AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015518.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015518.01.T01 MTR_3g071650 76.645 304 10 4 1 247 1 300 4.33e-157 446
MsG0380015518.01.T01 MTR_5g083260 53.289 304 72 6 1 247 4 294 6.51e-95 288
MsG0380015518.01.T01 MTR_7g070060 53.448 116 52 1 92 205 63 178 5.57e-42 147
MsG0380015518.01.T01 MTR_4g014430 55.752 113 50 0 93 205 108 220 4.31e-41 148
MsG0380015518.01.T01 MTR_7g070060 53.448 116 52 1 92 205 63 178 1.28e-40 146
MsG0380015518.01.T01 MTR_3g070900 52.212 113 54 0 90 202 103 215 4.98e-39 143
MsG0380015518.01.T01 MTR_4g014440 48.507 134 67 1 74 205 43 176 1.53e-38 140
MsG0380015518.01.T01 MTR_8g463790 48.718 117 60 0 86 202 64 180 3.23e-37 137
MsG0380015518.01.T01 MTR_3g049330 39.865 148 84 2 93 236 31 177 5.95e-35 130
MsG0380015518.01.T01 MTR_5g082880 42.748 131 73 1 91 219 163 293 4.13e-34 130
MsG0380015518.01.T01 MTR_2g091175 38.732 142 86 1 86 227 43 183 3.02e-32 123
MsG0380015518.01.T01 MTR_7g068920 33.702 181 112 1 42 214 21 201 4.87e-32 123
MsG0380015518.01.T01 MTR_4g079700 36.424 151 88 2 93 236 47 196 1.03e-31 121
MsG0380015518.01.T01 MTR_4g016940 42.735 117 67 0 89 205 82 198 1.65e-31 122
MsG0380015518.01.T01 MTR_3g021060 41.860 129 74 1 86 214 39 166 2.54e-31 120
MsG0380015518.01.T01 MTR_5g033800 32.584 178 98 4 81 238 133 308 4.38e-31 120
MsG0380015518.01.T01 MTR_0136s0010 47.115 104 54 1 92 195 169 271 4.67e-31 122
MsG0380015518.01.T01 MTR_3g035830 43.220 118 66 1 86 203 24 140 5.22e-31 119
MsG0380015518.01.T01 MTR_3g021090 43.220 118 66 1 86 203 24 140 1.17e-30 119
MsG0380015518.01.T01 MTR_5g034810 37.195 164 89 4 90 249 32 185 3.79e-30 117
MsG0380015518.01.T01 MTR_5g033800 32.584 178 98 4 81 238 133 308 4.67e-30 119
MsG0380015518.01.T01 MTR_2g073510 33.117 154 97 3 89 237 29 181 5.04e-30 117
MsG0380015518.01.T01 MTR_3g464570 48.000 100 51 1 89 188 39 137 6.37e-30 117
MsG0380015518.01.T01 MTR_2g022560 47.788 113 55 2 79 188 80 191 1.31e-29 117
MsG0380015518.01.T01 MTR_1g112210 41.270 126 70 3 84 209 50 171 2.56e-29 115
MsG0380015518.01.T01 MTR_1g111010 41.429 140 74 3 91 225 30 166 2.68e-29 115
MsG0380015518.01.T01 MTR_7g093450 46.154 104 55 1 92 195 247 349 4.21e-29 117
MsG0380015518.01.T01 MTR_7g094750 44.860 107 58 1 88 194 86 191 4.70e-29 114
MsG0380015518.01.T01 MTR_4g088030 35.000 140 90 1 88 227 28 166 6.08e-29 114
MsG0380015518.01.T01 MTR_1g112210 40.458 131 76 2 84 214 50 178 6.93e-29 114
MsG0380015518.01.T01 MTR_4g126950 46.154 104 55 1 91 194 107 209 8.19e-29 115
MsG0380015518.01.T01 MTR_7g109550 46.721 122 61 2 64 182 105 225 1.02e-28 115
MsG0380015518.01.T01 MTR_7g094750 44.860 107 58 1 88 194 86 191 3.14e-28 113
MsG0380015518.01.T01 MTR_2g015720 38.519 135 81 2 93 227 42 174 5.02e-28 111
MsG0380015518.01.T01 MTR_5g071350 42.017 119 68 1 85 203 50 167 9.10e-28 111
MsG0380015518.01.T01 MTR_4g121560 37.008 127 74 1 56 182 83 203 1.10e-27 112
MsG0380015518.01.T01 MTR_1g050448 37.956 137 72 4 84 209 44 178 3.41e-27 109
MsG0380015518.01.T01 MTR_3g090120 42.308 104 57 1 82 182 118 221 8.19e-27 109
MsG0380015518.01.T01 MTR_5g059400 40.179 112 66 1 84 195 166 276 1.60e-26 109
MsG0380015518.01.T01 MTR_1g116130 40.179 112 66 1 84 195 166 276 1.60e-26 109
MsG0380015518.01.T01 MTR_4g087730 31.613 155 105 1 73 227 25 178 1.75e-26 107
MsG0380015518.01.T01 MTR_7g019140 34.356 163 91 5 24 185 23 170 3.22e-26 102
MsG0380015518.01.T01 MTR_1g076690 38.129 139 80 3 52 189 186 319 5.12e-26 108
MsG0380015518.01.T01 MTR_8g069790 34.228 149 77 3 92 220 177 324 2.32e-25 106
MsG0380015518.01.T01 MTR_1g058380 43.810 105 56 2 93 195 55 158 7.96e-25 103
MsG0380015518.01.T01 MTR_2g073500 35.915 142 85 3 90 225 26 167 2.58e-24 101
MsG0380015518.01.T01 MTR_6g061710 42.105 95 54 1 91 185 165 258 1.49e-23 100
MsG0380015518.01.T01 MTR_7g019120 38.983 118 71 1 65 182 51 167 2.26e-23 99.8
MsG0380015518.01.T01 MTR_8g093530 43.478 92 51 1 91 182 88 178 3.75e-23 99.4
MsG0380015518.01.T01 MTR_8g027900 37.008 127 69 2 61 187 189 304 1.40e-22 98.2
MsG0380015518.01.T01 MTR_5g035120 33.136 169 95 3 14 182 13 163 1.94e-22 92.4
MsG0380015518.01.T01 MTR_6g016880 47.826 92 47 1 91 182 76 166 6.14e-22 95.9
MsG0380015518.01.T01 MTR_6g007777 30.769 195 104 6 8 182 22 205 1.14e-21 95.1
MsG0380015518.01.T01 MTR_8g104970 42.718 103 58 1 80 182 107 208 2.45e-21 94.4
MsG0380015518.01.T01 MTR_2g016060 40.179 112 62 4 94 202 56 165 3.54e-20 90.5
MsG0380015518.01.T01 MTR_5g035090 42.000 100 55 2 84 182 74 171 3.73e-20 90.5
MsG0380015518.01.T01 MTR_6g016875 46.341 82 43 1 91 172 62 142 4.86e-20 90.1
MsG0380015518.01.T01 MTR_7g033230 41.748 103 59 1 80 182 251 352 1.37e-19 89.7
MsG0380015518.01.T01 MTR_7g033230 41.748 103 59 1 80 182 321 422 1.81e-19 89.4
MsG0380015518.01.T01 MTR_5g035080 38.000 100 61 1 83 182 65 163 2.62e-19 88.2
MsG0380015518.01.T01 MTR_5g035150 40.000 110 60 2 88 192 80 188 9.74e-19 86.7
MsG0380015518.01.T01 MTR_5g035070 40.217 92 54 1 83 174 77 167 2.56e-17 82.4
MsG0380015518.01.T01 MTR_8g099300 37.234 94 58 1 89 182 70 162 3.08e-17 82.0
MsG0380015518.01.T01 MTR_3g109840 36.364 121 70 3 62 182 47 160 9.63e-17 80.5
MsG0380015518.01.T01 MTR_8g093870 34.615 104 66 2 79 181 119 221 5.51e-16 78.6
MsG0380015518.01.T01 MTR_4g125060 36.893 103 63 2 81 182 120 221 6.31e-15 75.5
MsG0380015518.01.T01 MTR_4g125060 36.893 103 63 2 81 182 159 260 6.94e-15 75.5
MsG0380015518.01.T01 MTR_4g125060 36.893 103 63 2 81 182 188 289 7.55e-15 75.5
MsG0380015518.01.T01 MTR_7g070060 53.226 62 27 1 146 205 15 76 4.20e-14 72.0
MsG0380015518.01.T01 MTR_4g092830 35.165 91 57 2 93 182 48 137 6.65e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015518.01.T01 AT2G40320 48.973 292 78 7 15 249 17 294 9.08e-80 249
