Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016326.01.T01 | XP_003602005.1 | 98.684 | 152 | 2 | 0 | 1 | 152 | 1 | 152 | 2.37E-107 | 312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016326.01.T01 | O65657 | 70.886 | 158 | 40 | 3 | 1 | 152 | 1 | 158 | 4.41E-71 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016326.01.T01 | G7J4D3 | 98.684 | 152 | 2 | 0 | 1 | 152 | 1 | 152 | 1.13e-107 | 312 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380011617.01 | MsG0380016326.01 | 0.804976 | 1.668264e-49 | 8.721978e-47 |
| MsG0380013176.01 | MsG0380016326.01 | 0.809374 | 1.953133e-50 | 1.144821e-47 |
| MsG0380014537.01 | MsG0380016326.01 | 0.804179 | 2.445987e-49 | 1.252776e-46 |
| MsG0380016321.01 | MsG0380016326.01 | 0.902908 | 5.989097e-79 | 8.666751e-75 |
| MsG0380016326.01 | MsG0480020739.01 | 0.824124 | 9.567074e-54 | 8.398481e-51 |
| MsG0380016326.01 | MsG0480021447.01 | 0.805293 | 1.431572e-49 | 7.545652e-47 |
| MsG0380016326.01 | MsG0480023463.01 | 0.823184 | 1.587936e-53 | 1.357494e-50 |
| MsG0380016326.01 | MsG0580029640.01 | 0.823747 | 1.172934e-53 | 1.018912e-50 |
| MsG0380016326.01 | MsG0680031506.01 | 0.804939 | 1.698084e-49 | 8.869802e-47 |
| MsG0380016326.01 | MsG0780038401.01 | 0.832434 | 9.473191e-56 | 1.058700e-52 |
| MsG0380016326.01 | MsG0780039257.01 | 0.815751 | 7.872821e-52 | 5.475042e-49 |
| MsG0380016326.01 | MsG0780039866.01 | 0.801375 | 9.276798e-49 | 4.423189e-46 |
| MsG0380016326.01 | MsG0880042939.01 | 0.812065 | 5.113031e-51 | 3.218258e-48 |
| MsG0380016326.01 | MsG0880045372.01 | 0.807948 | 3.939482e-50 | 2.223539e-47 |
| MsG0280007529.01 | MsG0380016326.01 | 0.800315 | 1.526697e-48 | 7.086845e-46 |
| MsG0280009514.01 | MsG0380016326.01 | 0.805709 | 1.171080e-49 | 6.239375e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016326.01.T01 | MTR_3g087770 | 98.684 | 152 | 2 | 0 | 1 | 152 | 1 | 152 | 2.87e-111 | 312 |
| MsG0380016326.01.T01 | MTR_8g091420 | 81.935 | 155 | 23 | 3 | 1 | 152 | 1 | 153 | 1.80e-79 | 232 |
| MsG0380016326.01.T01 | MTR_1g030630 | 56.376 | 149 | 61 | 3 | 5 | 152 | 2 | 147 | 6.19e-56 | 172 |
| MsG0380016326.01.T01 | MTR_3g073670 | 59.091 | 154 | 56 | 3 | 1 | 152 | 1 | 149 | 1.60e-55 | 171 |
| MsG0380016326.01.T01 | MTR_5g022620 | 55.128 | 156 | 62 | 4 | 5 | 152 | 2 | 157 | 7.97e-53 | 165 |
| MsG0380016326.01.T01 | MTR_3g117890 | 53.750 | 160 | 57 | 5 | 5 | 152 | 2 | 156 | 1.66e-52 | 164 |
| MsG0380016326.01.T01 | MTR_4g073040 | 54.194 | 155 | 64 | 4 | 5 | 152 | 2 | 156 | 6.23e-52 | 162 |
