Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015366.01.T01 | XP_013460719.2 | 97.093 | 172 | 5 | 0 | 6 | 177 | 102 | 273 | 6.32E-119 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015366.01.T01 | Q9LHT0 | 65.294 | 170 | 59 | 0 | 6 | 175 | 94 | 263 | 2.83E-81 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015366.01.T01 | A0A396IZB6 | 97.093 | 172 | 5 | 0 | 6 | 177 | 102 | 273 | 3.02e-119 | 347 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000139.01 | MsG0380015366.01 | 0.818064 | 2.382014e-52 | 1.764684e-49 |
| MsG0380012122.01 | MsG0380015366.01 | 0.803930 | 2.755666e-49 | 1.402512e-46 |
| MsG0380015366.01 | MsG0380015435.01 | 0.800007 | 1.763702e-48 | 8.122811e-46 |
| MsG0380015366.01 | MsG0380016126.01 | 0.812659 | 3.792283e-51 | 2.425268e-48 |
| MsG0380015366.01 | MsG0380016505.01 | 0.807591 | 4.690009e-50 | 2.622526e-47 |
| MsG0380015366.01 | MsG0380016671.01 | 0.824578 | 7.480697e-54 | 6.653448e-51 |
| MsG0380015366.01 | MsG0380017258.01 | 0.806996 | 6.271494e-50 | 3.453110e-47 |
| MsG0380015366.01 | MsG0580025772.01 | 0.805591 | 1.239690e-49 | 6.584444e-47 |
| MsG0380015366.01 | MsG0580028630.01 | 0.833999 | 3.860798e-56 | 4.521962e-53 |
| MsG0380015366.01 | MsG0680030882.01 | 0.808277 | 3.351657e-50 | 1.908417e-47 |
| MsG0380015366.01 | MsG0680035498.01 | 0.820296 | 7.393622e-53 | 5.827162e-50 |
| MsG0380015366.01 | MsG0780036486.01 | 0.818774 | 1.644250e-52 | 1.242306e-49 |
| MsG0380015366.01 | MsG0780036659.01 | 0.801179 | 1.017301e-48 | 4.826678e-46 |
| MsG0380015366.01 | MsG0780037093.01 | 0.808567 | 2.907422e-50 | 1.667964e-47 |
| MsG0380015366.01 | MsG0780041440.01 | 0.804364 | 2.237946e-49 | 1.151718e-46 |
| MsG0380015366.01 | MsG0780041692.01 | 0.809031 | 2.312649e-50 | 1.343139e-47 |
| MsG0380015366.01 | MsG0880044142.01 | 0.808996 | 2.353385e-50 | 1.365476e-47 |
| MsG0280008391.01 | MsG0380015366.01 | 0.800041 | 1.735643e-48 | 8.000535e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015366.01.T01 | MTR_3g068175 | 96.512 | 172 | 6 | 0 | 6 | 177 | 102 | 273 | 2.66e-121 | 343 |
| MsG0380015366.01.T01 | MTR_3g068175 | 94.318 | 176 | 6 | 1 | 6 | 177 | 102 | 277 | 4.09e-119 | 338 |
| MsG0380015366.01.T01 | MTR_3g068155 | 81.395 | 172 | 32 | 0 | 6 | 177 | 104 | 275 | 6.31e-103 | 297 |
| MsG0380015366.01.T01 | MTR_3g068085 | 74.419 | 172 | 44 | 0 | 6 | 177 | 100 | 271 | 1.45e-95 | 278 |
| MsG0380015366.01.T01 | MTR_3g068070 | 72.727 | 165 | 45 | 0 | 6 | 170 | 100 | 264 | 2.40e-88 | 259 |
| MsG0380015366.01.T01 | MTR_3g068065 | 71.345 | 171 | 49 | 0 | 6 | 176 | 102 | 272 | 3.19e-87 | 257 |
