AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002738.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002738.01.T01 MTR_1g051820 95.884 413 9 1 1 405 1 413 0.0 813
MsG0180002738.01.T01 MTR_2g079780 87.982 441 38 4 1 432 1 435 0.0 788
MsG0180002738.01.T01 MTR_1g060440 67.568 74 14 2 398 463 375 446 5.38e-21 96.7
MsG0180002738.01.T01 MTR_1g081970 59.016 61 21 1 403 463 393 449 3.87e-12 68.9
MsG0180002738.01.T01 MTR_1g051765 50.000 66 12 1 398 463 126 170 9.62e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002738.01.T01 AT3G57290 84.146 410 57 1 4 405 8 417 0.0 724

Find 103 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACCCCATTACTGAGTTTC+TGG 0.147601 1:-44195312 MsG0180002738.01.T01:CDS
TCCACATTCAAACTGAAATT+TGG 0.164521 1:+44196084 None:intergenic
CAAACTGAAATTTGGCATAT+TGG 0.230513 1:+44196092 None:intergenic
TCCAGTTTCAGAGTCAATTT+TGG 0.235308 1:+44194564 None:intergenic
AAAGGAGTTTGAATGCATTA+TGG 0.240593 1:-44196003 MsG0180002738.01.T01:CDS
TCAAGGAACTCGTCCCTTAA+TGG 0.241702 1:+44195011 None:intergenic
TCAGAATCCTGCTGCTGTTC+AGG 0.255503 1:-44197527 MsG0180002738.01.T01:CDS
GCCAAAATTGACTCTGAAAC+TGG 0.280218 1:-44194565 MsG0180002738.01.T01:CDS
CTGAAGTATTGATGCAAAAC+TGG 0.284674 1:-44195967 MsG0180002738.01.T01:CDS
ACTTCTCAACTGTACCATTA+AGG 0.289978 1:-44195025 MsG0180002738.01.T01:CDS
TTCTCAAAGTTATTGAAATC+TGG 0.292195 1:+44192484 None:intergenic
GATGCTTAATGACAAATATC+AGG 0.323462 1:-44197473 MsG0180002738.01.T01:intron
CAAGCCAGAAACTCAGTAAT+GGG 0.350399 1:+44195308 None:intergenic
ATAGATCGATCTTAGCCTTA+AGG 0.355326 1:+44197704 None:intergenic
ATCAGGTGCAAAGCAGAATA+TGG 0.356738 1:-44195775 MsG0180002738.01.T01:intron
ACAAAGTCAACTTACACATT+TGG 0.360127 1:+44194517 None:intergenic
TATGTCAACTATGACTTTGA+TGG 0.363610 1:-44195281 MsG0180002738.01.T01:CDS
ACAAGAGCAGAATTCATATA+AGG 0.370491 1:-44195333 MsG0180002738.01.T01:CDS
AAGGAGTTTGAATGCATTAT+GGG 0.380914 1:-44196002 MsG0180002738.01.T01:CDS
ACGAGATGACGGTCGAGGTT+TGG 0.387356 1:+44197781 None:intergenic
AACTTACACATTTGGATGGT+TGG 0.391793 1:+44194525 None:intergenic
GAGATGGATGTGCAGCTCTT+TGG 0.392813 1:+44197868 None:intergenic
TGAAGATGTTCCTCAGGATA+TGG 0.407476 1:-44197623 MsG0180002738.01.T01:CDS
ACTTACACATTTGGATGGTT+GGG 0.414080 1:+44194526 None:intergenic
TTTATAAAATCTTTGAATTG+AGG 0.426183 1:+44195365 None:intergenic
TTCAACTCGTTTACCAAGGA+AGG 0.433860 1:+44195055 None:intergenic
CTTCTCAACTGTACCATTAA+GGG 0.436118 1:-44195024 MsG0180002738.01.T01:CDS
ATCTGAAATCAGACGAAGAA+TGG 0.436705 1:-44197833 MsG0180002738.01.T01:exon
CTCAATTCCTGAACAGCAGC+AGG 0.447203 1:+44197520 None:intergenic
AAAGGTGTGGAGCACTGGTT+TGG 0.450397 1:+44195432 None:intergenic
TCGCAAAAGGTGTGGAGCAC+TGG 0.455123 1:+44195427 None:intergenic
GGAAGAGCTCAATCGCTTGA+AGG 0.456032 1:-44195933 MsG0180002738.01.T01:CDS
ATTCTCAATGATCCCTTCCT+TGG 0.459914 1:-44195068 MsG0180002738.01.T01:CDS
CGACGATAACCACATCCTTA+AGG 0.465161 1:-44197719 MsG0180002738.01.T01:CDS
GGATAATCAATGATCTCTGC+TGG 0.468924 1:+44192511 None:intergenic
GCAGAATATGGTTGATGCAT+TGG 0.472142 1:-44195763 MsG0180002738.01.T01:CDS
GCAAAACTGGGATATTGCTC+TGG 0.473242 1:-44195954 MsG0180002738.01.T01:CDS
GCCAAATTTCAGTTTGAATG+TGG 0.476604 1:-44196085 MsG0180002738.01.T01:CDS
CGATCTTAGCCTTAAGGATG+TGG 0.481340 1:+44197710 None:intergenic
ATGGTTGGGTTCCATGATAA+CGG 0.488427 1:+44194540 None:intergenic
TGAAACTGGAACCGTTATCA+TGG 0.490634 1:-44194551 MsG0180002738.01.T01:CDS
CAAGGTATTGGAGTCGGACT+CGG 0.503170 1:-44192572 MsG0180002738.01.T01:CDS
TCGAGGTTTGGTGCCATTCG+CGG 0.503646 1:+44197793 None:intergenic
GAAGGAAATAATTGACTCAA+AGG 0.507072 1:-44195915 MsG0180002738.01.T01:intron
GATTGGTCCTGCACAGATAG+AGG 0.508123 1:-44196122 MsG0180002738.01.T01:CDS
GAATGCATTATGGGGAAAGC+TGG 0.508877 1:-44195993 MsG0180002738.01.T01:CDS
TCAAACTGAAGATGTTCCTC+AGG 0.511719 1:-44197629 MsG0180002738.01.T01:CDS
TCAGGATATGGTTGAACGTA+GGG 0.512113 1:-44197611 MsG0180002738.01.T01:CDS
GACGAGCATTCACATATTCA+AGG 0.516765 1:-44192598 MsG0180002738.01.T01:CDS
TATTCAAGGAGACAAGGTAT+TGG 0.517322 1:-44192584 MsG0180002738.01.T01:CDS
TCTGTGTTCTTCCATTGTCA+TGG 0.519006 1:+44195720 None:intergenic
AAGTTATTGAAATCTGGATC+AGG 0.523917 1:+44192490 None:intergenic
TATAATGCCTCTATCTGTGC+AGG 0.524788 1:+44196115 None:intergenic
TCGACAATGCATACTTGTCC+TGG 0.525032 1:+44195681 None:intergenic
TGTTCCTAGAATGTTAAATG+AGG 0.543509 1:-44192545 MsG0180002738.01.T01:CDS
CTGTGGCCAAGTATCGCAAA+AGG 0.544639 1:+44195414 None:intergenic
TCTTCGTCTGATTTCAGATG+CGG 0.546176 1:+44197837 None:intergenic
