AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016054.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016054.01.T01 MTR_3g082650 89.267 382 11 2 1 382 1 352 0.0 634
MsG0380016054.01.T01 MTR_6g004810 57.872 235 67 3 11 245 38 240 9.38e-83 258
MsG0380016054.01.T01 MTR_3g055990 34.835 333 152 12 18 321 6 302 2.17e-43 157
MsG0380016054.01.T01 MTR_3g055990 34.835 333 152 12 18 321 6 302 2.24e-43 157
MsG0380016054.01.T01 MTR_5g097580 36.533 323 149 13 18 317 6 295 8.21e-43 155
MsG0380016054.01.T01 MTR_2g026180 35.294 272 111 8 17 268 3 229 1.27e-42 155
MsG0380016054.01.T01 MTR_2g026180 44.000 100 52 2 3 98 88 187 3.27e-19 89.4
MsG0380016054.01.T01 MTR_5g097580 35.913 323 151 12 18 317 6 295 1.31e-42 155
MsG0380016054.01.T01 MTR_1g073690 35.000 180 98 2 18 179 6 184 9.33e-39 144
MsG0380016054.01.T01 MTR_1g073690 53.086 81 37 1 19 98 113 193 2.98e-21 95.5
MsG0380016054.01.T01 MTR_3g103420 34.254 181 99 2 18 179 10 189 4.80e-33 127
MsG0380016054.01.T01 MTR_5g017280 32.237 152 103 0 19 170 5 156 3.53e-28 114
MsG0380016054.01.T01 MTR_5g017280 27.895 190 92 2 19 163 93 282 3.47e-15 76.6
MsG0380016054.01.T01 MTR_5g017280 32.237 152 103 0 19 170 5 156 4.62e-28 114
MsG0380016054.01.T01 MTR_5g017280 27.895 190 92 2 19 163 93 282 3.79e-15 76.6
MsG0380016054.01.T01 MTR_2g026180 44.000 100 52 2 3 98 18 117 1.01e-19 90.5
MsG0380016054.01.T01 MTR_2g026180 31.034 203 75 8 86 268 2 159 2.09e-15 77.4
MsG0380016054.01.T01 MTR_4g088010 31.176 170 107 4 19 185 77 239 5.33e-19 87.8
MsG0380016054.01.T01 MTR_4g104470 28.758 153 103 2 19 165 123 275 1.41e-16 80.1
MsG0380016054.01.T01 MTR_8g463890 27.485 171 117 3 19 185 74 241 7.78e-16 79.0
MsG0380016054.01.T01 MTR_4g122650 30.256 195 107 6 9 183 71 256 3.47e-15 77.8
MsG0380016054.01.T01 MTR_7g107580 26.744 172 106 5 19 180 17 178 9.04e-13 69.7
MsG0380016054.01.T01 MTR_7g107580 26.744 172 106 5 19 180 17 178 1.06e-12 68.9
MsG0380016054.01.T01 MTR_7g107580 26.163 172 108 4 19 180 17 179 2.24e-12 68.6
MsG0380016054.01.T01 MTR_3g027140 24.309 181 120 3 13 179 55 232 3.28e-12 66.2
MsG0380016054.01.T01 MTR_4g070190 50.847 59 29 0 19 77 9 67 5.84e-12 63.9
MsG0380016054.01.T01 MTR_4g070080 49.153 59 30 0 19 77 7 65 5.87e-12 62.8
MsG0380016054.01.T01 MTR_4g070080 49.153 59 30 0 19 77 7 65 1.36e-11 62.8
MsG0380016054.01.T01 MTR_8g024520 40.909 66 39 0 19 84 26 91 1.42e-11 65.1
MsG0380016054.01.T01 MTR_8g024520 40.909 66 39 0 19 84 26 91 1.45e-11 65.1
MsG0380016054.01.T01 MTR_7g117495 42.188 64 37 0 19 82 19 82 1.71e-11 64.3
MsG0380016054.01.T01 MTR_7g117495 42.188 64 37 0 19 82 19 82 2.11e-11 63.9
MsG0380016054.01.T01 MTR_4g070140 45.000 60 33 0 19 78 9 68 2.73e-11 62.8
MsG0380016054.01.T01 MTR_4g035310 40.909 66 39 0 19 84 17 82 2.78e-11 63.9
MsG0380016054.01.T01 MTR_3g116130 37.879 66 41 0 19 84 30 95 3.04e-11 63.9
MsG0380016054.01.T01 MTR_4g035310 40.909 66 39 0 19 84 17 82 3.24e-11 63.9
MsG0380016054.01.T01 MTR_7g118120 29.932 147 91 5 18 161 104 241 3.62e-11 64.7
MsG0380016054.01.T01 MTR_5g088220 25.000 160 112 2 19 170 166 325 6.38e-11 64.3
MsG0380016054.01.T01 MTR_3g116130 37.879 66 41 0 19 84 30 95 8.58e-11 63.2
MsG0380016054.01.T01 MTR_3g075500 24.277 173 120 3 18 179 109 281 9.07e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016054.01.T01 AT3G13224 54.386 399 124 11 1 382 1 358 6.68e-94 285
MsG0380016054.01.T01 AT3G13224 72.527 182 47 2 1 179 1 182 2.08e-88 267
MsG0380016054.01.T01 AT3G13224 53.684 380 119 10 19 382 11 349 3.21e-87 268
MsG0380016054.01.T01 AT5G40490 58.590 227 60 5 8 231 31 226 1.78e-74 238
MsG0380016054.01.T01 AT5G40490 56.132 212 60 4 22 231 29 209 1.26e-66 217
MsG0380016054.01.T01 AT1G17640 45.070 213 85 2 17 226 65 248 5.25e-60 198
MsG0380016054.01.T01 AT1G17640 45.070 213 85 2 17 226 65 248 5.25e-60 198
MsG0380016054.01.T01 AT1G17640 45.070 213 85 2 17 226 65 248 5.25e-60 198
MsG0380016054.01.T01 AT5G55550 37.143 280 115 7 18 275 6 246 7.46e-43 155
MsG0380016054.01.T01 AT5G55550 43.878 98 54 1 9 105 101 198 9.06e-19 87.8
MsG0380016054.01.T01 AT5G55550 37.143 280 115 7 18 275 6 246 7.46e-43 155
MsG0380016054.01.T01 AT5G55550 43.878 98 54 1 9 105 101 198 9.06e-19 87.8
MsG0380016054.01.T01 AT5G55550 37.143 280 115 7 18 275 6 246 7.46e-43 155
MsG0380016054.01.T01 AT5G55550 43.878 98 54 1 9 105 101 198 9.06e-19 87.8
MsG0380016054.01.T01 AT5G55550 37.143 280 115 7 18 275 6 246 7.46e-43 155
MsG0380016054.01.T01 AT5G55550 43.878 98 54 1 9 105 101 198 9.06e-19 87.8
MsG0380016054.01.T01 AT5G55550 37.143 280 115 7 18 275 6 246 7.46e-43 155
MsG0380016054.01.T01 AT5G55550 43.878 98 54 1 9 105 101 198 9.06e-19 87.8
MsG0380016054.01.T01 AT5G55550 36.429 280 117 6 18 275 6 246 1.97e-42 154
MsG0380016054.01.T01 AT5G55550 43.878 98 54 1 9 105 101 198 1.34e-18 87.4
MsG0380016054.01.T01 AT5G55550 36.429 280 117 6 18 275 6 246 1.97e-42 154
MsG0380016054.01.T01 AT5G55550 43.878 98 54 1 9 105 101 198 1.34e-18 87.4
MsG0380016054.01.T01 AT5G55550 36.429 280 117 6 18 275 6 246 1.97e-42 154
MsG0380016054.01.T01 AT5G55550 43.878 98 54 1 9 105 101 198 1.34e-18 87.4
MsG0380016054.01.T01 AT5G55550 36.429 280 117 6 18 275 6 246 1.97e-42 154
MsG0380016054.01.T01 AT5G55550 43.878 98 54 1 9 105 101 198 1.34e-18 87.4
MsG0380016054.01.T01 AT4G26650 37.885 227 116 5 18 225 12 232 9.27e-42 152
MsG0380016054.01.T01 AT4G26650 44.444 99 54 1 11 108 112 210 7.18e-19 88.2
MsG0380016054.01.T01 AT4G26650 37.885 227 116 5 18 225 15 235 9.47e-42 152
