Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011120.01.T01 | XP_003597533.2 | 93.182 | 44 | 3 | 0 | 86 | 129 | 239 | 282 | 2.52E-19 | 92.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011120.01.T01 | Q9SID3 | 70.455 | 44 | 13 | 0 | 86 | 129 | 234 | 277 | 9.29E-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011120.01.T01 | G7IS04 | 93.182 | 44 | 3 | 0 | 86 | 129 | 239 | 282 | 1.20e-19 | 92.8 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048699.01 | MsG0280011120.01 | 0.804335 | 2.269817e-49 | 1.167226e-46 |
| MsG0080049013.01 | MsG0280011120.01 | 0.818918 | 1.525459e-52 | 1.157201e-49 |
| MsG0180000365.01 | MsG0280011120.01 | 0.810359 | 1.199090e-50 | 7.212759e-48 |
| MsG0180001043.01 | MsG0280011120.01 | -0.810553 | 1.088381e-50 | 6.580707e-48 |
| MsG0180001141.01 | MsG0280011120.01 | -0.804928 | 1.706566e-49 | 8.911818e-47 |
| MsG0180001213.01 | MsG0280011120.01 | -0.809056 | 2.284756e-50 | 1.327819e-47 |
| MsG0180001795.01 | MsG0280011120.01 | -0.836791 | 7.607447e-57 | 9.689755e-54 |
| MsG0180002458.01 | MsG0280011120.01 | -0.818611 | 1.791195e-52 | 1.347114e-49 |
| MsG0180002491.01 | MsG0280011120.01 | -0.805565 | 1.255448e-49 | 6.663489e-47 |
| MsG0180003073.01 | MsG0280011120.01 | -0.845597 | 3.677859e-59 | 6.160265e-56 |
| MsG0180003088.01 | MsG0280011120.01 | -0.825157 | 5.462317e-54 | 4.939502e-51 |
| MsG0180003097.01 | MsG0280011120.01 | -0.823434 | 1.387925e-53 | 1.194864e-50 |
| MsG0180003113.01 | MsG0280011120.01 | -0.831422 | 1.684758e-55 | 1.827295e-52 |
| MsG0180003128.01 | MsG0280011120.01 | -0.808866 | 2.509564e-50 | 1.451056e-47 |
| MsG0180003854.01 | MsG0280011120.01 | -0.801377 | 9.264849e-49 | 4.417804e-46 |
| MsG0180004151.01 | MsG0280011120.01 | -0.803523 | 3.347254e-49 | 1.685845e-46 |
| MsG0180004761.01 | MsG0280011120.01 | 0.801440 | 8.994122e-49 | 4.295503e-46 |
| MsG0180004886.01 | MsG0280011120.01 | 0.803158 | 3.983465e-49 | 1.987455e-46 |
| MsG0180005125.01 | MsG0280011120.01 | -0.806005 | 1.014987e-49 | 5.448781e-47 |
| MsG0180005664.01 | MsG0280011120.01 | -0.807672 | 4.508123e-50 | 2.526205e-47 |
| MsG0180006097.01 | MsG0280011120.01 | -0.802840 | 4.635854e-49 | 2.294338e-46 |
| MsG0180006143.01 | MsG0280011120.01 | -0.824145 | 9.460901e-54 | 8.310363e-51 |
| MsG0180006226.01 | MsG0280011120.01 | 0.857693 | 1.372016e-62 | 3.415483e-59 |
| MsG0280006406.01 | MsG0280011120.01 | -0.818723 | 1.689391e-52 | 1.274522e-49 |
| MsG0280006411.01 | MsG0280011120.01 | -0.813833 | 2.094874e-51 | 1.382752e-48 |
| MsG0280010695.01 | MsG0280011120.01 | 0.818704 | 1.706201e-52 | 1.286498e-49 |
| MsG0280011120.01 | MsG0380012566.01 | -0.858252 | 9.356434e-63 | 2.373038e-59 |
| MsG0280011120.01 | MsG0380012661.01 | 0.804667 | 1.935143e-49 | 1.003670e-46 |
| MsG0280011120.01 | MsG0380013184.01 | -0.825793 | 3.861447e-54 | 3.555611e-51 |
| MsG0280011120.01 | MsG0380013951.01 | 0.810161 | 1.322810e-50 | 7.915783e-48 |
| MsG0280011120.01 | MsG0380013968.01 | 0.815641 | 8.332251e-52 | 5.776982e-49 |