ACAAGCCAGAAACTCAGTAA+TGG 0.558600 1:+44195307 None:intergenic
TCGTGCATAATGCTCTGTAC+TGG 0.565231 1:+44196032 None:intergenic
AAGAGTCTTGTGAATGTCCA+TGG 0.565283 1:+44197654 None:intergenic
CATTTATTGTCAACAAGCGC+AGG 0.566791 1:-44195391 MsG0180002738.01.T01:CDS
ATACGATCTAACACCGCGAA+TGG 0.568274 1:-44197806 MsG0180002738.01.T01:CDS
ATTACGAGGAGGCTGAGAGA+TGG 0.570112 1:-44194621 MsG0180002738.01.T01:CDS
AGATGCGGCCACCAGCGAGA+TGG 0.570234 1:+44197852 None:intergenic
TGGCATCAAGCTTTGAGCCA+CGG 0.570397 1:+44194584 None:intergenic
AGTCAACTTACACATTTGGA+TGG 0.571682 1:+44194521 None:intergenic
AGATTTCAATAACTTTGAGA+AGG 0.573531 1:-44192482 MsG0180002738.01.T01:CDS
AGATGCTGCTGCACCTCTTG+TGG 0.575541 1:-44197557 MsG0180002738.01.T01:CDS
GAAAGACGAGATGACGGTCG+AGG 0.577365 1:+44197776 None:intergenic
GAGCTGCACATCCATCTCGC+TGG 0.580311 1:-44197863 MsG0180002738.01.T01:five_prime_UTR
CATTATGCACGAACAGCGAA+AGG 0.580502 1:-44196021 MsG0180002738.01.T01:CDS
TCAACTCGTTTACCAAGGAA+GGG 0.581833 1:+44195056 None:intergenic
GCCAAGTATCGCAAAAGGTG+TGG 0.585518 1:+44195419 None:intergenic
TTTGAATGTGGAAACTACTC+TGG 0.589555 1:-44196073 MsG0180002738.01.T01:CDS
ACGAGTTCCTTGAAAATGCT+AGG 0.595391 1:-44195001 MsG0180002738.01.T01:CDS
ATGGCGCACAAAAGAAGATG+AGG 0.600856 1:-44195262 MsG0180002738.01.T01:CDS
TGAAGTATTGATGCAAAACT+GGG 0.602113 1:-44195966 MsG0180002738.01.T01:CDS
CTGCACATCCATCTCGCTGG+TGG 0.602537 1:-44197860 MsG0180002738.01.T01:five_prime_UTR
TCGTTGATGTATCCTGCAGT+AGG 0.602989 1:+44194962 None:intergenic
AGGAGACAAGGTATTGGAGT+CGG 0.608191 1:-44192578 MsG0180002738.01.T01:CDS
CTCAGGATATGGTTGAACGT+AGG 0.609881 1:-44197612 MsG0180002738.01.T01:CDS
TTCTGAAGAAACGCCACAAG+AGG 0.610964 1:+44197544 None:intergenic
TCTTAGAGTTTCTTCAAGAG+CGG 0.617847 1:-44197750 MsG0180002738.01.T01:CDS
AGGAGTTTGAATGCATTATG+GGG 0.632385 1:-44196001 MsG0180002738.01.T01:CDS
TTATTGTCAACAAGCGCAGG+AGG 0.633199 1:-44195388 MsG0180002738.01.T01:CDS
GCTAAATTTGAATTACGAGG+AGG 0.633335 1:-44194632 MsG0180002738.01.T01:CDS
AAACATGGTTGATTACGCCA+TGG 0.633509 1:-44197671 MsG0180002738.01.T01:CDS
GATAATTGATCTGTTTAACC+AGG 0.636082 1:-44195699 MsG0180002738.01.T01:CDS
GAAGCTAAATTTGAATTACG+AGG 0.636557 1:-44194635 MsG0180002738.01.T01:CDS
AGAGTGGAAAGACGAGATGA+CGG 0.636769 1:+44197770 None:intergenic
GATACATCAACGAATTGACA+TGG 0.641261 1:-44194952 MsG0180002738.01.T01:CDS
TCTATTAAACAACACAAACA+TGG 0.649534 1:-44197686 MsG0180002738.01.T01:CDS
TTCACATATTCAAGGAGACA+AGG 0.649956 1:-44192590 MsG0180002738.01.T01:CDS
TCTTGAAGAAACTCTAAGAG+TGG 0.653300 1:+44197754 None:intergenic
TGAAATCAGACGAAGAATGG+CGG 0.657942 1:-44197830 MsG0180002738.01.T01:exon
TTTCTTCAACTCGTTTACCA+AGG 0.661725 1:+44195051 None:intergenic
ATACATCAACGAATTGACAT+GGG 0.662777 1:-44194951 MsG0180002738.01.T01:CDS
TGGCGCACAAAAGAAGATGA+GGG 0.668130 1:-44195261 MsG0180002738.01.T01:CDS
TGGATTGTGAATCTCATCCG+TGG 0.676046 1:-44194601 MsG0180002738.01.T01:CDS
CTTGTTGACAATAAATGCTG+TGG 0.698188 1:+44195397 None:intergenic
CTACGTTCAACCATATCCTG+AGG 0.701454 1:+44197613 None:intergenic
TACATCAACGAATTGACATG+GGG 0.710665 1:-44194950 MsG0180002738.01.T01:intron
AAGCCAGAAACTCAGTAATG+GGG 0.712120 1:+44195309 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTATTTTCTAAAATTATTAT+TGG - Chr1:44195947-44195966 MsG0180002738.01.T01:CDS 10.0%
!!! TGATAAACTATTTTTTTAAT+AGG + Chr1:44193710-44193729 None:intergenic 10.0%
!!! TTTTGATTAAAAACAAATTA+AGG + Chr1:44194691-44194710 None:intergenic 10.0%
! CCCCCCCCCCCCCCCCCCCC+CGG - Chr1:44194657-44194676 MsG0180002738.01.T01:intron 100.0%
! CCGGGGGGGGGGGGGGGGGG+GGG + Chr1:44194665-44194684 None:intergenic 100.0%
! CGGGGGGGGGGGGGGGGGGG+GGG + Chr1:44194664-44194683 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + Chr1:44194657-44194676 None:intergenic 100.0%
!! ATAAAATTCCAAAAAAACAA+TGG + Chr1:44194068-44194087 None:intergenic 15.0%
!! TAAAATTCCAAAAAAACAAT+GGG + Chr1:44194067-44194086 None:intergenic 15.0%
!! TCTAAATTTCTCTTATAAAT+AGG + Chr1:44197222-44197241 None:intergenic 15.0%
!! TTTATAAAATCTTTGAATTG+AGG + Chr1:44194940-44194959 None:intergenic 15.0%
!! ATGAAGCAATTCAAAAATTA+AGG + Chr1:44196083-44196102 None:intergenic 20.0%
!! ATTACGTGTATTAAACAAAA+TGG + Chr1:44196395-44196414 None:intergenic 20.0%
!! ATTATACTTGGCTAAAATAT+AGG - Chr1:44193621-44193640 MsG0180002738.01.T01:intron 20.0%
!! ATTGTAATTCCAAGTTATAA+GGG - Chr1:44197516-44197535 MsG0180002738.01.T01:CDS 20.0%
!! CTGAAAATTATATGTAACTT+TGG - Chr1:44193650-44193669 MsG0180002738.01.T01:intron 20.0%