MsG0380016054.01.T01 AT4G26650 44.444 99 54 1 11 108 115 213 6.95e-19 88.2
MsG0380016054.01.T01 AT4G14300 38.764 178 92 2 18 179 6 182 2.02e-40 148
MsG0380016054.01.T01 AT4G14300 49.383 81 40 1 19 98 111 191 3.82e-18 85.9
MsG0380016054.01.T01 AT4G14300 38.764 178 92 2 18 179 6 182 2.02e-40 148
MsG0380016054.01.T01 AT4G14300 49.383 81 40 1 19 98 111 191 3.82e-18 85.9
MsG0380016054.01.T01 AT2G33410 39.888 178 90 3 18 179 6 182 6.76e-40 146
MsG0380016054.01.T01 AT2G33410 46.939 98 48 2 2 98 97 191 9.22e-19 87.8
MsG0380016054.01.T01 AT3G07810 38.857 175 87 3 18 172 6 180 2.09e-38 144
MsG0380016054.01.T01 AT3G07810 38.857 175 87 3 18 172 6 180 2.19e-38 144
MsG0380016054.01.T01 AT5G47620 38.953 172 87 3 19 172 7 178 5.07e-36 136
MsG0380016054.01.T01 AT5G47620 38.953 172 87 3 19 172 7 178 5.07e-36 136
MsG0380016054.01.T01 AT5G47620 38.953 172 87 3 19 172 7 178 5.07e-36 136
MsG0380016054.01.T01 AT5G55550 30.663 362 140 9 18 309 6 326 4.74e-35 135
MsG0380016054.01.T01 AT5G55550 43.878 98 54 1 9 105 148 245 1.53e-18 87.4
MsG0380016054.01.T01 AT5G55550 30.663 362 140 9 18 309 6 326 6.58e-35 134
MsG0380016054.01.T01 AT5G55550 43.878 98 54 1 9 105 148 245 1.96e-18 87.4
MsG0380016054.01.T01 AT5G47620 34.536 194 87 4 19 172 7 200 4.13e-31 123
MsG0380016054.01.T01 AT5G47620 29.054 148 82 3 102 239 2 136 9.14e-11 63.5
MsG0380016054.01.T01 AT1G58470 28.137 263 119 4 19 255 7 225 1.07e-27 112
MsG0380016054.01.T01 AT1G58470 28.137 263 119 4 19 255 7 225 1.07e-27 112
MsG0380016054.01.T01 AT4G36960 31.677 161 108 1 19 179 4 162 6.74e-27 110
MsG0380016054.01.T01 AT4G36960 31.677 161 108 1 19 179 4 162 6.74e-27 110
MsG0380016054.01.T01 AT5G47620 45.455 99 45 2 19 108 47 145 1.71e-19 89.4
MsG0380016054.01.T01 AT5G47620 31.356 118 62 4 74 172 1 118 8.97e-13 69.3
MsG0380016054.01.T01 AT3G15010 30.409 171 112 3 19 185 76 243 5.32e-18 85.5
MsG0380016054.01.T01 AT3G15010 30.409 171 112 3 19 185 76 243 5.32e-18 85.5
MsG0380016054.01.T01 AT5G50250 28.571 154 104 2 18 165 113 266 8.31e-17 80.5
MsG0380016054.01.T01 AT4G24770 29.167 168 107 5 2 163 137 298 1.60e-16 80.1
MsG0380016054.01.T01 AT4G24770 29.167 168 107 5 2 163 137 298 1.60e-16 80.1
MsG0380016054.01.T01 AT4G00830 33.333 156 90 6 19 171 117 261 3.95e-15 77.0
MsG0380016054.01.T01 AT4G00830 33.333 156 90 6 19 171 117 261 3.95e-15 77.0
MsG0380016054.01.T01 AT4G00830 33.333 156 90 6 19 171 117 261 3.95e-15 77.0
MsG0380016054.01.T01 AT4G00830 32.258 155 93 5 19 171 117 261 8.09e-15 76.3
MsG0380016054.01.T01 AT5G04280 43.038 79 43 1 19 95 8 86 1.55e-14 74.3
MsG0380016054.01.T01 AT3G52150 26.702 191 119 5 7 179 63 250 2.48e-13 69.7
MsG0380016054.01.T01 AT3G52150 26.702 191 119 5 7 179 63 250 2.48e-13 69.7
MsG0380016054.01.T01 AT1G60650 41.379 87 49 1 11 95 5 91 4.33e-13 69.7
MsG0380016054.01.T01 AT1G60650 41.379 87 49 1 11 95 5 91 4.33e-13 69.7
MsG0380016054.01.T01 AT1G03457 26.512 215 132 7 19 223 13 211 5.90e-13 70.5
MsG0380016054.01.T01 AT4G16280 26.689 296 169 12 13 288 115 382 9.46e-13 70.1
MsG0380016054.01.T01 AT4G16280 26.689 296 169 12 13 288 115 382 9.90e-13 69.7
MsG0380016054.01.T01 AT4G16280 26.599 297 170 12 12 288 39 307 1.14e-12 70.1
MsG0380016054.01.T01 AT2G46780 40.909 66 39 0 19 84 23 88 2.25e-12 67.8
MsG0380016054.01.T01 AT2G46780 40.909 66 39 0 19 84 23 88 2.25e-12 67.8
MsG0380016054.01.T01 AT4G03110 26.163 172 107 5 19 180 19 180 3.13e-12 68.2
MsG0380016054.01.T01 AT3G56860 27.811 169 97 2 19 166 141 305 4.22e-12 67.8
MsG0380016054.01.T01 AT3G56860 27.811 169 97 2 19 166 141 305 4.22e-12 67.8
MsG0380016054.01.T01 AT3G56860 27.811 169 97 2 19 166 141 305 4.22e-12 67.8
MsG0380016054.01.T01 AT3G56860 27.811 169 97 2 19 166 141 305 4.22e-12 67.8
MsG0380016054.01.T01 AT3G56860 27.811 169 97 2 19 166 141 305 4.22e-12 67.8
MsG0380016054.01.T01 AT3G56860 27.811 169 97 2 19 166 141 305 4.22e-12 67.8
MsG0380016054.01.T01 AT3G56860 27.811 169 97 2 19 166 141 305 4.22e-12 67.8
MsG0380016054.01.T01 AT3G56860 27.811 169 97 2 19 166 141 305 4.22e-12 67.8
MsG0380016054.01.T01 AT3G56860 27.811 169 97 2 19 166 141 305 4.22e-12 67.8
MsG0380016054.01.T01 AT3G56860 27.811 169 97 2 19 166 141 305 4.22e-12 67.8
MsG0380016054.01.T01 AT3G56860 27.811 169 97 2 19 166 141 305 4.22e-12 67.8
MsG0380016054.01.T01 AT3G26420 36.986 73 46 0 107 179 8 80 5.88e-12 65.5
MsG0380016054.01.T01 AT4G03110 26.163 172 107 5 19 180 19 180 7.58e-12 67.0
MsG0380016054.01.T01 AT4G03110 26.163 172 107 5 19 180 19 180 8.31e-12 66.6
MsG0380016054.01.T01 AT1G03457 25.446 224 132 7 19 223 13 220 8.42e-12 66.6
MsG0380016054.01.T01 AT4G00830 30.000 160 82 6 19 171 117 253 9.03e-12 67.0
MsG0380016054.01.T01 AT4G00830 30.000 160 82 6 19 171 117 253 9.03e-12 67.0
MsG0380016054.01.T01 AT1G76460 40.909 66 39 0 19 84 25 90 1.19e-11 65.5
MsG0380016054.01.T01 AT1G71770 25.521 192 118 7 4 177 223 407 3.96e-11 65.1
MsG0380016054.01.T01 AT1G71770 25.521 192 118 7 4 177 223 407 3.96e-11 65.1
MsG0380016054.01.T01 AT1G11650 26.404 178 107 3 20 179 157 328 7.27e-11 63.9
MsG0380016054.01.T01 AT4G39260 36.585 82 48 2 19 100 7 84 8.61e-11 58.5

Find 159 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCATTTGGTAATGATTCT+AGG 0.151133 3:+78474516 MsG0380016054.01.T01:CDS
GTGAGGGTTATCGGACTTTC+TGG 0.192489 3:-78473128 None:intergenic
ACCGGTCGTCCTCGAGGATT+TGG 0.205607 3:+78473458 MsG0380016054.01.T01:CDS
TTAGTTTGGTTTGTTTATTT+AGG 0.208597 3:+78474136 MsG0380016054.01.T01:CDS