| MsG0380015366.01.T01 | MTR_4g064883 | 61.310 | 168 | 65 | 0 | 6 | 173 | 99 | 266 | 3.07e-75 | 226 |
| MsG0380015366.01.T01 | MTR_4g064887 | 61.963 | 163 | 62 | 0 | 6 | 168 | 100 | 262 | 7.83e-73 | 220 |
| MsG0380015366.01.T01 | MTR_7g063320 | 56.098 | 164 | 68 | 1 | 6 | 165 | 100 | 263 | 4.70e-61 | 190 |
| MsG0380015366.01.T01 | MTR_7g063270 | 54.268 | 164 | 72 | 1 | 6 | 166 | 101 | 264 | 2.21e-56 | 178 |
| MsG0380015366.01.T01 | MTR_7g063360 | 55.422 | 166 | 70 | 1 | 6 | 167 | 101 | 266 | 6.24e-56 | 177 |
| MsG0380015366.01.T01 | MTR_7g063330 | 56.098 | 164 | 69 | 1 | 6 | 166 | 100 | 263 | 1.00e-55 | 177 |
| MsG0380015366.01.T01 | MTR_7g063390 | 54.819 | 166 | 71 | 1 | 6 | 167 | 101 | 266 | 1.02e-55 | 177 |
| MsG0380015366.01.T01 | MTR_7g063260 | 52.121 | 165 | 75 | 1 | 6 | 166 | 101 | 265 | 3.38e-53 | 170 |
| MsG0380015366.01.T01 | MTR_4g064887 | 57.273 | 110 | 47 | 0 | 6 | 115 | 100 | 209 | 3.47e-41 | 138 |
| MsG0380015366.01.T01 | MTR_4g064883 | 57.273 | 110 | 47 | 0 | 6 | 115 | 99 | 208 | 3.53e-41 | 138 |
| MsG0380015366.01.T01 | MTR_7g063270 | 57.576 | 99 | 39 | 1 | 71 | 166 | 117 | 215 | 1.05e-34 | 121 |
| MsG0380015366.01.T01 | MTR_3g085740 | 32.298 | 161 | 106 | 2 | 6 | 165 | 160 | 318 | 6.66e-21 | 87.8 |
| MsG0380015366.01.T01 | MTR_7g094510 | 35.542 | 166 | 94 | 7 | 6 | 164 | 94 | 253 | 1.71e-20 | 85.5 |
| MsG0380015366.01.T01 | MTR_7g094520 | 33.742 | 163 | 103 | 5 | 6 | 165 | 99 | 259 | 2.70e-20 | 85.1 |
| MsG0380015366.01.T01 | MTR_5g098650 | 78.431 | 51 | 11 | 0 | 127 | 177 | 124 | 174 | 6.17e-20 | 82.4 |
| MsG0380015366.01.T01 | MTR_4g132850 | 34.783 | 161 | 101 | 3 | 6 | 165 | 91 | 248 | 6.28e-18 | 79.0 |
| MsG0380015366.01.T01 | MTR_4g058810 | 31.250 | 176 | 112 | 7 | 2 | 170 | 94 | 267 | 5.48e-17 | 76.6 |
| MsG0380015366.01.T01 | MTR_4g058840 | 31.250 | 176 | 112 | 7 | 2 | 170 | 94 | 267 | 3.73e-16 | 74.3 |
| MsG0380015366.01.T01 | MTR_4g058820 | 31.250 | 176 | 112 | 7 | 2 | 170 | 94 | 267 | 3.73e-16 | 74.3 |
| MsG0380015366.01.T01 | MTR_4g058830 | 31.013 | 158 | 103 | 5 | 18 | 170 | 57 | 213 | 6.91e-16 | 72.8 |
| MsG0380015366.01.T01 | MTR_1g068955 | 32.075 | 159 | 98 | 5 | 16 | 169 | 114 | 267 | 1.31e-15 | 72.8 |
| MsG0380015366.01.T01 | MTR_1579s0020 | 35.227 | 88 | 56 | 1 | 87 | 174 | 1 | 87 | 2.83e-15 | 67.8 |
| MsG0380015366.01.T01 | MTR_7g071680 | 29.070 | 172 | 102 | 3 | 15 | 166 | 123 | 294 | 4.67e-15 | 71.6 |
| MsG0380015366.01.T01 | MTR_7g107670 | 27.647 | 170 | 113 | 3 | 7 | 166 | 115 | 284 | 1.27e-13 | 67.8 |
| MsG0380015366.01.T01 | MTR_3g068075 | 48.529 | 68 | 34 | 1 | 29 | 95 | 1 | 68 | 4.62e-13 | 62.0 |
| MsG0380015366.01.T01 | MTR_7g105580 | 26.506 | 166 | 117 | 3 | 2 | 164 | 72 | 235 | 2.55e-12 | 63.5 |