!! TAAACTCAAAAACAGTTTAT+GGG - Chr1:44193846-44193865 MsG0180002738.01.T01:intron 20.0%
!! TAATATTAGAACTAGTATTC+TGG - Chr1:44196028-44196047 MsG0180002738.01.T01:CDS 20.0%
!! TTAAACTCAAAAACAGTTTA+TGG - Chr1:44193845-44193864 MsG0180002738.01.T01:intron 20.0%
!!! AAAATTGATTTTGAGATGTT+TGG + Chr1:44193534-44193553 None:intergenic 20.0%
!!! AAAATTGTGTTTTGCAAATT+TGG - Chr1:44196702-44196721 MsG0180002738.01.T01:intron 20.0%
!!! AAATTGTGTTTTGCAAATTT+GGG - Chr1:44196703-44196722 MsG0180002738.01.T01:intron 20.0%
!!! AATTTGCAAAACACAATTTT+TGG + Chr1:44196702-44196721 None:intergenic 20.0%
!!! AGACATGGTTTTTTTTTTAA+TGG - Chr1:44197004-44197023 MsG0180002738.01.T01:intron 20.0%
!!! ATTTGCAAAACACAATTTTT+GGG + Chr1:44196701-44196720 None:intergenic 20.0%
!!! ATTTTATTTGTGTCCTTATT+AGG - Chr1:44195153-44195172 MsG0180002738.01.T01:intron 20.0%
!!! GATGTATTTTTTTGATTGTT+GGG - Chr1:44192942-44192961 MsG0180002738.01.T01:intron 20.0%
!!! GCAACTAATTTTTTACTATA+GGG - Chr1:44195601-44195620 MsG0180002738.01.T01:intron 20.0%
!!! GTTTTTTTTTTAATGGAACT+TGG - Chr1:44197011-44197030 MsG0180002738.01.T01:intron 20.0%
!!! TACTATGATTTTATCAATGT+CGG + Chr1:44194032-44194051 None:intergenic 20.0%
!!! TAGATCAAAATTGATTTTAG+AGG - Chr1:44193199-44193218 MsG0180002738.01.T01:intron 20.0%
!!! TGAGCAATTTTTACAATAAT+TGG + Chr1:44197123-44197142 None:intergenic 20.0%
!!! TGATGTATTTTTTTGATTGT+TGG - Chr1:44192941-44192960 MsG0180002738.01.T01:intron 20.0%
!!! TTCCTAAAGAAACAATTTTA+AGG - Chr1:44197669-44197688 MsG0180002738.01.T01:CDS 20.0%
!!! TTCCTTAAAATTGTTTCTTT+AGG + Chr1:44197674-44197693 None:intergenic 20.0%
!!! TTTTACTGTTAATCAATCAT+GGG - Chr1:44197859-44197878 MsG0180002738.01.T01:five_prime_UTR 20.0%
! AAAAAACAAAATGATGCATC+CGG + Chr1:44196261-44196280 None:intergenic 25.0%
! AAATTACTTTGTTAATGTGG+AGG + Chr1:44196980-44196999 None:intergenic 25.0%
! AATAGACTATCAAAGATCAA+TGG + Chr1:44195481-44195500 None:intergenic 25.0%
! ACATTGACAGTTAAAACAAT+AGG + Chr1:44196350-44196369 None:intergenic 25.0%
! AGCAAAATCAATTCTACTTT+AGG - Chr1:44193504-44193523 MsG0180002738.01.T01:intron 25.0%
! ATAAAAGTTGTTAAACCCAA+CGG + Chr1:44195412-44195431 None:intergenic 25.0%
! ATAGTAAAAAATTAGTTGCG+TGG + Chr1:44195600-44195619 None:intergenic 25.0%
! ATTGTAAAAATTGCTCAACT+TGG - Chr1:44197126-44197145 MsG0180002738.01.T01:intron 25.0%
! ATTTCATGTCTATGTTTCAA+AGG - Chr1:44196000-44196019 MsG0180002738.01.T01:CDS 25.0%
! ATTTCTCTTATAAATAGGAC+CGG + Chr1:44197217-44197236 None:intergenic 25.0%
! CATTGTAATTCCAAGTTATA+AGG - Chr1:44197515-44197534 MsG0180002738.01.T01:CDS 25.0%
! CCAACATATCTCTTATAAAT+AGG - Chr1:44197301-44197320 MsG0180002738.01.T01:intron 25.0%
! CCTATTTATAAGAGATATGT+TGG + Chr1:44197304-44197323 None:intergenic 25.0%
! GACAAACTCGTAAAAAAATA+TGG + Chr1:44196455-44196474 None:intergenic 25.0%
! GCAAAATCAATTCTACTTTA+GGG - Chr1:44193505-44193524 MsG0180002738.01.T01:intron 25.0%
! GCATATTATAATCAACAAAG+AGG + Chr1:44195190-44195209 None:intergenic 25.0%
! GCATTTGAAAGAACTTATAT+AGG + Chr1:44193913-44193932 None:intergenic 25.0%
! TAAAATTAAAGCTGAACGTT+TGG + Chr1:44197188-44197207 None:intergenic 25.0%
! TAGATTGCATTCAAATTCAT+GGG - Chr1:44196288-44196307 MsG0180002738.01.T01:intron 25.0%
! TCTATTAAACAACACAAACA+TGG - Chr1:44192616-44192635 MsG0180002738.01.T01:intron 25.0%
! TGCAAATTACTTTGTTAATG+TGG + Chr1:44196983-44197002 None:intergenic 25.0%
! TTAGATTGCATTCAAATTCA+TGG - Chr1:44196287-44196306 MsG0180002738.01.T01:intron 25.0%
! TTATTGTATGACATAAGTAC+TGG + Chr1:44193889-44193908 None:intergenic 25.0%
! TTCTCAAAGTTATTGAAATC+TGG + Chr1:44197821-44197840 None:intergenic 25.0%
! TTGTAATTCAAGAACTTTAC+AGG + Chr1:44197603-44197622 None:intergenic 25.0%
! TTGTAATTCCAAGTTATAAG+GGG - Chr1:44197517-44197536 MsG0180002738.01.T01:CDS 25.0%
! TTTCTACCGTATTAACTTAT+GGG - Chr1:44195848-44195867 MsG0180002738.01.T01:intron 25.0%
! TTTGAATTCTGACTTCTAAA+AGG - Chr1:44194146-44194165 MsG0180002738.01.T01:intron 25.0%
!! ACGTTTGGTAATAAATTTAC+TGG + Chr1:44197173-44197192 None:intergenic 25.0%
!! AGATTTCAATAACTTTGAGA+AGG - Chr1:44197820-44197839 MsG0180002738.01.T01:exon 25.0%
!! AGGAGATTAATTGTTGATAA+AGG - Chr1:44197368-44197387 MsG0180002738.01.T01:intron 25.0%
!! CGTTTGGTAATAAATTTACT+GGG + Chr1:44197172-44197191 None:intergenic 25.0%
!! GTTTTACTGTTAATCAATCA+TGG - Chr1:44197858-44197877 MsG0180002738.01.T01:five_prime_UTR 25.0%
!! GTTTTTGATGAATGATAAGT+TGG - Chr1:44192889-44192908 MsG0180002738.01.T01:intron 25.0%
