Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016886.01.T01 | KEH35640.1 | 87.121 | 132 | 2 | 1 | 3 | 134 | 72 | 188 | 2.69E-62 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016886.01.T01 | P0CB26 | 44.643 | 112 | 47 | 1 | 12 | 123 | 126 | 222 | 8.53E-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016886.01.T01 | A0A072VBS9 | 87.121 | 132 | 2 | 1 | 3 | 134 | 72 | 188 | 1.29e-62 | 200 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047791.01 | MsG0380016886.01 | 0.800473 | 1.417941e-48 | 6.607942e-46 |
| MsG0080048804.01 | MsG0380016886.01 | 0.862696 | 4.222220e-64 | 1.247628e-60 |
| MsG0180000152.01 | MsG0380016886.01 | 0.841989 | 3.399858e-58 | 5.082443e-55 |
| MsG0180000209.01 | MsG0380016886.01 | 0.801780 | 7.661234e-49 | 3.690408e-46 |
| MsG0180000365.01 | MsG0380016886.01 | -0.820854 | 5.504687e-53 | 4.406396e-50 |
| MsG0180000614.01 | MsG0380016886.01 | 0.807991 | 3.856536e-50 | 2.179270e-47 |
| MsG0180001141.01 | MsG0380016886.01 | 0.801163 | 1.024777e-48 | 4.860326e-46 |
| MsG0180001795.01 | MsG0380016886.01 | 0.822309 | 2.537537e-53 | 2.116191e-50 |
| MsG0180002458.01 | MsG0380016886.01 | 0.802546 | 5.330289e-49 | 2.618194e-46 |
| MsG0180002459.01 | MsG0380016886.01 | 0.818431 | 1.967291e-52 | 1.472391e-49 |
| MsG0180002482.01 | MsG0380016886.01 | 0.836792 | 7.601781e-57 | 9.682882e-54 |
| MsG0180002502.01 | MsG0380016886.01 | 0.802679 | 5.002956e-49 | 2.465757e-46 |
| MsG0180002504.01 | MsG0380016886.01 | 0.810386 | 1.182913e-50 | 7.120220e-48 |
| MsG0180003124.01 | MsG0380016886.01 | 0.800931 | 1.143438e-48 | 5.391324e-46 |
| MsG0180003952.01 | MsG0380016886.01 | 0.811231 | 7.764155e-51 | 4.779922e-48 |
| MsG0180004149.01 | MsG0380016886.01 | 0.803835 | 2.884025e-49 | 1.464178e-46 |
| MsG0180005193.01 | MsG0380016886.01 | 0.833059 | 6.627061e-56 | 7.546433e-53 |
| MsG0180005334.01 | MsG0380016886.01 | 0.801464 | 8.892094e-49 | 4.249343e-46 |
| MsG0180005424.01 | MsG0380016886.01 | 0.827866 | 1.234705e-54 | 1.206958e-51 |
| MsG0180005954.01 | MsG0380016886.01 | 0.801856 | 7.392360e-49 | 3.567920e-46 |
| MsG0180006144.01 | MsG0380016886.01 | 0.800520 | 1.386876e-48 | 6.471097e-46 |
| MsG0280006422.01 | MsG0380016886.01 | 0.816686 | 4.866799e-52 | 3.471870e-49 |
| MsG0280011093.01 | MsG0380016886.01 | 0.830268 | 3.231025e-55 | 3.387500e-52 |
| MsG0280011156.01 | MsG0380016886.01 | 0.815986 | 6.978949e-52 | 4.884471e-49 |
| MsG0280011421.01 | MsG0380016886.01 | 0.833076 | 6.565189e-56 | 7.479887e-53 |
| MsG0380012661.01 | MsG0380016886.01 | -0.843520 | 1.332548e-58 | 2.090262e-55 |
| MsG0380014647.01 | MsG0380016886.01 | 0.864590 | 1.089893e-64 | 3.440419e-61 |