| MsG0380015366.01.T01 | MTR_4g052350 | 28.758 | 153 | 97 | 5 | 25 | 170 | 117 | 264 | 1.09e-11 | 62.0 |
| MsG0380015366.01.T01 | MTR_3g020670 | 37.864 | 103 | 55 | 3 | 73 | 166 | 168 | 270 | 6.69e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015366.01.T01 | AT5G06060 | 65.294 | 170 | 59 | 0 | 6 | 175 | 94 | 263 | 2.88e-82 | 244 |
| MsG0380015366.01.T01 | AT2G29340 | 62.573 | 171 | 62 | 1 | 6 | 174 | 92 | 262 | 2.05e-74 | 224 |
| MsG0380015366.01.T01 | AT2G29290 | 63.314 | 169 | 60 | 1 | 6 | 172 | 75 | 243 | 8.35e-74 | 222 |
| MsG0380015366.01.T01 | AT2G29340 | 63.314 | 169 | 60 | 1 | 6 | 172 | 92 | 260 | 8.91e-74 | 224 |
| MsG0380015366.01.T01 | AT2G29290 | 63.314 | 169 | 60 | 1 | 6 | 172 | 92 | 260 | 1.64e-73 | 222 |
| MsG0380015366.01.T01 | AT1G07440 | 63.314 | 169 | 59 | 2 | 6 | 172 | 97 | 264 | 1.40e-72 | 219 |
| MsG0380015366.01.T01 | AT2G29260 | 59.880 | 167 | 67 | 0 | 6 | 172 | 153 | 319 | 3.10e-71 | 218 |
| MsG0380015366.01.T01 | AT2G29330 | 62.722 | 169 | 61 | 1 | 6 | 172 | 92 | 260 | 1.07e-70 | 214 |
| MsG0380015366.01.T01 | AT2G30670 | 62.424 | 165 | 62 | 0 | 6 | 170 | 92 | 256 | 1.40e-70 | 214 |
| MsG0380015366.01.T01 | AT2G29320 | 62.353 | 170 | 61 | 2 | 6 | 172 | 80 | 249 | 1.74e-70 | 214 |
| MsG0380015366.01.T01 | AT2G29320 | 62.353 | 170 | 61 | 2 | 6 | 172 | 98 | 267 | 2.08e-70 | 214 |
| MsG0380015366.01.T01 | AT2G29360 | 62.424 | 165 | 62 | 0 | 6 | 170 | 101 | 265 | 2.99e-70 | 214 |
| MsG0380015366.01.T01 | AT2G29350 | 61.212 | 165 | 63 | 1 | 6 | 170 | 62 | 225 | 1.62e-69 | 211 |
| MsG0380015366.01.T01 | AT2G29350 | 61.212 | 165 | 63 | 1 | 6 | 170 | 100 | 263 | 5.22e-69 | 211 |
| MsG0380015366.01.T01 | AT1G07450 | 60.606 | 165 | 64 | 1 | 6 | 170 | 93 | 256 | 1.33e-68 | 209 |
| MsG0380015366.01.T01 | AT2G29310 | 60.000 | 165 | 66 | 0 | 6 | 170 | 92 | 256 | 5.22e-68 | 208 |
| MsG0380015366.01.T01 | AT2G29310 | 60.000 | 165 | 66 | 0 | 6 | 170 | 90 | 254 | 1.10e-67 | 207 |
| MsG0380015366.01.T01 | AT2G29150 | 58.788 | 165 | 67 | 1 | 6 | 170 | 101 | 264 | 1.38e-66 | 204 |
| MsG0380015366.01.T01 | AT2G29300 | 58.235 | 170 | 68 | 2 | 6 | 172 | 92 | 261 | 4.89e-66 | 203 |
| MsG0380015366.01.T01 | AT2G29370 | 59.394 | 165 | 67 | 0 | 6 | 170 | 101 | 265 | 5.69e-66 | 203 |
| MsG0380015366.01.T01 | AT2G29300 | 58.025 | 162 | 67 | 1 | 6 | 166 | 92 | 253 | 4.74e-63 | 196 |
| MsG0380015366.01.T01 | AT2G29340 | 58.182 | 110 | 46 | 0 | 6 | 115 | 92 | 201 | 1.49e-41 | 139 |
| MsG0380015366.01.T01 | AT2G29340 | 58.182 | 110 | 46 | 0 | 6 | 115 | 92 | 201 | 1.49e-41 | 139 |
| MsG0380015366.01.T01 | AT2G29350 | 62.857 | 105 | 39 | 0 | 6 | 110 | 100 | 204 | 8.59e-41 | 137 |