| MsG0280011120.01 | MsG0380014018.01 | 0.810676 | 1.024194e-50 | 6.213074e-48 |
| MsG0280011120.01 | MsG0380014647.01 | -0.822866 | 1.883667e-53 | 1.595955e-50 |
| MsG0280011120.01 | MsG0380015770.01 | -0.805455 | 1.323673e-49 | 7.006193e-47 |
| MsG0280011120.01 | MsG0380015793.01 | 0.824852 | 6.446774e-54 | 5.779228e-51 |
| MsG0280011120.01 | MsG0380016054.01 | -0.801163 | 1.024901e-48 | 4.860847e-46 |
| MsG0280011120.01 | MsG0380017998.01 | -0.828194 | 1.029637e-54 | 1.016191e-51 |
| MsG0280011120.01 | MsG0380018009.01 | -0.805642 | 1.209697e-49 | 6.433600e-47 |
| MsG0280011120.01 | MsG0480018187.01 | -0.804187 | 2.436094e-49 | 1.247977e-46 |
| MsG0280011120.01 | MsG0480019038.01 | -0.803624 | 3.190232e-49 | 1.610834e-46 |
| MsG0280011120.01 | MsG0480019373.01 | -0.805556 | 1.260807e-49 | 6.690352e-47 |
| MsG0280011120.01 | MsG0480020052.01 | 0.818549 | 1.850014e-52 | 1.389066e-49 |
| MsG0280011120.01 | MsG0480020372.01 | -0.805293 | 1.431627e-49 | 7.545830e-47 |
| MsG0280011120.01 | MsG0480020445.01 | -0.813497 | 2.484312e-51 | 1.625036e-48 |
| MsG0280011120.01 | MsG0480021034.01 | -0.823516 | 1.328076e-53 | 1.146035e-50 |
| MsG0280011120.01 | MsG0480021249.01 | -0.832317 | 1.012730e-55 | 1.127747e-52 |
| MsG0280011120.01 | MsG0480021448.01 | -0.829627 | 4.630914e-55 | 4.765832e-52 |
| MsG0280011120.01 | MsG0480021904.01 | -0.819774 | 9.732784e-53 | 7.560705e-50 |
| MsG0280011120.01 | MsG0480022052.01 | 0.821288 | 4.372284e-53 | 3.542201e-50 |
| MsG0280011120.01 | MsG0480022274.01 | -0.812694 | 3.725984e-51 | 2.385143e-48 |
| MsG0280011120.01 | MsG0480022447.01 | 0.806343 | 8.612458e-50 | 4.663220e-47 |
| MsG0280011120.01 | MsG0480023174.01 | -0.813628 | 2.324675e-51 | 1.525962e-48 |
| MsG0280011120.01 | MsG0480023707.01 | -0.803812 | 2.915817e-49 | 1.479411e-46 |
| MsG0280011120.01 | MsG0580024165.01 | -0.802125 | 6.506886e-49 | 3.162023e-46 |
| MsG0280011120.01 | MsG0580024458.01 | 0.831061 | 2.065789e-55 | 2.216873e-52 |
| MsG0280011120.01 | MsG0580024570.01 | 0.829041 | 6.424691e-55 | 6.498636e-52 |
| MsG0280011120.01 | MsG0580025134.01 | -0.820190 | 7.819004e-53 | 6.144661e-50 |
| MsG0280011120.01 | MsG0580025421.01 | -0.828385 | 9.257606e-55 | 9.188037e-52 |
| MsG0280011120.01 | MsG0580029014.01 | -0.812331 | 4.474269e-51 | 2.836774e-48 |
| MsG0280011120.01 | MsG0580029642.01 | -0.827660 | 1.384064e-54 | 1.344750e-51 |
| MsG0280011120.01 | MsG0580029668.01 | 0.856572 | 2.938836e-62 | 7.046080e-59 |
| MsG0280011120.01 | MsG0680031243.01 | -0.802536 | 5.355667e-49 | 2.629987e-46 |
| MsG0280011120.01 | MsG0680031790.01 | 0.813284 | 2.766607e-51 | 1.799101e-48 |
| MsG0280011120.01 | MsG0680032430.01 | -0.845652 | 3.552768e-59 | 5.962259e-56 |
| MsG0280011120.01 | MsG0680034061.01 | -0.806736 | 7.115643e-50 | 3.891825e-47 |
| MsG0280011120.01 | MsG0780036813.01 | -0.811166 | 8.021690e-51 | 4.929792e-48 |
| MsG0280011120.01 | MsG0780038495.01 | -0.805692 | 1.180594e-49 | 6.287197e-47 |
| MsG0280011120.01 | MsG0780038640.01 | -0.800230 | 1.588832e-48 | 7.358954e-46 |
