AlfalfaGEDB | MsG0180001829.01

M. sativa cultivar ZhongmuNo.1 / MsG0180001829.01

KEGG: K02985
GO: GO:0003723 GO:0003735 GO:0005840 GO:0006412 GO:0015935
PFAM: PF00189 PF07650

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001829.01.T01	XP_003590123.1	100	239	0	0	1	239	1	239	3.13E-173	486
MsG0180001829.01.T02	XP_003590123.1	100	239	0	0	1	239	1	239	3.13E-173	486

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001829.01.T01	Q9FJA6	88.841	233	26	0	1	233	1	233	2.07E-152	426
MsG0180001829.01.T02	Q9FJA6	88.841	233	26	0	1	233	1	233	2.07E-152	426

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001829.01.T01	B7FH64	100.000	239	0	0	1	239	1	239	1.49e-173	486
MsG0180001829.01.T02	B7FH64	100.000	239	0	0	1	239	1	239	1.49e-173	486

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048933.01	MsG0180001829.01	0.826638	2.430306e-54	2.292224e-51
MsG0180000096.01	MsG0180001829.01	0.889274	2.805938e-73	2.248440e-69
MsG0180000118.01	MsG0180001829.01	0.923679	1.930828e-89	7.832390e-85
MsG0180001169.01	MsG0180001829.01	0.863589	2.234155e-64	6.808469e-61
MsG0180001829.01	MsG0180001837.01	0.845953	2.943288e-59	4.987594e-56
MsG0180001829.01	MsG0180002738.01	0.820263	7.523398e-53	5.924017e-50
MsG0180001829.01	MsG0180003585.01	0.823690	1.209338e-53	1.048871e-50
MsG0180001829.01	MsG0180003897.01	0.918848	9.381893e-87	2.919559e-82
MsG0180001829.01	MsG0180004064.01	0.850937	1.229146e-60	2.447625e-57
MsG0180001829.01	MsG0180004503.01	0.873571	1.326666e-67	5.784959e-64
MsG0180001829.01	MsG0180004829.01	0.865748	4.714381e-65	1.550892e-61
MsG0180001829.01	MsG0180005384.01	0.848195	7.153871e-60	1.302383e-56
MsG0180001829.01	MsG0180005573.01	0.813605	2.351531e-51	1.542654e-48
MsG0180001829.01	MsG0280006301.01	0.805264	1.451769e-49	7.645981e-47
MsG0180001829.01	MsG0280006629.01	0.883845	3.176647e-71	2.047434e-67
MsG0180001829.01	MsG0280006747.01	0.918440	1.554203e-86	4.729801e-82
MsG0180001829.01	MsG0280007055.01	0.910486	1.774770e-82	3.633056e-78
MsG0180001829.01	MsG0280007084.01	0.832721	8.040234e-56	9.063323e-53
MsG0180001829.01	MsG0280007995.01	0.834225	3.389242e-56	3.996225e-53
MsG0180001829.01	MsG0280010203.01	0.883983	2.826823e-71	1.832142e-67
MsG0180001829.01	MsG0280010232.01	0.838108	3.497325e-57	4.637168e-54
MsG0180001829.01	MsG0380015446.01	0.884641	1.611684e-71	1.071714e-67
MsG0180001829.01	MsG0380015766.01	0.847723	9.655593e-60	1.731862e-56
MsG0180001829.01	MsG0380015857.01	0.914425	1.946476e-84	4.831738e-80
MsG0180001829.01	MsG0380016183.01	0.831817	1.346103e-55	1.477441e-52
MsG0180001829.01	MsG0380016653.01	0.863979	1.691060e-64	5.224114e-61
MsG0180001829.01	MsG0380016678.01	0.824350	8.466277e-54	7.479682e-51
MsG0180001829.01	MsG0380016732.01	0.858851	6.200127e-63	1.604834e-59
MsG0180001829.01	MsG0380016744.01	0.889471	2.350977e-73	1.899275e-69
MsG0180001829.01	MsG0380016760.01	0.849332	3.460192e-60	6.537910e-57
MsG0180001829.01	MsG0380016805.01	0.820061	8.366961e-53	6.552209e-50
MsG0180001829.01	MsG0380017119.01	0.804511	2.085902e-49	1.077463e-46
MsG0180001829.01	MsG0480018164.01	0.876543	1.284466e-68	6.251093e-65
MsG0180001829.01	MsG0480019165.01	0.876313	1.542719e-68	7.444140e-65
MsG0180001829.01	MsG0480020796.01	0.865307	6.491593e-65	2.102037e-61
MsG0180001829.01	MsG0480020911.01	0.855571	5.771782e-62	1.338369e-58
MsG0180001829.01	MsG0480021279.01	0.886659	2.821419e-72	2.033650e-68
MsG0180001829.01	MsG0480021417.01	0.891964	2.455111e-74	2.198522e-70
MsG0180001829.01	MsG0480022006.01	0.890444	9.802152e-74	8.242041e-70
MsG0180001829.01	MsG0480022041.01	0.815745	7.897124e-52	5.491118e-49
MsG0180001829.01	MsG0480022302.01	0.832764	7.845800e-56	8.855058e-53
MsG0180001829.01	MsG0480022789.01	0.819622	1.054485e-52	8.155866e-50
MsG0180001829.01	MsG0480022955.01	0.867431	1.375788e-65	4.802164e-62
MsG0180001829.01	MsG0480023380.01	0.893718	4.840521e-75	4.667157e-71
MsG0180001829.01	MsG0480023774.01	0.903663	2.748763e-79	4.108263e-75
MsG0180001829.01	MsG0480023931.01	0.879810	9.195730e-70	5.057938e-66
MsG0180001829.01	MsG0480023970.01	0.807091	5.985628e-50	3.303926e-47
MsG0180001829.01	MsG0480023996.01	0.849796	2.569216e-60	4.927480e-57
MsG0180001829.01	MsG0580024481.01	0.847958	8.315513e-60	1.502673e-56
MsG0180001829.01	MsG0580024540.01	0.851310	9.647410e-61	1.944803e-57
MsG0180001829.01	MsG0580024738.01	0.886008	4.968983e-72	3.486985e-68
MsG0180001829.01	MsG0580024894.01	0.810197	1.299045e-50	7.780718e-48
MsG0180001829.01	MsG0580025750.01	0.813338	2.692369e-51	1.753459e-48
MsG0180001829.01	MsG0580030073.01	0.809169	2.161120e-50	1.259812e-47
MsG0180001829.01	MsG0680031368.01	0.831056	2.071681e-55	2.222856e-52
MsG0180001829.01	MsG0680035611.01	0.879319	1.373295e-69	7.412849e-66
MsG0180001829.01	MsG0780036859.01	0.828486	8.753878e-55	8.713331e-52
MsG0180001829.01	MsG0780038383.01	0.834910	2.279936e-56	2.744220e-53
MsG0180001829.01	MsG0780039937.01	0.850159	2.033785e-60	3.947578e-57
MsG0180001829.01	MsG0780041076.01	0.828905	6.931043e-55	6.982866e-52
MsG0180001829.01	MsG0780041240.01	0.863547	2.303559e-64	7.009418e-61
MsG0180001829.01	MsG0780041311.01	0.866189	3.419826e-65	1.142498e-61
MsG0180001829.01	MsG0780041522.01	0.822708	2.050526e-53	1.729519e-50
MsG0180001829.01	MsG0780041790.01	0.830192	3.371772e-55	3.527517e-52
MsG0180001829.01	MsG0880041941.01	0.893756	4.672718e-75	4.514007e-71
MsG0180001829.01	MsG0880042517.01	0.866388	2.957350e-65	9.949365e-62
MsG0180001829.01	MsG0880043076.01	0.847851	8.900165e-60	1.602891e-56
MsG0180001829.01	MsG0880044204.01	0.841930	3.525133e-58	5.259827e-55
MsG0180001829.01	MsG0880045836.01	0.844223	8.635934e-59	1.384889e-55
MsG0180001829.01	MsG0880046220.01	0.845214	4.669445e-59	7.725823e-56
MsG0180001829.01	MsG0880046486.01	0.844643	6.656205e-59	1.081549e-55