| MsG0380015366.01.T01 | AT2G29310 | 57.273 | 110 | 47 | 0 | 6 | 115 | 92 | 201 | 8.56e-39 | 131 |
| MsG0380015366.01.T01 | AT2G29320 | 60.577 | 104 | 40 | 1 | 6 | 108 | 98 | 201 | 9.94e-39 | 131 |
| MsG0380015366.01.T01 | AT2G29310 | 57.273 | 110 | 47 | 0 | 6 | 115 | 90 | 199 | 1.52e-38 | 130 |
| MsG0380015366.01.T01 | AT1G07440 | 60.526 | 76 | 30 | 0 | 6 | 81 | 97 | 172 | 1.31e-24 | 94.7 |
| MsG0380015366.01.T01 | AT1G24360 | 31.288 | 163 | 109 | 2 | 6 | 167 | 159 | 319 | 4.62e-19 | 82.8 |
| MsG0380015366.01.T01 | AT5G18210 | 33.129 | 163 | 104 | 5 | 6 | 165 | 99 | 259 | 2.17e-18 | 80.1 |
| MsG0380015366.01.T01 | AT4G13180 | 32.667 | 150 | 98 | 3 | 19 | 167 | 116 | 263 | 1.67e-17 | 77.8 |
| MsG0380015366.01.T01 | AT3G03980 | 32.927 | 164 | 101 | 6 | 6 | 164 | 109 | 268 | 2.84e-17 | 77.4 |
| MsG0380015366.01.T01 | AT3G04000 | 31.973 | 147 | 97 | 3 | 19 | 164 | 125 | 269 | 5.00e-15 | 71.2 |
| MsG0380015366.01.T01 | AT4G05530 | 32.075 | 159 | 104 | 3 | 8 | 165 | 95 | 250 | 5.31e-15 | 70.9 |
| MsG0380015366.01.T01 | AT5G18210 | 33.103 | 145 | 92 | 5 | 6 | 147 | 99 | 241 | 7.52e-14 | 68.2 |
| MsG0380015366.01.T01 | AT3G05260 | 33.333 | 165 | 101 | 6 | 8 | 168 | 129 | 288 | 9.55e-13 | 65.1 |
| MsG0380015366.01.T01 | AT2G47120 | 29.560 | 159 | 106 | 5 | 18 | 173 | 101 | 256 | 1.93e-12 | 63.9 |
| MsG0380015366.01.T01 | AT2G47120 | 29.560 | 159 | 106 | 5 | 18 | 173 | 102 | 257 | 2.09e-12 | 63.9 |
| MsG0380015366.01.T01 | AT3G51680 | 27.273 | 165 | 107 | 3 | 15 | 166 | 131 | 295 | 4.81e-12 | 63.2 |
| MsG0380015366.01.T01 | AT3G46170 | 25.434 | 173 | 123 | 5 | 2 | 169 | 110 | 281 | 6.34e-12 | 62.8 |
| MsG0380015366.01.T01 | AT3G26760 | 29.012 | 162 | 104 | 3 | 16 | 166 | 129 | 290 | 1.51e-11 | 62.0 |
Find 39 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGTATATTCAGAAATTA+TGG | 0.192484 | 3:-69093760 | MsG0380015366.01.T01:CDS |
| GTATTCATTTCCTCTATTGC+TGG | 0.292460 | 3:-69093660 | MsG0380015366.01.T01:CDS |
| ATATTATGTTATTCTCATAC+TGG | 0.336425 | 3:+69092406 | None:intergenic |
| GCTTCGCAACAAGCAATATA+TGG | 0.337614 | 3:-69092579 | MsG0380015366.01.T01:CDS |
| GGACAAGTTATTTGTGTTGA+TGG | 0.347587 | 3:-69092455 | MsG0380015366.01.T01:CDS |
| CATCCTCTTCTAAAGGCATC+TGG | 0.416244 | 3:-69093696 | MsG0380015366.01.T01:CDS |
| CTTCTAAAGGCATCTGGAAT+GGG | 0.459395 | 3:-69093690 | MsG0380015366.01.T01:CDS |
| ATTGCTGGTGTGGTGAGCTT+AGG | 0.459739 | 3:-69093645 | MsG0380015366.01.T01:CDS |
| ATGTTGTCTCGAACTCCTCT+TGG | 0.462026 | 3:-69092551 | MsG0380015366.01.T01:CDS |
| GATGGAGGATTAACTGTGAA+TGG | 0.465243 | 3:-69092437 | MsG0380015366.01.T01:CDS |