| MsG0380015027.01 | MsG0380016886.01 | 0.843898 | 1.055422e-58 | 1.675549e-55 |
| MsG0380015164.01 | MsG0380016886.01 | 0.830542 | 2.770271e-55 | 2.927421e-52 |
| MsG0380015216.01 | MsG0380016886.01 | 0.805485 | 1.304997e-49 | 6.912504e-47 |
| MsG0380015466.01 | MsG0380016886.01 | 0.800007 | 1.763424e-48 | 8.121603e-46 |
| MsG0380015566.01 | MsG0380016886.01 | 0.803462 | 3.446288e-49 | 1.732933e-46 |
| MsG0380015822.01 | MsG0380016886.01 | 0.814773 | 1.299055e-51 | 8.795140e-49 |
| MsG0380016054.01 | MsG0380016886.01 | 0.816838 | 4.498457e-52 | 3.222663e-49 |
| MsG0380016560.01 | MsG0380016886.01 | 0.813985 | 1.939931e-51 | 1.285716e-48 |
| MsG0380016886.01 | MsG0380016910.01 | 0.807393 | 5.165919e-50 | 2.874085e-47 |
| MsG0380016886.01 | MsG0380017680.01 | 0.813203 | 2.882216e-51 | 1.870113e-48 |
| MsG0380016886.01 | MsG0480018110.01 | 0.810691 | 1.016187e-50 | 6.167112e-48 |
| MsG0380016886.01 | MsG0480018206.01 | 0.807704 | 4.438569e-50 | 2.489352e-47 |
| MsG0380016886.01 | MsG0480018906.01 | 0.801481 | 8.821362e-49 | 4.217430e-46 |
| MsG0380016886.01 | MsG0480020090.01 | 0.804507 | 2.090068e-49 | 1.079504e-46 |
| MsG0380016886.01 | MsG0480020874.01 | 0.806757 | 7.043348e-50 | 3.854237e-47 |
| MsG0380016886.01 | MsG0480021448.01 | 0.832148 | 1.115177e-55 | 1.235716e-52 |
| MsG0380016886.01 | MsG0480021451.01 | 0.817146 | 3.836745e-52 | 2.771812e-49 |
| MsG0380016886.01 | MsG0480021453.01 | 0.832953 | 7.043512e-56 | 7.994531e-53 |
| MsG0380016886.01 | MsG0480021750.01 | 0.835714 | 1.429140e-56 | 1.762199e-53 |
| MsG0380016886.01 | MsG0480022052.01 | -0.815640 | 8.333844e-52 | 5.778040e-49 |
| MsG0380016886.01 | MsG0480022164.01 | 0.817725 | 2.841613e-52 | 2.085822e-49 |
| MsG0380016886.01 | MsG0480022222.01 | 0.842306 | 2.801917e-58 | 4.230894e-55 |
| MsG0380016886.01 | MsG0480022707.01 | 0.849097 | 4.022687e-60 | 7.542905e-57 |
| MsG0380016886.01 | MsG0480022768.01 | 0.867616 | 1.199953e-65 | 4.216082e-62 |
| MsG0380016886.01 | MsG0480022795.01 | 0.834290 | 3.264151e-56 | 3.856719e-53 |
| MsG0380016886.01 | MsG0480022877.01 | 0.801990 | 6.935806e-49 | 3.358872e-46 |
| MsG0380016886.01 | MsG0480023535.01 | 0.843591 | 1.275455e-58 | 2.005351e-55 |
| MsG0380016886.01 | MsG0580024051.01 | 0.802425 | 5.646006e-49 | 2.764875e-46 |
| MsG0380016886.01 | MsG0580024468.01 | 0.872742 | 2.516709e-67 | 1.064963e-63 |
| MsG0380016886.01 | MsG0580025756.01 | 0.802494 | 5.462706e-49 | 2.679650e-46 |
| MsG0380016886.01 | MsG0580026047.01 | 0.825196 | 5.346711e-54 | 4.840324e-51 |
| MsG0380016886.01 | MsG0580026718.01 | 0.808596 | 2.865427e-50 | 1.645116e-47 |