!! TAAAAACAAATTAAGGCATC+CGG + Chr1:44194684-44194703 None:intergenic 25.0%
!! TTTTCCTCATTTAACATTCT+AGG + Chr1:44197764-44197783 None:intergenic 25.0%
!! TTTTTCATCACCTTTAAATC+AGG - Chr1:44194510-44194529 MsG0180002738.01.T01:intron 25.0%
!!! AGCTTTAATTTTACTACATC+CGG - Chr1:44197195-44197214 MsG0180002738.01.T01:intron 25.0%
!!! ATTGTTGGGTTTTTTTCTAT+TGG - Chr1:44192956-44192975 MsG0180002738.01.T01:intron 25.0%
!!! CACGAATAATTTTAACGTTT+TGG + Chr1:44196875-44196894 None:intergenic 25.0%
!!! CGCAACTAATTTTTTACTAT+AGG - Chr1:44195600-44195619 MsG0180002738.01.T01:intron 25.0%
!!! GATTTTGTAAAATGAGTTGA+TGG - Chr1:44193360-44193379 MsG0180002738.01.T01:intron 25.0%
!!! TAATTTTAACGTTTTGGTCT+TGG + Chr1:44196869-44196888 None:intergenic 25.0%
!!! TTGTTTTTCTTCTAGAAGTT+CGG - Chr1:44194112-44194131 MsG0180002738.01.T01:intron 25.0%
AAAAACAAAATGATGCATCC+GGG + Chr1:44196260-44196279 None:intergenic 30.0%
AAAAGGATGATTCTACAGAT+TGG - Chr1:44194163-44194182 MsG0180002738.01.T01:intron 30.0%
AAAGGAGTTTGAATGCATTA+TGG - Chr1:44194299-44194318 MsG0180002738.01.T01:intron 30.0%
AACACATACTTTGACATTCT+TGG - Chr1:44193318-44193337 MsG0180002738.01.T01:intron 30.0%
AAGGAGTTTGAATGCATTAT+GGG - Chr1:44194300-44194319 MsG0180002738.01.T01:intron 30.0%
AAGTTATTGAAATCTGGATC+AGG + Chr1:44197815-44197834 None:intergenic 30.0%
AATTCCAAAAAAACAATGGG+AGG + Chr1:44194064-44194083 None:intergenic 30.0%
ACAAAGTCAACTTACACATT+TGG + Chr1:44195788-44195807 None:intergenic 30.0%
ACAAGAGCAGAATTCATATA+AGG - Chr1:44194969-44194988 MsG0180002738.01.T01:CDS 30.0%
AGAAAAACAACCTTCAAGTA+AGG + Chr1:44196320-44196339 None:intergenic 30.0%
ATACATCAACGAATTGACAT+GGG - Chr1:44195351-44195370 MsG0180002738.01.T01:CDS 30.0%
ATCCTAGAAACAAAGGAAAA+AGG + Chr1:44196060-44196079 None:intergenic 30.0%
ATTAAGGATCCTAGAAACAA+AGG + Chr1:44196067-44196086 None:intergenic 30.0%
CAAACTGAAATTTGGCATAT+TGG + Chr1:44194213-44194232 None:intergenic 30.0%
CAGTACAAAATCTATGTGAT+TGG + Chr1:44196608-44196627 None:intergenic 30.0%
CGTTAAAATTATTCGTGCAT+TGG - Chr1:44196878-44196897 MsG0180002738.01.T01:intron 30.0%
CTTTCTACCGTATTAACTTA+TGG - Chr1:44195847-44195866 MsG0180002738.01.T01:intron 30.0%
GAAGCTAAATTTGAATTACG+AGG - Chr1:44195667-44195686 MsG0180002738.01.T01:intron 30.0%
GAATCAAAATCTATGAAGCA+GGG - Chr1:44193056-44193075 MsG0180002738.01.T01:intron 30.0%
GATAATTGATCTGTTTAACC+AGG - Chr1:44194603-44194622 MsG0180002738.01.T01:CDS 30.0%
GATGCTTAATGACAAATATC+AGG - Chr1:44192829-44192848 MsG0180002738.01.T01:intron 30.0%
GATTCAAGTAGAATCATTTC+TGG - Chr1:44193480-44193499 MsG0180002738.01.T01:intron 30.0%
GTAATGCTGAGAATTATACT+TGG - Chr1:44193609-44193628 MsG0180002738.01.T01:intron 30.0%
GTATTGAATAAAGAAAAGCG+AGG - Chr1:44197541-44197560 MsG0180002738.01.T01:CDS 30.0%
TATGTAGAATTGTGTATGCT+TGG - Chr1:44193019-44193038 MsG0180002738.01.T01:intron 30.0%
TATGTCAACTATGACTTTGA+TGG - Chr1:44195021-44195040 MsG0180002738.01.T01:CDS 30.0%
TCCACATTCAAACTGAAATT+TGG + Chr1:44194221-44194240 None:intergenic 30.0%
TGAAACATAGACATGAAATC+TGG + Chr1:44195999-44196018 None:intergenic 30.0%
TGTATGTAAGGTTTCACTTT+AGG + Chr1:44193581-44193600 None:intergenic 30.0%
TGTTCCTAGAATGTTAAATG+AGG - Chr1:44197757-44197776 MsG0180002738.01.T01:CDS 30.0%
TTCTACCGTATTAACTTATG+GGG - Chr1:44195849-44195868 MsG0180002738.01.T01:intron 30.0%
! AAAAACAAATTAAGGCATCC+GGG + Chr1:44194683-44194702 None:intergenic 30.0%
! AAAGCCCTTATTTATCAAGT+CGG + Chr1:44195814-44195833 None:intergenic 30.0%
! AAATCTATGTGATTGGTCAT+AGG + Chr1:44196601-44196620 None:intergenic 30.0%
! ACTTAATTGATGATTCTCTC+TGG - Chr1:44195556-44195575 MsG0180002738.01.T01:intron 30.0%
! ATGGTAATGCGATTTATGTT+TGG - Chr1:44193379-44193398 MsG0180002738.01.T01:intron 30.0%
! ATTACCTGCATTTTTGCAAA+TGG + Chr1:44195216-44195235 None:intergenic 30.0%
! CAAAGTAATTTGCATAGACA+TGG - Chr1:44196989-44197008 MsG0180002738.01.T01:intron 30.0%
! GAAGGAAATAATTGACTCAA+AGG - Chr1:44194387-44194406 MsG0180002738.01.T01:intron 30.0%
! GTTTTTGTAGTTAATCTGCA+TGG - Chr1:44194727-44194746 MsG0180002738.01.T01:intron 30.0%
! TTACCCGACTTGATAAATAA+GGG - Chr1:44195807-44195826 MsG0180002738.01.T01:intron 30.0%
!! ACTAGCAAGAAAGCATTTAA+GGG + Chr1:44193935-44193954 None:intergenic 30.0%
!! ATCCTTTTTCCTTTGTTTCT+AGG - Chr1:44196055-44196074 MsG0180002738.01.T01:CDS 30.0%
!! CAATTTTGATCTATGAAGCA+CGG + Chr1:44193192-44193211 None:intergenic 30.0%
!! CTGTTATTGACTTAGATCTT+GGG - Chr1:44193967-44193986 MsG0180002738.01.T01:intron 30.0%
!! TAAGGGCTTTTATAGTCTTA+TGG - Chr1:44195824-44195843 MsG0180002738.01.T01:intron 30.0%