| TCATGAAGTTTCGTCGTTGG+TGG | 0.470167 | 3:-69092513 | MsG0380015366.01.T01:CDS |
| GCTCACCACACCAGCAATAG+AGG | 0.474512 | 3:+69093650 | None:intergenic |
| CATTTCCTCTATTGCTGGTG+TGG | 0.475178 | 3:-69093655 | MsG0380015366.01.T01:CDS |
| ATGTTATTCTCATACTGGGC+TGG | 0.485858 | 3:+69092411 | None:intergenic |
| GAAGTATATTCAGAAATTAT+GGG | 0.494925 | 3:-69093759 | MsG0380015366.01.T01:CDS |
| TCTTCTAAAGGCATCTGGAA+TGG | 0.496159 | 3:-69093691 | MsG0380015366.01.T01:CDS |
| ATCAACACAAATAACTTGTC+CGG | 0.496880 | 3:+69092457 | None:intergenic |
| ATGTTCAACAAGTGGTGTAT+TGG | 0.502929 | 3:+69093403 | None:intergenic |
| ATCTCATGAAGTTTCGTCGT+TGG | 0.509818 | 3:-69092516 | MsG0380015366.01.T01:CDS |
| ATAATGTTGGAGCAAACTAT+AGG | 0.512853 | 3:-69093806 | MsG0380015366.01.T01:CDS |
| AGTGGTGTATTGGTGGTAGC+AGG | 0.515667 | 3:+69093413 | None:intergenic |
| TCATCACAGGTGAATAATGT+TGG | 0.517660 | 3:-69093819 | MsG0380015366.01.T01:CDS |
| GGTGTGGTGAGCTTAGGTAC+TGG | 0.529304 | 3:-69093639 | MsG0380015366.01.T01:CDS |
| AATGGGCAAAAGATGGCATA+AGG | 0.531839 | 3:-69093451 | MsG0380015366.01.T01:CDS |
| ACTTACACATCCTCTTCTAA+AGG | 0.534266 | 3:-69093703 | MsG0380015366.01.T01:CDS |
| GCTTGTGAATGGGCAAAAGA+TGG | 0.538164 | 3:-69093458 | MsG0380015366.01.T01:CDS |
| ATTCCAGATGCCTTTAGAAG+AGG | 0.541302 | 3:+69093693 | None:intergenic |
| TCAGCAGTGTACTCAATGGT+TGG | 0.544375 | 3:+69093780 | None:intergenic |
| CAAGTTATTTGTGTTGATGG+AGG | 0.549415 | 3:-69092452 | MsG0380015366.01.T01:CDS |
| TCAGTCTATGCAGCAAGTAA+AGG | 0.554898 | 3:-69093615 | MsG0380015366.01.T01:intron |
| AACATTACATGTTCAACAAG+TGG | 0.561131 | 3:+69093395 | None:intergenic |
| TACTTCAGCAGTGTACTCAA+TGG | 0.562176 | 3:+69093776 | None:intergenic |
| TATTATGTTATTCTCATACT+GGG | 0.566252 | 3:+69092407 | None:intergenic |
| TGCTTGATTGATCTCATCAC+AGG | 0.571996 | 3:-69093832 | None:intergenic |
| TTCAACAAGTGGTGTATTGG+TGG | 0.587074 | 3:+69093406 | None:intergenic |
| CCAGCTGCGTCTTACATCAC+CGG | 0.589405 | 3:-69092476 | MsG0380015366.01.T01:CDS |
| CCGGTGATGTAAGACGCAGC+TGG | 0.590374 | 3:+69092476 | None:intergenic |
| AAGACGCAGCTGGCAGACAA+AGG | 0.618321 | 3:+69092486 | None:intergenic |
| GATTCTGCGATGCGTCCAAG+AGG | 0.660666 | 3:+69092536 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATTGTATCATTATT+AGG | + | Chr3:69093558-69093577 | None:intergenic | 10.0% |
| !! | AATTTATGTTAGAGAAAAAT+AGG | - | Chr3:69092946-69092965 | MsG0380015366.01.T01:intron | 15.0% |
| !! | GAAGTATATTCAGAAATTAT+GGG | - | Chr3:69092475-69092494 | MsG0380015366.01.T01:CDS | 20.0% |
| !! | TGAAGTATATTCAGAAATTA+TGG | - | Chr3:69092474-69092493 | MsG0380015366.01.T01:CDS | 20.0% |