| MsG0380016326.01.T01 | MTR_6g003990 | 50.649 | 154 | 70 | 3 | 5 | 152 | 2 | 155 | 3.21e-51 | 160 |
| MsG0380016326.01.T01 | MTR_5g025150 | 52.027 | 148 | 67 | 1 | 5 | 152 | 2 | 145 | 6.43e-51 | 159 |
| MsG0380016326.01.T01 | MTR_7g083060 | 57.364 | 129 | 53 | 2 | 25 | 152 | 19 | 146 | 2.20e-47 | 150 |
| MsG0380016326.01.T01 | MTR_6g003990 | 53.390 | 118 | 52 | 2 | 38 | 152 | 1 | 118 | 3.59e-42 | 136 |
| MsG0380016326.01.T01 | MTR_5g055020 | 44.000 | 150 | 78 | 2 | 5 | 152 | 2 | 147 | 1.50e-40 | 133 |
| MsG0380016326.01.T01 | MTR_6g026890 | 39.456 | 147 | 77 | 4 | 17 | 152 | 3 | 148 | 2.21e-28 | 102 |
| MsG0380016326.01.T01 | MTR_1g078090 | 41.045 | 134 | 69 | 3 | 29 | 152 | 52 | 185 | 9.60e-28 | 102 |
| MsG0380016326.01.T01 | MTR_2g091235 | 35.135 | 148 | 66 | 5 | 29 | 152 | 1 | 142 | 4.98e-22 | 86.3 |
| MsG0380016326.01.T01 | MTR_6g045203 | 39.706 | 136 | 67 | 4 | 32 | 152 | 5 | 140 | 3.55e-18 | 76.3 |
| MsG0380016326.01.T01 | MTR_1g082650 | 53.731 | 67 | 31 | 0 | 28 | 94 | 8 | 74 | 4.43e-15 | 71.6 |
| MsG0380016326.01.T01 | MTR_1g107565 | 50.746 | 67 | 33 | 0 | 28 | 94 | 11 | 77 | 8.61e-15 | 70.5 |
| MsG0380016326.01.T01 | MTR_2g022250 | 47.761 | 67 | 35 | 0 | 28 | 94 | 8 | 74 | 7.08e-14 | 68.2 |
| MsG0380016326.01.T01 | MTR_1g092670 | 49.231 | 65 | 33 | 0 | 30 | 94 | 4 | 68 | 1.08e-13 | 62.8 |
| MsG0380016326.01.T01 | MTR_4g094238 | 38.824 | 85 | 49 | 2 | 29 | 113 | 1 | 82 | 1.29e-13 | 63.2 |
| MsG0380016326.01.T01 | MTR_7g013660 | 47.692 | 65 | 34 | 0 | 30 | 94 | 4 | 68 | 1.32e-13 | 63.9 |
| MsG0380016326.01.T01 | MTR_7g108560 | 49.231 | 65 | 33 | 0 | 30 | 94 | 22 | 86 | 1.34e-13 | 66.6 |
| MsG0380016326.01.T01 | MTR_4g117140 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 2.64e-13 | 66.6 |
| MsG0380016326.01.T01 | MTR_4g117220 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 2.92e-13 | 66.2 |
| MsG0380016326.01.T01 | MTR_7g113110 | 48.387 | 62 | 32 | 0 | 34 | 95 | 37 | 98 | 1.26e-12 | 64.3 |
| MsG0380016326.01.T01 | MTR_3g067750 | 46.875 | 64 | 34 | 0 | 30 | 93 | 12 | 75 | 5.01e-12 | 61.6 |
| MsG0380016326.01.T01 | MTR_4g119820 | 46.970 | 66 | 35 | 0 | 30 | 95 | 74 | 139 | 1.35e-11 | 61.2 |
| MsG0380016326.01.T01 | MTR_1g083310 | 44.776 | 67 | 36 | 1 | 30 | 95 | 15 | 81 | 2.45e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016326.01.T01 | AT4G39700 | 70.886 | 158 | 40 | 3 | 1 | 152 | 1 | 158 | 4.50e-72 | 213 |
| MsG0380016326.01.T01 | AT1G22990 | 56.579 | 152 | 61 | 3 | 5 | 152 | 2 | 152 | 6.59e-58 | 177 |
| MsG0380016326.01.T01 | AT1G71050 | 59.355 | 155 | 57 | 3 | 1 | 152 | 1 | 152 | 6.45e-56 | 172 |