MsG0380015518.01.T01 AT3G11030 40.187 321 109 7 5 249 6 319 1.25e-67 218
MsG0380015518.01.T01 AT5G01620 49.650 143 71 1 64 205 81 223 4.01e-43 154
MsG0380015518.01.T01 AT5G01620 49.650 143 71 1 64 205 81 223 4.01e-43 154
MsG0380015518.01.T01 AT5G01620 49.650 143 71 1 64 205 89 231 5.39e-43 154
MsG0380015518.01.T01 AT3G55990 50.000 134 62 1 74 202 116 249 2.79e-38 141
MsG0380015518.01.T01 AT2G40150 54.955 111 50 0 92 202 70 180 2.24e-37 138
MsG0380015518.01.T01 AT1G73140 40.769 130 77 0 85 214 59 188 1.07e-35 133
MsG0380015518.01.T01 AT2G38320 40.816 147 84 2 61 204 26 172 1.56e-35 133
MsG0380015518.01.T01 AT2G40160 37.984 129 74 1 81 203 59 187 5.45e-35 129
MsG0380015518.01.T01 AT2G40160 37.984 129 74 1 81 203 59 187 5.34e-34 129
MsG0380015518.01.T01 AT1G78710 37.931 145 88 1 81 225 19 161 6.85e-34 126
MsG0380015518.01.T01 AT2G40160 37.984 129 74 1 81 203 59 187 7.73e-34 129
MsG0380015518.01.T01 AT1G78710 37.931 145 88 1 81 225 26 168 2.40e-33 126
MsG0380015518.01.T01 AT3G14850 40.714 140 82 1 88 227 29 167 6.94e-33 124
MsG0380015518.01.T01 AT2G30900 41.667 132 73 4 90 219 40 169 5.60e-32 120
MsG0380015518.01.T01 AT5G01360 42.857 119 68 0 87 205 30 148 6.51e-32 122
MsG0380015518.01.T01 AT5G01360 41.463 123 72 0 83 205 82 204 1.27e-31 122
MsG0380015518.01.T01 AT5G19160 53.000 100 46 1 87 186 93 191 3.37e-31 120
MsG0380015518.01.T01 AT1G60790 42.017 119 68 1 77 194 174 292 8.17e-31 122
MsG0380015518.01.T01 AT2G30900 41.667 132 73 4 90 219 40 169 1.21e-30 119
MsG0380015518.01.T01 AT2G42570 33.333 174 104 3 64 237 22 183 1.29e-30 119
MsG0380015518.01.T01 AT5G06700 43.089 123 69 1 72 194 234 355 1.37e-30 121
MsG0380015518.01.T01 AT5G19160 53.000 100 46 1 87 186 93 191 2.75e-30 119
MsG0380015518.01.T01 AT5G20590 44.860 107 59 0 88 194 136 242 3.41e-30 118
MsG0380015518.01.T01 AT3G62390 42.276 123 70 1 73 195 118 239 6.24e-30 117
MsG0380015518.01.T01 AT5G20590 44.860 107 59 0 88 194 136 242 1.67e-29 117
MsG0380015518.01.T01 AT3G62390 41.600 125 72 1 73 197 118 241 2.56e-29 117
MsG0380015518.01.T01 AT2G31110 38.060 134 82 1 92 225 44 176 4.39e-29 112
MsG0380015518.01.T01 AT5G49340 46.154 104 55 1 79 182 86 188 8.17e-29 115
MsG0380015518.01.T01 AT1G29050 32.099 162 105 2 85 242 53 213 5.03e-28 112
MsG0380015518.01.T01 AT2G31110 38.060 134 82 1 92 225 44 176 5.42e-28 111
MsG0380015518.01.T01 AT2G30010 37.179 156 94 3 62 215 26 179 6.79e-28 112
MsG0380015518.01.T01 AT2G30010 37.179 156 94 3 62 215 69 222 1.05e-27 112
MsG0380015518.01.T01 AT3G54260 46.789 109 55 3 93 201 51 156 1.18e-27 111
MsG0380015518.01.T01 AT2G34070 33.939 165 105 2 66 227 35 198 1.94e-27 110
MsG0380015518.01.T01 AT3G06080 46.154 104 55 1 87 190 97 199 3.55e-27 109
MsG0380015518.01.T01 AT5G58600 41.026 117 67 2 87 202 60 175 5.76e-27 107
MsG0380015518.01.T01 AT5G06230 43.636 110 57 1 91 195 60 169 2.07e-26 106
MsG0380015518.01.T01 AT3G06080 46.154 104 55 1 87 190 97 199 2.64e-26 108
MsG0380015518.01.T01 AT3G12060 41.667 108 62 1 88 195 191 297 2.98e-26 108
MsG0380015518.01.T01 AT5G58600 41.026 117 67 2 87 202 60 175 3.15e-26 107
MsG0380015518.01.T01 AT5G51640 46.535 101 53 1 82 182 127 226 5.40e-26 107
MsG0380015518.01.T01 AT5G06230 44.037 109 56 1 91 194 19 127 6.83e-26 106
MsG0380015518.01.T01 AT5G06230 43.636 110 57 1 91 195 60 169 9.80e-26 106
MsG0380015518.01.T01 AT1G48880 47.312 93 48 1 90 182 112 203 3.03e-25 105
MsG0380015518.01.T01 AT4G25360 43.564 101 56 1 85 185 167 266 1.24e-23 101
MsG0380015518.01.T01 AT4G25360 43.564 101 56 1 85 185 167 266 1.24e-23 101
MsG0380015518.01.T01 AT3G28150 48.387 93 47 1 90 182 67 158 2.77e-23 99.4
MsG0380015518.01.T01 AT5G15890 47.368 95 49 1 88 182 182 275 4.76e-23 99.8
MsG0380015518.01.T01 AT1G01430 43.617 94 52 1 92 185 98 190 2.10e-22 97.4
MsG0380015518.01.T01 AT2G38320 48.837 86 42 1 121 204 4 89 3.10e-22 95.5
MsG0380015518.01.T01 AT1G70230 43.158 95 53 1 88 182 74 167 1.17e-21 94.7
MsG0380015518.01.T01 AT3G11570 45.349 86 47 0 110 195 98 183 3.93e-21 93.6
MsG0380015518.01.T01 AT3G02440 40.952 105 61 1 93 197 135 238 5.68e-20 90.5
MsG0380015518.01.T01 AT3G02440 40.952 105 61 1 93 197 127 230 6.49e-20 90.1
MsG0380015518.01.T01 AT4G01080 45.055 91 49 1 92 182 90 179 1.03e-19 89.4
MsG0380015518.01.T01 AT4G11090 29.762 168 101 6 19 182 14 168 1.76e-19 88.6
MsG0380015518.01.T01 AT5G15900 44.565 92 48 2 93 182 67 157 2.91e-19 88.2
MsG0380015518.01.T01 AT5G15900 44.565 92 48 2 93 182 86 176 3.11e-19 88.2
MsG0380015518.01.T01 AT2G37720 42.553 94 52 2 89 181 139 231 9.42e-19 87.0
MsG0380015518.01.T01 AT4G23790 32.727 165 95 7 24 182 14 168 5.10e-18 84.3
MsG0380015518.01.T01 AT5G64020 40.000 90 52 2 93 181 57 145 2.45e-17 82.4
MsG0380015518.01.T01 AT5G64470 40.206 97 55 3 93 187 55 150 1.78e-15 76.3
MsG0380015518.01.T01 AT5G64470 40.206 97 55 3 93 187 55 150 1.90e-15 75.9
MsG0380015518.01.T01 AT5G64470 40.206 97 55 3 93 187 55 150 2.28e-15 76.6
MsG0380015518.01.T01 AT5G64470 40.206 97 55 3 93 187 55 150 2.36e-15 76.6
MsG0380015518.01.T01 AT5G20680 30.469 128 87 2 56 182 175 301 2.54e-14 73.9
MsG0380015518.01.T01 AT5G20680 30.469 128 87 2 56 182 175 301 2.54e-14 73.9
MsG0380015518.01.T01 AT5G20680 30.469 128 87 2 56 182 175 301 2.54e-14 73.9
MsG0380015518.01.T01 AT5G20680 30.469 128 87 2 56 182 175 301 2.54e-14 73.9
MsG0380015518.01.T01 AT5G20680 30.469 128 87 2 56 182 157 283 2.60e-14 73.6
MsG0380015518.01.T01 AT5G20680 30.469 128 87 2 56 182 81 207 3.29e-14 73.2
MsG0380015518.01.T01 AT2G14530 30.065 153 99 4 93 237 62 214 8.41e-13 68.9

Find 86 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTTGAGTAGAGATTATT+AGG 0.189329 3:-71310750 None:intergenic