PPI

Gene1	Gene2	Type
MsG0180001829.01	MsG0780037928.01	PPI
MsG0180000118.01	MsG0180001829.01	PPI
MsG0180001829.01	MsG0780037928.01	PPI
MsG0180001829.01	MsG0180001829.01	PPI
MsG0180000118.01	MsG0180001829.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001829.01.T01	MTR_1g044660	100.000	239	0	0	1	239	1	239	3.79e-177	486
MsG0180001829.01.T01	MTR_1g023000	99.163	239	2	0	1	239	1	239	2.47e-176	484
MsG0180001829.01.T01	MTR_6g052140	94.538	238	8	1	1	238	1	233	6.77e-166	457
MsG0180001829.01.T01	MTR_6g052220	94.538	238	8	1	1	238	1	233	6.77e-166	457
MsG0180001829.01.T01	MTR_1g111450	86.383	235	31	1	1	234	1	235	5.29e-150	417
MsG0180001829.01.T02	MTR_1g044660	100.000	239	0	0	1	239	1	239	3.79e-177	486
MsG0180001829.01.T02	MTR_1g023000	99.163	239	2	0	1	239	1	239	2.47e-176	484
MsG0180001829.01.T02	MTR_6g052140	94.538	238	8	1	1	238	1	233	6.77e-166	457
MsG0180001829.01.T02	MTR_6g052220	94.538	238	8	1	1	238	1	233	6.77e-166	457
MsG0180001829.01.T02	MTR_1g111450	86.383	235	31	1	1	234	1	235	5.29e-150	417

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001829.01.T01	AT5G35530	88.841	233	26	1	233	1	233	2.11e-153	426
MsG0180001829.01.T01	AT2G31610	88.987	227	25	1	227	1	227	4.58e-149	416
MsG0180001829.01.T01	AT3G53870	92.166	217	17	1	217	1	217	1.53e-148	414
MsG0180001829.01.T02	AT5G35530	88.841	233	26	1	233	1	233	2.11e-153	426
MsG0180001829.01.T02	AT2G31610	88.987	227	25	1	227	1	227	4.58e-149	416
MsG0180001829.01.T02	AT3G53870	92.166	217	17	1	217	1	217	1.53e-148	414

