AlfalfaGEDB | MsG0680035498.01

M. sativa cultivar ZhongmuNo.1 / MsG0680035498.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035498.01.T01	XP_013451394.1	96.403	139	5	0	1	139	534	672	6.18E-86	274

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048856.01	MsG0680035498.01	0.830295	3.182898e-55	3.339509e-52
MsG0180000139.01	MsG0680035498.01	0.829562	4.803533e-55	4.933837e-52
MsG0180000145.01	MsG0680035498.01	0.815028	1.140265e-51	7.773994e-49
MsG0180000178.01	MsG0680035498.01	0.804366	2.235673e-49	1.150607e-46
MsG0180000470.01	MsG0680035498.01	0.823299	1.493010e-53	1.280456e-50
MsG0180000650.01	MsG0680035498.01	0.808352	3.230280e-50	1.842936e-47
MsG0180000914.01	MsG0680035498.01	0.806897	6.580985e-50	3.614264e-47
MsG0180001892.01	MsG0680035498.01	0.851110	1.098333e-60	2.199460e-57
MsG0180003455.01	MsG0680035498.01	0.813992	1.932554e-51	1.281121e-48
MsG0180003651.01	MsG0680035498.01	0.820069	8.331479e-53	6.525926e-50
MsG0180003786.01	MsG0680035498.01	0.801605	8.320985e-49	3.990418e-46
MsG0180003920.01	MsG0680035498.01	0.813623	2.330501e-51	1.529620e-48
MsG0180003951.01	MsG0680035498.01	0.822598	2.174144e-53	1.828306e-50
MsG0180004743.01	MsG0680035498.01	0.834089	3.667248e-56	4.306512e-53
MsG0180004765.01	MsG0680035498.01	0.815359	9.625283e-52	6.621835e-49
MsG0180004975.01	MsG0680035498.01	0.812148	4.905820e-51	3.094935e-48
MsG0180005153.01	MsG0680035498.01	0.840533	8.210892e-58	1.173012e-54
MsG0180005524.01	MsG0680035498.01	0.818554	1.844974e-52	1.385468e-49
MsG0180005575.01	MsG0680035498.01	0.809659	1.696175e-50	1.001786e-47
MsG0180005763.01	MsG0680035498.01	0.805999	1.017572e-49	5.461939e-47
MsG0180006017.01	MsG0680035498.01	0.813869	2.057367e-51	1.359340e-48
MsG0280006324.01	MsG0680035498.01	0.808182	3.511418e-50	1.994378e-47
MsG0280010778.01	MsG0680035498.01	0.812958	3.262431e-51	2.102806e-48
MsG0280011014.01	MsG0680035498.01	0.814449	1.532340e-51	1.028481e-48
MsG0280011258.01	MsG0680035498.01	0.802873	4.562373e-49	2.259808e-46
MsG0280011304.01	MsG0680035498.01	0.830958	2.190471e-55	2.343372e-52
MsG0280011305.01	MsG0680035498.01	0.813524	2.449971e-51	1.603747e-48
MsG0280011319.01	MsG0680035498.01	0.818435	1.963492e-52	1.469755e-49
MsG0280011339.01	MsG0680035498.01	0.827490	1.520307e-54	1.469939e-51
MsG0280011341.01	MsG0680035498.01	0.807305	5.392679e-50	2.993390e-47
MsG0380012067.01	MsG0680035498.01	0.843490	1.357045e-58	2.126676e-55
MsG0380012122.01	MsG0680035498.01	0.820165	7.923833e-53	6.222719e-50
MsG0380013183.01	MsG0680035498.01	0.821634	3.636904e-53	2.975103e-50
MsG0380013475.01	MsG0680035498.01	0.824927	6.189715e-54	5.560701e-51
MsG0380014097.01	MsG0680035498.01	0.802480	5.498259e-49	2.696191e-46
MsG0380014468.01	MsG0680035498.01	0.813821	2.108568e-51	1.391337e-48
MsG0680030856.01	MsG0680035498.01	0.808073	3.704067e-50	2.097633e-47
MsG0680030880.01	MsG0680035498.01	0.812839	3.464503e-51	2.225999e-48
MsG0680030881.01	MsG0680035498.01	0.809243	2.082954e-50	1.216678e-47
MsG0680030882.01	MsG0680035498.01	0.839321	1.699161e-57	2.338111e-54
MsG0680031431.01	MsG0680035498.01	0.858001	1.111375e-62	2.795388e-59
MsG0680034230.01	MsG0680035498.01	0.813269	2.787490e-51	1.811937e-48
MsG0680034739.01	MsG0680035498.01	0.841790	3.836740e-58	5.699554e-55
MsG0680035498.01	MsG0680035580.01	0.814346	1.614355e-51	1.080545e-48
MsG0680035498.01	MsG0780036297.01	0.808521	2.973990e-50	1.704147e-47