| MsG0280011120.01 | MsG0780038645.01 | -0.824572 | 7.508177e-54 | 6.676510e-51 |
| MsG0280011120.01 | MsG0780039622.01 | 0.807813 | 4.207478e-50 | 2.366489e-47 |
| MsG0280011120.01 | MsG0780039841.01 | -0.811346 | 7.330659e-51 | 4.526424e-48 |
| MsG0280011120.01 | MsG0780039950.01 | -0.804541 | 2.055816e-49 | 1.062783e-46 |
| MsG0280011120.01 | MsG0780040445.01 | -0.804695 | 1.909516e-49 | 9.911140e-47 |
| MsG0280011120.01 | MsG0780040699.01 | 0.810631 | 1.047365e-50 | 6.345893e-48 |
| MsG0280011120.01 | MsG0780040861.01 | -0.835293 | 1.825409e-56 | 2.222825e-53 |
| MsG0280011120.01 | MsG0780041294.01 | -0.815667 | 8.218887e-52 | 5.702428e-49 |
| MsG0280011120.01 | MsG0780041295.01 | -0.816054 | 6.739459e-52 | 4.725841e-49 |
| MsG0280011120.01 | MsG0780041559.01 | -0.802085 | 6.631327e-49 | 3.219304e-46 |
| MsG0280011120.01 | MsG0780041656.01 | -0.821806 | 3.319884e-53 | 2.729139e-50 |
| MsG0280011120.01 | MsG0880041985.01 | -0.810515 | 1.109492e-50 | 6.701409e-48 |
| MsG0280011120.01 | MsG0880042294.01 | -0.813828 | 2.100308e-51 | 1.386158e-48 |
| MsG0280011120.01 | MsG0880042314.01 | -0.821717 | 3.480319e-53 | 2.853799e-50 |
| MsG0280011120.01 | MsG0880042404.01 | -0.814859 | 1.243079e-51 | 8.436005e-49 |
| MsG0280011120.01 | MsG0880045631.01 | -0.809873 | 1.525683e-50 | 9.061567e-48 |
| MsG0280011120.01 | MsG0880046285.01 | -0.832190 | 1.088762e-55 | 1.207972e-52 |
| MsG0280011120.01 | MsG0880046321.01 | -0.818031 | 2.422935e-52 | 1.793388e-49 |
| MsG0280011120.01 | MsG0880046328.01 | -0.868610 | 5.746029e-66 | 2.091676e-62 |
| MsG0280011120.01 | MsG0880046933.01 | -0.814400 | 1.570614e-51 | 1.052829e-48 |
| MsG0280011120.01 | MsG0880047038.01 | -0.810557 | 1.086338e-50 | 6.569044e-48 |
| MsG0280011120.01 | MsG0880047116.01 | -0.844070 | 9.489527e-59 | 1.514515e-55 |
| MsG0280011120.01 | MsG0880047360.01 | 0.816073 | 6.674302e-52 | 4.682407e-49 |
| MsG0280011120.01 | MsG0880047448.01 | -0.842687 | 2.221450e-58 | 3.394340e-55 |
| MsG0280011120.01 | MsG0880047607.01 | -0.839422 | 1.600002e-57 | 2.208552e-54 |
| MsG0280011120.01 | MsG0880047608.01 | -0.824104 | 9.670055e-54 | 8.483986e-51 |
| MsG0280006595.01 | MsG0280011120.01 | -0.801229 | 9.937627e-49 | 4.720850e-46 |
| MsG0280007222.01 | MsG0280011120.01 | -0.824198 | 9.190711e-54 | 8.085065e-51 |
| MsG0280007609.01 | MsG0280011120.01 | -0.824560 | 7.554460e-54 | 6.715268e-51 |
| MsG0280009565.01 | MsG0280011120.01 | 0.813934 | 1.990450e-51 | 1.317390e-48 |
| MsG0280010275.01 | MsG0280011120.01 | 0.821560 | 3.783631e-53 | 3.088774e-50 |
| MsG0280010276.01 | MsG0280011120.01 | 0.834505 | 2.883587e-56 | 3.429114e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011120.01.T01 | MTR_2g099090 | 93.182 | 44 | 3 | 0 | 86 | 129 | 239 | 282 | 3.05e-23 | 92.8 |
| MsG0280011120.01.T01 | MTR_2g099090 | 93.182 | 44 | 3 | 0 | 86 | 129 | 223 | 266 | 3.31e-23 | 92.4 |
| MsG0280011120.01.T01 | MTR_4g068100 | 72.727 | 44 | 12 | 0 | 86 | 129 | 163 | 206 | 8.00e-17 | 74.7 |
| MsG0280011120.01.T01 | MTR_4g068100 | 72.727 | 44 | 12 | 0 | 86 | 129 | 225 | 268 | 1.19e-16 | 74.7 |