Find 43 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTAGGGCCCTGCTTTCCTTT+AGG	0.246468	1:-27839402	None:intergenic
TTCTTATGTGTGCGGAGAAA+TGG	0.294181	1:-27836948	None:intergenic
GTGTGAATGGTGACAATATC+AGG	0.336609	1:-27839435	None:intergenic
CAGACACATCGCTAATTAAA+AGG	0.350186	1:-27839570	None:intergenic
CTCTTCCTTTGGAGTGTGAA+TGG	0.357277	1:-27839448	None:intergenic
ATGTACTCCTCCTCTTCCTT+TGG	0.368386	1:-27839459	None:intergenic
TCAAAACATTCTCAAACAAC+AGG	0.380005	1:-27839531	None:intergenic
TTTGTGTTGTAGGGTGTTCT+CGG	0.388366	1:+27839348	MsG0180001829.01.T01:intron
CCATGTTTGCAGATTTAGCT+AGG	0.422376	1:-27837018	None:intergenic
CTCCGCACACATAAGAAACT+AGG	0.431348	1:+27836954	MsG0180001829.01.T01:five_prime_UTR
AGGTTAAGATCATGCTTGAC+TGG	0.451430	1:+27839376	MsG0180001829.01.T01:CDS
TCTTATGTGTGCGGAGAAAT+GGG	0.456666	1:-27836947	None:intergenic
AATGAACATAAATATGTTAG+TGG	0.458859	1:-27839799	None:intergenic
CATCAGGCCTGCTGCTGTTG+TGG	0.461102	1:+27839479	MsG0180001829.01.T01:CDS
AGGAAGAGGAGGAGTACATC+AGG	0.468833	1:+27839463	MsG0180001829.01.T01:CDS
CATTCTCAAACAACAGGGAC+TGG	0.486079	1:-27839525	None:intergenic
CATGTTTGCAGATTTAGCTA+GGG	0.497744	1:-27837017	None:intergenic
GACAGGAACCTCAATATCAT+TGG	0.498151	1:-27839502	None:intergenic
CTGGGATCCTAAAGGAAAGC+AGG	0.500050	1:+27839395	MsG0180001829.01.T01:CDS
CAAACAACAGGGACTGGGAC+AGG	0.510606	1:-27839519	None:intergenic
GTAGGGTGTTCTCGGTATCA+AGG	0.512546	1:+27839356	MsG0180001829.01.T01:intron
TCATTGGCCACAACAGCAGC+AGG	0.512718	1:-27839486	None:intergenic
ATGAACATAAATATGTTAGT+GGG	0.544012	1:-27839798	None:intergenic
CCTAGCTAAATCTGCAAACA+TGG	0.546408	1:+27837018	MsG0180001829.01.T01:exon
TGCGGAGAAATGGGTATGGA+TGG	0.547051	1:-27836938	None:intergenic
ATGCTTGACTGGGATCCTAA+AGG	0.556783	1:+27839387	MsG0180001829.01.T01:CDS
TGTTGTGGCCAATGATATTG+AGG	0.558726	1:+27839494	MsG0180001829.01.T01:CDS
TCCGCACACATAAGAAACTA+GGG	0.569089	1:+27836955	MsG0180001829.01.T01:five_prime_UTR
CATTCACACTCCAAAGGAAG+AGG	0.584530	1:+27839449	MsG0180001829.01.T01:CDS
ATTCTCAAACAACAGGGACT+GGG	0.596133	1:-27839524	None:intergenic
ATGTTTGCAGATTTAGCTAG+GGG	0.598120	1:-27837016	None:intergenic
GGTTAAGATCATGCTTGACT+GGG	0.599204	1:+27839377	MsG0180001829.01.T01:CDS
AATGGTGACAATATCAGGGA+GGG	0.600476	1:-27839430	None:intergenic
ACCCTAGTTTCTTATGTGTG+CGG	0.602423	1:-27836956	None:intergenic
TGGGATCCTAAAGGAAAGCA+GGG	0.609284	1:+27839396	MsG0180001829.01.T01:CDS
TCACACTCCAAAGGAAGAGG+AGG	0.628998	1:+27839452	MsG0180001829.01.T01:CDS
TGTGTGCGGAGAAATGGGTA+TGG	0.631955	1:-27836942	None:intergenic
TTTGCAGATTTAGCTAGGGG+CGG	0.644446	1:-27837013	None:intergenic
TGTGAATGGTGACAATATCA+GGG	0.645355	1:-27839434	None:intergenic
ATGGTGACAATATCAGGGAG+GGG	0.658335	1:-27839429	None:intergenic
TGTCACCATTCACACTCCAA+AGG	0.659904	1:+27839443	MsG0180001829.01.T01:CDS
CAAAACATTCTCAAACAACA+GGG	0.680476	1:-27839530	None:intergenic
GAATGGTGACAATATCAGGG+AGG	0.719800	1:-27839431	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATATTTGCATATTAAAAAAA+TGG	-	Chr1:27840648-27840667	None:intergenic	10.0%
!!!	ATATTTATTATTTTTCTGAA+AGG	+	Chr1:27840257-27840276	MsG0180001829.01.T01:intron	10.0%
!!!	ATTTATTTTTGTTTCATTTT+GGG	+	Chr1:27837333-27837352	MsG0180001829.01.T01:intron	10.0%
!!	AAAGGAAAATTGAAATATAT+CGG	-	Chr1:27838835-27838854	None:intergenic	15.0%
!!	ATATATGAAATTGTTATGTA+TGG	+	Chr1:27837496-27837515	MsG0180001829.01.T01:intron	15.0%
!!	TTTCAAAGTTAAATGTTATT+AGG	+	Chr1:27838044-27838063	MsG0180001829.01.T01:intron	15.0%
!!!	ATATGATTTGTGTTTTATTT+TGG	+	Chr1:27837755-27837774	MsG0180001829.01.T01:intron	15.0%
!!!	ATGATAATGATTTTTTACTT+GGG	+	Chr1:27837575-27837594	MsG0180001829.01.T01:intron	15.0%
!!!	GATTTATTTTTGTTTCATTT+TGG	+	Chr1:27837332-27837351	MsG0180001829.01.T01:intron	15.0%
!!!	TATGATAATGATTTTTTACT+TGG	+	Chr1:27837574-27837593	MsG0180001829.01.T01:intron	15.0%
!!!	TATGATTTGTGTTTTATTTT+GGG	+	Chr1:27837756-27837775	MsG0180001829.01.T01:intron	15.0%
!!!	TATTATGTTTGTTTTGATTT+TGG	+	Chr1:27837710-27837729	MsG0180001829.01.T01:intron	15.0%
!!	AACAAACATAATATATCACT+AGG	-	Chr1:27837703-27837722	None:intergenic	20.0%
!!	AAGGAAAATTGAAATATATC+GGG	-	Chr1:27838834-27838853	None:intergenic	20.0%
!!	AATAACATTGGAATAAAAAG+AGG	-	Chr1:27838661-27838680	None:intergenic	20.0%
!!	AATGAACATAAATATGTTAG+TGG	-	Chr1:27839802-27839821	None:intergenic	20.0%
!!	ATGAACATAAATATGTTAGT+GGG	-	Chr1:27839801-27839820	None:intergenic	20.0%
!!	ATGTTATTAGGAGAAATAAT+TGG	+	Chr1:27838056-27838075	MsG0180001829.01.T01:intron	20.0%
!!	GATCAAAATTTAGAAGATTA+GGG	+	Chr1:27840456-27840475	MsG0180001829.01.T01:intron	20.0%
!!	TAGCTAAACATAAACAAATA+TGG	-	Chr1:27838114-27838133	None:intergenic	20.0%
!!	TATTCGAGAGAATAATAAAT+GGG	-	Chr1:27838897-27838916	None:intergenic	20.0%
!!	TATTTGTTTATGTTTAGCTA+TGG	+	Chr1:27838114-27838133	MsG0180001829.01.T01:intron	20.0%
!!	TCATTATCATACAAAATTAG+AGG	-	Chr1:27837565-27837584	None:intergenic	20.0%
!!	TCATTATCATACATATTGAA+AGG	-	Chr1:27837660-27837679	None:intergenic	20.0%
!!	TGATCAAAATTTAGAAGATT+AGG	+	Chr1:27840455-27840474	MsG0180001829.01.T01:intron	20.0%
!!	TTACAACTAAAAATCATTAC+AGG	-	Chr1:27839067-27839086	None:intergenic	20.0%
!!	TTATGAATTATGATGTCTTT+AGG	+	Chr1:27840228-27840247	MsG0180001829.01.T01:intron	20.0%
!!!	AACATTTTAAGAAGCTAAAA+TGG	-	Chr1:27838154-27838173	None:intergenic	20.0%
!!!	ACATTTTAAGAAGCTAAAAT+GGG	-	Chr1:27838153-27838172	None:intergenic	20.0%
!!!	AGAAAATTAGTCTAAAGAAA+TGG	-	Chr1:27838505-27838524	None:intergenic	20.0%
!!!	GGAAATTTTCTTTAATAAAG+AGG	-	Chr1:27839780-27839799	None:intergenic	20.0%
!!!	TATTTCAATTTTCCTTTTAC+TGG	+	Chr1:27838838-27838857	MsG0180001829.01.T01:intron	20.0%
!!!	TTTTAAAATCTGTCCATTTT+TGG	+	Chr1:27840135-27840154	MsG0180001829.01.T01:intron	20.0%
!!!	TTTTGGAGATTATATGTTTT+GGG	+	Chr1:27838781-27838800	MsG0180001829.01.T01:intron	20.0%
!!!	TTTTGTTCTTGTTTTGTTTT+GGG	+	Chr1:27837462-27837481	MsG0180001829.01.T01:intron	20.0%
!!!	TTTTTGAAATTTTTCCGTAT+CGG	-	Chr1:27840555-27840574	None:intergenic	20.0%
!!!	TTTTTGGAGATTATATGTTT+TGG	+	Chr1:27838780-27838799	MsG0180001829.01.T01:intron	20.0%