MsG0680035498.01	MsG0780036477.01	0.805094	1.575577e-49	8.262296e-47
MsG0680035498.01	MsG0780036486.01	0.808947	2.411496e-50	1.397327e-47
MsG0680035498.01	MsG0780036757.01	0.829566	4.793001e-55	4.923580e-52
MsG0680035498.01	MsG0780036766.01	0.817830	2.690488e-52	1.980563e-49
MsG0680035498.01	MsG0780037054.01	0.838789	2.334644e-57	3.160600e-54
MsG0680035498.01	MsG0780037093.01	0.841751	3.929575e-58	5.830163e-55
MsG0680035498.01	MsG0780037460.01	0.820531	6.531307e-53	5.181101e-50
MsG0680035498.01	MsG0780038377.01	0.808006	3.828256e-50	2.164153e-47
MsG0680035498.01	MsG0780038439.01	0.801386	9.226472e-49	4.400471e-46
MsG0680035498.01	MsG0780038598.01	-0.816024	6.844046e-52	4.795104e-49
MsG0680035498.01	MsG0780038907.01	0.810137	1.338317e-50	8.003706e-48
MsG0680035498.01	MsG0780038910.01	-0.802041	6.770404e-49	3.283096e-46
MsG0680035498.01	MsG0780039139.01	0.800174	1.631184e-48	7.544296e-46
MsG0680035498.01	MsG0780039243.01	0.801386	9.226018e-49	4.400267e-46
MsG0680035498.01	MsG0780039443.01	0.817169	3.789941e-52	2.739795e-49
MsG0680035498.01	MsG0780040057.01	0.805570	1.252470e-49	6.648586e-47
MsG0680035498.01	MsG0780040074.01	0.809429	1.900338e-50	1.115505e-47
MsG0680035498.01	MsG0780040529.01	0.801449	8.956708e-49	4.278634e-46
MsG0680035498.01	MsG0780040926.01	0.817279	3.581680e-52	2.596857e-49
MsG0680035498.01	MsG0780041016.01	0.824999	5.953896e-54	5.359769e-51
MsG0680035498.01	MsG0780041440.01	0.810950	8.931993e-51	5.458779e-48
MsG0680035498.01	MsG0880041986.01	0.806962	6.376899e-50	3.508083e-47
MsG0680035498.01	MsG0880043479.01	0.835417	1.698407e-56	2.075653e-53
MsG0680035498.01	MsG0880043480.01	0.816971	4.198946e-52	3.019288e-49
MsG0680035498.01	MsG0880043937.01	0.831867	1.308385e-55	1.438172e-52
MsG0680035498.01	MsG0880043941.01	0.806675	7.330990e-50	4.003092e-47
MsG0680035498.01	MsG0880044067.01	0.810420	1.162827e-50	7.005784e-48
MsG0680035498.01	MsG0880044323.01	0.831220	1.888574e-55	2.036143e-52
MsG0680035498.01	MsG0880044782.01	0.826897	2.107638e-54	2.002886e-51
MsG0680035498.01	MsG0880045362.01	0.808948	2.409842e-50	1.396420e-47
MsG0680035498.01	MsG0880045765.01	0.808271	3.361004e-50	1.913461e-47
MsG0680035498.01	MsG0880046012.01	0.800788	1.222727e-48	5.743945e-46
MsG0680035498.01	MsG0880046457.01	0.809026	2.319226e-50	1.346733e-47
MsG0680035498.01	MsG0880046645.01	0.800291	1.543761e-48	7.161637e-46
MsG0680035498.01	MsG0880047473.01	0.802751	4.836070e-49	2.387978e-46
MsG0480018653.01	MsG0680035498.01	0.808784	2.612894e-50	1.507469e-47
MsG0480019206.01	MsG0680035498.01	0.840056	1.093903e-57	1.540091e-54
MsG0480020780.01	MsG0680035498.01	0.800031	1.744376e-48	8.038622e-46
MsG0480020879.01	MsG0680035498.01	0.802686	4.987084e-49	2.458391e-46
MsG0480021056.01	MsG0680035498.01	0.825089	5.667937e-54	5.115547e-51
MsG0480021195.01	MsG0680035498.01	0.810876	9.266962e-51	5.652073e-48
MsG0480022686.01	MsG0680035498.01	-0.804143	2.487974e-49	1.273148e-46
MsG0480022788.01	MsG0680035498.01	0.806372	8.492350e-50	4.601648e-47
MsG0480022825.01	MsG0680035498.01	0.811334	7.375835e-51	4.552867e-48
MsG0480023163.01	MsG0680035498.01	0.820888	5.407402e-53	4.332531e-50
MsG0480023172.01	MsG0680035498.01	0.813626	2.327476e-51	1.527729e-48
MsG0480023221.01	MsG0680035498.01	0.800352	1.500355e-48	6.971037e-46
MsG0480023463.01	MsG0680035498.01	0.824014	1.015133e-53	8.883531e-51
MsG0480023488.01	MsG0680035498.01	0.803558	3.292509e-49	1.659778e-46