| MsG0280011120.01.T01 | MTR_4g068100 | 72.727 | 44 | 12 | 0 | 86 | 129 | 225 | 268 | 1.46e-16 | 74.7 |
| MsG0280011120.01.T01 | MTR_4g068100 | 72.727 | 44 | 12 | 0 | 86 | 129 | 233 | 276 | 1.47e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011120.01.T01 | AT2G31350 | 70.455 | 44 | 13 | 0 | 86 | 129 | 234 | 277 | 9.47e-15 | 69.7 |
| MsG0280011120.01.T01 | AT2G31350 | 70.455 | 44 | 13 | 0 | 86 | 129 | 233 | 276 | 9.60e-15 | 69.7 |
| MsG0280011120.01.T01 | AT1G06130 | 61.364 | 44 | 17 | 0 | 86 | 129 | 238 | 281 | 1.13e-12 | 63.9 |
| MsG0280011120.01.T01 | AT1G06130 | 61.364 | 44 | 17 | 0 | 86 | 129 | 239 | 282 | 1.14e-12 | 63.9 |
Find 45 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTCTCATGTTGCATTAC+AGG | 0.131265 | 2:-79772268 | MsG0280011120.01.T01:intron |
| GGCTTGCCCACGGTGAGTTT+TGG | 0.284331 | 2:-79770999 | MsG0280011120.01.T01:CDS |
| ACATCCCACATCTTCAATTA+TGG | 0.301100 | 2:-79771299 | MsG0280011120.01.T01:CDS |
| GAGAAGATTGCATCTGTAAC+AGG | 0.316777 | 2:+79771265 | None:intergenic |
| GGCCACATCACTTCTACTTC+CGG | 0.365579 | 2:-79772036 | MsG0280011120.01.T01:CDS |
| GATCGAAGTTCCTTGTTTCC+AGG | 0.387556 | 2:+79771056 | None:intergenic |
| GCCACATCACTTCTACTTCC+GGG | 0.396390 | 2:-79772035 | MsG0280011120.01.T01:CDS |
| TCACTTCTACTTCCGGGATC+GGG | 0.417247 | 2:-79772029 | MsG0280011120.01.T01:CDS |
| TTACAGATGCAATCTTCTCT+TGG | 0.426089 | 2:-79771261 | MsG0280011120.01.T01:CDS |
| TCATGCGGCAAACTCTTTGA+AGG | 0.453311 | 2:-79771973 | MsG0280011120.01.T01:CDS |
| ATCACTTCTACTTCCGGGAT+CGG | 0.463071 | 2:-79772030 | MsG0280011120.01.T01:CDS |
| ACAGTATATATTGTATCGTC+TGG | 0.465841 | 2:+79771222 | None:intergenic |
| GTGGCTTCCCTTCGAAGTAA+AGG | 0.472139 | 2:-79771020 | MsG0280011120.01.T01:CDS |
| GTTGTCAAGTCAGTTATACT+TGG | 0.473032 | 2:-79771333 | MsG0280011120.01.T01:intron |
| TTCGCATTGAGGCTCGAACC+TGG | 0.481254 | 2:-79771074 | MsG0280011120.01.T01:CDS |
| ACCTGTAATGCAACATGAGA+AGG | 0.489390 | 2:+79772267 | None:intergenic |
| TTATGCCTGGTTATGGCAAA+GGG | 0.504635 | 2:-79772306 | None:intergenic |
| ATTATGCCTGGTTATGGCAA+AGG | 0.510014 | 2:-79772307 | None:intergenic |
| ACTCTCCATAATTGAAGATG+TGG | 0.526987 | 2:+79771294 | None:intergenic |
| AAGGAACTTCGATCCTATGC+TGG | 0.529395 | 2:-79771047 | MsG0280011120.01.T01:CDS |
| GGGCAAGCCTTTACTTCGAA+GGG | 0.545894 | 2:+79771013 | None:intergenic |
| GGAAGCCACGTGGCCAGCAT+AGG | 0.547492 | 2:+79771034 | None:intergenic |
| TGGGCAAGCCTTTACTTCGA+AGG | 0.550848 | 2:+79771012 | None:intergenic |
| CACTTCTACTTCCGGGATCG+GGG | 0.561880 | 2:-79772028 | MsG0280011120.01.T01:CDS |
| ACTCTTTGAAGGAACCCCTC+AGG | 0.563265 | 2:-79771962 | MsG0280011120.01.T01:CDS |
| AGGTAAAACCAACCTCCTGA+GGG | 0.580185 | 2:+79771947 | None:intergenic |
| CAGGTAAAACCAACCTCCTG+AGG | 0.581515 | 2:+79771946 | None:intergenic |
| CTCTCCATAATTGAAGATGT+GGG | 0.586910 | 2:+79771295 | None:intergenic |
| GAGGCTCGAACCTGGAAACA+AGG | 0.587160 | 2:-79771066 | MsG0280011120.01.T01:CDS |
| CCTGTAATGCAACATGAGAA+GGG | 0.602438 | 2:+79772268 | None:intergenic |