| !! | TTTACGATGAAATTATAAAC+AGG | - | Chr3:69093126-69093145 | MsG0380015366.01.T01:intron | 20.0% |
| !! | TTTGAAGAAATAAACTTTGT+TGG | + | Chr3:69093066-69093085 | None:intergenic | 20.0% |
| ! | AAATAATAATAGAGGATTGG+AGG | + | Chr3:69093342-69093361 | None:intergenic | 25.0% |
| ! | AGCAAATAACTCCAAAATAA+AGG | + | Chr3:69092872-69092891 | None:intergenic | 25.0% |
| ! | AGTTGAACAAGTAATTAGTA+TGG | + | Chr3:69092663-69092682 | None:intergenic | 25.0% |
| ! | CACAAATAATAATAGAGGAT+TGG | + | Chr3:69093345-69093364 | None:intergenic | 25.0% |
| ! | GTTCATCTGCATTATAAATA+GGG | + | Chr3:69093461-69093480 | None:intergenic | 25.0% |
| ! | TCTCTAACATAAATTTCAGT+AGG | + | Chr3:69092941-69092960 | None:intergenic | 25.0% |
| ! | TGCATTATAAATAGGGAAAA+AGG | + | Chr3:69093454-69093473 | None:intergenic | 25.0% |
| ! | TGTTCATCTGCATTATAAAT+AGG | + | Chr3:69093462-69093481 | None:intergenic | 25.0% |
| !!! | AAAAAATTTGGCTTGTGAAT+GGG | - | Chr3:69092766-69092785 | MsG0380015366.01.T01:intron | 25.0% |
| !!! | TGTTCTCTTTTCCTTTATTT+TGG | - | Chr3:69092858-69092877 | MsG0380015366.01.T01:intron | 25.0% |
| AACATTACATGTTCAACAAG+TGG | + | Chr3:69092842-69092861 | None:intergenic | 30.0% | |
| AACTTGACTTAAAGTTGCTA+TGG | - | Chr3:69093481-69093500 | MsG0380015366.01.T01:CDS | 30.0% | |
| ATAATGTTGGAGCAAACTAT+AGG | - | Chr3:69092428-69092447 | MsG0380015366.01.T01:CDS | 30.0% | |
| CACTCAGCTTACAAAAAATT+TGG | - | Chr3:69092754-69092773 | MsG0380015366.01.T01:intron | 30.0% | |
| CACTGCACAAATAATAATAG+AGG | + | Chr3:69093350-69093369 | None:intergenic | 30.0% | |
| CTCTAGATTGAATCTAAACA+TGG | - | Chr3:69092999-69093018 | MsG0380015366.01.T01:intron | 30.0% | |
| GACACATTGTATACAAAATC+AGG | + | Chr3:69093394-69093413 | None:intergenic | 30.0% | |
| GCAAGATATTTATGAAACAG+AGG | + | Chr3:69093103-69093122 | None:intergenic | 30.0% | |
| TAGGTCAAAGATAACATAGT+TGG | - | Chr3:69092965-69092984 | MsG0380015366.01.T01:intron | 30.0% | |
| ! | AAACAGGCAATTTATGCTTT+TGG | - | Chr3:69093142-69093161 | MsG0380015366.01.T01:intron | 30.0% |
| ! | AGATTGTGTTCAACATTTTG+AGG | - | Chr3:69093276-69093295 | MsG0380015366.01.T01:intron | 30.0% |
| ! | ATCAACACAAATAACTTGTC+CGG | + | Chr3:69093780-69093799 | None:intergenic | 30.0% |
| ! | GACAAAAAAGTGTAGCTATT+TGG | + | Chr3:69093590-69093609 | None:intergenic | 30.0% |
| ! | GAGTTATTTGCTTTCCTTTT+GGG | - | Chr3:69092880-69092899 | MsG0380015366.01.T01:intron | 30.0% |
| ! | GATTTTGTATACAATGTGTC+TGG | - | Chr3:69093394-69093413 | MsG0380015366.01.T01:intron | 30.0% |
| ! | TTCAACTTGCTTGTAGTAAA+AGG | - | Chr3:69092676-69092695 | MsG0380015366.01.T01:intron | 30.0% |