TACAGTGTTGGTTTCAGTTT+TGG 0.193121 3:-71306522 None:intergenic
AGTAATAGTAATTAGTGTTT+TGG 0.247005 3:+71306330 MsG0380015518.01.T01:five_prime_UTR
ATCAAAGGTTTCCATAGATT+TGG 0.274989 3:-71309804 None:intergenic
CGTTCAAGAGGTGGAGAAAA+AGG 0.299849 3:+71306577 MsG0380015518.01.T01:CDS
TTCCATAGATTTGGCATGTT+GGG 0.300255 3:-71309795 None:intergenic
GTCAACTGTGGCTGTATATA+AGG 0.323921 3:-71306707 None:intergenic
TCCCCAACATGCCAAATCTA+TGG 0.329333 3:+71309793 MsG0380015518.01.T01:CDS
TTGTTGGGGACTCCCTCAAT+AGG 0.332252 3:+71309729 MsG0380015518.01.T01:CDS
TGTTGGGGACTCCCTCAATA+GGG 0.339146 3:+71309730 MsG0380015518.01.T01:CDS
GGATAAGAGGGTGAAGAGAT+AGG 0.350140 3:-71306420 None:intergenic
AAAGAGTGTGACTTGTTTAG+TGG 0.353179 3:+71306632 MsG0380015518.01.T01:CDS
CGTGAGGCTGCCACCGCAAC+CGG 0.384300 3:-71306766 None:intergenic
GGAAGAGGATGATGTTTGTT+GGG 0.394554 3:+71309714 MsG0380015518.01.T01:CDS
AAGTGTTTCTAGCATTAAAC+TGG 0.401534 3:-71309687 None:intergenic
AATTTGAGTAGAGATTATTA+GGG 0.410331 3:-71310749 None:intergenic
CTATGAAAAGTATGCTTAGA+TGG 0.410597 3:+71310845 MsG0380015518.01.T01:CDS
GTTCTGAGAAGAAGAGAAGA+AGG 0.410800 3:-71306380 None:intergenic
TTTCAGGCTTGGTTCTTTCA+AGG 0.415091 3:+71310771 MsG0380015518.01.T01:CDS
GAAGAAGACTCTAGTCTTGT+TGG 0.416282 3:-71310889 None:intergenic
CACCTCTTGAACGGTGTTGT+TGG 0.423545 3:-71306567 None:intergenic
AACTCGGATTCCCTGCCGTC+GGG 0.436597 3:+71310959 MsG0380015518.01.T01:CDS
AGCGGGGAATCCCCGACGGC+AGG 0.439925 3:-71310970 None:intergenic
TGAAGAGGATGATGGATAAG+AGG 0.445125 3:-71306433 None:intergenic
GGGTGGAGTTGTTGGAGGTG+TGG 0.455625 3:-71306500 None:intergenic
AACCGGCGGTACTCTTTATC+CGG 0.462447 3:-71306749 None:intergenic
GGGAAGAGGATGATGTTTGT+TGG 0.465024 3:+71309713 MsG0380015518.01.T01:CDS
ACCAGCATGTCGCCTTCTCA+TGG 0.465345 3:+71310912 MsG0380015518.01.T01:CDS
GGAGTTGTTGGAGGTGTGGA+CGG 0.484206 3:-71306496 None:intergenic
GTGACTTGTTTAGTGGAAGG+TGG 0.484839 3:+71306639 MsG0380015518.01.T01:CDS
TTCTGAGAAGAAGAGAAGAA+GGG 0.490474 3:-71306379 None:intergenic
CACTCAGATTCCTCATACAA+TGG 0.502594 3:-71306683 None:intergenic
GCGGGGAATCCCCGACGGCA+GGG 0.508346 3:-71310969 None:intergenic
ACACATACTGACCCCTATTG+AGG 0.508783 3:-71309742 None:intergenic
TCCATAGATTTGGCATGTTG+GGG 0.516832 3:-71309794 None:intergenic
GTTGACTAGGCCATTGTATG+AGG 0.522730 3:+71306673 MsG0380015518.01.T01:CDS
CACATACTGACCCCTATTGA+GGG 0.523741 3:-71309741 None:intergenic
TTGAATGAGTTTGCCATGCA+TGG 0.524798 3:-71306356 None:intergenic
GGAAGATGAAGAGGAAGTCA+TGG 0.527647 3:-71306475 None:intergenic
ATAAAGAGTACCGCCGGTTG+CGG 0.529348 3:+71306753 MsG0380015518.01.T01:CDS
TTTCCATAGATTTGGCATGT+TGG 0.529665 3:-71309796 None:intergenic
TAGAAACACTTCGTGGGAAG+AGG 0.532534 3:+71309699 MsG0380015518.01.T01:CDS
GGTGTGGACGGAAGATGAAG+AGG 0.540854 3:-71306484 None:intergenic
TGACTTGTTTAGTGGAAGGT+GGG 0.548503 3:+71306640 MsG0380015518.01.T01:CDS
GTCATGGGTGTTGAGGATGA+TGG 0.549061 3:-71306459 None:intergenic
GGCGGTACTCTTTATCCGGC+CGG 0.553038 3:-71306745 None:intergenic
CGTTGAAAAGAGTACAGTGT+TGG 0.555474 3:-71306534 None:intergenic
GTTGGGGACTCCCTCAATAG+GGG 0.559822 3:+71309731 MsG0380015518.01.T01:CDS
TCCATGAGAAGGCGACATGC+TGG 0.560559 3:-71310913 None:intergenic
CGGTTGCGGTGGCAGCCTCA+CGG 0.561215 3:+71306767 MsG0380015518.01.T01:CDS
GAAGAGGATGATGGATAAGA+GGG 0.563005 3:-71306432 None:intergenic
TGACTTGTCAAGAACATGGC+CGG 0.570301 3:+71306726 MsG0380015518.01.T01:CDS
GGCCGGATAAAGAGTACCGC+CGG 0.570651 3:+71306747 MsG0380015518.01.T01:CDS
GAAGACAGTGAGAGAATCAA+AGG 0.572213 3:-71309819 None:intergenic
TTGTCAAGAACATGGCCGGC+CGG 0.576259 3:+71306730 MsG0380015518.01.T01:CDS
GTTTAGTGGAAGGTGGGTGA+AGG 0.578303 3:+71306646 MsG0380015518.01.T01:CDS
AAGAGTACCGCCGGTTGCGG+TGG 0.579098 3:+71306756 MsG0380015518.01.T01:CDS
CATGTTGGGGAATAAGATGA+TGG 0.582684 3:-71309781 None:intergenic
GATGGCGGTGAAGAGGATGA+TGG 0.584689 3:-71306441 None:intergenic
TATACTCACTTTCCATGAGA+AGG 0.587719 3:-71310924 None:intergenic
TGAGGATGATGGCGGTGAAG+AGG 0.590325 3:-71306448 None:intergenic
GGGTGAAGGATGAGTTGACT+AGG 0.592083 3:+71306660 MsG0380015518.01.T01:CDS
AGAGGAAGTCATGGGTGTTG+AGG 0.594059 3:-71306466 None:intergenic
GTCCAACAACACCGTTCAAG+AGG 0.598897 3:+71306565 MsG0380015518.01.T01:CDS
GAAGAGGATGATGTTTGTTG+GGG 0.599533 3:+71309715 MsG0380015518.01.T01:CDS
CAACAACACCGTTCAAGAGG+TGG 0.599644 3:+71306568 MsG0380015518.01.T01:CDS
TAATGCTAGAAACACTTCGT+GGG 0.605384 3:+71309693 MsG0380015518.01.T01:CDS
CAGTTGACTTGTCAAGAACA+TGG 0.605838 3:+71306722 MsG0380015518.01.T01:CDS
TTAATGCTAGAAACACTTCG+TGG 0.607752 3:+71309692 MsG0380015518.01.T01:CDS
GAAGATGAAGAGGAAGTCAT+GGG 0.615378 3:-71306474 None:intergenic
TATGAAAAGTATGCTTAGAT+GGG 0.615716 3:+71310846 MsG0380015518.01.T01:CDS
GGGGAATAAGATGATGGAGA+AGG 0.617250 3:-71309775 None:intergenic
AAACTCGGATTCCCTGCCGT+CGG 0.618222 3:+71310958 MsG0380015518.01.T01:CDS
GAGGCTGCCACCGCAACCGG+CGG 0.622452 3:-71306763 None:intergenic
AACAGAGGAAGCCTATCGCA+TGG 0.627890 3:+71310822 MsG0380015518.01.T01:CDS
ACTCGGATTCCCTGCCGTCG+GGG 0.628281 3:+71310960 MsG0380015518.01.T01:CDS
GATTGTTGAGATGCAAACAG+AGG 0.642193 3:+71310807 MsG0380015518.01.T01:CDS
TGAAAGCGGGGAATCCCCGA+CGG 0.646320 3:-71310974 None:intergenic
TCTCACTGTCTTCACAGCCA+AGG 0.647375 3:+71309829 MsG0380015518.01.T01:CDS
ATTTGAGTAGAGATTATTAG+GGG 0.655551 3:-71310748 None:intergenic
AGTGTGACTTGTTTAGTGGA+AGG 0.659828 3:+71306636 MsG0380015518.01.T01:CDS
TATACTATAATTCACAAACT+CGG 0.676427 3:+71310943 MsG0380015518.01.T01:CDS
TGTTCTTGACAAGTCAACTG+TGG 0.695267 3:-71306719 None:intergenic
TTGGGAAGATCGCAACCGTG+AGG 0.715139 3:-71306782 None:intergenic
AAGAGATAGGAAGAAAGACG+AGG 0.721315 3:-71306407 None:intergenic