ATATCTAACTAAACTCTTAT+AGG 0.216249 3:-78475191 None:intergenic
CGTTCTTACAATGGCGGTTT+TGG 0.224937 3:+78474542 MsG0380016054.01.T01:CDS
TAGTTTGGTTTGTTTATTTA+GGG 0.230662 3:+78474137 MsG0380016054.01.T01:CDS
GATACCTAGGGTTGTATCTT+TGG 0.238318 3:-78473285 None:intergenic
TCTGGCCCTGGTGCTGGTTT+TGG 0.239203 3:+78474902 MsG0380016054.01.T01:CDS
TGTTGTTGATCAAGTTATTC+AGG 0.257520 3:+78473505 MsG0380016054.01.T01:CDS
TATAGGTCGCTTGGAGGTTT+TGG 0.267096 3:+78474620 MsG0380016054.01.T01:CDS
GAACATAGGTTAGTGGAAAT+TGG 0.269531 3:+78474192 MsG0380016054.01.T01:CDS
GGTGGTAGGTTTAGCGATTA+TGG 0.272361 3:+78474641 MsG0380016054.01.T01:CDS
GATGAATTTGAAGATTTCTT+TGG 0.276198 3:-78474485 None:intergenic
GGCCCATATGGGAGAGGTGG+TGG 0.277336 3:+78474833 MsG0380016054.01.T01:CDS
GATGATTTCAGTGGTGGTTT+TGG 0.287960 3:+78474680 MsG0380016054.01.T01:CDS
GGATATGGTGGTGGTGGGTT+AGG 0.316266 3:+78474812 MsG0380016054.01.T01:CDS
TCCGGCGACGGCGCCAGTCC+CGG 0.317544 3:+78473151 MsG0380016054.01.T01:CDS
CCCATATGGGAGAGGTGGTG+GGG 0.320586 3:+78474835 MsG0380016054.01.T01:CDS
TATTCTAGTAGGGGAGGTTA+TGG 0.322189 3:+78474941 MsG0380016054.01.T01:CDS
GGTGGATTTGACGATTCTTA+TGG 0.325447 3:+78474563 MsG0380016054.01.T01:CDS
GGTGGTGGGTTAGGCCCATA+TGG 0.328329 3:+78474821 MsG0380016054.01.T01:CDS
AAGTTAGACTATCGCCATTA+TGG 0.332825 3:+78475240 MsG0380016054.01.T01:three_prime_UTR
AGGGTGTTTAAAATTGAAAC+TGG 0.340303 3:+78474156 MsG0380016054.01.T01:CDS
ACTAAGCGTTCCCGTGGATT+TGG 0.349095 3:+78474033 MsG0380016054.01.T01:CDS
GGATGGTACTCAGGTTAGTT+TGG 0.357553 3:+78474122 MsG0380016054.01.T01:CDS
ATTCTAGTAGGGGAGGTTAT+GGG 0.359170 3:+78474942 MsG0380016054.01.T01:CDS
GGCCTTGGTGGTGGATATGG+TGG 0.362798 3:+78474800 MsG0380016054.01.T01:CDS
GTGAAGTACTTTGAAAGGTA+TGG 0.367146 3:+78473398 MsG0380016054.01.T01:CDS
CCGGTCGTCCTCGAGGATTT+GGG 0.373418 3:+78473459 MsG0380016054.01.T01:CDS
GTTATGGCCCTACATCTTAT+AGG 0.373426 3:+78474603 MsG0380016054.01.T01:CDS
CCGGCGACGGCGCCAGTCCC+GGG 0.373625 3:+78473152 MsG0380016054.01.T01:CDS
ATAACCTCCCCTACTAGAAT+AGG 0.380687 3:-78474939 None:intergenic
ACTAAAATTGACATCCATAA+TGG 0.381549 3:-78475254 None:intergenic
GTCGCCGGAGTGAGGGTTAT+CGG 0.392798 3:-78473137 None:intergenic
TATGGAGGCAGTGGTGGTGC+TGG 0.406140 3:+78474707 MsG0380016054.01.T01:CDS
CTTGGTGGTGGATATGGTGG+TGG 0.412985 3:+78474803 MsG0380016054.01.T01:CDS
TTAGTTTGAGATGCACCCTT+TGG 0.413443 3:-78473690 None:intergenic
GGTTATGGCGGTCCAGGCAC+TGG 0.414223 3:+78474866 MsG0380016054.01.T01:CDS
TATGGCGGTTATGGCGGTCC+AGG 0.416138 3:+78474860 MsG0380016054.01.T01:CDS
TGATGGGAACATGATTGATA+TGG 0.416351 3:+78474101 MsG0380016054.01.T01:CDS
TATGAATCTGGCCCTGGTGC+TGG 0.417018 3:+78474896 MsG0380016054.01.T01:CDS
GATTGATGAAGTTCTATCTT+CGG 0.421546 3:-78475124 None:intergenic
TTTGAGGAAGAAGCTTGCTT+AGG 0.425624 3:-78473043 None:intergenic
CTCAAAGCATGGGAATGTTA+TGG 0.425693 3:+78473984 MsG0380016054.01.T01:CDS
TGAAGTACTTTGAAAGGTAT+GGG 0.436031 3:+78473399 MsG0380016054.01.T01:CDS
CCCGGGACTGGCGCCGTCGC+CGG 0.436702 3:-78473152 None:intergenic
GCCCATATGGGAGAGGTGGT+GGG 0.438600 3:+78474834 MsG0380016054.01.T01:CDS
ACTGGTGGAGGTTATGAATC+TGG 0.439273 3:+78474884 MsG0380016054.01.T01:CDS
TTCATTTGGTAATGATTCTA+GGG 0.440332 3:+78474517 MsG0380016054.01.T01:CDS
CCATATGGGAGAGGTGGTGG+GGG 0.441700 3:+78474836 MsG0380016054.01.T01:CDS
CACGGGAACGCTTAGTGGTA+TGG 0.442562 3:-78474026 None:intergenic
TTCGGTTACTCTGGCCGCTA+TGG 0.446589 3:+78474764 MsG0380016054.01.T01:CDS
GAAGAGAGCGAACCCGGGAC+TGG 0.447616 3:-78473164 None:intergenic
GGTGGTGCTGGTGGTTATGC+GGG 0.451484 3:+78474719 MsG0380016054.01.T01:CDS
GTGTGAATGTGTACTATTGT+AGG 0.451839 3:+78475292 MsG0380016054.01.T01:three_prime_UTR
TTTGGAGGTTATGGAGGCAG+TGG 0.453260 3:+78474698 MsG0380016054.01.T01:CDS
GGTGGTGGATATGGTGGTGG+TGG 0.458107 3:+78474806 MsG0380016054.01.T01:CDS
CCCCACCACCTCTCCCATAT+GGG 0.460579 3:-78474835 None:intergenic
CAGGAGGACCCTATTCTAGT+AGG 0.461637 3:+78474930 MsG0380016054.01.T01:CDS
CCCAAATCCTCGAGGACGAC+CGG 0.461844 3:-78473459 None:intergenic
AAATCCACGGGAACGCTTAG+TGG 0.462420 3:-78474031 None:intergenic
GTGGTGGATATGGTGGTGGT+GGG 0.463417 3:+78474807 MsG0380016054.01.T01:CDS
TTGAGGAAGAAGCTTGCTTA+GGG 0.466779 3:-78473042 None:intergenic
TCATAAAACTATCTTGTGTA+AGG 0.471625 3:-78474983 None:intergenic
TAACCTCCCCTACTAGAATA+GGG 0.473608 3:-78474938 None:intergenic
GGCCGCTATGGATCCTACAT+GGG 0.474978 3:+78474776 MsG0380016054.01.T01:CDS
AAACCTTCAGATACAATTGC+TGG 0.478443 3:-78473750 None:intergenic
GGCGGTCCAGGCACTGGTGG+AGG 0.484588 3:+78474872 MsG0380016054.01.T01:CDS
TTTAGCGATTATGGTGGGTA+TGG 0.487404 3:+78474650 MsG0380016054.01.T01:CDS
GTTGATAATTTGTTAGCTGA+TGG 0.487526 3:+78474084 MsG0380016054.01.T01:CDS
GGTGGTTATGCGGGCTATAG+AGG 0.488404 3:+78474728 MsG0380016054.01.T01:CDS
CTGGCGCCGTCGCCGGAGTG+AGG 0.489242 3:-78473145 None:intergenic
TGGCCGCTATGGATCCTACA+TGG 0.493274 3:+78474775 MsG0380016054.01.T01:CDS
TCATAACCTCCACCAGTGCC+TGG 0.495641 3:-78474878 None:intergenic
AAGAACTTCTTCTCAAAGCA+TGG 0.497829 3:+78473973 MsG0380016054.01.T01:CDS
CCAAGCGACCTATAAGATGT+AGG 0.501589 3:-78474611 None:intergenic
TGGCGCCGTCGCCGGAGTGA+GGG 0.503462 3:-78473144 None:intergenic
ATCATGAAGGATCGACATAC+CGG 0.510399 3:+78473440 MsG0380016054.01.T01:CDS
CTAGAATCATTACCAAATGA+AGG 0.511533 3:-78474515 None:intergenic
TTGATAATTTGTTAGCTGAT+GGG 0.512546 3:+78474085 MsG0380016054.01.T01:CDS
TGGTGGTGCTGGTGGTTATG+CGG 0.514299 3:+78474718 MsG0380016054.01.T01:CDS