| !! | CAAAAAATTTGGCTTGTGAA+TGG | - | Chr3:69092765-69092784 | MsG0380015366.01.T01:intron | 30.0% |
| !!! | ATTTTTTGTAAGCTGAGTGA+TGG | + | Chr3:69092753-69092772 | None:intergenic | 30.0% |
| AATAATAGAGGATTGGAGGA+TGG | + | Chr3:69093338-69093357 | None:intergenic | 35.0% | |
| ACTTACACATCCTCTTCTAA+AGG | - | Chr3:69092531-69092550 | MsG0380015366.01.T01:CDS | 35.0% | |
| ATGTTCAACAAGTGGTGTAT+TGG | + | Chr3:69092834-69092853 | None:intergenic | 35.0% | |
| CTCAAACAGATGTACTAAGA+GGG | - | Chr3:69093306-69093325 | MsG0380015366.01.T01:intron | 35.0% | |
| GGACAAGTTATTTGTGTTGA+TGG | - | Chr3:69093779-69093798 | MsG0380015366.01.T01:CDS | 35.0% | |
| GTATTCATTTCCTCTATTGC+TGG | - | Chr3:69092574-69092593 | MsG0380015366.01.T01:CDS | 35.0% | |
| TAGGAATACAAAAGTTCAGC+AGG | + | Chr3:69093539-69093558 | None:intergenic | 35.0% | |
| TCATCACAGGTGAATAATGT+TGG | - | Chr3:69092415-69092434 | MsG0380015366.01.T01:CDS | 35.0% | |
| TCTCAAACAGATGTACTAAG+AGG | - | Chr3:69093305-69093324 | MsG0380015366.01.T01:intron | 35.0% | |
| ! | CAAGTTATTTGTGTTGATGG+AGG | - | Chr3:69093782-69093801 | MsG0380015366.01.T01:CDS | 35.0% |
| ! | GGAGTTATTTGCTTTCCTTT+TGG | - | Chr3:69092879-69092898 | MsG0380015366.01.T01:intron | 35.0% |
| AATGGGCAAAAGATGGCATA+AGG | - | Chr3:69092783-69092802 | MsG0380015366.01.T01:intron | 40.0% | |
| ATCTCATGAAGTTTCGTCGT+TGG | - | Chr3:69093718-69093737 | MsG0380015366.01.T01:CDS | 40.0% | |
| ATGGCAGCTGAAAACATCAT+TGG | + | Chr3:69092734-69092753 | None:intergenic | 40.0% | |
| ATGTTATTCTCATACTGGGC+TGG | + | Chr3:69093826-69093845 | None:intergenic | 40.0% | |
| CATTGAATCCTTCACCCAAA+AGG | + | Chr3:69092897-69092916 | None:intergenic | 40.0% | |
| GATGGAGGATTAACTGTGAA+TGG | - | Chr3:69093797-69093816 | MsG0380015366.01.T01:CDS | 40.0% | |
| GCTTCGCAACAAGCAATATA+TGG | - | Chr3:69093655-69093674 | MsG0380015366.01.T01:CDS | 40.0% | |
| TACTTCAGCAGTGTACTCAA+TGG | + | Chr3:69092461-69092480 | None:intergenic | 40.0% | |
| TCAGTCTATGCAGCAAGTAA+AGG | - | Chr3:69092619-69092638 | MsG0380015366.01.T01:intron | 40.0% | |
| TCTATGCAGCAAGTAAAGGT+GGG | - | Chr3:69092623-69092642 | MsG0380015366.01.T01:intron | 40.0% | |
| TGGGTGAAGGATTCAATGAT+AGG | - | Chr3:69092899-69092918 | MsG0380015366.01.T01:intron | 40.0% | |
| TTCAACAAGTGGTGTATTGG+TGG | + | Chr3:69092831-69092850 | None:intergenic | 40.0% | |
| ! | ATTCCAGATGCCTTTAGAAG+AGG | + | Chr3:69092544-69092563 | None:intergenic | 40.0% |
| ! | GGCAATTTATGCTTTTGGTG+TGG | - | Chr3:69093147-69093166 | MsG0380015366.01.T01:intron | 40.0% |
| !! | CTTCTAAAGGCATCTGGAAT+GGG | - | Chr3:69092544-69092563 | MsG0380015366.01.T01:CDS | 40.0% |