ATGGGTGTTGAGGATGATGG+CGG 0.751697 3:-71306456 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATTTATCGAATATAG+TGG - Chr3:71310692-71310711 None:intergenic 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + Chr3:71307193-71307212 MsG0380015518.01.T01:intron 15.0%
!! TATTAATATGAATTCATGTA+AGG - Chr3:71307705-71307724 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + Chr3:71307192-71307211 MsG0380015518.01.T01:intron 15.0%
!! TCAAAAAATAAGAATGAATT+GGG - Chr3:71307867-71307886 None:intergenic 15.0%
!! TCATATTGTTGTATTTAATT+AGG + Chr3:71310455-71310474 MsG0380015518.01.T01:intron 15.0%
!!! ACTAAATTATACTTTTAACT+TGG - Chr3:71308146-71308165 None:intergenic 15.0%
!!! ATAAATCTCGAATTTTTTAA+AGG - Chr3:71307409-71307428 None:intergenic 15.0%
!!! ATTTTGTAATAGTAGTTTAA+TGG + Chr3:71307027-71307046 MsG0380015518.01.T01:intron 15.0%
!!! GTTTTGATATTTATTTTTTG+TGG - Chr3:71308656-71308675 None:intergenic 15.0%
!!! TTGATAAATTTTGTTTTGTT+TGG - Chr3:71307563-71307582 None:intergenic 15.0%
!!! TTTAGACTTAAAATCAATTT+TGG + Chr3:71309907-71309926 MsG0380015518.01.T01:intron 15.0%
!! AAAAGTGGAATATATTGTAT+TGG + Chr3:71307151-71307170 MsG0380015518.01.T01:intron 20.0%
!! AAAGTGGAATATATTGTATT+GGG + Chr3:71307152-71307171 MsG0380015518.01.T01:intron 20.0%
!! AAATTTGAGTAGAGATTATT+AGG - Chr3:71310753-71310772 None:intergenic 20.0%
!! AATACAACAATATGAACATA+TGG - Chr3:71310450-71310469 None:intergenic 20.0%
!! AATTTGAGTAGAGATTATTA+GGG - Chr3:71310752-71310771 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + Chr3:71307225-71307244 MsG0380015518.01.T01:intron 20.0%
!! CAATAAAGTTAAAATGTACT+AGG + Chr3:71309110-71309129 MsG0380015518.01.T01:intron 20.0%
!! GTCAAAAAATAAGAATGAAT+TGG - Chr3:71307868-71307887 None:intergenic 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG + Chr3:71307226-71307245 MsG0380015518.01.T01:intron 20.0%
!! TATACTATAATTCACAAACT+CGG + Chr3:71310943-71310962 MsG0380015518.01.T01:CDS 20.0%
!! TCATGCATTAAAAATATATG+TGG + Chr3:71310994-71311013 MsG0380015518.01.T01:CDS 20.0%
!!! AAGAAAAGTGTATAAATGAA+GGG + Chr3:71307128-71307147 MsG0380015518.01.T01:intron 20.0%
!!! ACTAGAATAAAGACTTATTT+TGG - Chr3:71308009-71308028 None:intergenic 20.0%
!!! AGTAATAGTAATTAGTGTTT+TGG + Chr3:71306330-71306349 MsG0380015518.01.T01:five_prime_UTR 20.0%
!!! ATAATAAACTAGCTTTATGT+TGG + Chr3:71309552-71309571 MsG0380015518.01.T01:intron 20.0%
!!! ATAGAAATGTTTACAAGTTT+TGG + Chr3:71307600-71307619 MsG0380015518.01.T01:intron 20.0%
!!! ATAGACTATTGTATATTTTG+AGG - Chr3:71310138-71310157 None:intergenic 20.0%
!!! ATATTTTTAATGCATGAAAG+CGG - Chr3:71310991-71311010 None:intergenic 20.0%
!!! ATTAATAATGCCACTAATTT+TGG + Chr3:71307718-71307737 MsG0380015518.01.T01:intron 20.0%
!!! CTAGATATTTTGAAAACTAA+GGG + Chr3:71310311-71310330 MsG0380015518.01.T01:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + Chr3:71307262-71307281 MsG0380015518.01.T01:intron 20.0%
!!! GTAATAGTAATTAGTGTTTT+GGG + Chr3:71306331-71306350 MsG0380015518.01.T01:five_prime_UTR 20.0%
!!! TAAGAAAAGTGTATAAATGA+AGG + Chr3:71307127-71307146 MsG0380015518.01.T01:intron 20.0%
!!! TAATAGTAATTAGTGTTTTG+GGG + Chr3:71306332-71306351 MsG0380015518.01.T01:five_prime_UTR 20.0%
!!! TAGATATTTTGAAAACTAAG+GGG + Chr3:71310312-71310331 MsG0380015518.01.T01:intron 20.0%
!!! TATTGCGCTATTATATTTTT+CGG - Chr3:71308678-71308697 None:intergenic 20.0%
!!! TCTTTTTTGACTCAATATAT+TGG - Chr3:71308612-71308631 None:intergenic 20.0%
!!! TGATAATTGATAATACAACA+CGG + Chr3:71308064-71308083 MsG0380015518.01.T01:intron 20.0%
!!! TGTAGTATCAATTTTCTTTA+TGG + Chr3:71309249-71309268 MsG0380015518.01.T01:intron 20.0%
!!! TTGTTTTATCTTTAATCGAA+CGG - Chr3:71311020-71311039 None:intergenic 20.0%
!!! TTTTGTTTCATTTACCATTT+TGG - Chr3:71310367-71310386 None:intergenic 20.0%
! AAAAACACGTAAATTTGATG+TGG + Chr3:71310164-71310183 MsG0380015518.01.T01:intron 25.0%
! AACATAAGCATATACTTACT+TGG - Chr3:71306804-71306823 None:intergenic 25.0%
! AACCTCAAAATGTATTAATG+GGG - Chr3:71310021-71310040 None:intergenic 25.0%
! AACTGATAGAATTGTAAGAA+AGG + Chr3:71310556-71310575 MsG0380015518.01.T01:intron 25.0%
! AATGTAGATGTTTATGACTT+GGG + Chr3:71308029-71308048 MsG0380015518.01.T01:intron 25.0%
! ACATAAGCATATACTTACTT+GGG - Chr3:71306803-71306822 None:intergenic 25.0%
! ACTGATAGAATTGTAAGAAA+GGG + Chr3:71310557-71310576 MsG0380015518.01.T01:intron 25.0%
! ACTTTCTATTACTAGTTGAT+TGG - Chr3:71309173-71309192 None:intergenic 25.0%
! ATATGGAGAAAAGAAAGAAA+AGG - Chr3:71310433-71310452 None:intergenic 25.0%
! ATTTGAGTAGAGATTATTAG+GGG - Chr3:71310751-71310770 None:intergenic 25.0%
! CAAAATTAGTACTTTCTAGA+AGG - Chr3:71309519-71309538 None:intergenic 25.0%
! CAACCTCAAAATGTATTAAT+GGG - Chr3:71310022-71310041 None:intergenic 25.0%
! CTCGTAATAATAAGAAGAAT+TGG + Chr3:71309298-71309317 MsG0380015518.01.T01:intron 25.0%
! CTTCTTATTATTACGAGAAA+TGG - Chr3:71309295-71309314 None:intergenic 25.0%
! TAAATGCTTAAATGCAGATT+TGG - Chr3:71310400-71310419 None:intergenic 25.0%
! TAACAACATTTGATATGTGT+AGG + Chr3:71307501-71307520 MsG0380015518.01.T01:intron 25.0%
! TAATGTAGATGTTTATGACT+TGG + Chr3:71308028-71308047 MsG0380015518.01.T01:intron 25.0%
! TCAACCTCAAAATGTATTAA+TGG - Chr3:71310023-71310042 None:intergenic 25.0%
! TCATTTCCTTTGTAAAATCT+TGG - Chr3:71308929-71308948 None:intergenic 25.0%
! TTATACAAGGAGCAAAATAT+TGG + Chr3:71307319-71307338 MsG0380015518.01.T01:intron 25.0%
!! AGGATTTTGAATTTCTTCAA+AGG + Chr3:71309596-71309615 MsG0380015518.01.T01:intron 25.0%
!! TAATCTCTACTCAAATTTTC+AGG + Chr3:71310755-71310774 MsG0380015518.01.T01:CDS 25.0%
!! TATGAAAAGTATGCTTAGAT+GGG + Chr3:71310846-71310865 MsG0380015518.01.T01:CDS 25.0%