TCTTATAGGCTGATGACTGA+TGG 0.515000 3:-78475177 None:intergenic
GGAGGTTATGGAGGCAGTGG+TGG 0.517150 3:+78474701 MsG0380016054.01.T01:CDS
ATCGGACTTTCTGGAAGCCA+TGG 0.517401 3:-78473119 None:intergenic
ATCAAGAGGACTATTCCAAA+GGG 0.519300 3:+78473675 MsG0380016054.01.T01:CDS
GTCCCACCAAAACCAGCACC+AGG 0.522725 3:-78474908 None:intergenic
AGGAGGACCCTATTCTAGTA+GGG 0.525330 3:+78474931 MsG0380016054.01.T01:CDS
AAAACTATCTTGTGTAAGGA+TGG 0.527528 3:-78474979 None:intergenic
TACAAGGAACTTACTACAGG+TGG 0.532036 3:+78475055 MsG0380016054.01.T01:three_prime_UTR
GATTGATATGGATGGTACTC+AGG 0.532207 3:+78474113 MsG0380016054.01.T01:CDS
AACTGATTCCGTTATCATGA+AGG 0.535063 3:+78473427 MsG0380016054.01.T01:CDS
GGTGGAGATGATTTCAGTGG+TGG 0.538564 3:+78474674 MsG0380016054.01.T01:CDS
GCCGCTATGGATCCTACATG+GGG 0.538686 3:+78474777 MsG0380016054.01.T01:CDS
TACTGCTGAACATAGGTTAG+TGG 0.538720 3:+78474185 MsG0380016054.01.T01:CDS
GGAGGCAGTGGTGGTGCTGG+TGG 0.540901 3:+78474710 MsG0380016054.01.T01:CDS
AGAGGAGGAGAATCCTCATT+CGG 0.541881 3:+78474746 MsG0380016054.01.T01:CDS
ACATCTTATAGGTCGCTTGG+AGG 0.543240 3:+78474614 MsG0380016054.01.T01:CDS
ATGTCGATCCTTCATGATAA+CGG 0.543779 3:-78473435 None:intergenic
GGAGGTTATGAATCTGGCCC+TGG 0.544539 3:+78474890 MsG0380016054.01.T01:CDS
ATTCCAGCAATTGTATCTGA+AGG 0.545716 3:+78473747 MsG0380016054.01.T01:CDS
TTCTAGTAGGGGAGGTTATG+GGG 0.546191 3:+78474943 MsG0380016054.01.T01:CDS
GAATCCTCATTCGGTTACTC+TGG 0.546282 3:+78474755 MsG0380016054.01.T01:CDS
CAAGCGACCTATAAGATGTA+GGG 0.548725 3:-78474610 None:intergenic
CCTACATCTTATAGGTCGCT+TGG 0.550258 3:+78474611 MsG0380016054.01.T01:CDS
AGAACTTCTTCTCAAAGCAT+GGG 0.550482 3:+78473974 MsG0380016054.01.T01:CDS
AACTACAAAACCAAATCCAC+GGG 0.550513 3:-78474043 None:intergenic
TGGAAGCCATGGTTGAAGAT+CGG 0.550819 3:-78473108 None:intergenic
CTTATAGGCTGATGACTGAT+GGG 0.550920 3:-78475176 None:intergenic
TCACATCATCAATGACAAGC+AGG 0.551218 3:+78473532 MsG0380016054.01.T01:CDS
AGCGATTATGGTGGGTATGG+AGG 0.554528 3:+78474653 MsG0380016054.01.T01:CDS
TGACCTGAAACAGTGGGAAG+GGG 0.555087 3:-78473073 None:intergenic
GTGGTGGGTTAGGCCCATAT+GGG 0.555497 3:+78474822 MsG0380016054.01.T01:CDS
GTGACCTGAAACAGTGGGAA+GGG 0.556156 3:-78473074 None:intergenic
GGTAGGTTTAGCGATTATGG+TGG 0.558160 3:+78474644 MsG0380016054.01.T01:CDS
TCATGCAGGAAAATCTTCAT+CGG 0.559658 3:+78473254 MsG0380016054.01.T01:intron
GATAACCCTCACTCCGGCGA+CGG 0.564558 3:+78473139 MsG0380016054.01.T01:CDS
TTAGGCCCATATGGGAGAGG+TGG 0.567019 3:+78474830 MsG0380016054.01.T01:CDS
GGGTTAGGCCCATATGGGAG+AGG 0.567087 3:+78474827 MsG0380016054.01.T01:CDS
GCGGCCAGAGTAACCGAATG+AGG 0.570661 3:-78474759 None:intergenic
GTTGTAGGTTGAGATCAAGA+AGG 0.571670 3:+78474457 MsG0380016054.01.T01:intron
CGCTATGGATCCTACATGGG+GGG 0.574927 3:+78474779 MsG0380016054.01.T01:CDS
AGTTACAAGGAACTTACTAC+AGG 0.575896 3:+78475052 MsG0380016054.01.T01:three_prime_UTR
GATTATGGTGGGTATGGAGG+TGG 0.580479 3:+78474656 MsG0380016054.01.T01:CDS
AAACTACAAAACCAAATCCA+CGG 0.581859 3:-78474044 None:intergenic
TCTAGTAGGGGAGGTTATGG+GGG 0.582748 3:+78474944 MsG0380016054.01.T01:CDS
TGATTTGTGACCTGAAACAG+TGG 0.584225 3:-78473080 None:intergenic
TTGCAATAGAAATTGCATGC+AGG 0.584908 3:+78475013 MsG0380016054.01.T01:three_prime_UTR
ATTCATCCGATCTTCAACCA+TGG 0.588342 3:+78473102 MsG0380016054.01.T01:exon
CATATCAGGTTGAAATCAAG+AGG 0.589740 3:+78473661 MsG0380016054.01.T01:intron
TTGTCTAAGCGACATGCTAG+TGG 0.593623 3:-78475101 None:intergenic
GTAGGTTTAGCGATTATGGT+GGG 0.596984 3:+78474645 MsG0380016054.01.T01:CDS
TGCAGGAAAATCTTCATCGG+AGG 0.597403 3:+78473257 MsG0380016054.01.T01:intron
ATTTGGGTTTATCACTTATG+CGG 0.598016 3:+78473475 MsG0380016054.01.T01:CDS
TATGGCGGTCCAGGCACTGG+TGG 0.598509 3:+78474869 MsG0380016054.01.T01:CDS
TCTAGGGCACGTTCTTACAA+TGG 0.598638 3:+78474533 MsG0380016054.01.T01:CDS
GTAGGGCCATAACCTCCAGC+AGG 0.600122 3:-78474593 None:intergenic
AATCAAGAGGACTATTCCAA+AGG 0.601418 3:+78473674 MsG0380016054.01.T01:CDS
ATCAGCTAACAAATTATCAA+CGG 0.611456 3:-78474082 None:intergenic
AGGGCACGTTCTTACAATGG+CGG 0.614082 3:+78474536 MsG0380016054.01.T01:CDS
CGACATACCGGTCGTCCTCG+AGG 0.619903 3:+78473452 MsG0380016054.01.T01:CDS
TGTGACCTGAAACAGTGGGA+AGG 0.629208 3:-78473075 None:intergenic
GAAGTACTTTGAAAGGTATG+GGG 0.631008 3:+78473400 MsG0380016054.01.T01:CDS
GACCTGAAACAGTGGGAAGG+GGG 0.631085 3:-78473072 None:intergenic
GGACCCTATTCTAGTAGGGG+AGG 0.635400 3:+78474935 MsG0380016054.01.T01:CDS
GTGATGCTACTGCTGAACAT+AGG 0.637321 3:+78474178 MsG0380016054.01.T01:CDS
TTAGCCAAAGATACAACCCT+AGG 0.645736 3:+78473281 MsG0380016054.01.T01:CDS
CATACCACTAAGCGTTCCCG+TGG 0.650362 3:+78474027 MsG0380016054.01.T01:CDS
ACAAGGAACTTACTACAGGT+GGG 0.658986 3:+78475056 MsG0380016054.01.T01:three_prime_UTR
GGTTATGCGGGCTATAGAGG+AGG 0.660221 3:+78474731 MsG0380016054.01.T01:CDS
GGGAACATGATTGATATGGA+TGG 0.665118 3:+78474105 MsG0380016054.01.T01:CDS
AAGTCCGATAACCCTCACTC+CGG 0.666720 3:+78473133 MsG0380016054.01.T01:CDS
GGAGGACCCTATTCTAGTAG+GGG 0.666818 3:+78474932 MsG0380016054.01.T01:CDS
CCGCTATGGATCCTACATGG+GGG 0.674316 3:+78474778 MsG0380016054.01.T01:CDS
CACCACCATATCCACCACCA+AGG 0.678240 3:-78474802 None:intergenic
GGAGGTGGAGATGATTTCAG+TGG 0.679386 3:+78474671 MsG0380016054.01.T01:CDS
TCCCACCAAAACCAGCACCA+GGG 0.688176 3:-78474907 None:intergenic
GTGATAAACCCAAATCCTCG+AGG 0.709143 3:-78473467 None:intergenic