!!!	TTTTTGTTCTTGTTTTGTTT+TGG	+	Chr1:27837461-27837480	MsG0180001829.01.T01:intron	20.0%
!	AAAATTTAGAAGATTAGGGT+TGG	+	Chr1:27840460-27840479	MsG0180001829.01.T01:intron	25.0%
!	AAACCCTAATTTCTTAGAAA+GGG	+	Chr1:27840854-27840873	MsG0180001829.01.T01:intron	25.0%
!	AATAATCTCAATGTACGTTA+AGG	+	Chr1:27839981-27840000	MsG0180001829.01.T01:intron	25.0%
!	ACATTTCCTTTATCTTTCTT+TGG	-	Chr1:27840924-27840943	None:intergenic	25.0%
!	ATAATCTCAATGTACGTTAA+GGG	+	Chr1:27839982-27840001	MsG0180001829.01.T01:intron	25.0%
!	ATTAACAAACACAAGAAATC+AGG	+	Chr1:27840668-27840687	MsG0180001829.01.T01:intron	25.0%
!	GAAAATTACAAAAATTGCAG+AGG	-	Chr1:27839636-27839655	None:intergenic	25.0%
!	GTATTCGAGAGAATAATAAA+TGG	-	Chr1:27838898-27838917	None:intergenic	25.0%
!	TAGGAAAAAGAAAGCAAATA+AGG	-	Chr1:27839264-27839283	None:intergenic	25.0%
!	TCAAAAATCAAGATACGATA+CGG	+	Chr1:27840568-27840587	MsG0180001829.01.T01:intron	25.0%
!	TTATCATACCATACATCATA+AGG	-	Chr1:27837437-27837456	None:intergenic	25.0%
!!	GATTAGTCAACAAATAACAT+TGG	-	Chr1:27838673-27838692	None:intergenic	25.0%
!!	TTTCCCTTTCTAAGAAATTA+GGG	-	Chr1:27840860-27840879	None:intergenic	25.0%
!!!	GGGTATTATAGTATTTTGAA+CGG	+	Chr1:27840002-27840021	MsG0180001829.01.T01:intron	25.0%
!!!	GGTATTATAGTATTTTGAAC+GGG	+	Chr1:27840003-27840022	MsG0180001829.01.T01:intron	25.0%
!!!	TAACATGGTGATTTACTTTT+TGG	+	Chr1:27838764-27838783	MsG0180001829.01.T01:intron	25.0%
!!!	TGTTTTTCAGAATAAAGAGA+TGG	-	Chr1:27838546-27838565	None:intergenic	25.0%
!!!	TTGTAGACTCTTTTTTAAAG+AGG	+	Chr1:27838319-27838338	MsG0180001829.01.T01:intron	25.0%
!!!	TTGTTTTTCCTTATGATGTA+TGG	+	Chr1:27837426-27837445	MsG0180001829.01.T01:intron	25.0%
	AAAGAAATGGTAAAGTCACA+TGG	-	Chr1:27838492-27838511	None:intergenic	30.0%
	AAATCCATGAAGTTTAAGGA+CGG	+	Chr1:27839141-27839160	MsG0180001829.01.T01:CDS	30.0%
	AATATATCGGGTACAAAAAG+AGG	-	Chr1:27838822-27838841	None:intergenic	30.0%
	AATATTGACGATTAAGAGAG+TGG	+	Chr1:27840719-27840738	MsG0180001829.01.T01:intron	30.0%
	ACATAGCAAACATAAAACAC+AGG	-	Chr1:27838616-27838635	None:intergenic	30.0%
	ATATATCGGGTACAAAAAGA+GGG	-	Chr1:27838821-27838840	None:intergenic	30.0%
	CAAAACATTCTCAAACAACA+GGG	-	Chr1:27839533-27839552	None:intergenic	30.0%
	CAACACATACTCATGTTAAA+TGG	+	Chr1:27838719-27838738	MsG0180001829.01.T01:intron	30.0%
	CTGAAAGGAATATACAAACA+GGG	+	Chr1:27840272-27840291	MsG0180001829.01.T01:intron	30.0%
	GAAACCCTAATTTCTTAGAA+AGG	+	Chr1:27840853-27840872	MsG0180001829.01.T01:intron	30.0%
	TAAACTAACTAACCTGTCTA+AGG	-	Chr1:27839230-27839249	None:intergenic	30.0%
	TAATATGTCACGAAGACATA+TGG	-	Chr1:27840316-27840335	None:intergenic	30.0%
	TATTGTCAGTGGAAAATTGA+GGG	+	Chr1:27839107-27839126	MsG0180001829.01.T01:CDS	30.0%
	TCAAAACATTCTCAAACAAC+AGG	-	Chr1:27839534-27839553	None:intergenic	30.0%
	TCTGAAAGGAATATACAAAC+AGG	+	Chr1:27840271-27840290	MsG0180001829.01.T01:intron	30.0%
	TGAAACTACAAAAATTGCGA+AGG	-	Chr1:27839677-27839696	None:intergenic	30.0%
	TTATTGTCAGTGGAAAATTG+AGG	+	Chr1:27839106-27839125	MsG0180001829.01.T01:CDS	30.0%
	TTGTGATGTATAGGTGAAAA+GGG	+	Chr1:27837782-27837801	MsG0180001829.01.T01:intron	30.0%
	TTGTTTATGTTTAGCTATGG+TGG	+	Chr1:27838117-27838136	MsG0180001829.01.T01:intron	30.0%
	TTTCCTACAACATTTCATGT+TGG	+	Chr1:27839277-27839296	MsG0180001829.01.T01:intron	30.0%
	TTTGTGATGTATAGGTGAAA+AGG	+	Chr1:27837781-27837800	MsG0180001829.01.T01:intron	30.0%
!	AAAAAGAGGGATTTAAGATG+TGG	-	Chr1:27838808-27838827	None:intergenic	30.0%
!	CTTTCCCTTTCTAAGAAATT+AGG	-	Chr1:27840861-27840880	None:intergenic	30.0%
!	GTCTCTAACTATTTCTTTCA+GGG	+	Chr1:27838941-27838960	MsG0180001829.01.T01:intron	30.0%
!	TGTCTCTAACTATTTCTTTC+AGG	+	Chr1:27838940-27838959	MsG0180001829.01.T01:intron	30.0%
!	TTATTCTGGTGTTGAAGTTA+GGG	+	Chr1:27837221-27837240	MsG0180001829.01.T01:CDS	30.0%
!	TTGATGGTTAACTCCAAAAA+TGG	-	Chr1:27840151-27840170	None:intergenic	30.0%
!	TTTCATGTTGGTTGTTCATT+TGG	+	Chr1:27839289-27839308	MsG0180001829.01.T01:intron	30.0%
!!	AACTTTTAATTACCACCCAT+TGG	-	Chr1:27838873-27838892	None:intergenic	30.0%
!!	AGATTAGGGTTGGTTAAAAT+TGG	+	Chr1:27840470-27840489	MsG0180001829.01.T01:intron	30.0%
!!	ATTATAGTATTTTGAACGGG+TGG	+	Chr1:27840006-27840025	MsG0180001829.01.T01:intron	30.0%
!!	GTTGTTCATTTGGTTTGTTA+TGG	+	Chr1:27839299-27839318	MsG0180001829.01.T01:intron	30.0%
!!	TAGCATTTTCAAGGATTGTA+GGG	+	Chr1:27839898-27839917	MsG0180001829.01.T01:intron	30.0%
!!	TTATAGTATTTTGAACGGGT+GGG	+	Chr1:27840007-27840026	MsG0180001829.01.T01:intron	30.0%
!!	TTCAACTTTTTCTTCCAAAG+TGG	-	Chr1:27840836-27840855	None:intergenic	30.0%
!!	TTTGGGTTTTTGTGATGTAT+AGG	+	Chr1:27837773-27837792	MsG0180001829.01.T01:intron	30.0%
!!!	GAGAATGTTTTGATTTGCTT+TGG	+	Chr1:27839541-27839560	MsG0180001829.01.T01:exon	30.0%
	AATCCATGAAGTTTAAGGAC+GGG	+	Chr1:27839142-27839161	MsG0180001829.01.T01:CDS	35.0%
	ACTTCATGGATATAAGGATC+AGG	-	Chr1:27840060-27840079	None:intergenic	35.0%
	AGCCAAATCCATGAAGTTTA+AGG	+	Chr1:27839137-27839156	MsG0180001829.01.T01:CDS	35.0%
	AGGGACTCATAAAGCATATA+AGG	-	Chr1:27838414-27838433	None:intergenic	35.0%
	AGTTCTCTAACTAACACTCA+TGG	+	Chr1:27840178-27840197	MsG0180001829.01.T01:intron	35.0%
	ATGTTTGCAGATTTAGCTAG+GGG	-	Chr1:27837019-27837038	None:intergenic	35.0%
	CAACCAACATGAAATGTTGT+AGG	-	Chr1:27839283-27839302	None:intergenic	35.0%
	CACTACTAAGAGAGATGAAT+TGG	-	Chr1:27837101-27837120	None:intergenic	35.0%
	CAGACACATCGCTAATTAAA+AGG	-	Chr1:27839573-27839592	None:intergenic	35.0%
	CAGGAAACAGTATAACAAAC+AGG	-	Chr1:27839048-27839067	None:intergenic	35.0%
	CATGAGACTTCATGGATATA+AGG	-	Chr1:27840066-27840085	None:intergenic	35.0%
	CATGTTTGCAGATTTAGCTA+GGG	-	Chr1:27837020-27837039	None:intergenic	35.0%
	CTTCATGGATATAAGGATCA+GGG	-	Chr1:27840059-27840078	None:intergenic	35.0%
	GAAAGATGCAATTGTTTGTG+TGG	+	Chr1:27840876-27840895	MsG0180001829.01.T01:intron	35.0%
	GAGTCAATGTAATCCTTAAC+AGG	-	Chr1:27839189-27839208	None:intergenic	35.0%
	GTCCTTAAACTTCATGGATT+TGG	-	Chr1:27839142-27839161	None:intergenic	35.0%
	TACTGGTGTGTATTTCCAAT+GGG	+	Chr1:27838855-27838874	MsG0180001829.01.T01:intron	35.0%