!! TCAACAAAAGTTGATGTAAC+TGG - Chr1:44197242-44197261 MsG0180002738.01.T01:intron 30.0%
!! TGAAGTATTGATGCAAAACT+GGG - Chr1:44194336-44194355 MsG0180002738.01.T01:intron 30.0%
!! TGATAAGTTGGTAATTAAGC+AGG - Chr1:44192901-44192920 MsG0180002738.01.T01:intron 30.0%
!! TTGTTGATAAAGGAGCTTTT+TGG - Chr1:44197378-44197397 MsG0180002738.01.T01:intron 30.0%
!!! ATATCCTCCCATTGTTTTTT+TGG - Chr1:44194057-44194076 MsG0180002738.01.T01:intron 30.0%
!!! ATCTTTTTCAACCATGACAA+TGG - Chr1:44194571-44194590 MsG0180002738.01.T01:CDS 30.0%
!!! TTTGTACTGTTTCTGCATTT+TGG - Chr1:44196619-44196638 MsG0180002738.01.T01:intron 30.0%
AAAACAAAATGATGCATCCG+GGG + Chr1:44196259-44196278 None:intergenic 35.0%
AAAGTTTCATTGAACACGCT+AGG + Chr1:44196936-44196955 None:intergenic 35.0%
AACTTACACATTTGGATGGT+TGG + Chr1:44195780-44195799 None:intergenic 35.0%
AATTCTCAGCATTACAGTCA+TGG + Chr1:44193604-44193623 None:intergenic 35.0%
ACTTACACATTTGGATGGTT+GGG + Chr1:44195779-44195798 None:intergenic 35.0%
ACTTCTCAACTGTACCATTA+AGG - Chr1:44195277-44195296 MsG0180002738.01.T01:CDS 35.0%
AGGAGTTTGAATGCATTATG+GGG - Chr1:44194301-44194320 MsG0180002738.01.T01:intron 35.0%
AGTCAACTTACACATTTGGA+TGG + Chr1:44195784-44195803 None:intergenic 35.0%
AGTTCTTAATACGACGTTGT+TGG - Chr1:44197336-44197355 MsG0180002738.01.T01:intron 35.0%
ATTAAATTAGCCCTTCCATG+AGG - Chr1:44196663-44196682 MsG0180002738.01.T01:intron 35.0%
CGACATTTGTAGCAGATATT+AGG + Chr1:44195384-44195403 None:intergenic 35.0%
CTCTTATAAATAGGACCAGA+GGG - Chr1:44197310-44197329 MsG0180002738.01.T01:intron 35.0%
CTTACCATTTGCAAAAATGC+AGG - Chr1:44195209-44195228 MsG0180002738.01.T01:intron 35.0%
CTTCTCAACTGTACCATTAA+GGG - Chr1:44195278-44195297 MsG0180002738.01.T01:CDS 35.0%
CTTGTTGACAATAAATGCTG+TGG + Chr1:44194908-44194927 None:intergenic 35.0%
GAATTCGTTGTTTGTGGTAA+TGG + Chr1:44196842-44196861 None:intergenic 35.0%
GATACATCAACGAATTGACA+TGG - Chr1:44195350-44195369 MsG0180002738.01.T01:CDS 35.0%
GCCAAATTTCAGTTTGAATG+TGG - Chr1:44194217-44194236 MsG0180002738.01.T01:intron 35.0%
GCTAAATTTGAATTACGAGG+AGG - Chr1:44195670-44195689 MsG0180002738.01.T01:intron 35.0%
GGAATCAAAATCTATGAAGC+AGG - Chr1:44193055-44193074 MsG0180002738.01.T01:intron 35.0%
GGTACTTTAACACCATTCAT+TGG - Chr1:44196797-44196816 MsG0180002738.01.T01:intron 35.0%
GGTGAAGCAAATACCTAATA+AGG + Chr1:44195169-44195188 None:intergenic 35.0%
TAAATGCTTTCTTGCTAGTG+AGG - Chr1:44193936-44193955 MsG0180002738.01.T01:intron 35.0%
TACATCAACGAATTGACATG+GGG - Chr1:44195352-44195371 MsG0180002738.01.T01:CDS 35.0%
TATTCAAGGAGACAAGGTAT+TGG - Chr1:44197718-44197737 MsG0180002738.01.T01:CDS 35.0%
TCAATACTCCCCTTATAACT+TGG + Chr1:44197528-44197547 None:intergenic 35.0%
TCTCTTATAAATAGGACCAG+AGG - Chr1:44197309-44197328 MsG0180002738.01.T01:intron 35.0%
TCTTAGAGTTTCTTCAAGAG+CGG - Chr1:44192552-44192571 MsG0180002738.01.T01:CDS 35.0%
TGATGTATGATATCATGTCC+AGG - Chr1:44194833-44194852 MsG0180002738.01.T01:intron 35.0%
TTACAGTCATGGTGTATGTA+AGG + Chr1:44193593-44193612 None:intergenic 35.0%
TTCACATATTCAAGGAGACA+AGG - Chr1:44197712-44197731 MsG0180002738.01.T01:CDS 35.0%
TTGGATAGCATTAAGATACC+TGG + Chr1:44194854-44194873 None:intergenic 35.0%
TTTCTTCAACTCGTTTACCA+AGG + Chr1:44195254-44195273 None:intergenic 35.0%
TTTGAATGTGGAAACTACTC+TGG - Chr1:44194229-44194248 MsG0180002738.01.T01:intron 35.0%
! AAAACAAATTAAGGCATCCG+GGG + Chr1:44194682-44194701 None:intergenic 35.0%
! AAGCCCTTATTTATCAAGTC+GGG + Chr1:44195813-44195832 None:intergenic 35.0%
! ATCTGAAATCAGACGAAGAA+TGG - Chr1:44192469-44192488 MsG0180002738.01.T01:CDS 35.0%
! ATTGGTTTCTTGTGTCAGTT+CGG - Chr1:44195965-44195984 MsG0180002738.01.T01:CDS 35.0%
! GACTATTTCTTGCATGTTCT+AGG - Chr1:44194784-44194803 MsG0180002738.01.T01:intron 35.0%
! GGAGTCAAAATTGATTCTAG+AGG + Chr1:44193560-44193579 None:intergenic 35.0%
! GTTACCCGACTTGATAAATA+AGG - Chr1:44195806-44195825 MsG0180002738.01.T01:intron 35.0%
! GTTTTGCATCAATACTTCAG+CGG + Chr1:44194335-44194354 None:intergenic 35.0%
! TAAACAGCCTAGCATTTTCA+AGG + Chr1:44195311-44195330 None:intergenic 35.0%
! TAATGGAACTTGGTGAGAAT+TGG - Chr1:44197021-44197040 MsG0180002738.01.T01:intron 35.0%
! TCCAGTTTCAGAGTCAATTT+TGG + Chr1:44195741-44195760 None:intergenic 35.0%
! TCTTGAAGAAACTCTAAGAG+TGG + Chr1:44192551-44192570 None:intergenic 35.0%
! TGTAATCATAAGTGTCGTGT+CGG + Chr1:44193121-44193140 None:intergenic 35.0%
! TTATCAATGTCGGCTAAAAG+TGG + Chr1:44194022-44194041 None:intergenic 35.0%
! TTTTGAATTGCTTCATGTCC+AGG - Chr1:44196087-44196106 MsG0180002738.01.T01:CDS 35.0%