| CTTTGAAGGAACCCCTCAGG+AGG | 0.623384 | 2:-79771959 | MsG0280011120.01.T01:intron |
| TCCCGGAAGTAGAAGTGATG+TGG | 0.630241 | 2:+79772034 | None:intergenic |
| AGAAGATTGCATCTGTAACA+GGG | 0.641756 | 2:+79771266 | None:intergenic |
| ATAATACGGACTTCGCATTG+AGG | 0.642456 | 2:-79771085 | MsG0280011120.01.T01:CDS |
| CCAATTCCAAAACTCACCGT+GGG | 0.643980 | 2:+79770993 | None:intergenic |
| GCCAATTCCAAAACTCACCG+TGG | 0.646189 | 2:+79770992 | None:intergenic |
| TCGAAGTAAAGGCTTGCCCA+CGG | 0.654918 | 2:-79771009 | MsG0280011120.01.T01:CDS |
| AGACGATACAATATATACTG+TGG | 0.659925 | 2:-79771220 | MsG0280011120.01.T01:CDS |
| ACTTTGTTCAGCTTGTCATG+CGG | 0.663144 | 2:-79771988 | MsG0280011120.01.T01:CDS |
| CTGTGGACACGAGTACACAT+TGG | 0.683875 | 2:-79771203 | MsG0280011120.01.T01:intron |
| TCGATCCTATGCTGGCCACG+TGG | 0.686304 | 2:-79771039 | MsG0280011120.01.T01:CDS |
| TACTTCGAAGGGAAGCCACG+TGG | 0.689024 | 2:+79771024 | None:intergenic |
| ACTACTCATAAAGAATAACA+AGG | 0.704151 | 2:+79770967 | None:intergenic |
| GGTAAAACCAACCTCCTGAG+GGG | 0.722369 | 2:+79771948 | None:intergenic |
| AGATTGCATCTGTAACAGGG+AGG | 0.764846 | 2:+79771269 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATGAGCATAATTTTTA+GGG | - | Chr2:79771512-79771531 | MsG0280011120.01.T01:intron | 15.0% |
| !! | ATAAAAATACTGAGTTCATT+CGG | - | Chr2:79771750-79771769 | MsG0280011120.01.T01:intron | 20.0% |
| !! | ATTATGCTCATTAAAGATAT+TGG | + | Chr2:79771507-79771526 | None:intergenic | 20.0% |
| !!! | CTTTAATGAGCATAATTTTT+AGG | - | Chr2:79771511-79771530 | MsG0280011120.01.T01:intron | 20.0% |
| !!! | TGTATTTTTGCAGAATAATA+CGG | - | Chr2:79772163-79772182 | MsG0280011120.01.T01:intron | 20.0% |
| ! | ATTTACTTGCATTTACAACT+AGG | + | Chr2:79771901-79771920 | None:intergenic | 25.0% |
| ! | TGTTTATTTATACTGTAAGC+AGG | - | Chr2:79771205-79771224 | MsG0280011120.01.T01:CDS | 25.0% |
| AAAATGTTATTGCTGATGCA+AGG | - | Chr2:79771875-79771894 | MsG0280011120.01.T01:intron | 30.0% | |
| AAATAAAGCAAAGAACACTG+AGG | + | Chr2:79772105-79772124 | None:intergenic | 30.0% | |
| ACAGTATATATTGTATCGTC+TGG | + | Chr2:79772043-79772062 | None:intergenic | 30.0% | |
| AGACGATACAATATATACTG+TGG | - | Chr2:79772042-79772061 | MsG0280011120.01.T01:intron | 30.0% | |
| CATTGATATCCATTGAATGA+CGG | - | Chr2:79771054-79771073 | MsG0280011120.01.T01:CDS | 30.0% | |
| GGTTTCACATAATGCAAATA+AGG | + | Chr2:79771154-79771173 | None:intergenic | 30.0% | |
| TATGTATGTCGAAAAATGCT+TGG | - | Chr2:79771822-79771841 | MsG0280011120.01.T01:intron | 30.0% | |
| TTTCAAATTTCAAGGACTTC+TGG | + | Chr2:79771427-79771446 | None:intergenic | 30.0% | |
| ! | ATACAAAGTACTAGAGTCAA+TGG | + | Chr2:79772148-79772167 | None:intergenic | 30.0% |
| !!! | CATAATTTTTAGGGCTTGTT+GGG | - | Chr2:79771521-79771540 | MsG0280011120.01.T01:intron | 30.0% |
| AAAAAAGACAAGTTAGTGCC+AGG | + | Chr2:79771338-79771357 | None:intergenic | 35.0% | |
| AATTTGAAAATACCCGCACA+AGG | - | Chr2:79771438-79771457 | MsG0280011120.01.T01:intron | 35.0% | |
| ACATCCCACATCTTCAATTA+TGG | - | Chr2:79771963-79771982 | MsG0280011120.01.T01:CDS | 35.0% | |