MsG0480023601.01	MsG0680035498.01	0.819589	1.072951e-52	8.291699e-50
MsG0480023814.01	MsG0680035498.01	0.805744	1.151256e-49	6.139322e-47
MsG0480023936.01	MsG0680035498.01	-0.808342	3.246018e-50	1.851443e-47
MsG0580024161.01	MsG0680035498.01	0.812104	5.013540e-51	3.159095e-48
MsG0580024197.01	MsG0680035498.01	0.801316	9.537840e-49	4.540969e-46
MsG0580024790.01	MsG0680035498.01	-0.819752	9.845034e-53	7.642899e-50
MsG0580025135.01	MsG0680035498.01	0.820303	7.367234e-53	5.807455e-50
MsG0580025332.01	MsG0680035498.01	0.813886	2.039792e-51	1.348353e-48
MsG0580025407.01	MsG0680035498.01	-0.828905	6.930805e-55	6.982670e-52
MsG0580025587.01	MsG0680035498.01	0.812774	3.578917e-51	2.295671e-48
MsG0580025814.01	MsG0680035498.01	0.813422	2.580844e-51	1.684682e-48
MsG0580025816.01	MsG0680035498.01	0.806366	8.520134e-50	4.615856e-47
MsG0580025987.01	MsG0680035498.01	0.800327	1.518184e-48	7.049466e-46
MsG0380015332.01	MsG0680035498.01	0.825652	4.170300e-54	3.824513e-51
MsG0380015366.01	MsG0680035498.01	0.820296	7.393622e-53	5.827162e-50
MsG0380015555.01	MsG0680035498.01	0.807314	5.369004e-50	2.980932e-47
MsG0380015677.01	MsG0680035498.01	0.807975	3.887848e-50	2.195996e-47
MsG0380015875.01	MsG0680035498.01	0.834089	3.666580e-56	4.305780e-53
MsG0380015944.01	MsG0680035498.01	0.800881	1.170596e-48	5.512438e-46
MsG0380016126.01	MsG0680035498.01	0.821386	4.150067e-53	3.371437e-50
MsG0380016247.01	MsG0680035498.01	0.832885	7.321598e-56	8.293343e-53
MsG0380016671.01	MsG0680035498.01	0.802011	6.869707e-49	3.328619e-46
MsG0380017258.01	MsG0680035498.01	0.828305	9.680612e-55	9.584398e-52
MsG0380017461.01	MsG0680035498.01	0.811099	8.294131e-51	5.088391e-48
MsG0480018183.01	MsG0680035498.01	0.809460	1.871714e-50	1.099567e-47
MsG0480018278.01	MsG0680035498.01	0.833333	5.663302e-56	6.502187e-53
MsG0580027922.01	MsG0680035498.01	0.813930	1.994773e-51	1.320112e-48
MsG0580027925.01	MsG0680035498.01	0.818283	2.125161e-52	1.583914e-49
MsG0580027999.01	MsG0680035498.01	0.817147	3.833524e-52	2.769635e-49
MsG0580029127.01	MsG0680035498.01	0.802096	6.598338e-49	3.204135e-46
MsG0580029236.01	MsG0680035498.01	0.819545	1.098013e-52	8.474803e-50
MsG0680030674.01	MsG0680035498.01	0.800611	1.328638e-48	6.213709e-46
MsG0280006766.01	MsG0680035498.01	0.801796	7.604852e-49	3.664815e-46
MsG0280007164.01	MsG0680035498.01	0.802175	6.354836e-49	3.092107e-46
MsG0280007224.01	MsG0680035498.01	-0.802767	4.799099e-49	2.370715e-46
MsG0280007452.01	MsG0680035498.01	0.808581	2.887017e-50	1.656849e-47
MsG0280007501.01	MsG0680035498.01	0.808187	3.502685e-50	1.989687e-47
MsG0280007506.01	MsG0680035498.01	0.812379	4.368036e-51	2.772855e-48
MsG0280007547.01	MsG0680035498.01	0.810795	9.649374e-51	5.872309e-48
MsG0280007955.01	MsG0680035498.01	0.832282	1.033154e-55	1.149323e-52
MsG0280008182.01	MsG0680035498.01	0.810939	8.983333e-51	5.488369e-48
MsG0280008377.01	MsG0680035498.01	0.812893	3.370526e-51	2.168857e-48
MsG0280008378.01	MsG0680035498.01	0.807908	4.016401e-50	2.264495e-47
MsG0280008390.01	MsG0680035498.01	0.803859	2.850373e-49	1.448011e-46
MsG0280008391.01	MsG0680035498.01	0.814142	1.791102e-51	1.192200e-48
MsG0280008392.01	MsG0680035498.01	0.802189	6.311982e-49	3.072280e-46
MsG0280009794.01	MsG0680035498.01	0.830553	2.752855e-55	2.909940e-52
MsG0280010349.01	MsG0680035498.01	0.802044	6.760721e-49	3.278623e-46
MsG0280010489.01	MsG0680035498.01	0.835244	1.878908e-56	2.284481e-53