	TGGAAATACACACCAGTAAA+AGG	-	Chr1:27838853-27838872	None:intergenic	35.0%
	TGTGAATGGTGACAATATCA+GGG	-	Chr1:27839437-27839456	None:intergenic	35.0%
	TTACTGGTGTGTATTTCCAA+TGG	+	Chr1:27838854-27838873	MsG0180001829.01.T01:intron	35.0%
	TTTCAATGTCACCCTAAGTA+GGG	-	Chr1:27838433-27838452	None:intergenic	35.0%
	TTTCTTCGCTGAATTGAATG+AGG	+	Chr1:27837170-27837189	MsG0180001829.01.T01:CDS	35.0%
	TTTGTGTCCTTTGTGTTGTA+GGG	+	Chr1:27839339-27839358	MsG0180001829.01.T01:intron	35.0%
!	ACTATGTTGCGCATTTTTCT+TGG	+	Chr1:27838347-27838366	MsG0180001829.01.T01:intron	35.0%
!	AGTCTGCAACTTTTGTAACA+TGG	+	Chr1:27838749-27838768	MsG0180001829.01.T01:intron	35.0%
!	CATGCATTGTAGCATTTTCA+AGG	+	Chr1:27839889-27839908	MsG0180001829.01.T01:intron	35.0%
!	CTATGTTGCGCATTTTTCTT+GGG	+	Chr1:27838348-27838367	MsG0180001829.01.T01:intron	35.0%
!	GTTATTCTGGTGTTGAAGTT+AGG	+	Chr1:27837220-27837239	MsG0180001829.01.T01:CDS	35.0%
!	TATGTTGCGCATTTTTCTTG+GGG	+	Chr1:27838349-27838368	MsG0180001829.01.T01:intron	35.0%
!	TTTTCAATGTCACCCTAAGT+AGG	-	Chr1:27838434-27838453	None:intergenic	35.0%
!	TTTTGTGTCCTTTGTGTTGT+AGG	+	Chr1:27839338-27839357	MsG0180001829.01.T01:intron	35.0%
!!	AGCATTTTCAAGGATTGTAG+GGG	+	Chr1:27839899-27839918	MsG0180001829.01.T01:intron	35.0%
!!	CTTTTAATTAGCGATGTGTC+TGG	+	Chr1:27839571-27839590	MsG0180001829.01.T01:three_prime_UTR	35.0%
!!	GTAGCATTTTCAAGGATTGT+AGG	+	Chr1:27839897-27839916	MsG0180001829.01.T01:intron	35.0%
!!	TATAGTATTTTGAACGGGTG+GGG	+	Chr1:27840008-27840027	MsG0180001829.01.T01:intron	35.0%
!!!	CTTTCGCTTTTTGCTCATTT+GGG	-	Chr1:27837047-27837066	None:intergenic	35.0%
	AAATCAAGATACGATACGGC+TGG	+	Chr1:27840572-27840591	MsG0180001829.01.T01:intron	40.0%
	AAATGGTAAAGTCACATGGC+TGG	-	Chr1:27838488-27838507	None:intergenic	40.0%
	AATCAAGATACGATACGGCT+GGG	+	Chr1:27840573-27840592	MsG0180001829.01.T01:intron	40.0%
	AATGGTGACAATATCAGGGA+GGG	-	Chr1:27839433-27839452	None:intergenic	40.0%
	ACCCTAGTTTCTTATGTGTG+CGG	-	Chr1:27836959-27836978	None:intergenic	40.0%
	AGGTTAAGATCATGCTTGAC+TGG	+	Chr1:27839376-27839395	MsG0180001829.01.T01:CDS	40.0%
	ATACCCGTCCTTAAACTTCA+TGG	-	Chr1:27839148-27839167	None:intergenic	40.0%
	ATGCAATTGTTTGTGTGGTG+TGG	+	Chr1:27840881-27840900	MsG0180001829.01.T01:intron	40.0%
	ATTCTCAAACAACAGGGACT+GGG	-	Chr1:27839527-27839546	None:intergenic	40.0%
	CCAAATGAGCAAAAAGCGAA+AGG	+	Chr1:27837045-27837064	MsG0180001829.01.T01:CDS	40.0%
	CCATGTTTGCAGATTTAGCT+AGG	-	Chr1:27837021-27837040	None:intergenic	40.0%
	CCTAGCTAAATCTGCAAACA+TGG	+	Chr1:27837018-27837037	MsG0180001829.01.T01:exon	40.0%
	CTGGCACCAAAGAAAGATAA+AGG	+	Chr1:27840915-27840934	MsG0180001829.01.T01:intron	40.0%
	CTTGCTGAAGATGGTTATTC+TGG	+	Chr1:27837207-27837226	MsG0180001829.01.T01:CDS	40.0%
	GACAGGAACCTCAATATCAT+TGG	-	Chr1:27839505-27839524	None:intergenic	40.0%
	GAGTGTTAGTTAGAGAACTG+AGG	-	Chr1:27840177-27840196	None:intergenic	40.0%
	GATGTATAGGTGAAAAGGGA+AGG	+	Chr1:27837786-27837805	MsG0180001829.01.T01:intron	40.0%
	GCTTTATGAGTCCCTACTTA+GGG	+	Chr1:27838419-27838438	MsG0180001829.01.T01:intron	40.0%
	GGTTAAGATCATGCTTGACT+GGG	+	Chr1:27839377-27839396	MsG0180001829.01.T01:CDS	40.0%
	GTAATCCTTAACAGGTTGTC+CGG	-	Chr1:27839181-27839200	None:intergenic	40.0%
	GTGTGAATGGTGACAATATC+AGG	-	Chr1:27839438-27839457	None:intergenic	40.0%
	TAAAGCTCAACACTGTTCTC+AGG	-	Chr1:27837857-27837876	None:intergenic	40.0%
	TCAAAGCTGTCTACGATGAT+TGG	+	Chr1:27838251-27838270	MsG0180001829.01.T01:intron	40.0%
	TCCGCACACATAAGAAACTA+GGG	+	Chr1:27836955-27836974	MsG0180001829.01.T01:five_prime_UTR	40.0%
	TCTTATGTGTGCGGAGAAAT+GGG	-	Chr1:27836950-27836969	None:intergenic	40.0%
	TGCTTTATGAGTCCCTACTT+AGG	+	Chr1:27838418-27838437	MsG0180001829.01.T01:intron	40.0%
	TGTTCACTCATGAGACTTCA+TGG	-	Chr1:27840074-27840093	None:intergenic	40.0%
	TGTTGTGGCCAATGATATTG+AGG	+	Chr1:27839494-27839513	MsG0180001829.01.T01:CDS	40.0%
	TTCTTATGTGTGCGGAGAAA+TGG	-	Chr1:27836951-27836970	None:intergenic	40.0%
	TTGAGGTTTGTCATGGAAAG+TGG	+	Chr1:27838978-27838997	MsG0180001829.01.T01:CDS	40.0%
!	TTTGTGTTGTAGGGTGTTCT+CGG	+	Chr1:27839348-27839367	MsG0180001829.01.T01:intron	40.0%
!!	ATAGTATTTTGAACGGGTGG+GGG	+	Chr1:27840009-27840028	MsG0180001829.01.T01:intron	40.0%
!!	ATTTTTCCGTATCGGCGTAT+CGG	-	Chr1:27840547-27840566	None:intergenic	40.0%
!!	GTAATTGCTGTTTCATGTGC+AGG	+	Chr1:27839083-27839102	MsG0180001829.01.T01:intron	40.0%
!!!	CCTTTCGCTTTTTGCTCATT+TGG	-	Chr1:27837048-27837067	None:intergenic	40.0%
	AAAACAAACCTCGCATCCCT+TGG	-	Chr1:27839006-27839025	None:intergenic	45.0%
	AAACCTCAACACACCATAGC+AGG	-	Chr1:27838967-27838986	None:intergenic	45.0%
	AAGTTGAATAATCCCCCGAC+AGG	-	Chr1:27840109-27840128	None:intergenic	45.0%
	AGTTGAATAATCCCCCGACA+GGG	-	Chr1:27840108-27840127	None:intergenic	45.0%
	ATGAGTTACCGAGAACAGCT+TGG	-	Chr1:27837290-27837309	None:intergenic	45.0%
	ATGATGATCTCAGTGCGCAT+AGG	-	Chr1:27837252-27837271	None:intergenic	45.0%
	ATGCTTGACTGGGATCCTAA+AGG	+	Chr1:27839387-27839406	MsG0180001829.01.T01:CDS	45.0%
	ATGGTGACAATATCAGGGAG+GGG	-	Chr1:27839432-27839451	None:intergenic	45.0%
	ATGTACTCCTCCTCTTCCTT+TGG	-	Chr1:27839462-27839481	None:intergenic	45.0%
	ATTGTTTGTGTGGTGTGGTG+TGG	+	Chr1:27840886-27840905	MsG0180001829.01.T01:intron	45.0%
	ATTTCTTTCAGGGCCTGCTA+TGG	+	Chr1:27838951-27838970	MsG0180001829.01.T01:intron	45.0%
	CAGACATGTTCTCCTTAGAC+AGG	+	Chr1:27839215-27839234	MsG0180001829.01.T01:CDS	45.0%
	CAGGAAACTTGAACCTCTTC+TGG	-	Chr1:27837838-27837857	None:intergenic	45.0%
	CATGTGCAGGTTATTGTCAG+TGG	+	Chr1:27839096-27839115	MsG0180001829.01.T01:intron	45.0%
	CATTCACACTCCAAAGGAAG+AGG	+	Chr1:27839449-27839468	MsG0180001829.01.T01:CDS	45.0%
	CATTCTCAAACAACAGGGAC+TGG	-	Chr1:27839528-27839547	None:intergenic	45.0%
	CTCCGCACACATAAGAAACT+AGG	+	Chr1:27836954-27836973	MsG0180001829.01.T01:five_prime_UTR	45.0%
	GAATGGTGACAATATCAGGG+AGG	-	Chr1:27839434-27839453	None:intergenic	45.0%
	GAGAACACCCTACAACACAA+AGG	-	Chr1:27839349-27839368	None:intergenic	45.0%
	GGAGTTGTGACATTAGTGAG+CGG	+	Chr1:27840199-27840218	MsG0180001829.01.T01:intron	45.0%
	TCCGTATCGTATCTCGTATC+CGG	-	Chr1:27840512-27840531	None:intergenic	45.0%
