AlfalfaGEDB | MsG0380015366.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015366.01

KEGG: K08081
GO: GO:0016491
PFAM: PF13561

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015366.01.T01	XP_013460719.2	97.093	172	5	0	6	177	102	273	6.32E-119	347

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015366.01.T01	Q9LHT0	65.294	170	59	0	6	175	94	263	2.83E-81	244

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015366.01.T01	A0A396IZB6	97.093	172	5	0	6	177	102	273	3.02e-119	347

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000139.01	MsG0380015366.01	0.818064	2.382014e-52	1.764684e-49
MsG0280008391.01	MsG0380015366.01	0.800041	1.735643e-48	8.000535e-46
MsG0380012122.01	MsG0380015366.01	0.803930	2.755666e-49	1.402512e-46
MsG0380015366.01	MsG0380015435.01	0.800007	1.763702e-48	8.122811e-46
MsG0380015366.01	MsG0380016126.01	0.812659	3.792283e-51	2.425268e-48
MsG0380015366.01	MsG0380016505.01	0.807591	4.690009e-50	2.622526e-47
MsG0380015366.01	MsG0380016671.01	0.824578	7.480697e-54	6.653448e-51
MsG0380015366.01	MsG0380017258.01	0.806996	6.271494e-50	3.453110e-47
MsG0380015366.01	MsG0580025772.01	0.805591	1.239690e-49	6.584444e-47
MsG0380015366.01	MsG0580028630.01	0.833999	3.860798e-56	4.521962e-53

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015366.01.T01	MTR_3g068175	96.512	172	6	0	6	177	102	273	2.66e-121	343
MsG0380015366.01.T01	MTR_3g068175	94.318	176	6	1	6	177	102	277	4.09e-119	338
MsG0380015366.01.T01	MTR_3g068155	81.395	172	32	0	6	177	104	275	6.31e-103	297
MsG0380015366.01.T01	MTR_3g068085	74.419	172	44	0	6	177	100	271	1.45e-95	278
MsG0380015366.01.T01	MTR_3g068070	72.727	165	45	0	6	170	100	264	2.40e-88	259
MsG0380015366.01.T01	MTR_3g068065	71.345	171	49	0	6	176	102	272	3.19e-87	257
MsG0380015366.01.T01	MTR_4g064883	61.310	168	65	0	6	173	99	266	3.07e-75	226
MsG0380015366.01.T01	MTR_4g064887	61.963	163	62	0	6	168	100	262	7.83e-73	220
MsG0380015366.01.T01	MTR_7g063320	56.098	164	68	1	6	165	100	263	4.70e-61	190
MsG0380015366.01.T01	MTR_7g063270	54.268	164	72	1	6	166	101	264	2.21e-56	178

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015366.01.T01	AT5G06060	65.294	170	59	0	6	175	94	263	2.88e-82	244
MsG0380015366.01.T01	AT2G29340	62.573	171	62	1	6	174	92	262	2.05e-74	224
MsG0380015366.01.T01	AT2G29290	63.314	169	60	1	6	172	75	243	8.35e-74	222
MsG0380015366.01.T01	AT2G29340	63.314	169	60	1	6	172	92	260	8.91e-74	224
MsG0380015366.01.T01	AT2G29290	63.314	169	60	1	6	172	92	260	1.64e-73	222
MsG0380015366.01.T01	AT1G07440	63.314	169	59	2	6	172	97	264	1.40e-72	219
MsG0380015366.01.T01	AT2G29260	59.880	167	67	0	6	172	153	319	3.10e-71	218
MsG0380015366.01.T01	AT2G29330	62.722	169	61	1	6	172	92	260	1.07e-70	214
MsG0380015366.01.T01	AT2G30670	62.424	165	62	0	6	170	92	256	1.40e-70	214
MsG0380015366.01.T01	AT2G29320	62.353	170	61	2	6	172	80	249	1.74e-70	214