| MsG0380016326.01.T01 | AT1G22990 | 55.034 | 149 | 63 | 3 | 5 | 152 | 2 | 147 | 5.97e-55 | 170 |
| MsG0380016326.01.T01 | AT4G38580 | 54.902 | 153 | 63 | 3 | 5 | 152 | 2 | 153 | 1.13e-54 | 169 |
| MsG0380016326.01.T01 | AT4G38580 | 54.902 | 153 | 63 | 3 | 5 | 152 | 2 | 153 | 1.13e-54 | 169 |
| MsG0380016326.01.T01 | AT4G08570 | 55.844 | 154 | 62 | 3 | 1 | 152 | 1 | 150 | 5.19e-54 | 167 |
| MsG0380016326.01.T01 | AT5G17450 | 50.667 | 150 | 70 | 4 | 5 | 152 | 2 | 149 | 3.60e-46 | 147 |
| MsG0380016326.01.T01 | AT5G66110 | 51.007 | 149 | 63 | 4 | 10 | 152 | 3 | 147 | 7.27e-45 | 144 |
| MsG0380016326.01.T01 | AT5G66110 | 51.007 | 149 | 63 | 4 | 10 | 152 | 3 | 147 | 7.27e-45 | 144 |
| MsG0380016326.01.T01 | AT4G35060 | 47.403 | 154 | 73 | 4 | 5 | 152 | 2 | 153 | 1.34e-43 | 141 |
| MsG0380016326.01.T01 | AT5G66110 | 52.893 | 121 | 51 | 3 | 38 | 152 | 1 | 121 | 5.49e-38 | 126 |
| MsG0380016326.01.T01 | AT5G17450 | 55.556 | 99 | 41 | 3 | 56 | 152 | 8 | 105 | 2.72e-31 | 108 |
| MsG0380016326.01.T01 | AT1G06330 | 38.961 | 154 | 60 | 5 | 29 | 152 | 1 | 150 | 1.12e-26 | 98.2 |
| MsG0380016326.01.T01 | AT3G56891 | 39.216 | 153 | 63 | 6 | 29 | 152 | 15 | 166 | 6.58e-25 | 94.4 |
| MsG0380016326.01.T01 | AT2G18196 | 35.862 | 145 | 83 | 4 | 18 | 152 | 34 | 178 | 1.57e-24 | 93.6 |
| MsG0380016326.01.T01 | AT4G10465 | 38.849 | 139 | 75 | 3 | 24 | 152 | 45 | 183 | 1.79e-23 | 90.9 |
| MsG0380016326.01.T01 | AT3G56891 | 38.194 | 144 | 59 | 6 | 38 | 152 | 1 | 143 | 2.52e-22 | 87.0 |
| MsG0380016326.01.T01 | AT1G29100 | 37.584 | 149 | 61 | 4 | 31 | 152 | 4 | 147 | 2.85e-21 | 84.3 |
| MsG0380016326.01.T01 | AT1G29100 | 36.986 | 146 | 60 | 4 | 34 | 152 | 1 | 141 | 5.55e-20 | 80.9 |
| MsG0380016326.01.T01 | AT2G18196 | 35.200 | 125 | 71 | 4 | 38 | 152 | 1 | 125 | 3.33e-19 | 78.6 |
| MsG0380016326.01.T01 | AT3G48970 | 38.686 | 137 | 69 | 4 | 31 | 152 | 2 | 138 | 7.36e-15 | 67.4 |
| MsG0380016326.01.T01 | AT3G48970 | 38.686 | 137 | 69 | 4 | 31 | 152 | 2 | 138 | 7.36e-15 | 67.4 |
| MsG0380016326.01.T01 | AT3G48970 | 38.686 | 137 | 69 | 4 | 31 | 152 | 4 | 140 | 7.87e-15 | 67.4 |
| MsG0380016326.01.T01 | AT1G66240 | 44.444 | 72 | 40 | 0 | 23 | 94 | 26 | 97 | 7.62e-14 | 63.9 |
| MsG0380016326.01.T01 | AT5G27690 | 48.387 | 62 | 32 | 0 | 34 | 95 | 34 | 95 | 1.42e-13 | 67.0 |
| MsG0380016326.01.T01 | AT3G06130 | 48.485 | 66 | 34 | 0 | 29 | 94 | 9 | 74 | 1.91e-13 | 67.0 |
| MsG0380016326.01.T01 | AT3G56240 | 50.000 | 66 | 33 | 0 | 30 | 95 | 3 | 68 | 3.02e-13 | 62.8 |
| MsG0380016326.01.T01 | AT3G56240 | 50.000 | 66 | 33 | 0 | 30 | 95 | 3 | 68 | 3.02e-13 | 62.8 |