GATTTGTGACCTGAAACAGT+GGG 0.745795 3:-78473079 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAGTAATAATAATAATTG+CGG + Chr3:78474270-78474289 MsG0380016054.01.T01:intron 15.0%
!! ATATCTAACTAAACTCTTAT+AGG - Chr3:78475194-78475213 None:intergenic 20.0%
!! TTCTATTTATGAATGAATCT+AGG + Chr3:78474419-78474438 MsG0380016054.01.T01:intron 20.0%
!!! AAAACTAAGAAGATTTTTGT+TGG + Chr3:78473720-78473739 MsG0380016054.01.T01:CDS 20.0%
!!! ATTCAGTTGAATTTTTGATT+TGG + Chr3:78473592-78473611 MsG0380016054.01.T01:intron 20.0%
!!! TAGTTTGGTTTGTTTATTTA+GGG + Chr3:78474137-78474156 MsG0380016054.01.T01:CDS 20.0%
!!! TTAGTTTGGTTTGTTTATTT+AGG + Chr3:78474136-78474155 MsG0380016054.01.T01:CDS 20.0%
!!! TTCAGTTGAATTTTTGATTT+GGG + Chr3:78473593-78473612 MsG0380016054.01.T01:intron 20.0%
! ACTAAAATTGACATCCATAA+TGG - Chr3:78475257-78475276 None:intergenic 25.0%
! ATCAGCTAACAAATTATCAA+CGG - Chr3:78474085-78474104 None:intergenic 25.0%
! GAAAAATGAGAATAGTGAAA+AGG - Chr3:78473230-78473249 None:intergenic 25.0%
! GATGAATTTGAAGATTTCTT+TGG - Chr3:78474488-78474507 None:intergenic 25.0%
! TCATAAAACTATCTTGTGTA+AGG - Chr3:78474986-78475005 None:intergenic 25.0%
!!! TAAATAGAACCTTTTTTCCT+TGG - Chr3:78474408-78474427 None:intergenic 25.0%
!!! TTCATTTGGTAATGATTCTA+GGG + Chr3:78474517-78474536 MsG0380016054.01.T01:CDS 25.0%
!!! TTGATAATTTGTTAGCTGAT+GGG + Chr3:78474085-78474104 MsG0380016054.01.T01:CDS 25.0%
AAAACTATCTTGTGTAAGGA+TGG - Chr3:78474982-78475001 None:intergenic 30.0%
AAACTACAAAACCAAATCCA+CGG - Chr3:78474047-78474066 None:intergenic 30.0%
AATAGTGAAAAGGAGAAATC+GGG - Chr3:78473220-78473239 None:intergenic 30.0%
ACAAAGTGAAACCGTAATTA+GGG - Chr3:78473563-78473582 None:intergenic 30.0%
ATGAAAAGATGTTGATACCT+AGG - Chr3:78473301-78473320 None:intergenic 30.0%
CTAGAATCATTACCAAATGA+AGG - Chr3:78474518-78474537 None:intergenic 30.0%
GAATAGTGAAAAGGAGAAAT+CGG - Chr3:78473221-78473240 None:intergenic 30.0%
GATTGATGAAGTTCTATCTT+CGG - Chr3:78475127-78475146 None:intergenic 30.0%
TGAAAAGATGTTGATACCTA+GGG - Chr3:78473300-78473319 None:intergenic 30.0%
TGTTGTTGATCAAGTTATTC+AGG + Chr3:78473505-78473524 MsG0380016054.01.T01:CDS 30.0%
! AAGCATTTTCTCTAGTTACA+AGG + Chr3:78475039-78475058 MsG0380016054.01.T01:three_prime_UTR 30.0%
! ACTAAGAAGATTTTTGTTGG+TGG + Chr3:78473723-78473742 MsG0380016054.01.T01:CDS 30.0%
! AGGGTGTTTAAAATTGAAAC+TGG + Chr3:78474156-78474175 MsG0380016054.01.T01:CDS 30.0%
! ATTTGGGTTTATCACTTATG+CGG + Chr3:78473475-78473494 MsG0380016054.01.T01:CDS 30.0%
! TCATCTTCTTTTCCTTCATT+TGG + Chr3:78474503-78474522 MsG0380016054.01.T01:CDS 30.0%
! TGAAGTACTTTGAAAGGTAT+GGG + Chr3:78473399-78473418 MsG0380016054.01.T01:CDS 30.0%
!! CTTCATTTGGTAATGATTCT+AGG + Chr3:78474516-78474535 MsG0380016054.01.T01:CDS 30.0%
!! CTTTTGTGAAGTACTTTGAA+AGG + Chr3:78473393-78473412 MsG0380016054.01.T01:CDS 30.0%
!! GTTGATAATTTGTTAGCTGA+TGG + Chr3:78474084-78474103 MsG0380016054.01.T01:CDS 30.0%
!! TTGATTTGTCTGTTCATATC+AGG + Chr3:78473647-78473666 MsG0380016054.01.T01:intron 30.0%
!!! TGTAGTTTTTGATAGCGATA+AGG + Chr3:78474059-78474078 MsG0380016054.01.T01:CDS 30.0%
!!! TTTGTTTTCGAGTGAAAGTA+TGG + Chr3:78473891-78473910 MsG0380016054.01.T01:intron 30.0%
!!! TTTTTTCCTTGGTTTTGGTT+GGG - Chr3:78474397-78474416 None:intergenic 30.0%
AAACCTTCAGATACAATTGC+TGG - Chr3:78473753-78473772 None:intergenic 35.0%
AAAGTGAGACATCACATTGA+TGG - Chr3:78474310-78474329 None:intergenic 35.0%
AACTACAAAACCAAATCCAC+GGG - Chr3:78474046-78474065 None:intergenic 35.0%
AAGAACTTCTTCTCAAAGCA+TGG + Chr3:78473973-78473992 MsG0380016054.01.T01:CDS 35.0%
AAGTTAGACTATCGCCATTA+TGG + Chr3:78475240-78475259 MsG0380016054.01.T01:three_prime_UTR 35.0%
AATCAAGAGGACTATTCCAA+AGG + Chr3:78473674-78473693 MsG0380016054.01.T01:CDS 35.0%
AGAACTTCTTCTCAAAGCAT+GGG + Chr3:78473974-78473993 MsG0380016054.01.T01:CDS 35.0%
AGCAGGTAAAACCCTAATTA+CGG + Chr3:78473549-78473568 MsG0380016054.01.T01:intron 35.0%
AGCTTATTGTATGCTTGTCT+TGG + Chr3:78473929-78473948 MsG0380016054.01.T01:intron 35.0%
AGTTACAAGGAACTTACTAC+AGG + Chr3:78475052-78475071 MsG0380016054.01.T01:three_prime_UTR 35.0%
ATAGTGAAAAGGAGAAATCG+GGG - Chr3:78473219-78473238 None:intergenic 35.0%
ATCAAGAGGACTATTCCAAA+GGG + Chr3:78473675-78473694 MsG0380016054.01.T01:CDS 35.0%
ATGTCGATCCTTCATGATAA+CGG - Chr3:78473438-78473457 None:intergenic 35.0%
ATTCCAGCAATTGTATCTGA+AGG + Chr3:78473747-78473766 MsG0380016054.01.T01:CDS 35.0%
CAACCAAAACCAAGGAAAAA+AGG + Chr3:78474396-78474415 MsG0380016054.01.T01:intron 35.0%
CACAAAGTGAAACCGTAATT+AGG - Chr3:78473564-78473583 None:intergenic 35.0%
GAACATAGGTTAGTGGAAAT+TGG + Chr3:78474192-78474211 MsG0380016054.01.T01:CDS 35.0%
GCTTATTGTATGCTTGTCTT+GGG + Chr3:78473930-78473949 MsG0380016054.01.T01:intron 35.0%
GTGTGAATGTGTACTATTGT+AGG + Chr3:78475292-78475311 MsG0380016054.01.T01:three_prime_UTR 35.0%
TCATGCAGGAAAATCTTCAT+CGG + Chr3:78473254-78473273 MsG0380016054.01.T01:intron 35.0%
TGATGGGAACATGATTGATA+TGG + Chr3:78474101-78474120 MsG0380016054.01.T01:CDS 35.0%
TTGCAATAGAAATTGCATGC+AGG + Chr3:78475013-78475032 MsG0380016054.01.T01:three_prime_UTR 35.0%
! AACTGATTCCGTTATCATGA+AGG + Chr3:78473427-78473446 MsG0380016054.01.T01:CDS 35.0%
! GAAGTACTTTGAAAGGTATG+GGG + Chr3:78473400-78473419 MsG0380016054.01.T01:CDS 35.0%
! GTGAAGTACTTTGAAAGGTA+TGG + Chr3:78473398-78473417 MsG0380016054.01.T01:CDS 35.0%
! TTGACTCGATTCTTTGTTGT+AGG + Chr3:78474442-78474461 MsG0380016054.01.T01:intron 35.0%
!! CATATCAGGTTGAAATCAAG+AGG + Chr3:78473661-78473680 MsG0380016054.01.T01:intron 35.0%