| !! | TCTTCTAAAGGCATCTGGAA+TGG | - | Chr3:69092543-69092562 | MsG0380015366.01.T01:CDS | 40.0% |
| !! | TTTGCTTTCCTTTTGGGTGA+AGG | - | Chr3:69092886-69092905 | MsG0380015366.01.T01:intron | 40.0% |
| ATGTTGTCTCGAACTCCTCT+TGG | - | Chr3:69093683-69093702 | MsG0380015366.01.T01:CDS | 45.0% | |
| CATTTCCTCTATTGCTGGTG+TGG | - | Chr3:69092579-69092598 | MsG0380015366.01.T01:CDS | 45.0% | |
| GCTTGTGAATGGGCAAAAGA+TGG | - | Chr3:69092776-69092795 | MsG0380015366.01.T01:intron | 45.0% | |
| GTCTATGCAGCAAGTAAAGG+TGG | - | Chr3:69092622-69092641 | MsG0380015366.01.T01:intron | 45.0% | |
| GTCTTCATGTCTCAGCTCAT+TGG | - | Chr3:69093185-69093204 | MsG0380015366.01.T01:intron | 45.0% | |
| TCAGCAGTGTACTCAATGGT+TGG | + | Chr3:69092457-69092476 | None:intergenic | 45.0% | |
| TCATGAAGTTTCGTCGTTGG+TGG | - | Chr3:69093721-69093740 | MsG0380015366.01.T01:CDS | 45.0% | |
| !! | CATCCTCTTCTAAAGGCATC+TGG | - | Chr3:69092538-69092557 | MsG0380015366.01.T01:CDS | 45.0% |
| ATTGCTGGTGTGGTGAGCTT+AGG | - | Chr3:69092589-69092608 | MsG0380015366.01.T01:intron | 50.0% | |
| ! | AGTGGTGTATTGGTGGTAGC+AGG | + | Chr3:69092824-69092843 | None:intergenic | 50.0% |
| AAGACGCAGCTGGCAGACAA+AGG | + | Chr3:69093751-69093770 | None:intergenic | 55.0% | |
| CCAGCTGCGTCTTACATCAC+CGG | - | Chr3:69093758-69093777 | MsG0380015366.01.T01:CDS | 55.0% | |
| GATTCTGCGATGCGTCCAAG+AGG | + | Chr3:69093701-69093720 | None:intergenic | 55.0% | |
| GCTCACCACACCAGCAATAG+AGG | + | Chr3:69092587-69092606 | None:intergenic | 55.0% | |
| GGTGTGGTGAGCTTAGGTAC+TGG | - | Chr3:69092595-69092614 | MsG0380015366.01.T01:intron | 55.0% | |
| CCGGTGATGTAAGACGCAGC+TGG | + | Chr3:69093761-69093780 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 69092409 | 69093847 | 69092409 | ID=MsG0380015366.01;Name=MsG0380015366.01 |
| Chr3 | mRNA | 69092409 | 69093847 | 69092409 | ID=MsG0380015366.01.T01;Parent=MsG0380015366.01;Name=MsG0380015366.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|3|0|177 |
| Chr3 | exon | 69093616 | 69093847 | 69093616 | ID=MsG0380015366.01.T01:exon:23432;Parent=MsG0380015366.01.T01 |
| Chr3 | exon | 69093403 | 69093509 | 69093403 | ID=MsG0380015366.01.T01:exon:23431;Parent=MsG0380015366.01.T01 |
| Chr3 | exon | 69092409 | 69092603 | 69092409 | ID=MsG0380015366.01.T01:exon:23430;Parent=MsG0380015366.01.T01 |
| Chr3 | CDS | 69093616 | 69093847 | 69093616 | ID=MsG0380015366.01.T01:cds;Parent=MsG0380015366.01.T01 |
| Chr3 | CDS | 69093403 | 69093509 | 69093403 | ID=MsG0380015366.01.T01:cds;Parent=MsG0380015366.01.T01 |
| Chr3 | CDS | 69092409 | 69092603 | 69092409 | ID=MsG0380015366.01.T01:cds;Parent=MsG0380015366.01.T01 |
| Gene Sequence |
| Protein sequence |