| MsG0380016326.01.T01 | AT3G06130 | 47.761 | 67 | 35 | 0 | 28 | 94 | 8 | 74 | 3.56e-13 | 65.9 |
| MsG0380016326.01.T01 | AT5G19090 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 3.42e-12 | 63.5 |
| MsG0380016326.01.T01 | AT5G19090 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 3.42e-12 | 63.5 |
| MsG0380016326.01.T01 | AT5G19090 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 3.42e-12 | 63.5 |
| MsG0380016326.01.T01 | AT5G19090 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 4.22e-12 | 63.2 |
| MsG0380016326.01.T01 | AT5G19090 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 4.22e-12 | 63.2 |
| MsG0380016326.01.T01 | AT1G56210 | 49.231 | 65 | 33 | 0 | 34 | 98 | 44 | 108 | 4.91e-12 | 62.8 |
| MsG0380016326.01.T01 | AT1G23000 | 42.857 | 70 | 40 | 0 | 29 | 98 | 12 | 81 | 1.48e-11 | 61.2 |
| MsG0380016326.01.T01 | AT1G23000 | 42.857 | 70 | 40 | 0 | 29 | 98 | 72 | 141 | 1.50e-11 | 61.6 |
| MsG0380016326.01.T01 | AT5G37860 | 40.845 | 71 | 42 | 0 | 29 | 99 | 9 | 79 | 3.78e-11 | 59.7 |
Find 41 sgRNAs with CRISPR-Local
Find 54 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTATCATCATCTACATAA+TGG | 0.292404 | 3:-82035990 | None:intergenic |
| TACATAATGGAGCAGGCATT+TGG | 0.304332 | 3:-82035977 | None:intergenic |
| AGAGTACTTATCTGATCTAA+TGG | 0.306737 | 3:+82035281 | MsG0380016326.01.T01:CDS |
| TAAAATCAGTGGAGATAAAC+AGG | 0.372946 | 3:+82035711 | MsG0380016326.01.T01:CDS |
| TTGCGATGGTTGCGAACTTA+AGG | 0.383976 | 3:+82035377 | MsG0380016326.01.T01:CDS |
| ACCATGTTGTATGGCACATA+AGG | 0.433890 | 3:-82035824 | None:intergenic |
| AGCAAAGTCAACAGGAAAGA+AGG | 0.439458 | 3:+82035790 | MsG0380016326.01.T01:CDS |
| CAGGAAAGAAGGCAGAGATT+TGG | 0.440709 | 3:+82035801 | MsG0380016326.01.T01:CDS |
| ACATAATGGAGCAGGCATTT+GGG | 0.448683 | 3:-82035976 | None:intergenic |
| GGGGTATGTAGAGGCAAATA+AGG | 0.452605 | 3:+82035757 | MsG0380016326.01.T01:CDS |
| TCCTGGATATGTAAGGAGAT+TGG | 0.456785 | 3:+82035889 | MsG0380016326.01.T01:CDS |
| TCCAATCTCCTTACATATCC+AGG | 0.463407 | 3:-82035890 | None:intergenic |
| CTAAAGAAAGCAAAGTCAAC+AGG | 0.471841 | 3:+82035782 | MsG0380016326.01.T01:CDS |
| GAGTACTTATCTGATCTAAT+GGG | 0.482086 | 3:+82035282 | MsG0380016326.01.T01:CDS |
| AAAGCCCTCTCTTCAATGAA+TGG | 0.498175 | 3:+82035405 | MsG0380016326.01.T01:CDS |
| ATTACAGACCGTAGAGTTGA+AGG | 0.499504 | 3:+82035344 | MsG0380016326.01.T01:CDS |
| TATGACAAGAAGGCTCCTCC+TGG | 0.508900 | 3:+82035872 | MsG0380016326.01.T01:CDS |