	TGAGTTACCGAGAACAGCTT+GGG	-	Chr1:27837289-27837308	None:intergenic	45.0%
	TGATGATCTCAGTGCGCATA+GGG	-	Chr1:27837251-27837270	None:intergenic	45.0%
	TGGGATCCTAAAGGAAAGCA+GGG	+	Chr1:27839396-27839415	MsG0180001829.01.T01:CDS	45.0%
	TGGTGTGTATTTCCAATGGG+TGG	+	Chr1:27838858-27838877	MsG0180001829.01.T01:intron	45.0%
	TGGTGTGTTGAGGTTTGTCA+TGG	+	Chr1:27838971-27838990	MsG0180001829.01.T01:CDS	45.0%
	TGTCACCATTCACACTCCAA+AGG	+	Chr1:27839443-27839462	MsG0180001829.01.T01:CDS	45.0%
	TGTTGAGCTTTACGCTGAGA+AGG	+	Chr1:27837865-27837884	MsG0180001829.01.T01:CDS	45.0%
	TTGTTTGTGTGGTGTGGTGT+GGG	+	Chr1:27840887-27840906	MsG0180001829.01.T01:intron	45.0%
	TTTGCAGATTTAGCTAGGGG+CGG	-	Chr1:27837016-27837035	None:intergenic	45.0%
!	ATATCAGGGAGGGGAGTTTT+AGG	-	Chr1:27839423-27839442	None:intergenic	45.0%
!	TAGAGAACTGAGGCACTTGA+TGG	-	Chr1:27840167-27840186	None:intergenic	45.0%
!	TATCAGGGAGGGGAGTTTTA+GGG	-	Chr1:27839422-27839441	None:intergenic	45.0%
!!	ACTTCATGGATTTGGCTCTC+TGG	-	Chr1:27839134-27839153	None:intergenic	45.0%
!!	CTCTTCCTTTGGAGTGTGAA+TGG	-	Chr1:27839451-27839470	None:intergenic	45.0%
!!	CTTCATGGATTTGGCTCTCT+GGG	-	Chr1:27839133-27839152	None:intergenic	45.0%
	ACCATCTTCAGCAAGCTCTC+TGG	-	Chr1:27837202-27837221	None:intergenic	50.0%
	ACGCTGAGAAGGTCAACAAC+AGG	+	Chr1:27837876-27837895	MsG0180001829.01.T01:CDS	50.0%
	ACTCGTACCCAAGCTGTTCT+CGG	+	Chr1:27837279-27837298	MsG0180001829.01.T01:CDS	50.0%
	CAATTCGACAGTGGCCAAAG+TGG	+	Chr1:27840803-27840822	MsG0180001829.01.T01:intron	50.0%
	CAGCTTGTAGCGAAGAGACT+CGG	-	Chr1:27837924-27837943	None:intergenic	50.0%
	CCCGGATACGAGATACGATA+CGG	+	Chr1:27840508-27840527	MsG0180001829.01.T01:intron	50.0%
	CCGTATCGTATCTCGTATCC+GGG	-	Chr1:27840511-27840530	None:intergenic	50.0%
	CGCTGAGAAGGTCAACAACA+GGG	+	Chr1:27837877-27837896	MsG0180001829.01.T01:CDS	50.0%
	CTGGGATCCTAAAGGAAAGC+AGG	+	Chr1:27839395-27839414	MsG0180001829.01.T01:CDS	50.0%
	GAACCTCTTCTGGACAACTG+AGG	-	Chr1:27837828-27837847	None:intergenic	50.0%
	GACGGGTATATGATCTCGTC+CGG	+	Chr1:27839159-27839178	MsG0180001829.01.T01:CDS	50.0%
	GATGATCTCAGTGCGCATAG+GGG	-	Chr1:27837250-27837269	None:intergenic	50.0%
	GCGCACTGAGATCATCATCA+GGG	+	Chr1:27837254-27837273	MsG0180001829.01.T01:CDS	50.0%
	GCTGAGAAGGTCAACAACAG+GGG	+	Chr1:27837878-27837897	MsG0180001829.01.T01:CDS	50.0%
	GGTAGTACCTACCGAATCCA+TGG	-	Chr1:27840038-27840057	None:intergenic	50.0%
	GTTGTGACATTAGTGAGCGG+TGG	+	Chr1:27840202-27840221	MsG0180001829.01.T01:intron	50.0%
	TCACACTCCAAAGGAAGAGG+AGG	+	Chr1:27839452-27839471	MsG0180001829.01.T01:CDS	50.0%
	TCTCTTCGCTACAAGCTGCT+CGG	+	Chr1:27837926-27837945	MsG0180001829.01.T01:CDS	50.0%
	TGACCTCAGTTGTCCAGAAG+AGG	+	Chr1:27837822-27837841	MsG0180001829.01.T01:CDS	50.0%
	TGCGCACTGAGATCATCATC+AGG	+	Chr1:27837253-27837272	MsG0180001829.01.T01:CDS	50.0%
	TGTGTGCGGAGAAATGGGTA+TGG	-	Chr1:27836945-27836964	None:intergenic	50.0%
	TTAGGGCCCTGCTTTCCTTT+AGG	-	Chr1:27839405-27839424	None:intergenic	50.0%
	TTGTTGCAGTTCGTCGCTGA+CGG	+	Chr1:27837144-27837163	MsG0180001829.01.T01:intron	50.0%
!	AGGAAGAGGAGGAGTACATC+AGG	+	Chr1:27839463-27839482	MsG0180001829.01.T01:CDS	50.0%
!	GTAGGGTGTTCTCGGTATCA+AGG	+	Chr1:27839356-27839375	MsG0180001829.01.T01:intron	50.0%
!	GTCATGGAAAGTGGTGCCAA+GGG	+	Chr1:27838987-27839006	MsG0180001829.01.T01:CDS	50.0%
!	TGTCATGGAAAGTGGTGCCA+AGG	+	Chr1:27838986-27839005	MsG0180001829.01.T01:CDS	50.0%
!!	AAAGAGCACCATCAGCTCGA+CGG	+	Chr1:27840775-27840794	MsG0180001829.01.T01:intron	50.0%
!!	ACCAGAGAGCTTGCTGAAGA+TGG	+	Chr1:27837198-27837217	MsG0180001829.01.T01:CDS	50.0%
!!	CGAGCTGATGGTGCTCTTTT+TGG	-	Chr1:27840774-27840793	None:intergenic	50.0%
	AAAGTGGACGGCGACCACTT+TGG	+	Chr1:27840819-27840838	MsG0180001829.01.T01:intron	55.0%
	AAAGTGGTCGCCGTCCACTT+TGG	-	Chr1:27840820-27840839	None:intergenic	55.0%
	AAGAGACTCGGCCTGAGCAA+TGG	-	Chr1:27837912-27837931	None:intergenic	55.0%
	AATAATCCCCCGACAGGGAC+GGG	-	Chr1:27840103-27840122	None:intergenic	55.0%
	ACATTTCTCCCCGTCCCTGT+CGG	+	Chr1:27840091-27840110	MsG0180001829.01.T01:intron	55.0%
	ACGGTCGAGCAATTCGACAG+TGG	+	Chr1:27840794-27840813	MsG0180001829.01.T01:intron	55.0%
	CAAACAACAGGGACTGGGAC+AGG	-	Chr1:27839522-27839541	None:intergenic	55.0%
	CTCGTCCGGACAACCTGTTA+AGG	+	Chr1:27839173-27839192	MsG0180001829.01.T01:CDS	55.0%
	GAATAATCCCCCGACAGGGA+CGG	-	Chr1:27840104-27840123	None:intergenic	55.0%
	GGTGGGGGAATCCATGGATT+CGG	+	Chr1:27840024-27840043	MsG0180001829.01.T01:intron	55.0%
	GTGACATTAGTGAGCGGTGG+TGG	+	Chr1:27840205-27840224	MsG0180001829.01.T01:intron	55.0%
	TCATTGGCCACAACAGCAGC+AGG	-	Chr1:27839489-27839508	None:intergenic	55.0%
	TCGACAGTGGCCAAAGTGGA+CGG	+	Chr1:27840807-27840826	MsG0180001829.01.T01:intron	55.0%
	TGGACGCAATCTGTGAAGCC+CGG	+	Chr1:27840490-27840509	MsG0180001829.01.T01:intron	55.0%
!	ACTGCACCGATACGCCGATA+CGG	+	Chr1:27840538-27840557	MsG0180001829.01.T01:intron	55.0%
!	GGGGAATCCATGGATTCGGT+AGG	+	Chr1:27840028-27840047	MsG0180001829.01.T01:intron	55.0%
	ATAATCCCCCGACAGGGACG+GGG	-	Chr1:27840102-27840121	None:intergenic	60.0%
	ATTTCTCCCCGTCCCTGTCG+GGG	+	Chr1:27840093-27840112	MsG0180001829.01.T01:intron	60.0%
	CATCAGGCCTGCTGCTGTTG+TGG	+	Chr1:27839479-27839498	MsG0180001829.01.T01:CDS	60.0%
	CATTTCTCCCCGTCCCTGTC+GGG	+	Chr1:27840092-27840111	MsG0180001829.01.T01:intron	60.0%
	CTTCGCTACAAGCTGCTCGG+AGG	+	Chr1:27837929-27837948	MsG0180001829.01.T01:CDS	60.0%
	GGGACTTTGCGCCATTGCTC+AGG	+	Chr1:27837898-27837917	MsG0180001829.01.T01:CDS	60.0%
	GGGCCTGCTATGGTGTGTTG+AGG	+	Chr1:27838961-27838980	MsG0180001829.01.T01:intron	60.0%
	TGAACGGGTGGGGGAATCCA+TGG	+	Chr1:27840018-27840037	MsG0180001829.01.T01:intron	60.0%
	TGGTGTGGTGTGGGTCGTAC+TGG	+	Chr1:27840896-27840915	MsG0180001829.01.T01:intron	60.0%
	TTGCTCGACCGTCGAGCTGA+TGG	-	Chr1:27840786-27840805	None:intergenic	60.0%
!	AAGTGGTGCCAAGGGATGCG+AGG	+	Chr1:27838995-27839014	MsG0180001829.01.T01:CDS	60.0%
!!	TCGGAGGTCTTGCTGTTCGC+AGG	+	Chr1:27837945-27837964	MsG0180001829.01.T01:CDS	60.0%
	TTTCTCCCCGTCCCTGTCGG+GGG	+	Chr1:27840094-27840113	MsG0180001829.01.T01:intron	65.0%