| MsG0380016886.01 | MsG0580027031.01 | 0.820538 | 6.504779e-53 | 5.161201e-50 |
| MsG0380016886.01 | MsG0580027344.01 | 0.830155 | 3.443652e-55 | 3.598725e-52 |
| MsG0380016886.01 | MsG0580029014.01 | 0.817489 | 3.212214e-52 | 2.342628e-49 |
| MsG0380016886.01 | MsG0580029717.01 | 0.804109 | 2.529249e-49 | 1.293110e-46 |
| MsG0380016886.01 | MsG0680030415.01 | 0.800956 | 1.130092e-48 | 5.331834e-46 |
| MsG0380016886.01 | MsG0680035659.01 | 0.817432 | 3.307416e-52 | 2.408367e-49 |
| MsG0380016886.01 | MsG0680035704.01 | 0.801562 | 8.492683e-49 | 4.068417e-46 |
| MsG0380016886.01 | MsG0780036288.01 | 0.804129 | 2.505312e-49 | 1.281513e-46 |
| MsG0380016886.01 | MsG0780036705.01 | 0.815534 | 8.802934e-52 | 6.085230e-49 |
| MsG0380016886.01 | MsG0780037918.01 | 0.812904 | 3.352154e-51 | 2.157701e-48 |
| MsG0380016886.01 | MsG0780037942.01 | 0.847319 | 1.246423e-59 | 2.206729e-56 |
| MsG0380016886.01 | MsG0780038911.01 | 0.813060 | 3.098061e-51 | 2.002442e-48 |
| MsG0380016886.01 | MsG0780039144.01 | 0.809846 | 1.546133e-50 | 9.176626e-48 |
| MsG0380016886.01 | MsG0780039844.01 | 0.805816 | 1.112047e-49 | 5.940898e-47 |
| MsG0380016886.01 | MsG0780040057.01 | 0.808233 | 3.425327e-50 | 1.948023e-47 |
| MsG0380016886.01 | MsG0780040162.01 | 0.833522 | 5.081474e-56 | 5.866882e-53 |
| MsG0380016886.01 | MsG0780040858.01 | 0.888660 | 4.848486e-73 | 3.790010e-69 |
| MsG0380016886.01 | MsG0780041402.01 | 0.827381 | 1.614579e-54 | 1.556358e-51 |
| MsG0380016886.01 | MsG0780041456.01 | 0.803813 | 2.913708e-49 | 1.478425e-46 |
| MsG0380016886.01 | MsG0880042779.01 | 0.807550 | 4.786465e-50 | 2.673665e-47 |
| MsG0380016886.01 | MsG0880043144.01 | 0.804021 | 2.638388e-49 | 1.345896e-46 |
| MsG0380016886.01 | MsG0880043303.01 | 0.822817 | 1.933524e-53 | 1.635948e-50 |
| MsG0380016886.01 | MsG0880043465.01 | 0.816266 | 6.041179e-52 | 4.260817e-49 |
| MsG0380016886.01 | MsG0880043905.01 | 0.816716 | 4.790073e-52 | 3.420153e-49 |
| MsG0380016886.01 | MsG0880044394.01 | 0.834617 | 2.703072e-56 | 3.224917e-53 |
| MsG0380016886.01 | MsG0880044415.01 | 0.822196 | 2.696211e-53 | 2.241077e-50 |
| MsG0380016886.01 | MsG0880045042.01 | 0.840053 | 1.096047e-57 | 1.542936e-54 |
| MsG0380016886.01 | MsG0880045168.01 | 0.806267 | 8.935715e-50 | 4.829229e-47 |
| MsG0380016886.01 | MsG0880045555.01 | -0.821139 | 4.731473e-53 | 3.817589e-50 |
| MsG0380016886.01 | MsG0880046126.01 | 0.885266 | 9.427348e-72 | 6.427869e-68 |
| MsG0380016886.01 | MsG0880047165.01 | 0.823251 | 1.531513e-53 | 1.311676e-50 |
| MsG0380016886.01 | MsG0880047427.01 | 0.804833 | 1.786388e-49 | 9.305727e-47 |