| CGTAGAGTTGAAGGTGAGGA+TGG | 0.509056 | 3:+82035353 | MsG0380016326.01.T01:CDS |
| CTTACCATTCATTGAAGAGA+GGG | 0.529075 | 3:-82035409 | None:intergenic |
| ATATACACAGAAATGGGAGT+TGG | 0.529253 | 3:+82035249 | None:intergenic |
| AGGCTCCTCCTGGATATGTA+AGG | 0.531905 | 3:+82035882 | MsG0380016326.01.T01:CDS |
| GGAGCCTTCTTGTCATAAGA+AGG | 0.533318 | 3:-82035866 | None:intergenic |
| GGATGAGCCACCATGTTGTA+TGG | 0.533759 | 3:-82035833 | None:intergenic |
| TCATAAGAAGGAGCAGCGTA+TGG | 0.549598 | 3:-82035854 | None:intergenic |
| TACACAGAAATGGGAGTTGG+AGG | 0.552311 | 3:+82035252 | None:intergenic |
| CATCATCTACATAATGGAGC+AGG | 0.555456 | 3:-82035984 | None:intergenic |
| TGCTCCTTCTTATGACAAGA+AGG | 0.562724 | 3:+82035862 | MsG0380016326.01.T01:CDS |
| GTAAGGAGATTGGAGACCAC+TGG | 0.572647 | 3:+82035899 | MsG0380016326.01.T01:CDS |
| TTATCTGATCTAATGGGCAG+TGG | 0.573748 | 3:+82035288 | MsG0380016326.01.T01:CDS |
| CATCCTCACCTTCAACTCTA+CGG | 0.585179 | 3:-82035352 | None:intergenic |
| GACAGTAACGGGGTATGTAG+AGG | 0.602619 | 3:+82035748 | MsG0380016326.01.T01:CDS |
| ACTTACCATTCATTGAAGAG+AGG | 0.616934 | 3:-82035410 | None:intergenic |
| CATCACTAAACATGGTGGTG+AGG | 0.624282 | 3:-82035949 | None:intergenic |
| GCCTTATGTGCCATACAACA+TGG | 0.647674 | 3:+82035823 | MsG0380016326.01.T01:CDS |
| ATATGCTCTAACAGTTCCAG+TGG | 0.649114 | 3:-82035915 | None:intergenic |
| AAGGTGAGGATGGATTGCGA+TGG | 0.658836 | 3:+82035363 | MsG0380016326.01.T01:CDS |
| CTAAACATGGTGGTGAGGTG+TGG | 0.665051 | 3:-82035944 | None:intergenic |
| AGACCGTAGAGTTGAAGGTG+AGG | 0.688480 | 3:+82035349 | MsG0380016326.01.T01:CDS |
| TGATGCAGGAGTAAAATCAG+TGG | 0.694945 | 3:+82035700 | MsG0380016326.01.T01:intron |
| TTATGTGCCATACAACATGG+TGG | 0.751150 | 3:+82035826 | MsG0380016326.01.T01:CDS |
| AATCTCCTTACATATCCAGG+AGG | 0.766746 | 3:-82035887 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAGAAAGATAAATTAATAG+AGG | - | Chr3:82035445-82035464 | None:intergenic | 20.0% |
| !! | GAGAAAGATAAATTAATAGA+GGG | - | Chr3:82035444-82035463 | None:intergenic | 20.0% |
| ! | TCAAATTATAATTAGTGCGT+CGG | + | Chr3:82035555-82035574 | MsG0380016326.01.T01:intron | 25.0% |
| ACAACAAAAAGTGACAGTAA+CGG | + | Chr3:82035736-82035755 | MsG0380016326.01.T01:CDS | 30.0% | |
| GAGTACTTATCTGATCTAAT+GGG | + | Chr3:82035282-82035301 | MsG0380016326.01.T01:CDS | 30.0% | |
| TAAAATCAGTGGAGATAAAC+AGG | + | Chr3:82035711-82035730 | MsG0380016326.01.T01:CDS | 30.0% | |
| TATCTTTCTCTATATAGCAC+CGG | + | Chr3:82035454-82035473 | MsG0380016326.01.T01:intron | 30.0% | |
| ! | AGAGTACTTATCTGATCTAA+TGG | + | Chr3:82035281-82035300 | MsG0380016326.01.T01:CDS | 30.0% |