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	27836941	27841025	27836941	ID=MsG0180001829.01;Name=MsG0180001829.01
Chr1	mRNA	27836941	27841025	27836941	ID=MsG0180001829.01.T01;Parent=MsG0180001829.01;Name=MsG0180001829.01.T01;_AED=0.50;_eAED=0.50;_QI=96\|1\|1\|1\|0.83\|0.71\|7\|219\|239
Chr1	exon	27836941	27837066	27836941	ID=MsG0180001829.01.T01:exon:1102;Parent=MsG0180001829.01.T01
Chr1	exon	27839360	27839722	27839360	ID=MsG0180001829.01.T01:exon:1107;Parent=MsG0180001829.01.T01
Chr1	exon	27840987	27841025	27840987	ID=MsG0180001829.01.T01:exon:1108;Parent=MsG0180001829.01.T01
Chr1	five_prime_UTR	27836941	27837036	27836941	ID=MsG0180001829.01.T01:five_prime_utr;Parent=MsG0180001829.01.T01
Chr1	CDS	27837037	27837066	27837037	ID=MsG0180001829.01.T01:cds;Parent=MsG0180001829.01.T01
Chr1	CDS	27837153	27837300	27837153	ID=MsG0180001829.01.T01:cds;Parent=MsG0180001829.01.T01
Chr1	CDS	27837795	27837966	27837795	ID=MsG0180001829.01.T01:cds;Parent=MsG0180001829.01.T01
Chr1	CDS	27838962	27839016	27838962	ID=MsG0180001829.01.T01:cds;Parent=MsG0180001829.01.T01
Chr1	CDS	27839105	27839236	27839105	ID=MsG0180001829.01.T01:cds;Parent=MsG0180001829.01.T01
Chr1	CDS	27839360	27839542	27839360	ID=MsG0180001829.01.T01:cds;Parent=MsG0180001829.01.T01
Chr1	three_prime_UTR	27839543	27839722	27839543	ID=MsG0180001829.01.T01:three_prime_utr;Parent=MsG0180001829.01.T01
Chr1	three_prime_UTR	27840987	27841025	27840987	ID=MsG0180001829.01.T01:three_prime_utr;Parent=MsG0180001829.01.T01
Chr1	mRNA	27836942	27839809	27836942	ID=MsG0180001829.01.T02;Parent=MsG0180001829.01;Name=MsG0180001829.01.T02;_AED=0.50;_eAED=0.50;_QI=95\|1\|1\|1\|1\|1\|6\|267\|239
Chr1	exon	27836942	27837066	27836942	ID=MsG0180001829.01.T02:exon:1109;Parent=MsG0180001829.01.T02
Chr1	exon	27839360	27839809	27839360	ID=MsG0180001829.01.T02:exon:1110;Parent=MsG0180001829.01.T02
Chr1	five_prime_UTR	27836942	27837036	27836942	ID=MsG0180001829.01.T02:five_prime_utr;Parent=MsG0180001829.01.T02
Chr1	CDS	27837037	27837066	27837037	ID=MsG0180001829.01.T02:cds;Parent=MsG0180001829.01.T02
Chr1	CDS	27837153	27837300	27837153	ID=MsG0180001829.01.T02:cds;Parent=MsG0180001829.01.T02
Chr1	CDS	27837795	27837966	27837795	ID=MsG0180001829.01.T02:cds;Parent=MsG0180001829.01.T02
Chr1	CDS	27838962	27839016	27838962	ID=MsG0180001829.01.T02:cds;Parent=MsG0180001829.01.T02
Chr1	CDS	27839105	27839236	27839105	ID=MsG0180001829.01.T02:cds;Parent=MsG0180001829.01.T02
Chr1	CDS	27839360	27839542	27839360	ID=MsG0180001829.01.T02:cds;Parent=MsG0180001829.01.T02
Chr1	three_prime_UTR	27839543	27839809	27839543	ID=MsG0180001829.01.T02:three_prime_utr;Parent=MsG0180001829.01.T02