| ACTCTCCATAATTGAAGATG+TGG | + | Chr2:79771971-79771990 | None:intergenic | 35.0% | |
| AGAAGATTGCATCTGTAACA+GGG | + | Chr2:79771999-79772018 | None:intergenic | 35.0% | |
| ATTCAATGGATATCAATGCC+AGG | + | Chr2:79771052-79771071 | None:intergenic | 35.0% | |
| ATTTAAATTGCAGCCAAACG+AGG | - | Chr2:79771469-79771488 | MsG0280011120.01.T01:intron | 35.0% | |
| CGCTGTAATAATATGAGAGT+GGG | - | Chr2:79771545-79771564 | MsG0280011120.01.T01:intron | 35.0% | |
| CTCGTTGATATGTCTTCTTA+AGG | - | Chr2:79771784-79771803 | MsG0280011120.01.T01:intron | 35.0% | |
| CTCTCCATAATTGAAGATGT+GGG | + | Chr2:79771970-79771989 | None:intergenic | 35.0% | |
| GTTGTCAAGTCAGTTATACT+TGG | - | Chr2:79771929-79771948 | MsG0280011120.01.T01:intron | 35.0% | |
| TAAATCACAAGTTCCTTGTG+CGG | + | Chr2:79771454-79771473 | None:intergenic | 35.0% | |
| TACACTAAGATTGCAGACTT+GGG | + | Chr2:79771625-79771644 | None:intergenic | 35.0% | |
| TCGCTGTAATAATATGAGAG+TGG | - | Chr2:79771544-79771563 | MsG0280011120.01.T01:intron | 35.0% | |
| TTACAGATGCAATCTTCTCT+TGG | - | Chr2:79772001-79772020 | MsG0280011120.01.T01:CDS | 35.0% | |
| ! | GCGGGTATTTTCAAATTTCA+AGG | + | Chr2:79771435-79771454 | None:intergenic | 35.0% |
| !!! | GCATAATTTTTAGGGCTTGT+TGG | - | Chr2:79771520-79771539 | MsG0280011120.01.T01:intron | 35.0% |
| AAATCACAAGTTCCTTGTGC+GGG | + | Chr2:79771453-79771472 | None:intergenic | 40.0% | |
| AAGTACTAGAGTCAATGGCA+CGG | + | Chr2:79772143-79772162 | None:intergenic | 40.0% | |
| AATTTCAAGGACTTCTGGCA+AGG | + | Chr2:79771422-79771441 | None:intergenic | 40.0% | |
| ACACTAAGATTGCAGACTTG+GGG | + | Chr2:79771624-79771643 | None:intergenic | 40.0% | |
| ACCTGTAATGCAACATGAGA+AGG | + | Chr2:79770998-79771017 | None:intergenic | 40.0% | |
| ACTTTGTTCAGCTTGTCATG+CGG | - | Chr2:79771274-79771293 | MsG0280011120.01.T01:CDS | 40.0% | |
| ATAATACGGACTTCGCATTG+AGG | - | Chr2:79772177-79772196 | MsG0280011120.01.T01:intron | 40.0% | |
| ATTTCAAGGACTTCTGGCAA+GGG | + | Chr2:79771421-79771440 | None:intergenic | 40.0% | |
| CACTTATCACCGTCATTCAA+TGG | + | Chr2:79771066-79771085 | None:intergenic | 40.0% | |
| CATGTTGCATTACAGGTGAT+TGG | - | Chr2:79771001-79771020 | MsG0280011120.01.T01:CDS | 40.0% | |
| CATTGAATGACGGTGATAAG+TGG | - | Chr2:79771064-79771083 | MsG0280011120.01.T01:CDS | 40.0% | |
| CCTGTAATGCAACATGAGAA+GGG | + | Chr2:79770997-79771016 | None:intergenic | 40.0% | |
| GAGAAGATTGCATCTGTAAC+AGG | + | Chr2:79772000-79772019 | None:intergenic | 40.0% | |
| GTACACTAAGATTGCAGACT+TGG | + | Chr2:79771626-79771645 | None:intergenic | 40.0% | |
| TGCAATCTTAGTGTACGAGA+AGG | - | Chr2:79771630-79771649 | MsG0280011120.01.T01:intron | 40.0% | |
| ! | CACGTGTATGAAGTGTTCAA+TGG | - | Chr2:79771677-79771696 | MsG0280011120.01.T01:intron | 40.0% |
| ! | TCATACACGTGCTGATCAAA+GGG | + | Chr2:79771668-79771687 | None:intergenic | 40.0% |
| ! | TGTGAAACCTTCTTGTTGTG+TGG | - | Chr2:79771165-79771184 | MsG0280011120.01.T01:intron | 40.0% |
| ! | TTCATACACGTGCTGATCAA+AGG | + | Chr2:79771669-79771688 | None:intergenic | 40.0% |