| ! | TCTTCTTCTTGATTTTCTGA+TGG | - | Chr3:82035320-82035339 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTGTGGTGATGC+AGG | + | Chr3:82035686-82035705 | MsG0380016326.01.T01:intron | 30.0% |
| AACAAAAAGTGACAGTAACG+GGG | + | Chr3:82035738-82035757 | MsG0380016326.01.T01:CDS | 35.0% | |
| ACTTACCATTCATTGAAGAG+AGG | - | Chr3:82035413-82035432 | None:intergenic | 35.0% | |
| CAACAAAAAGTGACAGTAAC+GGG | + | Chr3:82035737-82035756 | MsG0380016326.01.T01:CDS | 35.0% | |
| CTAAAGAAAGCAAAGTCAAC+AGG | + | Chr3:82035782-82035801 | MsG0380016326.01.T01:CDS | 35.0% | |
| CTTACCATTCATTGAAGAGA+GGG | - | Chr3:82035412-82035431 | None:intergenic | 35.0% | |
| GCTTGCTTGCATTATATGTA+TGG | + | Chr3:82035611-82035630 | MsG0380016326.01.T01:intron | 35.0% | |
| ! | GTTTTCATCACTAAACATGG+TGG | - | Chr3:82035957-82035976 | None:intergenic | 35.0% |
| ! | TCTTCTTGATTTTCTGATGG+TGG | - | Chr3:82035317-82035336 | None:intergenic | 35.0% |
| ! | TGGGTTTTCATCACTAAACA+TGG | - | Chr3:82035960-82035979 | None:intergenic | 35.0% |
| AAAGCCCTCTCTTCAATGAA+TGG | + | Chr3:82035405-82035424 | MsG0380016326.01.T01:CDS | 40.0% | |
| AATCTCCTTACATATCCAGG+AGG | - | Chr3:82035890-82035909 | None:intergenic | 40.0% | |
| ACCATGTTGTATGGCACATA+AGG | - | Chr3:82035827-82035846 | None:intergenic | 40.0% | |
| ACGTCATCAATATGAAGTGC+CGG | - | Chr3:82035476-82035495 | None:intergenic | 40.0% | |
| AGCAAAGTCAACAGGAAAGA+AGG | + | Chr3:82035790-82035809 | MsG0380016326.01.T01:CDS | 40.0% | |
| ATATGCTCTAACAGTTCCAG+TGG | - | Chr3:82035918-82035937 | None:intergenic | 40.0% | |
| ATTACAGACCGTAGAGTTGA+AGG | + | Chr3:82035344-82035363 | MsG0380016326.01.T01:CDS | 40.0% | |
| TCCAATCTCCTTACATATCC+AGG | - | Chr3:82035893-82035912 | None:intergenic | 40.0% | |
| TCCTGGATATGTAAGGAGAT+TGG | + | Chr3:82035889-82035908 | MsG0380016326.01.T01:CDS | 40.0% | |
| TGATGCAGGAGTAAAATCAG+TGG | + | Chr3:82035700-82035719 | MsG0380016326.01.T01:intron | 40.0% | |
| TGCTCCTTCTTATGACAAGA+AGG | + | Chr3:82035862-82035881 | MsG0380016326.01.T01:CDS | 40.0% | |
| TTATGTGCCATACAACATGG+TGG | + | Chr3:82035826-82035845 | MsG0380016326.01.T01:CDS | 40.0% | |
| ! | ACATAATGGAGCAGGCATTT+GGG | - | Chr3:82035979-82035998 | None:intergenic | 40.0% |
| ! | TACATAATGGAGCAGGCATT+TGG | - | Chr3:82035980-82035999 | None:intergenic | 40.0% |
| ! | TTATCTGATCTAATGGGCAG+TGG | + | Chr3:82035288-82035307 | MsG0380016326.01.T01:CDS | 40.0% |
| CAGGAAAGAAGGCAGAGATT+TGG | + | Chr3:82035801-82035820 | MsG0380016326.01.T01:CDS | 45.0% | |