!! ATAGATCGATCTTAGCCTTA+AGG + Chr1:44192601-44192620 None:intergenic 35.0%
!! ATATGTAACTTTGGAACGCT+AGG - Chr1:44193659-44193678 MsG0180002738.01.T01:intron 35.0%
!! CACTAGCAAGAAAGCATTTA+AGG + Chr1:44193936-44193955 None:intergenic 35.0%
!! CTGAAGTATTGATGCAAAAC+TGG - Chr1:44194335-44194354 MsG0180002738.01.T01:intron 35.0%
!! GCTGTTATTGACTTAGATCT+TGG - Chr1:44193966-44193985 MsG0180002738.01.T01:intron 35.0%
!!! TTATTTTTGAGACCTACTGC+AGG - Chr1:44195328-44195347 MsG0180002738.01.T01:CDS 35.0%
AAACATGGTTGATTACGCCA+TGG - Chr1:44192631-44192650 MsG0180002738.01.T01:intron 40.0%
AAGCCAGAAACTCAGTAATG+GGG + Chr1:44194996-44195015 None:intergenic 40.0%
AATACGACGTTGTTGGAAAG+TGG - Chr1:44197343-44197362 MsG0180002738.01.T01:intron 40.0%
ACAAATGTCGTACTACCGTT+GGG - Chr1:44195394-44195413 MsG0180002738.01.T01:CDS 40.0%
ACAACCAAGTATGAGGAAGA+AGG - Chr1:44197413-44197432 MsG0180002738.01.T01:intron 40.0%
ACAAGCCAGAAACTCAGTAA+TGG + Chr1:44194998-44195017 None:intergenic 40.0%
ACGAGTTCCTTGAAAATGCT+AGG - Chr1:44195301-44195320 MsG0180002738.01.T01:CDS 40.0%
ACTTGTAAGTACGGACGTTA+AGG + Chr1:44196142-44196161 None:intergenic 40.0%
AGTGTTTGTTCTATCTTCCC+CGG - Chr1:44196239-44196258 MsG0180002738.01.T01:intron 40.0%
ATCAGGTGCAAAGCAGAATA+TGG - Chr1:44194527-44194546 MsG0180002738.01.T01:intron 40.0%
ATGGTTGGGTTCCATGATAA+CGG + Chr1:44195765-44195784 None:intergenic 40.0%
ATTCTCAATGATCCCTTCCT+TGG - Chr1:44195234-44195253 MsG0180002738.01.T01:intron 40.0%
ATTGAACACGCTAGGTTCAA+AGG + Chr1:44196928-44196947 None:intergenic 40.0%
CAAGCCAGAAACTCAGTAAT+GGG + Chr1:44194997-44195016 None:intergenic 40.0%
CAGTTACTACATGTCTTGTG+TGG + Chr1:44193791-44193810 None:intergenic 40.0%
CATTTATTGTCAACAAGCGC+AGG - Chr1:44194911-44194930 MsG0180002738.01.T01:intron 40.0%
CTGCTTTGCACCTGATTTAA+AGG + Chr1:44194523-44194542 None:intergenic 40.0%
CTTGTAAGTACGGACGTTAA+GGG + Chr1:44196141-44196160 None:intergenic 40.0%
GACGAGCATTCACATATTCA+AGG - Chr1:44197704-44197723 MsG0180002738.01.T01:CDS 40.0%
GAGTGACCAACTTGTAAGTA+CGG + Chr1:44196151-44196170 None:intergenic 40.0%
GAGTGCCCCATAAGTTAATA+CGG + Chr1:44195857-44195876 None:intergenic 40.0%
GGATAATCAATGATCTCTGC+TGG + Chr1:44197794-44197813 None:intergenic 40.0%
GGTGAAGAATTCGTTGTTTG+TGG + Chr1:44196848-44196867 None:intergenic 40.0%
GTATTAAGAACTACTCCCTC+TGG + Chr1:44197328-44197347 None:intergenic 40.0%
GTATTGTTTGCCTGAAAGTG+AGG - Chr1:44193259-44193278 MsG0180002738.01.T01:intron 40.0%
GTGGAATTGGAATTCAGGTA+GGG + Chr1:44196766-44196785 None:intergenic 40.0%
TAACGTCCGTACTTACAAGT+TGG - Chr1:44196142-44196161 MsG0180002738.01.T01:intron 40.0%
TACAAATGTCGTACTACCGT+TGG - Chr1:44195393-44195412 MsG0180002738.01.T01:CDS 40.0%
TATAATGCCTCTATCTGTGC+AGG + Chr1:44194190-44194209 None:intergenic 40.0%
TCAAACTGAAGATGTTCCTC+AGG - Chr1:44192673-44192692 MsG0180002738.01.T01:intron 40.0%
TCAACTCGTTTACCAAGGAA+GGG + Chr1:44195249-44195268 None:intergenic 40.0%
TCAGGATATGGTTGAACGTA+GGG - Chr1:44192691-44192710 MsG0180002738.01.T01:intron 40.0%
TCTGTGTTCTTCCATTGTCA+TGG + Chr1:44194585-44194604 None:intergenic 40.0%
TCTTCGTCTGATTTCAGATG+CGG + Chr1:44192468-44192487 None:intergenic 40.0%
TCTTGTTCACCTGGAAAAAC+AGG - Chr1:44195441-44195460 MsG0180002738.01.T01:CDS 40.0%
TGAAACTGGAACCGTTATCA+TGG - Chr1:44195751-44195770 MsG0180002738.01.T01:CDS 40.0%
TGAAATCAGACGAAGAATGG+CGG - Chr1:44192472-44192491 MsG0180002738.01.T01:CDS 40.0%
TGAAGATGTTCCTCAGGATA+TGG - Chr1:44192679-44192698 MsG0180002738.01.T01:intron 40.0%
TGGGATGTAACCTTACTTGA+AGG - Chr1:44196307-44196326 MsG0180002738.01.T01:intron 40.0%
TTAACACCATTCATTGGCCA+AGG - Chr1:44196803-44196822 MsG0180002738.01.T01:intron 40.0%
TTCAACTCGTTTACCAAGGA+AGG + Chr1:44195250-44195269 None:intergenic 40.0%
! AAACAAATTAAGGCATCCGG+GGG + Chr1:44194681-44194700 None:intergenic 40.0%
! AAGAGTCTTGTGAATGTCCA+TGG + Chr1:44192651-44192670 None:intergenic 40.0%
! AGTTCTGACAACCAAGTATG+AGG - Chr1:44197406-44197425 MsG0180002738.01.T01:intron 40.0%
! AGTTTGTCTGCTGCGATTTT+CGG - Chr1:44196467-44196486 MsG0180002738.01.T01:intron 40.0%
! ATTGATGATTCTCTCTGGTC+TGG - Chr1:44195561-44195580 MsG0180002738.01.T01:intron 40.0%
! GCAGAATATGGTTGATGCAT+TGG - Chr1:44194539-44194558 MsG0180002738.01.T01:CDS 40.0%
! GTTAAAGTACCTATTGCCAG+AGG + Chr1:44196788-44196807 None:intergenic 40.0%
! TGTATGCTTGGTCACACTTT+TGG - Chr1:44193031-44193050 MsG0180002738.01.T01:intron 40.0%
! TTTTTCCAGGTGAACAAGAG+AGG + Chr1:44195440-44195459 None:intergenic 40.0%