Gene Sequence

>MsG0180001829.01.T01

ATGGCTACCCAAATGAGCAAAAAGCGAAAGTTCGTCGCTGACGGAGTTTTCTTCGCTGAATTGAATGAGGTTTTAACCAGAGAGCTTGCTGAAGATGGTTATTCTGGTGTTGAAGTTAGGGTTACCCCTATGCGCACTGAGATCATCATCAGGGCTACTCGTACCCAAGCTGTTCTCGGTGAAAAGGGAAGGAGAATAAGAGAGCTGACCTCAGTTGTCCAGAAGAGGTTCAAGTTTCCTGAGAACAGTGTTGAGCTTTACGCTGAGAAGGTCAACAACAGGGGACTTTGCGCCATTGCTCAGGCCGAGTCTCTTCGCTACAAGCTGCTCGGAGGTCTTGCTGTTCGCAGGGCCTGCTATGGTGTGTTGAGGTTTGTCATGGAAAGTGGTGCCAAGGGATGCGAGGTTATTGTCAGTGGAAAATTGAGGGCCCAGAGAGCCAAATCCATGAAGTTTAAGGACGGGTATATGATCTCGTCCGGACAACCTGTTAAGGATTACATTGACTCTGCTGTCAGACATGTTCTCCTTAGACAGGGTGTTCTCGGTATCAAGGTTAAGATCATGCTTGACTGGGATCCTAAAGGAAAGCAGGGCCCTAAAACTCCCCTCCCTGATATTGTCACCATTCACACTCCAAAGGAAGAGGAGGAGTACATCAGGCCTGCTGCTGTTGTGGCCAATGATATTGAGGTTCCTGTCCCAGTCCCTGTTGTTTGA

>MsG0180001829.01.T02

Protein sequence

>MsG0180001829.01.T01

MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEVPVPVPVV*

>MsG0180001829.01.T02