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035498.01.T01	MTR_6g022830	96.403	139	5	0	1	139	534	672	7.48e-90	274
MsG0680035498.01.T01	MTR_6g023070	95.683	139	6	0	1	139	471	609	1.92e-80	248

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035498.01.T01	AT3G01750	53.488	129	46	5	9	128	535	658	4.06e-19	82.8
MsG0680035498.01.T01	AT3G01750	53.488	129	46	5	9	128	535	658	4.06e-19	82.8

Find 17 sgRNAs with CRISPR-Local

Find 20 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAATTTCTCTTAACGAATTT+CGG	0.284326	6:+106860318	None:intergenic
ACAAAAGAACACTTTCTGTT+AGG	0.359130	6:-106860536	MsG0680035498.01.T01:CDS
GCAAATCTCTTCTTAGCATT+AGG	0.359958	6:+106860498	None:intergenic
AAGGGTCATTACTTCTGTTT+CGG	0.368590	6:-106860279	MsG0680035498.01.T01:CDS
TGCTTATTATCAATTGATCT+AGG	0.375333	6:+106860426	None:intergenic
TACTTCTGTTTCGGTGCACC+TGG	0.379873	6:-106860270	MsG0680035498.01.T01:CDS
ATCAATTGATAATAAGCAAA+AGG	0.410363	6:-106860421	MsG0680035498.01.T01:CDS
TTAAGAGAAATTCTGTTAGC+AGG	0.463517	6:-106860308	MsG0680035498.01.T01:CDS
TTCTGTTAGCAGGAAGTTGA+AGG	0.474185	6:-106860298	MsG0680035498.01.T01:CDS
TAAGCCACAGCAACAAAACT+AGG	0.476632	6:+106860219	None:intergenic
GATACTGACGATATTGTTGC+CGG	0.482463	6:-106860387	MsG0680035498.01.T01:CDS
TTGATTCAAGCAAGATGGTC+CGG	0.490864	6:+106860368	None:intergenic
TCAATTGATAATAAGCAAAA+GGG	0.495816	6:-106860420	MsG0680035498.01.T01:CDS
GGTGTCTCATCATCATCATA+AGG	0.533965	6:+106860339	None:intergenic
AGTTGTTGATTCAAGCAAGA+TGG	0.554714	6:+106860363	None:intergenic
TCTGTTAGCAGGAAGTTGAA+GGG	0.611806	6:-106860297	MsG0680035498.01.T01:CDS
GAAGTCTTCACATTAAGACC+AGG	0.700871	6:+106860252	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATCAATTGATAATAAGCAAA+AGG	-	Chr6:106860412-106860431	MsG0680035498.01.T01:CDS	20.0%
!!!	TCAATTGATAATAAGCAAAA+GGG	-	Chr6:106860413-106860432	MsG0680035498.01.T01:CDS	20.0%
!	GAATTTCTCTTAACGAATTT+CGG	+	Chr6:106860518-106860537	None:intergenic	25.0%
!	TGCTTATTATCAATTGATCT+AGG	+	Chr6:106860410-106860429	None:intergenic	25.0%
	ACAAAAGAACACTTTCTGTT+AGG	-	Chr6:106860297-106860316	MsG0680035498.01.T01:CDS	30.0%
	TTAAGAGAAATTCTGTTAGC+AGG	-	Chr6:106860525-106860544	MsG0680035498.01.T01:CDS	30.0%
!	ACTTAGACAGAGATTTTCTT+CGG	-	Chr6:106860247-106860266	MsG0680035498.01.T01:CDS	30.0%