!! TCAAACATTTTTATCCTGTA+TGG + Chr3:71307910-71307929 MsG0380015518.01.T01:intron 25.0%
!!! CTAGAAAGTACTAATTTTGT+TGG + Chr3:71309520-71309539 MsG0380015518.01.T01:intron 25.0%
!!! GAGTACTATAGTTTTATACA+AGG + Chr3:71307306-71307325 MsG0380015518.01.T01:intron 25.0%
!!! GATGTTAACGATTTTAGTTA+AGG + Chr3:71308548-71308567 MsG0380015518.01.T01:intron 25.0%
!!! GCTAGATATTTTGAAAACTA+AGG + Chr3:71310310-71310329 MsG0380015518.01.T01:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + Chr3:71307261-71307280 MsG0380015518.01.T01:intron 25.0%
!!! TATTTTTAATGCATGAAAGC+GGG - Chr3:71310990-71311009 None:intergenic 25.0%
!!! TTTATCGAATATAGTGGATT+AGG - Chr3:71310686-71310705 None:intergenic 25.0%
!!! TTTTAACTTTATTGCCCAAT+TGG - Chr3:71309104-71309123 None:intergenic 25.0%
AAATGTTAATCCTCAAACCA+CGG - Chr3:71308767-71308786 None:intergenic 30.0%
AACGTACAATATCTTCATGT+TGG - Chr3:71310663-71310682 None:intergenic 30.0%
AATAAGAATGAATTGGGACT+TGG - Chr3:71307861-71307880 None:intergenic 30.0%
AATCGCAATAAGTGAATCAT+CGG + Chr3:71308382-71308401 MsG0380015518.01.T01:intron 30.0%
ACAAAAACGTCGAAATTGTT+AGG + Chr3:71309428-71309447 MsG0380015518.01.T01:intron 30.0%
ATAAGAATGAATTGGGACTT+GGG - Chr3:71307860-71307879 None:intergenic 30.0%
ATCAAAGGTTTCCATAGATT+TGG - Chr3:71309807-71309826 None:intergenic 30.0%
ATGCTACAATTGAGTTCTAT+TGG + Chr3:71310484-71310503 MsG0380015518.01.T01:intron 30.0%
ATTCTTCCTAACGTCAATTT+AGG - Chr3:71307807-71307826 None:intergenic 30.0%
CACAAAAGTTGTCACATATA+TGG - Chr3:71308902-71308921 None:intergenic 30.0%
CCTAAAAACTTCGTTGTTTA+AGG + Chr3:71308586-71308605 MsG0380015518.01.T01:intron 30.0%
CTTGAAAATAAAATTTCCCG+TGG - Chr3:71309218-71309237 None:intergenic 30.0%
GAAGAAATTCAAAATCCTTC+AGG - Chr3:71309594-71309613 None:intergenic 30.0%
GGAGTTTGATTCAAAAGAAA+AGG - Chr3:71310513-71310532 None:intergenic 30.0%
GTCACAAAAGTTGTCAAAAA+TGG + Chr3:71309011-71309030 MsG0380015518.01.T01:intron 30.0%
TAAAAATGGAGAGACCAAAA+TGG + Chr3:71310350-71310369 MsG0380015518.01.T01:intron 30.0%
TGCTACAATTGAGTTCTATT+GGG + Chr3:71310485-71310504 MsG0380015518.01.T01:intron 30.0%
TGTATAAATGAAGGGAAAAG+TGG + Chr3:71307136-71307155 MsG0380015518.01.T01:intron 30.0%
TTTACACCGACAATATTGTA+CGG - Chr3:71307053-71307072 None:intergenic 30.0%
! AATGACCACTATTTTCTTGA+TGG + Chr3:71308799-71308818 MsG0380015518.01.T01:intron 30.0%
! AGTCAGAAATTTAGTTTAGG+GGG + Chr3:71308119-71308138 MsG0380015518.01.T01:intron 30.0%
! ATTGTTGTTATGTTAGAACC+TGG + Chr3:71307456-71307475 MsG0380015518.01.T01:intron 30.0%
! ATTTTTAATGCATGAAAGCG+GGG - Chr3:71310989-71311008 None:intergenic 30.0%
! CCTTAAACAACGAAGTTTTT+AGG - Chr3:71308589-71308608 None:intergenic 30.0%
! CTATGAAAAGTATGCTTAGA+TGG + Chr3:71310845-71310864 MsG0380015518.01.T01:CDS 30.0%
! GAGTCAGAAATTTAGTTTAG+GGG + Chr3:71308118-71308137 MsG0380015518.01.T01:intron 30.0%
! GGAGTCAGAAATTTAGTTTA+GGG + Chr3:71308117-71308136 MsG0380015518.01.T01:intron 30.0%
! GTGAATTGGAATTCTAGTTA+AGG + Chr3:71308478-71308497 MsG0380015518.01.T01:intron 30.0%
! TGACAACCAAGATTTTACAA+AGG + Chr3:71308920-71308939 MsG0380015518.01.T01:intron 30.0%
! TTCCCCATTAATACATTTTG+AGG + Chr3:71310016-71310035 MsG0380015518.01.T01:intron 30.0%
! TTGAAATGGGTCAGTTATTT+TGG + Chr3:71307239-71307258 MsG0380015518.01.T01:intron 30.0%
! TTTATCTGTTTCTTCTGGAA+TGG + Chr3:71307677-71307696 MsG0380015518.01.T01:intron 30.0%
!! AAGTGTTTCTAGCATTAAAC+TGG - Chr3:71309690-71309709 None:intergenic 30.0%
!! CATGAAAATGAGTTCTAAGT+TGG - Chr3:71310209-71310228 None:intergenic 30.0%
!! GACATTTTATCTGTTTCTTC+TGG + Chr3:71307672-71307691 MsG0380015518.01.T01:intron 30.0%
!! GGTTGATTTTTCACATGATT+TGG - Chr3:71310267-71310286 None:intergenic 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG + Chr3:71307240-71307259 MsG0380015518.01.T01:intron 30.0%
!! TTATCTGTTTCTTCTGGAAT+GGG + Chr3:71307678-71307697 MsG0380015518.01.T01:intron 30.0%
!! TTTACAAGTTTTGGCAAACA+AGG + Chr3:71307609-71307628 MsG0380015518.01.T01:intron 30.0%
!! TTTTGCCTTATTCACGATTT+TGG + Chr3:71309937-71309956 MsG0380015518.01.T01:intron 30.0%
!! TTTTTCCTCAAAAGTTCTGA+GGG + Chr3:71308706-71308725 MsG0380015518.01.T01:intron 30.0%
!!! TAAGCGACTTTGTTTTTTGT+AGG + Chr3:71307650-71307669 MsG0380015518.01.T01:intron 30.0%
!!! TTTTTTACGGGTCAAGTTAA+CGG + Chr3:71306852-71306871 MsG0380015518.01.T01:intron 30.0%
!!! TTTTTTCCTCAAAAGTTCTG+AGG + Chr3:71308705-71308724 MsG0380015518.01.T01:intron 30.0%
AAATCAAGGGACTTTAATCG+TGG - Chr3:71309980-71309999 None:intergenic 35.0%
AACAACGAAAATGCAAACGT+AGG + Chr3:71308352-71308371 MsG0380015518.01.T01:intron 35.0%
AAGGGTTCAATCAATAAGCA+CGG + Chr3:71310575-71310594 MsG0380015518.01.T01:intron 35.0%
AATAAGTGAATCATCGGTAG+TGG + Chr3:71308388-71308407 MsG0380015518.01.T01:intron 35.0%
AATCGTGGAATTTGATATCG+AGG - Chr3:71309965-71309984 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG + Chr3:71307275-71307294 MsG0380015518.01.T01:intron 35.0%
AGAGATCCAATGAAAAACCA+CGG + Chr3:71309198-71309217 MsG0380015518.01.T01:intron 35.0%
ATCAACCCAAAATGCATAGA+TGG + Chr3:71310280-71310299 MsG0380015518.01.T01:intron 35.0%
ATCGTGGAATTTGATATCGA+GGG - Chr3:71309964-71309983 None:intergenic 35.0%
ATGTATTAATGGGGAAGAGT+CGG - Chr3:71310012-71310031 None:intergenic 35.0%
ATTCAACACCTATCTTTGGT+GGG + Chr3:71310628-71310647 MsG0380015518.01.T01:intron 35.0%
ATTGAGACAGACATCTAGAA+CGG + Chr3:71308096-71308115 MsG0380015518.01.T01:intron 35.0%
CAAACCTGCGGATTTAAAAA+TGG + Chr3:71310336-71310355 MsG0380015518.01.T01:intron 35.0%
CAAAGTAGGTCAATTATACC+GGG - Chr3:71307092-71307111 None:intergenic 35.0%
CAATTCTATCAGTTACCCTA+TGG - Chr3:71310550-71310569 None:intergenic 35.0%
CCAAAGTAGGTCAATTATAC+CGG - Chr3:71307093-71307112 None:intergenic 35.0%