| MsG0380016886.01 | MsG0880047448.01 | 0.836622 | 8.401389e-57 | 1.064516e-53 |
| MsG0280006696.01 | MsG0380016886.01 | 0.815090 | 1.104695e-51 | 7.543715e-49 |
| MsG0280007058.01 | MsG0380016886.01 | -0.828506 | 8.655091e-55 | 8.620214e-52 |
| MsG0280009109.01 | MsG0380016886.01 | 0.802097 | 6.593075e-49 | 3.201673e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016886.01.T01 | MTR_3g097170 | 87.121 | 132 | 2 | 1 | 3 | 134 | 72 | 188 | 3.26e-66 | 200 |
| MsG0380016886.01.T01 | MTR_3g097170 | 87.121 | 132 | 2 | 1 | 3 | 134 | 72 | 188 | 3.83e-66 | 200 |
| MsG0380016886.01.T01 | MTR_2g007150 | 59.821 | 112 | 30 | 1 | 11 | 122 | 80 | 176 | 4.20e-31 | 111 |
| MsG0380016886.01.T01 | MTR_2g007150 | 59.821 | 112 | 30 | 1 | 11 | 122 | 121 | 217 | 4.65e-31 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016886.01.T01 | AT5G13340 | 65.000 | 120 | 27 | 1 | 7 | 126 | 84 | 188 | 5.42e-30 | 108 |
| MsG0380016886.01.T01 | AT1G10890 | 47.321 | 112 | 52 | 1 | 12 | 123 | 78 | 182 | 1.97e-15 | 70.5 |
| MsG0380016886.01.T01 | AT1G10890 | 47.321 | 112 | 52 | 1 | 12 | 123 | 79 | 183 | 2.23e-15 | 70.5 |
| MsG0380016886.01.T01 | AT1G10890 | 47.321 | 112 | 52 | 1 | 12 | 123 | 126 | 230 | 3.00e-15 | 70.5 |
| MsG0380016886.01.T01 | AT1G10890 | 44.643 | 112 | 47 | 1 | 12 | 123 | 126 | 222 | 8.70e-13 | 63.9 |
Find 23 sgRNAs with CRISPR-Local
Find 63 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAATTGTGTTAAATTTC+CGG | 0.147868 | 3:-89063481 | MsG0380016886.01.T01:CDS |
| AGATGCTTGAAGAGAATAGA+AGG | 0.347191 | 3:-89062912 | MsG0380016886.01.T01:CDS |
| CTACAATTTATGATGTCGTC+TGG | 0.373534 | 3:-89063936 | None:intergenic |
| AGACGAAGAATTAAAACTAT+TGG | 0.380286 | 3:-89063804 | MsG0380016886.01.T01:CDS |
| GTCTCAGAGAAGAGAAGCTC+TGG | 0.388969 | 3:-89062878 | MsG0380016886.01.T01:CDS |
| CATACAAAATTACCGATTGC+CGG | 0.398241 | 3:+89063462 | None:intergenic |
| TGTGTTAAATTTCCGGCAAT+CGG | 0.430948 | 3:-89063474 | MsG0380016886.01.T01:intron |
| ATGCTCTTACTGAAGCTAGA+AGG | 0.450504 | 3:-89063622 | MsG0380016886.01.T01:CDS |
| TGAAGAGAATAGAAGGAGAG+TGG | 0.496275 | 3:-89062905 | MsG0380016886.01.T01:CDS |
| TGTTGAGGAAAAGCTTAATA+CGG | 0.520103 | 3:-89063738 | MsG0380016886.01.T01:CDS |
| CGAAGAATTAAAACTATTGG+AGG | 0.522415 | 3:-89063801 | MsG0380016886.01.T01:CDS |
| TCGTAAAGAGAGAGAAGAGC+TGG | 0.523303 | 3:-89062938 | MsG0380016886.01.T01:CDS |
| AGCTCTGGAACTGCAGAGGA+AGG | 0.525953 | 3:-89062863 | MsG0380016886.01.T01:CDS |
| TACAATTTATGATGTCGTCT+GGG | 0.539257 | 3:-89063935 | None:intergenic |
| GCTTAATACGGAGGAAGTCA+AGG | 0.565124 | 3:-89063726 | MsG0380016886.01.T01:CDS |