!! GCCAAAATTGACTCTGAAAC+TGG - Chr1:44195737-44195756 MsG0180002738.01.T01:CDS 40.0%
!! TGAGTTGAATTTTGCAGTGG+CGG + Chr1:44196502-44196521 None:intergenic 40.0%
!! TGGTGAGTTGAATTTTGCAG+TGG + Chr1:44196505-44196524 None:intergenic 40.0%
!!! CACATGGACTTGTTTTGGTT+GGG + Chr1:44196743-44196762 None:intergenic 40.0%
AATTGCATGCTTCCTCTCTC+TGG - Chr1:44194759-44194778 MsG0180002738.01.T01:intron 45.0%
ACCAAGTATGAGGAAGAAGG+TGG - Chr1:44197416-44197435 MsG0180002738.01.T01:intron 45.0%
AGAAATAGTCACCCAGAGAG+AGG + Chr1:44194774-44194793 None:intergenic 45.0%
AGAGTGGAAAGACGAGATGA+CGG + Chr1:44192535-44192554 None:intergenic 45.0%
ATAAGCCTCTCTTGTTCACC+TGG - Chr1:44195432-44195451 MsG0180002738.01.T01:CDS 45.0%
ATACGATCTAACACCGCGAA+TGG - Chr1:44192496-44192515 MsG0180002738.01.T01:CDS 45.0%
ATGAGGAAGAAGGTGGCATT+AGG - Chr1:44197423-44197442 MsG0180002738.01.T01:intron 45.0%
ATGGCGCACAAAAGAAGATG+AGG - Chr1:44195040-44195059 MsG0180002738.01.T01:CDS 45.0%
ATGGTGACTTTGCTTTGCCT+TGG + Chr1:44196823-44196842 None:intergenic 45.0%
ATTATTGCCCGTGTTGTGTC+CGG - Chr1:44193163-44193182 MsG0180002738.01.T01:intron 45.0%
ATTGCATGCTTCCTCTCTCT+GGG - Chr1:44194760-44194779 MsG0180002738.01.T01:intron 45.0%
CAGAGGTGGAATTGGAATTC+AGG + Chr1:44196771-44196790 None:intergenic 45.0%
CAGCATGACAAGCAAGAAAG+TGG + Chr1:44194442-44194461 None:intergenic 45.0%
CATTATGCACGAACAGCGAA+AGG - Chr1:44194281-44194300 MsG0180002738.01.T01:intron 45.0%
CGACGATAACCACATCCTTA+AGG - Chr1:44192583-44192602 MsG0180002738.01.T01:CDS 45.0%
CTACGTTCAACCATATCCTG+AGG + Chr1:44192692-44192711 None:intergenic 45.0%
CTAGGTAGACTGTTTGACTG+AGG - Chr1:44196214-44196233 MsG0180002738.01.T01:intron 45.0%
CTCAGGATATGGTTGAACGT+AGG - Chr1:44192690-44192709 MsG0180002738.01.T01:intron 45.0%
CTGAATTCCAATTCCACCTC+TGG - Chr1:44196769-44196788 MsG0180002738.01.T01:intron 45.0%
CTTTCCACTACACTGATGTC+TGG + Chr1:44197459-44197478 None:intergenic 45.0%
GAATGCATTATGGGGAAAGC+TGG - Chr1:44194309-44194328 MsG0180002738.01.T01:intron 45.0%
GATCAATGGCACAGAAGTTG+AGG + Chr1:44195467-44195486 None:intergenic 45.0%
GCAAAACTGGGATATTGCTC+TGG - Chr1:44194348-44194367 MsG0180002738.01.T01:intron 45.0%
GCAGCTGATAGACCATACAA+AGG - Chr1:44196115-44196134 MsG0180002738.01.T01:CDS 45.0%
GGTGGAATTGGAATTCAGGT+AGG + Chr1:44196767-44196786 None:intergenic 45.0%
TACAAGTGCCAGTGTTGTGT+GGG + Chr1:44195910-44195929 None:intergenic 45.0%
TAGCCCTTCCATGAGGATTA+GGG - Chr1:44196670-44196689 MsG0180002738.01.T01:intron 45.0%
TCAAGGAACTCGTCCCTTAA+TGG + Chr1:44195294-44195313 None:intergenic 45.0%
TCGACAATGCATACTTGTCC+TGG + Chr1:44194624-44194643 None:intergenic 45.0%
TCGTGCATAATGCTCTGTAC+TGG + Chr1:44194273-44194292 None:intergenic 45.0%
TCGTTGATGTATCCTGCAGT+AGG + Chr1:44195343-44195362 None:intergenic 45.0%
TGAGGACACGCACATTTGTT+GGG - Chr1:44193277-44193296 MsG0180002738.01.T01:intron 45.0%
TGGATTGTGAATCTCATCCG+TGG - Chr1:44195701-44195720 MsG0180002738.01.T01:CDS 45.0%
TGGCGCACAAAAGAAGATGA+GGG - Chr1:44195041-44195060 MsG0180002738.01.T01:CDS 45.0%
TTAGCCCTTCCATGAGGATT+AGG - Chr1:44196669-44196688 MsG0180002738.01.T01:intron 45.0%
TTATTGTCAACAAGCGCAGG+AGG - Chr1:44194914-44194933 MsG0180002738.01.T01:intron 45.0%
! AAAGTACCTATTGCCAGAGG+TGG + Chr1:44196785-44196804 None:intergenic 45.0%
! AACAAATTAAGGCATCCGGG+GGG + Chr1:44194680-44194699 None:intergenic 45.0%
! ACGCACATTTGTTGGGCATT+TGG - Chr1:44193284-44193303 MsG0180002738.01.T01:intron 45.0%
! AGAGAATATGAGTTGAGCCC+GGG - Chr1:44197574-44197593 MsG0180002738.01.T01:CDS 45.0%
! ATGCTTGGTCACACTTTTGG+CGG - Chr1:44193034-44193053 MsG0180002738.01.T01:intron 45.0%
! GAGAGAATATGAGTTGAGCC+CGG - Chr1:44197573-44197592 MsG0180002738.01.T01:CDS 45.0%
! TCCACACCTTTTGCGATACT+TGG - Chr1:44194882-44194901 MsG0180002738.01.T01:intron 45.0%
! TTCTGAAGAAACGCCACAAG+AGG + Chr1:44192761-44192780 None:intergenic 45.0%
!! AAGTTGAGGCCTGTTTTTCC+AGG + Chr1:44195453-44195472 None:intergenic 45.0%
!! ACTTTGGAACGCTAGGTGTT+TGG - Chr1:44193666-44193685 MsG0180002738.01.T01:intron 45.0%
!! AGGAGACAAGGTATTGGAGT+CGG - Chr1:44197724-44197743 MsG0180002738.01.T01:CDS 45.0%
!! CAAGTTGGTCACTCAACTTC+TGG - Chr1:44196157-44196176 MsG0180002738.01.T01:intron 45.0%
!! CGATCTTAGCCTTAAGGATG+TGG + Chr1:44192595-44192614 None:intergenic 45.0%
!! TAGGGCACATGGACTTGTTT+TGG + Chr1:44196748-44196767 None:intergenic 45.0%
!!! GCACATGGACTTGTTTTGGT+TGG + Chr1:44196744-44196763 None:intergenic 45.0%
!! AATAAATAATTAATTAATGT+TGG - Chr1:44194470-44194489 MsG0180002738.01.T01:intron 5.0%