!! CTCATTTTTCGTTTTCATGC+AGG + Chr3:78473240-78473259 MsG0380016054.01.T01:intron 35.0%
!!! CTTTTTTCCTTGGTTTTGGT+TGG - Chr3:78474398-78474417 None:intergenic 35.0%
!!! GAACCTTTTTTCCTTGGTTT+TGG - Chr3:78474402-78474421 None:intergenic 35.0%
ACAAGGAACTTACTACAGGT+GGG + Chr3:78475056-78475075 MsG0380016054.01.T01:three_prime_UTR 40.0%
ATAACCTCCCCTACTAGAAT+AGG - Chr3:78474942-78474961 None:intergenic 40.0%
ATCATGAAGGATCGACATAC+CGG + Chr3:78473440-78473459 MsG0380016054.01.T01:CDS 40.0%
ATTCATCCGATCTTCAACCA+TGG + Chr3:78473102-78473121 MsG0380016054.01.T01:exon 40.0%
ATTCTAGTAGGGGAGGTTAT+GGG + Chr3:78474942-78474961 MsG0380016054.01.T01:CDS 40.0%
CAAGCGACCTATAAGATGTA+GGG - Chr3:78474613-78474632 None:intergenic 40.0%
CTCAAAGCATGGGAATGTTA+TGG + Chr3:78473984-78474003 MsG0380016054.01.T01:CDS 40.0%
CTTATAGGCTGATGACTGAT+GGG - Chr3:78475179-78475198 None:intergenic 40.0%
GATACCTAGGGTTGTATCTT+TGG - Chr3:78473288-78473307 None:intergenic 40.0%
GATTGATATGGATGGTACTC+AGG + Chr3:78474113-78474132 MsG0380016054.01.T01:CDS 40.0%
GATTTGTGACCTGAAACAGT+GGG - Chr3:78473082-78473101 None:intergenic 40.0%
GGGAACATGATTGATATGGA+TGG + Chr3:78474105-78474124 MsG0380016054.01.T01:CDS 40.0%
GTAGGTTTAGCGATTATGGT+GGG + Chr3:78474645-78474664 MsG0380016054.01.T01:CDS 40.0%
GTTATGGCCCTACATCTTAT+AGG + Chr3:78474603-78474622 MsG0380016054.01.T01:CDS 40.0%
TAACCTCCCCTACTAGAATA+GGG - Chr3:78474941-78474960 None:intergenic 40.0%
TACAAGGAACTTACTACAGG+TGG + Chr3:78475055-78475074 MsG0380016054.01.T01:three_prime_UTR 40.0%
TACTGCTGAACATAGGTTAG+TGG + Chr3:78474185-78474204 MsG0380016054.01.T01:CDS 40.0%
TATTCTAGTAGGGGAGGTTA+TGG + Chr3:78474941-78474960 MsG0380016054.01.T01:CDS 40.0%
TCACATCATCAATGACAAGC+AGG + Chr3:78473532-78473551 MsG0380016054.01.T01:CDS 40.0%
TCACATTGATGGAAAGCAAC+AGG - Chr3:78474299-78474318 None:intergenic 40.0%
TCAGACACTTGCAATAACAC+TGG - Chr3:78474334-78474353 None:intergenic 40.0%
TCTTATAGGCTGATGACTGA+TGG - Chr3:78475180-78475199 None:intergenic 40.0%
TTAGCCAAAGATACAACCCT+AGG + Chr3:78473281-78473300 MsG0380016054.01.T01:CDS 40.0%
TTGCAAGTGTCTGACATATG+TGG + Chr3:78474340-78474359 MsG0380016054.01.T01:intron 40.0%
TTTGACGTGCAAAGATGTTG+TGG + Chr3:78474216-78474235 MsG0380016054.01.T01:intron 40.0%
! GATGATTTCAGTGGTGGTTT+TGG + Chr3:78474680-78474699 MsG0380016054.01.T01:CDS 40.0%
! GGTGGATTTGACGATTCTTA+TGG + Chr3:78474563-78474582 MsG0380016054.01.T01:CDS 40.0%
! GTTGTAGGTTGAGATCAAGA+AGG + Chr3:78474457-78474476 MsG0380016054.01.T01:intron 40.0%
! TCTTATGGAAGTTTTCCTGC+TGG + Chr3:78474578-78474597 MsG0380016054.01.T01:CDS 40.0%
! TGATTTGTGACCTGAAACAG+TGG - Chr3:78473083-78473102 None:intergenic 40.0%
! TTAGTTTGAGATGCACCCTT+TGG - Chr3:78473693-78473712 None:intergenic 40.0%
! TTTGAGGAAGAAGCTTGCTT+AGG - Chr3:78473046-78473065 None:intergenic 40.0%
!! TTTAGCGATTATGGTGGGTA+TGG + Chr3:78474650-78474669 MsG0380016054.01.T01:CDS 40.0%
AAGTGTCTGACATATGTGGC+GGG + Chr3:78474344-78474363 MsG0380016054.01.T01:intron 45.0%
ACATCTTATAGGTCGCTTGG+AGG + Chr3:78474614-78474633 MsG0380016054.01.T01:CDS 45.0%
ACTGGTGGAGGTTATGAATC+TGG + Chr3:78474884-78474903 MsG0380016054.01.T01:CDS 45.0%
AGAGGAGGAGAATCCTCATT+CGG + Chr3:78474746-78474765 MsG0380016054.01.T01:CDS 45.0%
AGGAGGACCCTATTCTAGTA+GGG + Chr3:78474931-78474950 MsG0380016054.01.T01:CDS 45.0%
CAAGTGTCTGACATATGTGG+CGG + Chr3:78474343-78474362 MsG0380016054.01.T01:intron 45.0%
CCAAGCGACCTATAAGATGT+AGG - Chr3:78474614-78474633 None:intergenic 45.0%
CCTACATCTTATAGGTCGCT+TGG + Chr3:78474611-78474630 MsG0380016054.01.T01:CDS 45.0%
GAATCCTCATTCGGTTACTC+TGG + Chr3:78474755-78474774 MsG0380016054.01.T01:CDS 45.0%
GGTAGGTTTAGCGATTATGG+TGG + Chr3:78474644-78474663 MsG0380016054.01.T01:CDS 45.0%
GGTGGTAGGTTTAGCGATTA+TGG + Chr3:78474641-78474660 MsG0380016054.01.T01:CDS 45.0%
GTGATAAACCCAAATCCTCG+AGG - Chr3:78473470-78473489 None:intergenic 45.0%
GTGATGCTACTGCTGAACAT+AGG + Chr3:78474178-78474197 MsG0380016054.01.T01:CDS 45.0%
TATCTGCCCAACCAAAACCA+AGG + Chr3:78474388-78474407 MsG0380016054.01.T01:intron 45.0%
TGCAGGAAAATCTTCATCGG+AGG + Chr3:78473257-78473276 MsG0380016054.01.T01:intron 45.0%
TGGAAGCCATGGTTGAAGAT+CGG - Chr3:78473111-78473130 None:intergenic 45.0%
TTCTAGTAGGGGAGGTTATG+GGG + Chr3:78474943-78474962 MsG0380016054.01.T01:CDS 45.0%
TTGTCTAAGCGACATGCTAG+TGG - Chr3:78475104-78475123 None:intergenic 45.0%
! AGTTTTCCTGCTGGAGGTTA+TGG + Chr3:78474587-78474606 MsG0380016054.01.T01:CDS 45.0%
! CGTTCTTACAATGGCGGTTT+TGG + Chr3:78474542-78474561 MsG0380016054.01.T01:CDS 45.0%
! GGATGGTACTCAGGTTAGTT+TGG + Chr3:78474122-78474141 MsG0380016054.01.T01:CDS 45.0%
! TATAGGTCGCTTGGAGGTTT+TGG + Chr3:78474620-78474639 MsG0380016054.01.T01:CDS 45.0%
! TATGGAAGTTTTCCTGCTGG+AGG + Chr3:78474581-78474600 MsG0380016054.01.T01:CDS 45.0%
! TCTAGGGCACGTTCTTACAA+TGG + Chr3:78474533-78474552 MsG0380016054.01.T01:CDS 45.0%
!! TCTTACAATGGCGGTTTTGG+TGG + Chr3:78474545-78474564 MsG0380016054.01.T01:CDS 45.0%
!!! AGTGGTGGTTTTGGAGGTTA+TGG + Chr3:78474689-78474708 MsG0380016054.01.T01:CDS 45.0%
!!! GATTTCAGTGGTGGTTTTGG+AGG + Chr3:78474683-78474702 MsG0380016054.01.T01:CDS 45.0%
AAATCCACGGGAACGCTTAG+TGG - Chr3:78474034-78474053 None:intergenic 50.0%
AAGAGAGAAGAGAGCGAACC+CGG - Chr3:78473173-78473192 None:intergenic 50.0%
AAGTCCGATAACCCTCACTC+CGG + Chr3:78473133-78473152 MsG0380016054.01.T01:CDS 50.0%