| GGAACTGCAGAGGAAGGAGG+AGG | 0.574057 | 3:-89062857 | MsG0380016886.01.T01:CDS |
| GGAAGGAGGAGGAACGACAA+AGG | 0.600196 | 3:-89062846 | MsG0380016886.01.T01:CDS |
| AAGTCAAGGTGGAAATTGAA+AGG | 0.603231 | 3:-89063712 | MsG0380016886.01.T01:CDS |
| TCTGGAACTGCAGAGGAAGG+AGG | 0.605899 | 3:-89062860 | MsG0380016886.01.T01:CDS |
| ATTGAAAGGCGTGTAGCAGA+AGG | 0.606667 | 3:-89063698 | MsG0380016886.01.T01:CDS |
| GAGAAGCTCTGGAACTGCAG+AGG | 0.616097 | 3:-89062867 | MsG0380016886.01.T01:CDS |
| TGAGGAAAAGCTTAATACGG+AGG | 0.690564 | 3:-89063735 | MsG0380016886.01.T01:CDS |
| TAATACGGAGGAAGTCAAGG+TGG | 0.699506 | 3:-89063723 | MsG0380016886.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAATCTTGAATCAAATTT+GGG | + | Chr3:89063437-89063456 | None:intergenic | 20.0% |
| !! | ATAGTAATCAAGTCATAAAA+AGG | - | Chr3:89063557-89063576 | MsG0380016886.01.T01:intron | 20.0% |
| !! | GATAAAGATGTTTAAAGATA+TGG | + | Chr3:89063482-89063501 | None:intergenic | 20.0% |
| !! | GTAGTAATTAGATCATAAAA+AGG | - | Chr3:89063389-89063408 | MsG0380016886.01.T01:intron | 20.0% |
| !! | TACAAATCTTGAATCAAATT+TGG | + | Chr3:89063438-89063457 | None:intergenic | 20.0% |
| !! | TATCTTTAAACATCTTTATC+TGG | - | Chr3:89063482-89063501 | MsG0380016886.01.T01:CDS | 20.0% |
| !! | TCTGTAATTACATTTGAAAA+AGG | - | Chr3:89063245-89063264 | MsG0380016886.01.T01:intron | 20.0% |
| !! | TTGAAATTGTGTTAAATTTC+CGG | - | Chr3:89063283-89063302 | MsG0380016886.01.T01:intron | 20.0% |
| !! | TTTCAAATGTAATTACAGAA+TGG | + | Chr3:89063244-89063263 | None:intergenic | 20.0% |
| !!! | GTTCTTTATCATTTTGTATT+TGG | - | Chr3:89062919-89062938 | MsG0380016886.01.T01:CDS | 20.0% |
| !!! | TAATGGATAAAGATAAGATA+TGG | + | Chr3:89063650-89063669 | None:intergenic | 20.0% |
| !!! | TGAATACTACTTTTAATGTA+TGG | - | Chr3:89063758-89063777 | MsG0380016886.01.T01:CDS | 20.0% |
| !!! | TTAGATCATAAAAAGGTTTT+TGG | - | Chr3:89063396-89063415 | MsG0380016886.01.T01:intron | 20.0% |
| ! | ACAAATAACAAATCGTACAT+TGG | + | Chr3:89063727-89063746 | None:intergenic | 25.0% |
| ! | AGACGAAGAATTAAAACTAT+TGG | - | Chr3:89062960-89062979 | MsG0380016886.01.T01:intron | 25.0% |
| AATCAAATTTGGGAATCCTA+TGG | + | Chr3:89063427-89063446 | None:intergenic | 30.0% | |
| CGAAGAATTAAAACTATTGG+AGG | - | Chr3:89062963-89062982 | MsG0380016886.01.T01:intron | 30.0% | |
| CTAATTACTACTTGTACGAA+CGG | + | Chr3:89063380-89063399 | None:intergenic | 30.0% | |
| TAATTACTACTTGTACGAAC+GGG | + | Chr3:89063379-89063398 | None:intergenic | 30.0% | |
| TGTTGAGGAAAAGCTTAATA+CGG | - | Chr3:89063026-89063045 | MsG0380016886.01.T01:intron | 30.0% | |
