380016963.01.T01
Chr3 CDS 90048734 90048866 90048734 ID=MsG0380016963.01.T01:cds;Parent=MsG0380016963.01.T01
Chr3 CDS 90048476 90048646 90048476 ID=MsG0380016963.01.T01:cds;Parent=MsG0380016963.01.T01
Chr3 CDS 90048265 90048346 90048265 ID=MsG0380016963.01.T01:cds;Parent=MsG0380016963.01.T01
Chr3 CDS 90048037 90048150 90048037 ID=MsG0380016963.01.T01:cds;Parent=MsG0380016963.01.T01
Chr3 CDS 90047829 90047895 90047829 ID=MsG0380016963.01.T01:cds;Parent=MsG0380016963.01.T01
Chr3 CDS 90046569 90046674 90046569 ID=MsG0380016963.01.T01:cds;Parent=MsG0380016963.01.T01
Chr3 CDS 90046416 90046483 90046416 ID=MsG0380016963.01.T01:cds;Parent=MsG0380016963.01.T01
Chr3 CDS 90045350 90045444 90045350 ID=MsG0380016963.01.T01:cds;Parent=MsG0380016963.01.T01
Chr3 CDS 90045141 90045274 90045141 ID=MsG0380016963.01.T01:cds;Parent=MsG0380016963.01.T01
Chr3 CDS 90043013 90043098 90043013 ID=MsG0380016963.01.T01:cds;Parent=MsG0380016963.01.T01
Chr3 CDS 90042829 90042918 90042829 ID=MsG0380016963.01.T01:cds;Parent=MsG0380016963.01.T01
Chr3 CDS 90042389 90042562 90042389 ID=MsG0380016963.01.T01:cds;Parent=MsG0380016963.01.T01
Chr3 three_prime_UTR 90042026 90042388 90042026 ID=MsG0380016963.01.T01:three_prime_utr;Parent=MsG0380016963.01.T01
Gene Sequence

>MsG0380016963.01.T01

ATGGAATTGGACAGGGGTTTAACAGGAGAGCGGACAGTGAAGTCATTGCGTCTTTCAAAGGCTCTGACAGTACCCGAAACAACAACTGTATATGAAGCTTGTCGTCGGATGGCTGCCCGGAGGGTGGATGCTCTATTACTAACCGATTCTAACGGGTTGCTTTGTGGAATCCTCACAGACAAGGATATAGCAACAAAAGTTGTTGCCGAAGAGATAAATCCTGAAGACACACCTGTTTCCAAGGTTATGACAAGAAATCCGGTATTTGTCCTTTCTGAAACTCTTGCTGTGGAAGCCCTCCAAAAGATGGTGCAAGGAAAATTTAGGCATCTACCTGTGGTGGAGAATGGAGAAGTTTTGGCTTTACTCGACATAGCAAAGTGTTTGCACGATGCTACTGCACGTATGGAAAGGGCCGCAGAGAAAGGAAAAGCAATTGCAGCAGCTGTTGAAGGAGTTGAAAAACACTGGGGATCTTCTAATTCTGACTCTAATTCATCATTTGTTGAGGCCCTTCGGGAAAAGATATTCAAACCATCACTGTCCACAATCATTCATGAGAATTCAAAGATGGTAACAGTTGCACCAACAGACTCAGTTTTGAAAACAACAAAGAAGATGGTTGAACTTCATGCAGGTTGTGCCGTTGTTACTGTTGATGGCAAACCTCGAGGCATCGTTACTTCAAGGGATATCTTGATGCGGGTAGTTGCACAGAATCTTCCACCAGCATCAACTCCTGTTGAGAAGGTCATGACTCCAAATCCAGAATGTGTAATAATTGATACACCAATTGTCGATGCACTTCATACTATGCATGATGGAAAATTTTTACATCTTCCGGTGGTTGATAGAGATGGCATGGTAGTGGCTGTGGTCGACGTGATACATGTGACTCATGCTGCTGTGGCTACTGTTAGTCAGGTCGGAAACAACGAAGCTTCCACCACCTTGATGCAAAGGTTTTGGGATTCTGCCATGGCCTTGCCTCCAAATGATGATGACGATGAAACACGAAGTGAGAGCTCCTTCAAAATAGGTTCTGATGGAGGAGAAACAGGGAGATCCCTTCCTTATATTTCTGCAAGCATGCCCAATACATTTTCCTTCAAAGTACAAGATAAAAAGGGCAGAATGCATAGATTCACATGTGATACCCGGAGCATGACGGAGGTTATAAGTTCTATCCTTCAAAGACTTGGTACTGATATTGACCCTAACAATCTGCCTCAAATTCTGTATGAAGATGAAGACCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTTGCCGCAGCTGTGGACCATGCAAGGACTGTTGGTTTGAAGGGATTGAAATTGTATTTAGACTATGAGGGAACACGTGGTCACAGGAAAGGTTCACGTTCGGGAAGTTTAGAGCATGCGTATTCAGATGCATGGGCCTCAGCATATAGTGGTGTTGCTGCCGGAGCTGCCCTTGTTGCTGGCTTAGGCCTTTTAACATACTTGAAGCGAGTTTGA
Protein sequence

>MsG0380016963.01.T01

MELDRGLTGERTVKSLRLSKALTVPETTTVYEACRRMAARRVDALLLTDSNGLLCGILTDKDIATKVVAEEINPEDTPVSKVMTRNPVFVLSETLAVEALQKMVQGKFRHLPVVENGEVLALLDIAKCLHDATARMERAAEKGKAIAAAVEGVEKHWGSSNSDSNSSFVEALREKIFKPSLSTIIHENSKMVTVAPTDSVLKTTKKMVELHAGCAVVTVDGKPRGIVTSRDILMRVVAQNLPPASTPVEKVMTPNPECVIIDTPIVDALHTMHDGKFLHLPVVDRDGMVVAVVDVIHVTHAAVATVSQVGNNEASTTLMQRFWDSAMALPPNDDDDETRSESSFKIGSDGGETGRSLPYISASMPNTFSFKVQDKKGRMHRFTCDTRSMTEVISSILQRLGTDIDPNNLPQILYEDEDHDKVVLASDSDLAAAVDHARTVGLKGLKLYLDYEGTRGHRKGSRSGSLEHAYSDAWASAYSGVAAGAALVAGLGLLTYLKRV*