| AAGGAACTTCGATCCTATGC+TGG | - | Chr2:79772215-79772234 | MsG0280011120.01.T01:intron | 45.0% | |
| ACCGACAACAAAAGGATTCC+TGG | - | Chr2:79771031-79771050 | MsG0280011120.01.T01:CDS | 45.0% | |
| AGAAGAGCCACACAACAAGA+AGG | + | Chr2:79771175-79771194 | None:intergenic | 45.0% | |
| AGAGTTTGAGTGTAGTGCGA+TGG | - | Chr2:79771577-79771596 | MsG0280011120.01.T01:intron | 45.0% | |
| AGATTGCATCTGTAACAGGG+AGG | + | Chr2:79771996-79772015 | None:intergenic | 45.0% | |
| AGGTAAAACCAACCTCCTGA+GGG | + | Chr2:79771318-79771337 | None:intergenic | 45.0% | |
| AGTCAATGGCACGGTACTTA+GGG | + | Chr2:79772134-79772153 | None:intergenic | 45.0% | |
| ATCACTTCTACTTCCGGGAT+CGG | - | Chr2:79771232-79771251 | MsG0280011120.01.T01:CDS | 45.0% | |
| CACTAAGATTGCAGACTTGG+GGG | + | Chr2:79771623-79771642 | None:intergenic | 45.0% | |
| CCAATTCCAAAACTCACCGT+GGG | + | Chr2:79772272-79772291 | None:intergenic | 45.0% | |
| CCCTTCTCATGTTGCATTAC+AGG | - | Chr2:79770994-79771013 | MsG0280011120.01.T01:CDS | 45.0% | |
| GGTGATAAGTGGATGTTTGC+TGG | - | Chr2:79771075-79771094 | MsG0280011120.01.T01:CDS | 45.0% | |
| GTTCAGCAACCGACAACAAA+AGG | - | Chr2:79771023-79771042 | MsG0280011120.01.T01:CDS | 45.0% | |
| TCATGCGGCAAACTCTTTGA+AGG | - | Chr2:79771289-79771308 | MsG0280011120.01.T01:CDS | 45.0% | |
| TGTAAAAATTGCCCCGATCC+CGG | + | Chr2:79771248-79771267 | None:intergenic | 45.0% | |
| TGTCCATTACTTGCACCTCA+TGG | + | Chr2:79771101-79771120 | None:intergenic | 45.0% | |
| ! | CATACACGTGCTGATCAAAG+GGG | + | Chr2:79771667-79771686 | None:intergenic | 45.0% |
| ! | GATCGAAGTTCCTTGTTTCC+AGG | + | Chr2:79772209-79772228 | None:intergenic | 45.0% |
| !! | GCCAGGAATCCTTTTGTTGT+CGG | + | Chr2:79771035-79771054 | None:intergenic | 45.0% |
| CAGGTAAAACCAACCTCCTG+AGG | + | Chr2:79771319-79771338 | None:intergenic | 50.0% | |
| CTGTGGACACGAGTACACAT+TGG | - | Chr2:79772059-79772078 | MsG0280011120.01.T01:intron | 50.0% | |
| GAGTCAATGGCACGGTACTT+AGG | + | Chr2:79772135-79772154 | None:intergenic | 50.0% | |
| GCCAATTCCAAAACTCACCG+TGG | + | Chr2:79772273-79772292 | None:intergenic | 50.0% | |
| GCCACATCACTTCTACTTCC+GGG | - | Chr2:79771227-79771246 | MsG0280011120.01.T01:CDS | 50.0% | |
| GGCCACATCACTTCTACTTC+CGG | - | Chr2:79771226-79771245 | MsG0280011120.01.T01:CDS | 50.0% | |
| GGGCAAGCCTTTACTTCGAA+GGG | + | Chr2:79772252-79772271 | None:intergenic | 50.0% | |
| GGTAAAACCAACCTCCTGAG+GGG | + | Chr2:79771317-79771336 | None:intergenic | 50.0% | |
| GTCACCACAAAGTCCTCGTT+TGG | + | Chr2:79771485-79771504 | None:intergenic | 50.0% | |
| GTGGCTTCCCTTCGAAGTAA+AGG | - | Chr2:79772242-79772261 | MsG0280011120.01.T01:intron | 50.0% | |
| TCACTTCTACTTCCGGGATC+GGG | - | Chr2:79771233-79771252 | MsG0280011120.01.T01:CDS | 50.0% | |
| TCCCGGAAGTAGAAGTGATG+TGG | + | Chr2:79771231-79771250 | None:intergenic | 50.0% | |
| TCGAAGTAAAGGCTTGCCCA+CGG | - | Chr2:79772253-79772272 | MsG0280011120.01.T01:intron | 50.0% | |
| TGGCCATGAGGTGCAAGTAA+TGG | - | Chr2:79771095-79771114 | MsG0280011120.01.T01:intron | 50.0% | |