| CATCCTCACCTTCAACTCTA+CGG | - | Chr3:82035355-82035374 | None:intergenic | 45.0% | |
| GCCTTATGTGCCATACAACA+TGG | + | Chr3:82035823-82035842 | MsG0380016326.01.T01:CDS | 45.0% | |
| GGAGCCTTCTTGTCATAAGA+AGG | - | Chr3:82035869-82035888 | None:intergenic | 45.0% | |
| GGGGTATGTAGAGGCAAATA+AGG | + | Chr3:82035757-82035776 | MsG0380016326.01.T01:CDS | 45.0% | |
| TCATAAGAAGGAGCAGCGTA+TGG | - | Chr3:82035857-82035876 | None:intergenic | 45.0% | |
| TTGCGATGGTTGCGAACTTA+AGG | + | Chr3:82035377-82035396 | MsG0380016326.01.T01:CDS | 45.0% | |
| ! | CATCACTAAACATGGTGGTG+AGG | - | Chr3:82035952-82035971 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTTTG+TGG | + | Chr3:82035677-82035696 | MsG0380016326.01.T01:intron | 5.0% |
| AGACCGTAGAGTTGAAGGTG+AGG | + | Chr3:82035349-82035368 | MsG0380016326.01.T01:CDS | 50.0% | |
| AGGCTCCTCCTGGATATGTA+AGG | + | Chr3:82035882-82035901 | MsG0380016326.01.T01:CDS | 50.0% | |
| CGTAGAGTTGAAGGTGAGGA+TGG | + | Chr3:82035353-82035372 | MsG0380016326.01.T01:CDS | 50.0% | |
| CGTCTGACATCACTGACACA+TGG | + | Chr3:82035502-82035521 | MsG0380016326.01.T01:intron | 50.0% | |
| GGATGAGCCACCATGTTGTA+TGG | - | Chr3:82035836-82035855 | None:intergenic | 50.0% | |
| GTAAGGAGATTGGAGACCAC+TGG | + | Chr3:82035899-82035918 | MsG0380016326.01.T01:CDS | 50.0% | |
| GTGTCAGTGATGTCAGACGT+TGG | - | Chr3:82035501-82035520 | None:intergenic | 50.0% | |
| TATGACAAGAAGGCTCCTCC+TGG | + | Chr3:82035872-82035891 | MsG0380016326.01.T01:CDS | 50.0% | |
| ! | CTAAACATGGTGGTGAGGTG+TGG | - | Chr3:82035947-82035966 | None:intergenic | 50.0% |
| ! | GACAGTAACGGGGTATGTAG+AGG | + | Chr3:82035748-82035767 | MsG0380016326.01.T01:CDS | 50.0% |
| !! | AAGGTGAGGATGGATTGCGA+TGG | + | Chr3:82035363-82035382 | MsG0380016326.01.T01:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 82035261 | 82036000 | 82035261 | ID=MsG0380016326.01;Name=MsG0380016326.01 |
| Chr3 | mRNA | 82035261 | 82036000 | 82035261 | ID=MsG0380016326.01.T01;Parent=MsG0380016326.01;Name=MsG0380016326.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|0.5|2|0|152 |
| Chr3 | exon | 82035261 | 82035426 | 82035261 | ID=MsG0380016326.01.T01:exon:11595;Parent=MsG0380016326.01.T01 |
| Chr3 | exon | 82035708 | 82036000 | 82035708 | ID=MsG0380016326.01.T01:exon:11596;Parent=MsG0380016326.01.T01 |
| Chr3 | CDS | 82035261 | 82035426 | 82035261 | ID=MsG0380016326.01.T01:cds;Parent=MsG0380016326.01.T01 |
| Chr3 | CDS | 82035708 | 82036000 | 82035708 | ID=MsG0380016326.01.T01:cds;Parent=MsG0380016326.01.T01 |
| Gene Sequence |
| Protein sequence |