| ! | TAACAAATCGTACATTGGTT+AGG | + | Chr3:89063722-89063741 | None:intergenic | 30.0% |
| !! | AAGGTTTTTGGATATTCCAT+AGG | - | Chr3:89063408-89063427 | MsG0380016886.01.T01:intron | 30.0% |
| !! | GCTTTTCCTCAACATTTTTT+CGG | + | Chr3:89063020-89063039 | None:intergenic | 30.0% |
| !! | GTACATTGGTTAGGTTTTAA+TGG | + | Chr3:89063713-89063732 | None:intergenic | 30.0% |
| AAGTCAAGGTGGAAATTGAA+AGG | - | Chr3:89063052-89063071 | MsG0380016886.01.T01:intron | 35.0% | |
| AATCGCCATCTCATAGAAAA+AGG | + | Chr3:89063200-89063219 | None:intergenic | 35.0% | |
| AATTACTACTTGTACGAACG+GGG | + | Chr3:89063378-89063397 | None:intergenic | 35.0% | |
| AGATGCTTGAAGAGAATAGA+AGG | - | Chr3:89063852-89063871 | MsG0380016886.01.T01:intron | 35.0% | |
| AGCTATCCGAAAAAATGTTG+AGG | - | Chr3:89063011-89063030 | MsG0380016886.01.T01:intron | 35.0% | |
| ATCGCCATCTCATAGAAAAA+GGG | + | Chr3:89063199-89063218 | None:intergenic | 35.0% | |
| CCATTAGCACTATGATAATC+AGG | - | Chr3:89063664-89063683 | MsG0380016886.01.T01:CDS | 35.0% | |
| CCTGATTATCATAGTGCTAA+TGG | + | Chr3:89063667-89063686 | None:intergenic | 35.0% | |
| TGTGTTAAATTTCCGGCAAT+CGG | - | Chr3:89063290-89063309 | MsG0380016886.01.T01:intron | 35.0% | |
| ! | CATACAAAATTACCGATTGC+CGG | + | Chr3:89063305-89063324 | None:intergenic | 35.0% |
| ! | GTTACCCTTTTTCTATGAGA+TGG | - | Chr3:89063192-89063211 | MsG0380016886.01.T01:intron | 35.0% |
| ! | TGTGTTTGTTGAAATTCTGC+AGG | - | Chr3:89063796-89063815 | MsG0380016886.01.T01:CDS | 35.0% |
| !! | CATTGGTTAGGTTTTAATGG+TGG | + | Chr3:89063710-89063729 | None:intergenic | 35.0% |
| ATGCTCTTACTGAAGCTAGA+AGG | - | Chr3:89063142-89063161 | MsG0380016886.01.T01:intron | 40.0% | |
| CAAAAATCCTGGTTTCTGCA+GGG | + | Chr3:89063522-89063541 | None:intergenic | 40.0% | |
| TCTATGAGATGGCGATTGAA+GGG | - | Chr3:89063203-89063222 | MsG0380016886.01.T01:intron | 40.0% | |
| TGAAGAGAATAGAAGGAGAG+TGG | - | Chr3:89063859-89063878 | MsG0380016886.01.T01:intron | 40.0% | |
| TGAGGAAAAGCTTAATACGG+AGG | - | Chr3:89063029-89063048 | MsG0380016886.01.T01:intron | 40.0% | |
| TTCTATGAGATGGCGATTGA+AGG | - | Chr3:89063202-89063221 | MsG0380016886.01.T01:intron | 40.0% | |
| ! | AACCAGGATTTTTGCTCTGT+TGG | - | Chr3:89063528-89063547 | MsG0380016886.01.T01:intron | 40.0% |
| CACCAACAGAGCAAAAATCC+TGG | + | Chr3:89063533-89063552 | None:intergenic | 45.0% | |
| CTATGAGATGGCGATTGAAG+GGG | - | Chr3:89063204-89063223 | MsG0380016886.01.T01:intron | 45.0% | |
| GCAAAAATCCTGGTTTCTGC+AGG | + | Chr3:89063523-89063542 | None:intergenic | 45.0% | |
| GCTTAATACGGAGGAAGTCA+AGG | - | Chr3:89063038-89063057 | MsG0380016886.01.T01:intron | 45.0% | |