GATGATGTGAACTATCTACA+TGG + Chr3:71310085-71310104 MsG0380015518.01.T01:intron 35.0%
GATGTGGAACATTATTTACG+TGG + Chr3:71310180-71310199 MsG0380015518.01.T01:intron 35.0%
GGAGAAAAGAAAGAAAAGGA+TGG - Chr3:71310429-71310448 None:intergenic 35.0%
GTCAACCATCAAGAAAATAG+TGG - Chr3:71308807-71308826 None:intergenic 35.0%
GTGTCGCAATCAAATTATGA+GGG - Chr3:71307745-71307764 None:intergenic 35.0%
TAACTTTATTGCCCAATTGG+AGG - Chr3:71309101-71309120 None:intergenic 35.0%
TAATGCTAGAAACACTTCGT+GGG + Chr3:71309693-71309712 MsG0380015518.01.T01:CDS 35.0%
TAATGGCCGTACAATATTGT+CGG + Chr3:71307044-71307063 MsG0380015518.01.T01:intron 35.0%
TACAACGAAGAATCGTGAAT+TGG + Chr3:71308464-71308483 MsG0380015518.01.T01:intron 35.0%
TACCGACATTCAGAAAACAT+TGG + Chr3:71306906-71306925 MsG0380015518.01.T01:intron 35.0%
TATACTCACTTTCCATGAGA+AGG - Chr3:71310927-71310946 None:intergenic 35.0%
TATTCAACACCTATCTTTGG+TGG + Chr3:71310627-71310646 MsG0380015518.01.T01:intron 35.0%
TCAACCCAAAATGCATAGAT+GGG + Chr3:71310281-71310300 MsG0380015518.01.T01:intron 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - Chr3:71307106-71307125 None:intergenic 35.0%
TGTGTCGCAATCAAATTATG+AGG - Chr3:71307746-71307765 None:intergenic 35.0%
TTAATGCTAGAAACACTTCG+TGG + Chr3:71309692-71309711 MsG0380015518.01.T01:CDS 35.0%
TTATGAGGGACCAAAATTAG+TGG - Chr3:71307731-71307750 None:intergenic 35.0%
TTCCATAGATTTGGCATGTT+GGG - Chr3:71309798-71309817 None:intergenic 35.0%
TTGTGATATCTGTGTGCAAA+AGG + Chr3:71307428-71307447 MsG0380015518.01.T01:intron 35.0%
TTTCCATAGATTTGGCATGT+TGG - Chr3:71309799-71309818 None:intergenic 35.0%
TTTGTTTGGTAAAACCTTGC+TGG - Chr3:71307549-71307568 None:intergenic 35.0%
! AATTTCCCGTGGTTTTTCAT+TGG - Chr3:71309207-71309226 None:intergenic 35.0%
! CAACACTGTACTCTTTTCAA+CGG + Chr3:71306535-71306554 MsG0380015518.01.T01:CDS 35.0%
! CACTGTCTTTTTACCATATG+GGG + Chr3:71309074-71309093 MsG0380015518.01.T01:intron 35.0%
! CATTTTTAAATCCGCAGGTT+TGG - Chr3:71310338-71310357 None:intergenic 35.0%
! CGGAGTCAGAAATTTAGTTT+AGG + Chr3:71308116-71308135 MsG0380015518.01.T01:intron 35.0%
! CTCCAATGTTTTCTGAATGT+CGG - Chr3:71306911-71306930 None:intergenic 35.0%
! CTTTCTTTTTGTATACGTGC+TGG + Chr3:71306829-71306848 MsG0380015518.01.T01:intron 35.0%
! GCACTGTCTTTTTACCATAT+GGG + Chr3:71309073-71309092 MsG0380015518.01.T01:intron 35.0%
! TGCACTGTCTTTTTACCATA+TGG + Chr3:71309072-71309091 MsG0380015518.01.T01:intron 35.0%
! TGGCATTGAATCTGTAACAT+TGG - Chr3:71309670-71309689 None:intergenic 35.0%
! TTCTGAGAAGAAGAGAAGAA+GGG - Chr3:71306382-71306401 None:intergenic 35.0%
! TTTCCCCATCTATGCATTTT+GGG - Chr3:71310288-71310307 None:intergenic 35.0%
! TTTCTAGAAGGAGAACTTCA+AGG - Chr3:71309507-71309526 None:intergenic 35.0%
! TTTTCCCCATCTATGCATTT+TGG - Chr3:71310289-71310308 None:intergenic 35.0%
!! AAAGAGTGTGACTTGTTTAG+TGG + Chr3:71306632-71306651 MsG0380015518.01.T01:CDS 35.0%
!! TCTACTCAAATTTTCAGGCT+TGG + Chr3:71310760-71310779 MsG0380015518.01.T01:CDS 35.0%
!!! ACAGTGTTGGTTTCAGTTTT+GGG - Chr3:71306524-71306543 None:intergenic 35.0%
!!! GACTTATTTTGGTGTGTTCA+CGG - Chr3:71307998-71308017 None:intergenic 35.0%
!!! GTATACGTGCTGGTTTTTTA+CGG + Chr3:71306839-71306858 MsG0380015518.01.T01:intron 35.0%
!!! TACAGTGTTGGTTTCAGTTT+TGG - Chr3:71306525-71306544 None:intergenic 35.0%
!!! TATACGTGCTGGTTTTTTAC+GGG + Chr3:71306840-71306859 MsG0380015518.01.T01:intron 35.0%
!!! TCGGTCGTTTTGAAAATCAA+GGG - Chr3:71309993-71310012 None:intergenic 35.0%
AACGAAAATGCAAACGTAGG+AGG + Chr3:71308355-71308374 MsG0380015518.01.T01:intron 40.0%
AACGCACCTAAATTGACGTT+AGG + Chr3:71307798-71307817 MsG0380015518.01.T01:intron 40.0%
AAGAGATAGGAAGAAAGACG+AGG - Chr3:71306410-71306429 None:intergenic 40.0%
AGGGACCAAAATCGTGAATA+AGG - Chr3:71309945-71309964 None:intergenic 40.0%
AGTTCGTGACATTTCCATAC+AGG - Chr3:71307927-71307946 None:intergenic 40.0%
CAACCCAAAATGCATAGATG+GGG + Chr3:71310282-71310301 MsG0380015518.01.T01:intron 40.0%
CACTCAGATTCCTCATACAA+TGG - Chr3:71306686-71306705 None:intergenic 40.0%
CATGTTGGGGAATAAGATGA+TGG - Chr3:71309784-71309803 None:intergenic 40.0%
CCGGTATAATTGACCTACTT+TGG + Chr3:71307090-71307109 MsG0380015518.01.T01:intron 40.0%
CCTATGGATGACAGCATTAT+CGG - Chr3:71310534-71310553 None:intergenic 40.0%
CGATAATGCTGTCATCCATA+GGG + Chr3:71310532-71310551 MsG0380015518.01.T01:intron 40.0%
GAAGACAGTGAGAGAATCAA+AGG - Chr3:71309822-71309841 None:intergenic 40.0%
GAAGATGAAGAGGAAGTCAT+GGG - Chr3:71306477-71306496 None:intergenic 40.0%
GAGATCCAATGAAAAACCAC+GGG + Chr3:71309199-71309218 MsG0380015518.01.T01:intron 40.0%
GATAGTTCACATCATCAACC+AGG - Chr3:71310081-71310100 None:intergenic 40.0%
GATGGGTGAAAAATGACACA+TGG + Chr3:71310863-71310882 MsG0380015518.01.T01:CDS 40.0%
GATTGTTGAGATGCAAACAG+AGG + Chr3:71310807-71310826 MsG0380015518.01.T01:CDS 40.0%
GCACATAAGCTATGAGCAAA+AGG - Chr3:71309865-71309884 None:intergenic 40.0%
GGAAGAGGATGATGTTTGTT+GGG + Chr3:71309714-71309733 MsG0380015518.01.T01:CDS 40.0%
GGGTATTCAACACCTATCTT+TGG + Chr3:71310624-71310643 MsG0380015518.01.T01:intron 40.0%
GTCAACTGTGGCTGTATATA+AGG - Chr3:71306710-71306729 None:intergenic 40.0%
GTCCATAAGTCCTATCTCAA+CGG + Chr3:71309405-71309424 MsG0380015518.01.T01:intron 40.0%
TCAATAAGCACGGTCGTTAT+TGG + Chr3:71310585-71310604 MsG0380015518.01.T01:intron 40.0%
TCCATAGATTTGGCATGTTG+GGG - Chr3:71309797-71309816 None:intergenic 40.0%
TCGATTTCACAATTCCAGCA+AGG + Chr3:71307532-71307551 MsG0380015518.01.T01:intron 40.0%
TGGTAAAAAGACAGTGCATG+TGG - Chr3:71309070-71309089 None:intergenic 40.0%
TGTTCTTGACAAGTCAACTG+TGG - Chr3:71306722-71306741 None:intergenic 40.0%
TTGAATGAGTTTGCCATGCA+TGG - Chr3:71306359-71306378 None:intergenic 40.0%