ACTAAGCGTTCCCGTGGATT+TGG + Chr3:78474033-78474052 MsG0380016054.01.T01:CDS 50.0%
AGGGCACGTTCTTACAATGG+CGG + Chr3:78474536-78474555 MsG0380016054.01.T01:CDS 50.0%
CAGGAGGACCCTATTCTAGT+AGG + Chr3:78474930-78474949 MsG0380016054.01.T01:CDS 50.0%
GGAGGACCCTATTCTAGTAG+GGG + Chr3:78474932-78474951 MsG0380016054.01.T01:CDS 50.0%
GGAGGTGGAGATGATTTCAG+TGG + Chr3:78474671-78474690 MsG0380016054.01.T01:CDS 50.0%
GGTGGAGATGATTTCAGTGG+TGG + Chr3:78474674-78474693 MsG0380016054.01.T01:CDS 50.0%
GTGACCTGAAACAGTGGGAA+GGG - Chr3:78473077-78473096 None:intergenic 50.0%
GTGAGGGTTATCGGACTTTC+TGG - Chr3:78473131-78473150 None:intergenic 50.0%
TCTAGTAGGGGAGGTTATGG+GGG + Chr3:78474944-78474963 MsG0380016054.01.T01:CDS 50.0%
TGACCTGAAACAGTGGGAAG+GGG - Chr3:78473076-78473095 None:intergenic 50.0%
TGTGACCTGAAACAGTGGGA+AGG - Chr3:78473078-78473097 None:intergenic 50.0%
TTTGGAGGTTATGGAGGCAG+TGG + Chr3:78474698-78474717 MsG0380016054.01.T01:CDS 50.0%
! ATCGGACTTTCTGGAAGCCA+TGG - Chr3:78473122-78473141 None:intergenic 50.0%
!! AGCGATTATGGTGGGTATGG+AGG + Chr3:78474653-78474672 MsG0380016054.01.T01:CDS 50.0%
!! GATTATGGTGGGTATGGAGG+TGG + Chr3:78474656-78474675 MsG0380016054.01.T01:CDS 50.0%
!!! GGTGGTTTTGGAGGTTATGG+AGG + Chr3:78474692-78474711 MsG0380016054.01.T01:CDS 50.0%
AAACAGTGGGAAGGGGGAAC+TGG - Chr3:78473069-78473088 None:intergenic 55.0%
AGAGAGAAGAGAGCGAACCC+GGG - Chr3:78473172-78473191 None:intergenic 55.0%
CACCACCATATCCACCACCA+AGG - Chr3:78474805-78474824 None:intergenic 55.0%
CACGGGAACGCTTAGTGGTA+TGG - Chr3:78474029-78474048 None:intergenic 55.0%
CATACCACTAAGCGTTCCCG+TGG + Chr3:78474027-78474046 MsG0380016054.01.T01:CDS 55.0%
CCCCCATGTAGGATCCATAG+CGG - Chr3:78474781-78474800 None:intergenic 55.0%
CCGCTATGGATCCTACATGG+GGG + Chr3:78474778-78474797 MsG0380016054.01.T01:CDS 55.0%
CGCTATGGATCCTACATGGG+GGG + Chr3:78474779-78474798 MsG0380016054.01.T01:CDS 55.0%
GACCTGAAACAGTGGGAAGG+GGG - Chr3:78473075-78473094 None:intergenic 55.0%
GCCGCTATGGATCCTACATG+GGG + Chr3:78474777-78474796 MsG0380016054.01.T01:CDS 55.0%
GGACCCTATTCTAGTAGGGG+AGG + Chr3:78474935-78474954 MsG0380016054.01.T01:CDS 55.0%
GGAGGTTATGAATCTGGCCC+TGG + Chr3:78474890-78474909 MsG0380016054.01.T01:CDS 55.0%
GGCCGCTATGGATCCTACAT+GGG + Chr3:78474776-78474795 MsG0380016054.01.T01:CDS 55.0%
TATGAATCTGGCCCTGGTGC+TGG + Chr3:78474896-78474915 MsG0380016054.01.T01:CDS 55.0%
TCATAACCTCCACCAGTGCC+TGG - Chr3:78474881-78474900 None:intergenic 55.0%
TCCCACCAAAACCAGCACCA+GGG - Chr3:78474910-78474929 None:intergenic 55.0%
TGGCCGCTATGGATCCTACA+TGG + Chr3:78474775-78474794 MsG0380016054.01.T01:CDS 55.0%
TTAGGCCCATATGGGAGAGG+TGG + Chr3:78474830-78474849 MsG0380016054.01.T01:CDS 55.0%
TTCCCCCTTCCCACTGTTTC+AGG + Chr3:78473070-78473089 MsG0380016054.01.T01:five_prime_UTR 55.0%
TTCGGTTACTCTGGCCGCTA+TGG + Chr3:78474764-78474783 MsG0380016054.01.T01:CDS 55.0%
! GGTGGTTATGCGGGCTATAG+AGG + Chr3:78474728-78474747 MsG0380016054.01.T01:CDS 55.0%
! GGTTATGCGGGCTATAGAGG+AGG + Chr3:78474731-78474750 MsG0380016054.01.T01:CDS 55.0%
!! AGGTCGCTTGGAGGTTTTGG+TGG + Chr3:78474623-78474642 MsG0380016054.01.T01:CDS 55.0%
!! CGCTTGGAGGTTTTGGTGGT+AGG + Chr3:78474627-78474646 MsG0380016054.01.T01:CDS 55.0%
!! CTTGGTGGTGGATATGGTGG+TGG + Chr3:78474803-78474822 MsG0380016054.01.T01:CDS 55.0%
!! GGATATGGTGGTGGTGGGTT+AGG + Chr3:78474812-78474831 MsG0380016054.01.T01:CDS 55.0%
!! GTGGTGGATATGGTGGTGGT+GGG + Chr3:78474807-78474826 MsG0380016054.01.T01:CDS 55.0%
!! GTGGTGGGTTAGGCCCATAT+GGG + Chr3:78474822-78474841 MsG0380016054.01.T01:CDS 55.0%
!! TGGTGGTGCTGGTGGTTATG+CGG + Chr3:78474718-78474737 MsG0380016054.01.T01:CDS 55.0%
ACCGGTCGTCCTCGAGGATT+TGG + Chr3:78473458-78473477 MsG0380016054.01.T01:CDS 60.0%
CCCAAATCCTCGAGGACGAC+CGG - Chr3:78473462-78473481 None:intergenic 60.0%
CCCATATGGGAGAGGTGGTG+GGG + Chr3:78474835-78474854 MsG0380016054.01.T01:CDS 60.0%
CCCCACCACCTCTCCCATAT+GGG - Chr3:78474838-78474857 None:intergenic 60.0%
CCGGTCGTCCTCGAGGATTT+GGG + Chr3:78473459-78473478 MsG0380016054.01.T01:CDS 60.0%
GATAACCCTCACTCCGGCGA+CGG + Chr3:78473139-78473158 MsG0380016054.01.T01:CDS 60.0%
GCCCATATGGGAGAGGTGGT+GGG + Chr3:78474834-78474853 MsG0380016054.01.T01:CDS 60.0%
GCGGCCAGAGTAACCGAATG+AGG - Chr3:78474762-78474781 None:intergenic 60.0%
GGAGGTTATGGAGGCAGTGG+TGG + Chr3:78474701-78474720 MsG0380016054.01.T01:CDS 60.0%
GGGTTAGGCCCATATGGGAG+AGG + Chr3:78474827-78474846 MsG0380016054.01.T01:CDS 60.0%
GTAGGGCCATAACCTCCAGC+AGG - Chr3:78474596-78474615 None:intergenic 60.0%
GTCCCACCAAAACCAGCACC+AGG - Chr3:78474911-78474930 None:intergenic 60.0%
GTCGCCGGAGTGAGGGTTAT+CGG - Chr3:78473140-78473159 None:intergenic 60.0%
TATGGCGGTTATGGCGGTCC+AGG + Chr3:78474860-78474879 MsG0380016054.01.T01:CDS 60.0%
! CCATATGGGAGAGGTGGTGG+GGG + Chr3:78474836-78474855 MsG0380016054.01.T01:CDS 60.0%
! TATGGAGGCAGTGGTGGTGC+TGG + Chr3:78474707-78474726 MsG0380016054.01.T01:CDS 60.0%
!! GGCCTTGGTGGTGGATATGG+TGG + Chr3:78474800-78474819 MsG0380016054.01.T01:CDS 60.0%
!! GGGAAGGGGGAACTGGTTTG+AGG - Chr3:78473062-78473081 None:intergenic 60.0%
!! GGTGGTGCTGGTGGTTATGC+GGG + Chr3:78474719-78474738 MsG0380016054.01.T01:CDS 60.0%
!! GGTGGTGGATATGGTGGTGG+TGG + Chr3:78474806-78474825 MsG0380016054.01.T01:CDS 60.0%
!! GGTGGTGGGTTAGGCCCATA+TGG + Chr3:78474821-78474840 MsG0380016054.01.T01:CDS 60.0%
!!! GCCCTGGTGCTGGTTTTGGT+GGG + Chr3:78474906-78474925 MsG0380016054.01.T01:CDS 60.0%
!!! GCTGGTTTTGGTGGGACAGG+AGG + Chr3:78474914-78474933 MsG0380016054.01.T01:CDS 60.0%