| TAATACGGAGGAAGTCAAGG+TGG | - | Chr3:89063041-89063060 | MsG0380016886.01.T01:intron | 45.0% | |
| TCGTAAAGAGAGAGAAGAGC+TGG | - | Chr3:89063826-89063845 | MsG0380016886.01.T01:intron | 45.0% | |
| ! | ATTGAAAGGCGTGTAGCAGA+AGG | - | Chr3:89063066-89063085 | MsG0380016886.01.T01:intron | 45.0% |
| AAATCCTGGTTTCTGCAGGG+TGG | + | Chr3:89063519-89063538 | None:intergenic | 50.0% | |
| AGATTCTGGGTTCTGCAAGG+TGG | + | Chr3:89063352-89063371 | None:intergenic | 50.0% | |
| CAGAGATTCTGGGTTCTGCA+AGG | + | Chr3:89063355-89063374 | None:intergenic | 50.0% | |
| GTCTCAGAGAAGAGAAGCTC+TGG | - | Chr3:89063886-89063905 | MsG0380016886.01.T01:intron | 50.0% | |
| ACGAACGGGGCAGAGATTCT+GGG | + | Chr3:89063365-89063384 | None:intergenic | 55.0% | |
| GGAAGGAGGAGGAACGACAA+AGG | - | Chr3:89063918-89063937 | MsG0380016886.01.T01:intron | 55.0% | |
| TACGAACGGGGCAGAGATTC+TGG | + | Chr3:89063366-89063385 | None:intergenic | 55.0% | |
| ! | TCTGGAACTGCAGAGGAAGG+AGG | - | Chr3:89063904-89063923 | MsG0380016886.01.T01:intron | 55.0% |
| !! | AGCTCTGGAACTGCAGAGGA+AGG | - | Chr3:89063901-89063920 | MsG0380016886.01.T01:intron | 55.0% |
| !! | GAGAAGCTCTGGAACTGCAG+AGG | - | Chr3:89063897-89063916 | MsG0380016886.01.T01:intron | 55.0% |
| GGAACTGCAGAGGAAGGAGG+AGG | - | Chr3:89063907-89063926 | MsG0380016886.01.T01:intron | 60.0% | |
| TGCGCCACCCTGCAGAAACC+AGG | - | Chr3:89063512-89063531 | MsG0380016886.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 89062840 | 89063946 | 89062840 | ID=MsG0380016886.01;Name=MsG0380016886.01 |
| Chr3 | mRNA | 89062840 | 89063946 | 89062840 | ID=MsG0380016886.01.T01;Parent=MsG0380016886.01;Name=MsG0380016886.01.T01;_AED=0.42;_eAED=0.51;_QI=0|0|0|1|1|1|4|0|135 |
| Chr3 | exon | 89063936 | 89063946 | 89063936 | ID=MsG0380016886.01.T01:exon:5693;Parent=MsG0380016886.01.T01 |
| Chr3 | exon | 89063616 | 89063838 | 89063616 | ID=MsG0380016886.01.T01:exon:5692;Parent=MsG0380016886.01.T01 |
| Chr3 | exon | 89063475 | 89063519 | 89063475 | ID=MsG0380016886.01.T01:exon:5691;Parent=MsG0380016886.01.T01 |
| Chr3 | exon | 89062840 | 89062968 | 89062840 | ID=MsG0380016886.01.T01:exon:5690;Parent=MsG0380016886.01.T01 |
| Chr3 | CDS | 89063936 | 89063946 | 89063936 | ID=MsG0380016886.01.T01:cds;Parent=MsG0380016886.01.T01 |
| Chr3 | CDS | 89063616 | 89063838 | 89063616 | ID=MsG0380016886.01.T01:cds;Parent=MsG0380016886.01.T01 |
| Chr3 | CDS | 89063475 | 89063519 | 89063475 | ID=MsG0380016886.01.T01:cds;Parent=MsG0380016886.01.T01 |
| Chr3 | CDS | 89062840 | 89062968 | 89062840 | ID=MsG0380016886.01.T01:cds;Parent=MsG0380016886.01.T01 |
| Gene Sequence |
| Protein sequence |