! ACGTTTTTGTCCGTTGAGAT+AGG - Chr3:71309418-71309437 None:intergenic 40.0%
! ACTTTTCATAGCCATGCGAT+AGG - Chr3:71310836-71310855 None:intergenic 40.0%
! ATTGGAAAGGCACAGACATT+TGG + Chr3:71310603-71310622 MsG0380015518.01.T01:intron 40.0%
! CGTTGAAAAGAGTACAGTGT+TGG - Chr3:71306537-71306556 None:intergenic 40.0%
! CTTTTTCTCCACCTCTTGAA+CGG - Chr3:71306579-71306598 None:intergenic 40.0%
! GAAGAGGATGATGTTTGTTG+GGG + Chr3:71309715-71309734 MsG0380015518.01.T01:CDS 40.0%
! TTCTTGATGGTTGACACTTC+TGG + Chr3:71308812-71308831 MsG0380015518.01.T01:intron 40.0%
! TTGGAAAGGCACAGACATTT+GGG + Chr3:71310604-71310623 MsG0380015518.01.T01:intron 40.0%
! TTTCAGGCTTGGTTCTTTCA+AGG + Chr3:71310771-71310790 MsG0380015518.01.T01:CDS 40.0%
!! ACAAGTTTTGGCAAACAAGG+CGG + Chr3:71307612-71307631 MsG0380015518.01.T01:intron 40.0%
!! AGTGTGACTTGTTTAGTGGA+AGG + Chr3:71306636-71306655 MsG0380015518.01.T01:CDS 40.0%
!! ATTAGGGGCTAGTTATGCAA+TGG - Chr3:71310736-71310755 None:intergenic 40.0%
!! CAGTTGACTTGTCAAGAACA+TGG + Chr3:71306722-71306741 MsG0380015518.01.T01:CDS 40.0%
!! CTCTCCATTTTTAAATCCGC+AGG - Chr3:71310343-71310362 None:intergenic 40.0%
!! GAAGAAGACTCTAGTCTTGT+TGG - Chr3:71310892-71310911 None:intergenic 40.0%
!! GAAGAGGATGATGGATAAGA+GGG - Chr3:71306435-71306454 None:intergenic 40.0%
!! GTTCTGAGAAGAAGAGAAGA+AGG - Chr3:71306383-71306402 None:intergenic 40.0%
!! TGAAGAGGATGATGGATAAG+AGG - Chr3:71306436-71306455 None:intergenic 40.0%
!! TGACTTGTTTAGTGGAAGGT+GGG + Chr3:71306640-71306659 MsG0380015518.01.T01:CDS 40.0%
!! TTTCTTGCTGTGTCTTTTGC+AGG - Chr3:71309142-71309161 None:intergenic 40.0%
!!! CAGTGTTGGTTTCAGTTTTG+GGG - Chr3:71306523-71306542 None:intergenic 40.0%
!!! GTCGGTCGTTTTGAAAATCA+AGG - Chr3:71309994-71310013 None:intergenic 40.0%
AAGCACGGTCGTTATTGGAA+AGG + Chr3:71310590-71310609 MsG0380015518.01.T01:intron 45.0%
ACACATACTGACCCCTATTG+AGG - Chr3:71309745-71309764 None:intergenic 45.0%
ATGGGTCAGTTATTCCGGAA+CGG + Chr3:71307280-71307299 MsG0380015518.01.T01:intron 45.0%
CAAAAGGTAGCTAGCTACCT+TGG - Chr3:71309849-71309868 None:intergenic 45.0%
CACATACTGACCCCTATTGA+GGG - Chr3:71309744-71309763 None:intergenic 45.0%
CACATTGCATAGTTCGAACC+AGG - Chr3:71307477-71307496 None:intergenic 45.0%
CCGATAATGCTGTCATCCAT+AGG + Chr3:71310531-71310550 MsG0380015518.01.T01:intron 45.0%
CGTTCAAGAGGTGGAGAAAA+AGG + Chr3:71306577-71306596 MsG0380015518.01.T01:CDS 45.0%
GAGATGCTTATGTGACAACC+TGG + Chr3:71310060-71310079 MsG0380015518.01.T01:intron 45.0%
GGAAGATGAAGAGGAAGTCA+TGG - Chr3:71306478-71306497 None:intergenic 45.0%
GGATAAGAGGGTGAAGAGAT+AGG - Chr3:71306423-71306442 None:intergenic 45.0%
GGGAAGAGGATGATGTTTGT+TGG + Chr3:71309713-71309732 MsG0380015518.01.T01:CDS 45.0%
GTAGGTCAATTATACCGGGA+CGG - Chr3:71307088-71307107 None:intergenic 45.0%
GTCCGTTGAGATAGGACTTA+TGG - Chr3:71309410-71309429 None:intergenic 45.0%
GTGGGTCAGAGTGTAATTGT+TGG + Chr3:71306877-71306896 MsG0380015518.01.T01:intron 45.0%
GTTAATCCTCAAACCACGGA+CGG - Chr3:71308763-71308782 None:intergenic 45.0%
GTTGACTAGGCCATTGTATG+AGG + Chr3:71306673-71306692 MsG0380015518.01.T01:CDS 45.0%
TAGAAACACTTCGTGGGAAG+AGG + Chr3:71309699-71309718 MsG0380015518.01.T01:CDS 45.0%
TCCCCAACATGCCAAATCTA+TGG + Chr3:71309793-71309812 MsG0380015518.01.T01:CDS 45.0%
TCCTGAATACACACACCTGA+AGG + Chr3:71309576-71309595 MsG0380015518.01.T01:intron 45.0%
TCCTTCAGGTGTGTGTATTC+AGG - Chr3:71309580-71309599 None:intergenic 45.0%
TTTACGGGTCAAGTTAACGG+TGG + Chr3:71306855-71306874 MsG0380015518.01.T01:intron 45.0%
! ACCTATCTTTGGTGGGTAAC+TGG + Chr3:71310635-71310654 MsG0380015518.01.T01:intron 45.0%
! TGACTTGTCAAGAACATGGC+CGG + Chr3:71306726-71306745 MsG0380015518.01.T01:CDS 45.0%
!! GGGGAATAAGATGATGGAGA+AGG - Chr3:71309778-71309797 None:intergenic 45.0%
!! GTGACTTGTTTAGTGGAAGG+TGG + Chr3:71306639-71306658 MsG0380015518.01.T01:CDS 45.0%
!!! TGTTGGTTTCAGTTTTGGGG+TGG - Chr3:71306520-71306539 None:intergenic 45.0%
!! AATAAATAATAAAAAACATT+CGG + Chr3:71306963-71306982 MsG0380015518.01.T01:intron 5.0%
AAACTAAGGGGCCAAACCTG+CGG + Chr3:71310324-71310343 MsG0380015518.01.T01:intron 50.0%
AAATAGTACTCCCTCCGTCC+CGG + Chr3:71307071-71307090 MsG0380015518.01.T01:intron 50.0%
AACAGAGGAAGCCTATCGCA+TGG + Chr3:71310822-71310841 MsG0380015518.01.T01:CDS 50.0%
AACCGGCGGTACTCTTTATC+CGG - Chr3:71306752-71306771 None:intergenic 50.0%
ACCATATGGGGTCCTCCAAT+TGG + Chr3:71309086-71309105 MsG0380015518.01.T01:intron 50.0%
CAACAACACCGTTCAAGAGG+TGG + Chr3:71306568-71306587 MsG0380015518.01.T01:CDS 50.0%
CCATATGGGGTCCTCCAATT+GGG + Chr3:71309087-71309106 MsG0380015518.01.T01:intron 50.0%
CTATAGTACTCCCTCCGTTC+CGG - Chr3:71307297-71307316 None:intergenic 50.0%
GAATCGAAACTGAGACCTCG+AGG + Chr3:71307823-71307842 MsG0380015518.01.T01:intron 50.0%
GCCAGTTACCCACCAAAGAT+AGG - Chr3:71310639-71310658 None:intergenic 50.0%
GGCAAACAAGGCGGTAGAAT+CGG + Chr3:71307621-71307640 MsG0380015518.01.T01:intron 50.0%
GTCAATTATACCGGGACGGA+GGG - Chr3:71307084-71307103 None:intergenic 50.0%
GTCAGTTATTCCGGAACGGA+GGG + Chr3:71307284-71307303 MsG0380015518.01.T01:intron 50.0%
GTCCAACAACACCGTTCAAG+AGG + Chr3:71306565-71306584 MsG0380015518.01.T01:CDS 50.0%
GTTTAGTGGAAGGTGGGTGA+AGG + Chr3:71306646-71306665 MsG0380015518.01.T01:CDS 50.0%
TCTCACTGTCTTCACAGCCA+AGG + Chr3:71309829-71309848 MsG0380015518.01.T01:CDS 50.0%
TGTTGGGGACTCCCTCAATA+GGG + Chr3:71309730-71309749 MsG0380015518.01.T01:CDS 50.0%
TTGTTGGGGACTCCCTCAAT+AGG + Chr3:71309729-71309748 MsG0380015518.01.T01:CDS 50.0%
! ACGGTCCCTCAGAACTTTTG+AGG - Chr3:71308714-71308733 None:intergenic 50.0%
! AGAGGAAGTCATGGGTGTTG+AGG - Chr3:71306469-71306488 None:intergenic 50.0%
! GGGTGAAGGATGAGTTGACT+AGG + Chr3:71306660-71306679 MsG0380015518.01.T01:CDS 50.0%