!!! GGTGCTGGTTTTGGTGGGAC+AGG + Chr3:78474911-78474930 MsG0380016054.01.T01:CDS 60.0%
!!! TCTGGCCCTGGTGCTGGTTT+TGG + Chr3:78474902-78474921 MsG0380016054.01.T01:CDS 60.0%
ACCACCAAGGCCCCCCATGT+AGG - Chr3:78474792-78474811 None:intergenic 65.0%
CCCCCACCACCTCTCCCATA+TGG - Chr3:78474839-78474858 None:intergenic 65.0%
CGACATACCGGTCGTCCTCG+AGG + Chr3:78473452-78473471 MsG0380016054.01.T01:CDS 65.0%
GAAGAGAGCGAACCCGGGAC+TGG - Chr3:78473167-78473186 None:intergenic 65.0%
GGATCCTACATGGGGGGCCT+TGG + Chr3:78474785-78474804 MsG0380016054.01.T01:CDS 65.0%
GGCCCATATGGGAGAGGTGG+TGG + Chr3:78474833-78474852 MsG0380016054.01.T01:CDS 65.0%
GGGGGCTATGGCGGTTATGG+CGG + Chr3:78474854-78474873 MsG0380016054.01.T01:CDS 65.0%
GGTGGGGGCTATGGCGGTTA+TGG + Chr3:78474851-78474870 MsG0380016054.01.T01:CDS 65.0%
GGTTATGGCGGTCCAGGCAC+TGG + Chr3:78474866-78474885 MsG0380016054.01.T01:CDS 65.0%
TACATGGGGGGCCTTGGTGG+TGG + Chr3:78474791-78474810 MsG0380016054.01.T01:CDS 65.0%
TCCTACATGGGGGGCCTTGG+TGG + Chr3:78474788-78474807 MsG0380016054.01.T01:CDS 65.0%
!! AGAGGTGGTGGGGGCTATGG+CGG + Chr3:78474845-78474864 MsG0380016054.01.T01:CDS 65.0%
!! GGGGGCCTTGGTGGTGGATA+TGG + Chr3:78474797-78474816 MsG0380016054.01.T01:CDS 65.0%
!! TATGGCGGTCCAGGCACTGG+TGG + Chr3:78474869-78474888 MsG0380016054.01.T01:CDS 65.0%
!!! GGCCCTGGTGCTGGTTTTGG+TGG + Chr3:78474905-78474924 MsG0380016054.01.T01:CDS 65.0%
! GGAGGCAGTGGTGGTGCTGG+TGG + Chr3:78474710-78474729 MsG0380016054.01.T01:CDS 70.0%
!! GGGAGAGGTGGTGGGGGCTA+TGG + Chr3:78474842-78474861 MsG0380016054.01.T01:CDS 70.0%
TGGCGCCGTCGCCGGAGTGA+GGG - Chr3:78473147-78473166 None:intergenic 75.0%
!! GGCGGTCCAGGCACTGGTGG+AGG + Chr3:78474872-78474891 MsG0380016054.01.T01:CDS 75.0%
! CTGGCGCCGTCGCCGGAGTG+AGG - Chr3:78473148-78473167 None:intergenic 80.0%
! TCCGGCGACGGCGCCAGTCC+CGG + Chr3:78473151-78473170 MsG0380016054.01.T01:CDS 80.0%
! CCGGCGACGGCGCCAGTCCC+GGG + Chr3:78473152-78473171 MsG0380016054.01.T01:CDS 85.0%
!! CCCGGGACTGGCGCCGTCGC+CGG - Chr3:78473155-78473174 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
Chr3 gene 78473043 78475361 78473043 ID=MsG0380016054.01;Name=MsG0380016054.01
Chr3 mRNA 78473043 78475361 78473043 ID=MsG0380016054.01.T01;Parent=MsG0380016054.01;Name=MsG0380016054.01.T01;_AED=0.46;_eAED=0.49;_QI=78|0.8|0.83|1|1|1|6|364|382
Chr3 exon 78473043 78473173 78473043 ID=MsG0380016054.01.T01:exon:17375;Parent=MsG0380016054.01.T01
Chr3 exon 78473262 78473302 78473262 ID=MsG0380016054.01.T01:exon:17376;Parent=MsG0380016054.01.T01
Chr3 exon 78473390 78473553 78473390 ID=MsG0380016054.01.T01:exon:17377;Parent=MsG0380016054.01.T01
Chr3 exon 78473669 78473768 78473669 ID=MsG0380016054.01.T01:exon:17378;Parent=MsG0380016054.01.T01
Chr3 exon 78473965 78474221 78473965 ID=MsG0380016054.01.T01:exon:17379;Parent=MsG0380016054.01.T01
Chr3 exon 78474464 78475361 78474464 ID=MsG0380016054.01.T01:exon:17380;Parent=MsG0380016054.01.T01
Chr3 five_prime_UTR 78473043 78473120 78473043 ID=MsG0380016054.01.T01:five_prime_utr;Parent=MsG0380016054.01.T01
Chr3 CDS 78473121 78473173 78473121 ID=MsG0380016054.01.T01:cds;Parent=MsG0380016054.01.T01
Chr3 CDS 78473262 78473302 78473262 ID=MsG0380016054.01.T01:cds;Parent=MsG0380016054.01.T01
Chr3 CDS 78473390 78473553 78473390 ID=MsG0380016054.01.T01:cds;Parent=MsG0380016054.01.T01
Chr3 CDS 78473669 78473768 78473669 ID=MsG0380016054.01.T01:cds;Parent=MsG0380016054.01.T01
Chr3 CDS 78473965 78474221 78473965 ID=MsG0380016054.01.T01:cds;Parent=MsG0380016054.01.T01
Chr3 CDS 78474464 78474997 78474464 ID=MsG0380016054.01.T01:cds;Parent=MsG0380016054.01.T01
Chr3 three_prime_UTR 78474998 78475361 78474998 ID=MsG0380016054.01.T01:three_prime_utr;Parent=MsG0380016054.01.T01
Gene Sequence

>MsG0380016054.01.T01

ATGGCTTCCAGAAAGTCCGATAACCCTCACTCCGGCGACGGCGCCAGTCCCGGGAAAATCTTCATCGGAGGTTTAGCCAAAGATACAACCCTAGAGACTTTTGTGAAGTACTTTGAAAGGTATGGGGAGATAACTGATTCCGTTATCATGAAGGATCGACATACCGGTCGTCCTCGAGGATTTGGGTTTATCACTTATGCGGATGCTTCTGTTGTTGATCAAGTTATTCAGGAGAATCACATCATCAATGACAAGCAGGTTGAAATCAAGAGGACTATTCCAAAGGGTGCATCTCAAACTAATGACTTCAAAACTAAGAAGATTTTTGTTGGTGGCATTCCAGCAATTGTATCTGAAGATGAGCTCAAGAACTTCTTCTCAAAGCATGGGAATGTTATGGAGCACGAGATCATACGCGACCATACCACTAAGCGTTCCCGTGGATTTGGTTTTGTAGTTTTTGATAGCGATAAGGCCGTTGATAATTTGTTAGCTGATGGGAACATGATTGATATGGATGGTACTCAGGTTAGTTTGGTTTGTTTATTTAGGGTGTTTAAAATTGAAACTGGTGATGCTACTGCTGAACATAGGTTAGTGGAAATTGGTTTTGACGTTGAGATCAAGAAGGCTGAACCAAAGAAATCTTCAAATTCATCTTCTTTTCCTTCATTTGGTAATGATTCTAGGGCACGTTCTTACAATGGCGGTTTTGGTGGATTTGACGATTCTTATGGAAGTTTTCCTGCTGGAGGTTATGGCCCTACATCTTATAGGTCGCTTGGAGGTTTTGGTGGTAGGTTTAGCGATTATGGTGGGTATGGAGGTGGAGATGATTTCAGTGGTGGTTTTGGAGGTTATGGAGGCAGTGGTGGTGCTGGTGGTTATGCGGGCTATAGAGGAGGAGAATCCTCATTCGGTTACTCTGGCCGCTATGGATCCTACATGGGGGGCCTTGGTGGTGGATATGGTGGTGGTGGGTTAGGCCCATATGGGAGAGGTGGTGGGGGCTATGGCGGTTATGGCGGTCCAGGCACTGGTGGAGGTTATGAATCTGGCCCTGGTGCTGGTTTTGGTGGGACAGGAGGACCCTATTCTAGTAGGGGAGGTTATGGGGGCAGTAGTCGTTACCATCCTTACACAAGATAG

Protein sequence

>MsG0380016054.01.T01

MASRKSDNPHSGDGASPGKIFIGGLAKDTTLETFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQENHIINDKQVEIKRTIPKGASQTNDFKTKKIFVGGIPAIVSEDELKNFFSKHGNVMEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDGTQVSLVCLFRVFKIETGDATAEHRLVEIGFDVEIKKAEPKKSSNSSSFPSFGNDSRARSYNGGFGGFDDSYGSFPAGGYGPTSYRSLGGFGGRFSDYGGYGGGDDFSGGFGGYGGSGGAGGYAGYRGGESSFGYSGRYGSYMGGLGGGYGGGGLGPYGRGGGGYGGYGGPGTGGGYESGPGAGFGGTGGPYSSRGGYGGSSRYHPYTR*