!!!	GAAAGTGTTCTTTTGTTGTT+TGG	+	Chr6:106860293-106860312	None:intergenic	30.0%
	AAGGGTCATTACTTCTGTTT+CGG	-	Chr6:106860554-106860573	MsG0680035498.01.T01:CDS	35.0%
	GCAAATCTCTTCTTAGCATT+AGG	+	Chr6:106860338-106860357	None:intergenic	35.0%
!!	AGTTGTTGATTCAAGCAAGA+TGG	+	Chr6:106860473-106860492	None:intergenic	35.0%
!!!	TAAACCTAGTTTTGTTGCTG+TGG	-	Chr6:106860610-106860629	MsG0680035498.01.T01:CDS	35.0%
	GAAGTCTTCACATTAAGACC+AGG	+	Chr6:106860584-106860603	None:intergenic	40.0%
	GATACTGACGATATTGTTGC+CGG	-	Chr6:106860446-106860465	MsG0680035498.01.T01:CDS	40.0%
	GGTGTCTCATCATCATCATA+AGG	+	Chr6:106860497-106860516	None:intergenic	40.0%
	TAAGCCACAGCAACAAAACT+AGG	+	Chr6:106860617-106860636	None:intergenic	40.0%
	TCTGTTAGCAGGAAGTTGAA+GGG	-	Chr6:106860536-106860555	MsG0680035498.01.T01:CDS	40.0%
	TTCTGTTAGCAGGAAGTTGA+AGG	-	Chr6:106860535-106860554	MsG0680035498.01.T01:CDS	40.0%
	TTGATTCAAGCAAGATGGTC+CGG	+	Chr6:106860468-106860487	None:intergenic	40.0%
!	TACTTCTGTTTCGGTGCACC+TGG	-	Chr6:106860563-106860582	MsG0680035498.01.T01:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	106860218	106860637	106860218	ID=MsG0680035498.01;Name=MsG0680035498.01
Chr6	mRNA	106860218	106860637	106860218	ID=MsG0680035498.01.T01;Parent=MsG0680035498.01;Name=MsG0680035498.01.T01;_AED=0.44;_eAED=0.44;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|139
Chr6	exon	106860218	106860637	106860218	ID=MsG0680035498.01.T01:exon:18829;Parent=MsG0680035498.01.T01
Chr6	CDS	106860218	106860637	106860218	ID=MsG0680035498.01.T01:cds;Parent=MsG0680035498.01.T01

Gene Sequence

>MsG0680035498.01.T01

ATGAGTACTAATAGTTTTGATGAAATTTCACTTAGACAGAGATTTTCTTCGGCTTCTAAGACGAATTTGATTCCAAACAACAAAAGAACACTTTCTGTTAGGAGCTATCAATCAAGTCCTAATGCTAAGAAGAGATTTGCATCAGCAAGAACAAGATCAAGTTCATTTTCAAAATCATCAATCTCTTCACCTAGATCAATTGATAATAAGCAAAAGGGTGTTTATATAGATACTGACGATATTGTTGCCGGACCATCTTGCTTGAATCAACAACTGCCTTATGATGATGATGAGACACCGAAATTCGTTAAGAGAAATTCTGTTAGCAGGAAGTTGAAGGGTCATTACTTCTGTTTCGGTGCACCTGGTCTTAATGTGAAGACTTCTGTTCATAAACCTAGTTTTGTTGCTGTGGCTTAA

Protein sequence

>MsG0680035498.01.T01

MSTNSFDEISLRQRFSSASKTNLIPNNKRTLSVRSYQSSPNAKKRFASARTRSSSFSKSSISSPRSIDNKQKGVYIDTDDIVAGPSCLNQQLPYDDDETPKFVKRNSVSRKLKGHYFCFGAPGLNVKTSVHKPSFVAVA*