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Find 39 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATTACATGTTCAACAAG+TGG	0.561131	3:+69093395	None:intergenic
AAGACGCAGCTGGCAGACAA+AGG	0.618321	3:+69092486	None:intergenic
AATGGGCAAAAGATGGCATA+AGG	0.531839	3:-69093451	MsG0380015366.01.T01:CDS
ACTTACACATCCTCTTCTAA+AGG	0.534266	3:-69093703	MsG0380015366.01.T01:CDS
AGTGGTGTATTGGTGGTAGC+AGG	0.515667	3:+69093413	None:intergenic
ATAATGTTGGAGCAAACTAT+AGG	0.512853	3:-69093806	MsG0380015366.01.T01:CDS
ATATTATGTTATTCTCATAC+TGG	0.336425	3:+69092406	None:intergenic
ATCAACACAAATAACTTGTC+CGG	0.496880	3:+69092457	None:intergenic
ATCTCATGAAGTTTCGTCGT+TGG	0.509818	3:-69092516	MsG0380015366.01.T01:CDS
ATGTTATTCTCATACTGGGC+TGG	0.485858	3:+69092411	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATTACATGTTCAACAAG+TGG	+	Chr3:69092842-69092861	None:intergenic	30.0%
AACTTGACTTAAAGTTGCTA+TGG	-	Chr3:69093481-69093500	MsG0380015366.01.T01:CDS	30.0%
ATAATGTTGGAGCAAACTAT+AGG	-	Chr3:69092428-69092447	MsG0380015366.01.T01:CDS	30.0%
CACTCAGCTTACAAAAAATT+TGG	-	Chr3:69092754-69092773	MsG0380015366.01.T01:intron	30.0%
CACTGCACAAATAATAATAG+AGG	+	Chr3:69093350-69093369	None:intergenic	30.0%
CTCTAGATTGAATCTAAACA+TGG	-	Chr3:69092999-69093018	MsG0380015366.01.T01:intron	30.0%
GACACATTGTATACAAAATC+AGG	+	Chr3:69093394-69093413	None:intergenic	30.0%
GCAAGATATTTATGAAACAG+AGG	+	Chr3:69093103-69093122	None:intergenic	30.0%
TAGGTCAAAGATAACATAGT+TGG	-	Chr3:69092965-69092984	MsG0380015366.01.T01:intron	30.0%
AATAATAGAGGATTGGAGGA+TGG	+	Chr3:69093338-69093357	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	69092409	69093847	69092409	ID=MsG0380015366.01;Name=MsG0380015366.01
Chr3	mRNA	69092409	69093847	69092409	ID=MsG0380015366.01.T01;Parent=MsG0380015366.01;Name=MsG0380015366.01.T01;_AED=0.49;_eAED=0.50;_QI=0\|0\|0\|1\|1\|1\|3\|0\|177
Chr3	exon	69093616	69093847	69093616	ID=MsG0380015366.01.T01:exon:23432;Parent=MsG0380015366.01.T01
Chr3	exon	69093403	69093509	69093403	ID=MsG0380015366.01.T01:exon:23431;Parent=MsG0380015366.01.T01
Chr3	exon	69092409	69092603	69092409	ID=MsG0380015366.01.T01:exon:23430;Parent=MsG0380015366.01.T01
Chr3	CDS	69093616	69093847	69093616	ID=MsG0380015366.01.T01:cds;Parent=MsG0380015366.01.T01
Chr3	CDS	69093403	69093509	69093403	ID=MsG0380015366.01.T01:cds;Parent=MsG0380015366.01.T01
Chr3	CDS	69092409	69092603	69092409	ID=MsG0380015366.01.T01:cds;Parent=MsG0380015366.01.T01

Gene Sequence

>MsG0380015366.01.T01

TTGATCTCATCACAGGTGAATAATGTTGGAGCAAACTATAGGAAACCAACCATTGAGTACACTGCTGAAGTATATTCAGAAATTATGGGAATTAATGTAGAATCTGCATATCATTTGTGTCAACTTACACATCCTCTTCTAAAGGCATCTGGAATGGGAAGCATTGTATTCATTTCCTCTATTGCTGGTGTGGTGAGCTTAGGTACTGGATCAGTCTATGCAGCAAGTAAAGCTGCCATCACTCAGCTTACAAAAAATTTGGCTTGTGAATGGGCAAAAGATGGCATAAGGAGCAATTGTGTTGTTCCTGCTACCACCAATACACCACTTGTTGAACATCTGCTTCGCAACAAGCAATATATGGATGAAATGTTGTCTCGAACTCCTCTTGGACGCATCGCAGAATCTCATGAAGTTTCGTCGTTGGTGGCTTTCCTTTGTCTGCCAGCTGCGTCTTACATCACCGGACAAGTTATTTGTGTTGATGGAGGATTAACTGTGAATGGATTCCAGCCCAGTATGAGAATAACATAA

Protein sequence

>MsG0380015366.01.T01

LISSQVNNVGANYRKPTIEYTAEVYSEIMGINVESAYHLCQLTHPLLKASGMGSIVFISSIAGVVSLGTGSVYAASKAAITQLTKNLACEWAKDGIRSNCVVPATTNTPLVEHLLRNKQYMDEMLSRTPLGRIAESHEVSSLVAFLCLPAASYITGQVICVDGGLTVNGFQPSMRIT*