!! ATAAAGAGTACCGCCGGTTG+CGG + Chr3:71306753-71306772 MsG0380015518.01.T01:CDS 50.0%
!! ATGGGTGTTGAGGATGATGG+CGG - Chr3:71306459-71306478 None:intergenic 50.0%
!! CACCTCTTGAACGGTGTTGT+TGG - Chr3:71306570-71306589 None:intergenic 50.0%
!! GTCATGGGTGTTGAGGATGA+TGG - Chr3:71306462-71306481 None:intergenic 50.0%
!!! AGTGTTTTGGGGTCCATGCA+TGG + Chr3:71306343-71306362 MsG0380015518.01.T01:exon 50.0%
!!! CAGTTTTGGGGTGGAGTTGT+TGG - Chr3:71306511-71306530 None:intergenic 50.0%
!!! TTTTGGGGTGGAGTTGTTGG+AGG - Chr3:71306508-71306527 None:intergenic 50.0%
AAACCACGGACGGAGCTAGA+AGG - Chr3:71308753-71308772 None:intergenic 55.0%
AAACTCGGATTCCCTGCCGT+CGG + Chr3:71310958-71310977 MsG0380015518.01.T01:CDS 55.0%
ACCAGCATGTCGCCTTCTCA+TGG + Chr3:71310912-71310931 MsG0380015518.01.T01:CDS 55.0%
ACGGGTCAAGTTAACGGTGG+TGG + Chr3:71306858-71306877 MsG0380015518.01.T01:intron 55.0%
AGGAGGATGAGCAGTGGTCA+CGG - Chr3:71308733-71308752 None:intergenic 55.0%
CCCAATTGGAGGACCCCATA+TGG - Chr3:71309090-71309109 None:intergenic 55.0%
CGGGTCAAGTTAACGGTGGT+GGG + Chr3:71306859-71306878 MsG0380015518.01.T01:intron 55.0%
GCTAGAAGGAGGATGAGCAG+TGG - Chr3:71308739-71308758 None:intergenic 55.0%
GGTCAATTATACCGGGACGG+AGG - Chr3:71307085-71307104 None:intergenic 55.0%
GGTCAGTTATTCCGGAACGG+AGG + Chr3:71307283-71307302 MsG0380015518.01.T01:intron 55.0%
GGTGTGGACGGAAGATGAAG+AGG - Chr3:71306487-71306506 None:intergenic 55.0%
GTTGGGGACTCCCTCAATAG+GGG + Chr3:71309731-71309750 MsG0380015518.01.T01:CDS 55.0%
TCCATGAGAAGGCGACATGC+TGG - Chr3:71310916-71310935 None:intergenic 55.0%
TCGAAACTGAGACCTCGAGG+TGG + Chr3:71307826-71307845 MsG0380015518.01.T01:intron 55.0%
TTGGGAAGATCGCAACCGTG+AGG - Chr3:71306785-71306804 None:intergenic 55.0%
TTGTCAAGAACATGGCCGGC+CGG + Chr3:71306730-71306749 MsG0380015518.01.T01:CDS 55.0%
! GATGGCGGTGAAGAGGATGA+TGG - Chr3:71306444-71306463 None:intergenic 55.0%
! GGAGTTGTTGGAGGTGTGGA+CGG - Chr3:71306499-71306518 None:intergenic 55.0%
!! TGAGGATGATGGCGGTGAAG+AGG - Chr3:71306451-71306470 None:intergenic 55.0%
AACTCGGATTCCCTGCCGTC+GGG + Chr3:71310959-71310978 MsG0380015518.01.T01:CDS 60.0%
CTAGCTCCGTCCGTGGTTTG+AGG + Chr3:71308754-71308773 MsG0380015518.01.T01:intron 60.0%
GGCGGTACTCTTTATCCGGC+CGG - Chr3:71306748-71306767 None:intergenic 60.0%
GGGTGGAGTTGTTGGAGGTG+TGG - Chr3:71306503-71306522 None:intergenic 60.0%
TGAAAGCGGGGAATCCCCGA+CGG - Chr3:71310977-71310996 None:intergenic 60.0%
! TGGGAGTATGCTCCACCTCG+AGG - Chr3:71307841-71307860 None:intergenic 60.0%
!! GGCCGGATAAAGAGTACCGC+CGG + Chr3:71306747-71306766 MsG0380015518.01.T01:CDS 60.0%
ACTCGGATTCCCTGCCGTCG+GGG + Chr3:71310960-71310979 MsG0380015518.01.T01:CDS 65.0%
CCACGGACGGAGCTAGAAGG+AGG - Chr3:71308750-71308769 None:intergenic 65.0%
!! AAGAGTACCGCCGGTTGCGG+TGG + Chr3:71306756-71306775 MsG0380015518.01.T01:CDS 65.0%
!! CCTCCTTCTAGCTCCGTCCG+TGG + Chr3:71308747-71308766 MsG0380015518.01.T01:intron 65.0%
CGGTTGCGGTGGCAGCCTCA+CGG + Chr3:71306767-71306786 MsG0380015518.01.T01:CDS 70.0%
CGTGAGGCTGCCACCGCAAC+CGG - Chr3:71306769-71306788 None:intergenic 70.0%
AGCGGGGAATCCCCGACGGC+AGG - Chr3:71310973-71310992 None:intergenic 75.0%
GAGGCTGCCACCGCAACCGG+CGG - Chr3:71306766-71306785 None:intergenic 75.0%
GCGGGGAATCCCCGACGGCA+GGG - Chr3:71310972-71310991 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 71306250 71311071 71306250 ID=MsG0380015518.01;Name=MsG0380015518.01
Chr3 mRNA 71306250 71311071 71306250 ID=MsG0380015518.01.T01;Parent=MsG0380015518.01;Name=MsG0380015518.01.T01;_AED=0.51;_eAED=0.56;_QI=112|0.5|0.66|1|0.5|0.66|3|0|312
Chr3 exon 71306250 71306804 71306250 ID=MsG0380015518.01.T01:exon:536;Parent=MsG0380015518.01.T01
Chr3 exon 71309679 71309850 71309679 ID=MsG0380015518.01.T01:exon:537;Parent=MsG0380015518.01.T01
Chr3 exon 71310748 71311071 71310748 ID=MsG0380015518.01.T01:exon:538;Parent=MsG0380015518.01.T01
Chr3 five_prime_UTR 71306250 71306361 71306250 ID=MsG0380015518.01.T01:five_prime_utr;Parent=MsG0380015518.01.T01
Chr3 CDS 71306362 71306804 71306362 ID=MsG0380015518.01.T01:cds;Parent=MsG0380015518.01.T01
Chr3 CDS 71309679 71309850 71309679 ID=MsG0380015518.01.T01:cds;Parent=MsG0380015518.01.T01
Chr3 CDS 71310748 71311071 71310748 ID=MsG0380015518.01.T01:cds;Parent=MsG0380015518.01.T01
Gene Sequence

>MsG0380015518.01.T01

ATGGCAAACTCATTCAACCCTTCTTCTCTTCTTCTCAGAACAAAGCCTCGTCTTTCTTCCTATCTCTTCACCCTCTTATCCATCATCCTCTTCACCGCCATCATCCTCAACACCCATGACTTCCTCTTCATCTTCCGTCCACACCTCCAACAACTCCACCCCAAAACTGAAACCAACACTGTACTCTTTTCAACGGTGACTCAGTCCAACAACACCGTTCAAGAGGTGGAGAAAAAGGAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAAGAGTGTGACTTGTTTAGTGGAAGGTGGGTGAAGGATGAGTTGACTAGGCCATTGTATGAGGAATCTGAGTGTCCTTATATACAGCCACAGTTGACTTGTCAAGAACATGGCCGGCCGGATAAAGAGTACCGCCGGTTGCGGTGGCAGCCTCACGGTTGCGATCTTCCCAAATTCAATGCCAGTTTAATGCTAGAAACACTTCGTGGGAAGAGGATGATGTTTGTTGGGGACTCCCTCAATAGGGGTCAGTATGTGTCTTTGATATGCCTTCTCCATCATCTTATTCCCCAACATGCCAAATCTATGGAAACCTTTGATTCTCTCACTGTCTTCACAGCCAAGCCCCTAATAATCTCTACTCAAATTTTCAGGCTTGGTTCTTTCAAGGATGAAGTAAAAGAGATTGTTGAGATGCAAACAGAGGAAGCCTATCGCATGGCTATGAAAAGTATGCTTAGATGGGTGAAAAATGACACATGGATTCCAACAAGACTAGAGTCTTCTTCACCAGCATGTCGCCTTCTCATGGAAAGTGAGTATACTATAATTCACAAACTCGGATTCCCTGCCGTCGGGGATTCCCCGCTTTCATGCATTAAAAATATATGTGGCCGTTCGATTAAAGATAAAACAATCAAGATTCAAGTCCAGATTTTTCAATTATAA
Protein sequence

>MsG0380015518.01.T01

MANSFNPSSLLLRTKPRLSSYLFTLLSIILFTAIILNTHDFLFIFRPHLQQLHPKTETNTVLFSTVTQSNNTVQEVEKKEQEEEEEEEEEKECDLFSGRWVKDELTRPLYEESECPYIQPQLTCQEHGRPDKEYRRLRWQPHGCDLPKFNASLMLETLRGKRMMFVGDSLNRGQYVSLICLLHHLIPQHAKSMETFDSLTVFTAKPLIISTQIFRLGSFKDEVKEIVEMQTEEAYRMAMKSMLRWVKNDTWIPTRLESSSPACRLLMESEYTIIHKLGFPAVGDSPLSCIKNICGRSIKDKTIKIQVQIFQL*