| TGGGCAAGCCTTTACTTCGA+AGG | + | Chr2:79772253-79772272 | None:intergenic | 50.0% | |
| ! | ACTCTTTGAAGGAACCCCTC+AGG | - | Chr2:79771300-79771319 | MsG0280011120.01.T01:CDS | 50.0% |
| ! | GGGATCGGGGCAATTTTTAC+AGG | - | Chr2:79771247-79771266 | MsG0280011120.01.T01:CDS | 50.0% |
| !! | GTGCAAGTAATGGACACACC+TGG | - | Chr2:79771105-79771124 | MsG0280011120.01.T01:intron | 50.0% |
| !!! | CCCACGGTGAGTTTTGGAAT+TGG | - | Chr2:79772269-79772288 | MsG0280011120.01.T01:CDS | 50.0% |
| !!! | CTCAGGAGGTTGGTTTTACC+TGG | - | Chr2:79771317-79771336 | MsG0280011120.01.T01:CDS | 50.0% |
| ATGTGACCTCGAGTGTGACC+AGG | + | Chr2:79771126-79771145 | None:intergenic | 55.0% | |
| CACTTCTACTTCCGGGATCG+GGG | - | Chr2:79771234-79771253 | MsG0280011120.01.T01:CDS | 55.0% | |
| GAGGCTCGAACCTGGAAACA+AGG | - | Chr2:79772196-79772215 | MsG0280011120.01.T01:intron | 55.0% | |
| GCAGCCAAACGAGGACTTTG+TGG | - | Chr2:79771478-79771497 | MsG0280011120.01.T01:intron | 55.0% | |
| TACTTCGAAGGGAAGCCACG+TGG | + | Chr2:79772241-79772260 | None:intergenic | 55.0% | |
| TTCGCATTGAGGCTCGAACC+TGG | - | Chr2:79772188-79772207 | MsG0280011120.01.T01:intron | 55.0% | |
| ! | CTTTGAAGGAACCCCTCAGG+AGG | - | Chr2:79771303-79771322 | MsG0280011120.01.T01:CDS | 55.0% |
| ! | GTGGATGTTTGCTGGCCATG+AGG | - | Chr2:79771083-79771102 | MsG0280011120.01.T01:CDS | 55.0% |
| GAAGGAACCCCTCAGGAGGT+TGG | - | Chr2:79771307-79771326 | MsG0280011120.01.T01:CDS | 60.0% | |
| GACACACCTGGTCACACTCG+AGG | - | Chr2:79771117-79771136 | MsG0280011120.01.T01:intron | 60.0% | |
| TCGATCCTATGCTGGCCACG+TGG | - | Chr2:79772223-79772242 | MsG0280011120.01.T01:intron | 60.0% | |
| ! | GGCTTGCCCACGGTGAGTTT+TGG | - | Chr2:79772263-79772282 | MsG0280011120.01.T01:intron | 60.0% |
| GGAAGCCACGTGGCCAGCAT+AGG | + | Chr2:79772231-79772250 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 79770968 | 79772316 | 79770968 | ID=MsG0280011120.01;Name=MsG0280011120.01 |
| Chr2 | mRNA | 79770968 | 79772316 | 79770968 | ID=MsG0280011120.01.T01;Parent=MsG0280011120.01;Name=MsG0280011120.01.T01;_AED=0.47;_eAED=0.55;_QI=0|0.33|0.25|1|0.66|0.75|4|0|141 |
| Chr2 | exon | 79772269 | 79772316 | 79772269 | ID=MsG0280011120.01.T01:exon:10116;Parent=MsG0280011120.01.T01 |
| Chr2 | exon | 79771960 | 79772057 | 79771960 | ID=MsG0280011120.01.T01:exon:10115;Parent=MsG0280011120.01.T01 |
| Chr2 | exon | 79771204 | 79771342 | 79771204 | ID=MsG0280011120.01.T01:exon:10114;Parent=MsG0280011120.01.T01 |
| Chr2 | exon | 79770968 | 79771108 | 79770968 | ID=MsG0280011120.01.T01:exon:10113;Parent=MsG0280011120.01.T01 |
| Chr2 | CDS | 79772269 | 79772316 | 79772269 | ID=MsG0280011120.01.T01:cds;Parent=MsG0280011120.01.T01 |
| Chr2 | CDS | 79771960 | 79772057 | 79771960 | ID=MsG0280011120.01.T01:cds;Parent=MsG0280011120.01.T01 |
| Chr2 | CDS | 79771204 | 79771342 | 79771204 | ID=MsG0280011120.01.T01:cds;Parent=MsG0280011120.01.T01 |
| Chr2 | CDS | 79770968 | 79771108 | 79770968 | ID=MsG0280011120.01.T01:cds;Parent=MsG0280011120.01.T01 |
| Gene Sequence |
| Protein sequence |