AAGAACTTTACAGGCAGCCC+GGG + Chr1:44197594-44197613 None:intergenic 50.0%
AAGGTGGCATTAGGCATGGT+GGG - Chr1:44197432-44197451 MsG0180002738.01.T01:intron 50.0%
AGAGCCCTAATCCTCATGGA+AGG + Chr1:44196677-44196696 None:intergenic 50.0%
ATGTGCGTGTCCTCACTTTC+AGG + Chr1:44193272-44193291 None:intergenic 50.0%
ATTACGAGGAGGCTGAGAGA+TGG - Chr1:44195681-44195700 MsG0180002738.01.T01:intron 50.0%
CAAGAACTTTACAGGCAGCC+CGG + Chr1:44197595-44197614 None:intergenic 50.0%
CCAAGTATCCCACACAACAC+TGG - Chr1:44195899-44195918 MsG0180002738.01.T01:intron 50.0%
CCAATTCCACCTCTGGCAAT+AGG - Chr1:44196776-44196795 MsG0180002738.01.T01:intron 50.0%
CCAGTGTTGTGTGGGATACT+TGG + Chr1:44195902-44195921 None:intergenic 50.0%
CCTATTGCCAGAGGTGGAAT+TGG + Chr1:44196779-44196798 None:intergenic 50.0%
CTACAAGTGCCAGTGTTGTG+TGG + Chr1:44195911-44195930 None:intergenic 50.0%
CTCAATTCCTGAACAGCAGC+AGG + Chr1:44192785-44192804 None:intergenic 50.0%
GAAGAAGGTGGCATTAGGCA+TGG - Chr1:44197428-44197447 MsG0180002738.01.T01:intron 50.0%
GACGTTGTTGGAAAGTGGTG+AGG - Chr1:44197348-44197367 MsG0180002738.01.T01:intron 50.0%
GAGATGGATGTGCAGCTCTT+TGG + Chr1:44192437-44192456 None:intergenic 50.0%
GAGCCCTAATCCTCATGGAA+GGG + Chr1:44196676-44196695 None:intergenic 50.0%
GATCTATGAAGCACGGACAC+CGG + Chr1:44193185-44193204 None:intergenic 50.0%
GCCACCTTCTTCCTCATACT+TGG + Chr1:44197420-44197439 None:intergenic 50.0%
GCTTTGCCTTGGCCAATGAA+TGG + Chr1:44196812-44196831 None:intergenic 50.0%
GGAAGAGCTCAATCGCTTGA+AGG - Chr1:44194369-44194388 MsG0180002738.01.T01:intron 50.0%
GGACCCCATTACTGAGTTTC+TGG - Chr1:44194990-44195009 MsG0180002738.01.T01:CDS 50.0%
GGACGTTAAGGGCCTTTGTA+TGG + Chr1:44196130-44196149 None:intergenic 50.0%
GGCAGCTCGTTAAACTGTCT+AGG - Chr1:44196196-44196215 MsG0180002738.01.T01:intron 50.0%
GTCTATCAGCTGCTCATACC+TGG + Chr1:44196108-44196127 None:intergenic 50.0%
GTGAGGACACGCACATTTGT+TGG - Chr1:44193276-44193295 MsG0180002738.01.T01:intron 50.0%
TATGAAGCAGGGACACTCCT+CGG - Chr1:44193067-44193086 MsG0180002738.01.T01:intron 50.0%
TCAGAATCCTGCTGCTGTTC+AGG - Chr1:44192775-44192794 MsG0180002738.01.T01:intron 50.0%
TGGAATTCAGGTAGGGCACA+TGG + Chr1:44196759-44196778 None:intergenic 50.0%
! ACAAATTAAGGCATCCGGGG+GGG + Chr1:44194679-44194698 None:intergenic 50.0%
! CATAAGTGTCGTGTCGGTGT+CGG + Chr1:44193115-44193134 None:intergenic 50.0%
! CTGTGGCCAAGTATCGCAAA+AGG + Chr1:44194891-44194910 None:intergenic 50.0%
! GATTGGTCCTGCACAGATAG+AGG - Chr1:44194180-44194199 MsG0180002738.01.T01:intron 50.0%
! GCCAAGTATCGCAAAAGGTG+TGG + Chr1:44194886-44194905 None:intergenic 50.0%
! TCTGGAACAAGCACAAGCTC+AGG - Chr1:44196175-44196194 MsG0180002738.01.T01:intron 50.0%
!! AAAGGTGTGGAGCACTGGTT+TGG + Chr1:44194873-44194892 None:intergenic 50.0%
!! CAAGGTATTGGAGTCGGACT+CGG - Chr1:44197730-44197749 MsG0180002738.01.T01:CDS 50.0%
!! TGGCATCAAGCTTTGAGCCA+CGG + Chr1:44195721-44195740 None:intergenic 50.0%
AGATGCTGCTGCACCTCTTG+TGG - Chr1:44192745-44192764 MsG0180002738.01.T01:intron 55.0%
GAAGGTGGCATTAGGCATGG+TGG - Chr1:44197431-44197450 MsG0180002738.01.T01:intron 55.0%
GGGAAGAGCCCTAATCCTCA+TGG + Chr1:44196681-44196700 None:intergenic 55.0%
GGGTCCAGACATCAGTGTAG+TGG - Chr1:44197452-44197471 MsG0180002738.01.T01:intron 55.0%
TGCAGTGCAGAGTTGAGCTC+TGG + Chr1:44196525-44196544 None:intergenic 55.0%
! AAATTAAGGCATCCGGGGGG+GGG + Chr1:44194677-44194696 None:intergenic 55.0%
! ACGAGATGACGGTCGAGGTT+TGG + Chr1:44192524-44192543 None:intergenic 55.0%
! CAAATTAAGGCATCCGGGGG+GGG + Chr1:44194678-44194697 None:intergenic 55.0%
! GAAAGACGAGATGACGGTCG+AGG + Chr1:44192529-44192548 None:intergenic 55.0%
! TCGCAAAAGGTGTGGAGCAC+TGG + Chr1:44194878-44194897 None:intergenic 55.0%
!! TCGAGGTTTGGTGCCATTCG+CGG + Chr1:44192512-44192531 None:intergenic 55.0%
ACGGACACCGGACACAACAC+GGG + Chr1:44193173-44193192 None:intergenic 60.0%
CACGGACACCGGACACAACA+CGG + Chr1:44193174-44193193 None:intergenic 60.0%
CTGCACATCCATCTCGCTGG+TGG - Chr1:44192442-44192461 MsG0180002738.01.T01:CDS 60.0%
GAGCTGCACATCCATCTCGC+TGG - Chr1:44192439-44192458 MsG0180002738.01.T01:CDS 60.0%
GCAGGGACACTCCTCGGATT+AGG - Chr1:44193073-44193092 MsG0180002738.01.T01:intron 60.0%
GGATTAGGCGTGTCCCGTGT+CGG - Chr1:44193088-44193107 MsG0180002738.01.T01:intron 60.0%
! AATTAAGGCATCCGGGGGGG+GGG + Chr1:44194676-44194695 None:intergenic 60.0%
AGATGCGGCCACCAGCGAGA+TGG + Chr1:44192453-44192472 None:intergenic 65.0%
CACGGGACACGCCTAATCCG+AGG + Chr1:44193087-44193106 None:intergenic 65.0%
! ATTAAGGCATCCGGGGGGGG+GGG + Chr1:44194675-44194694 None:intergenic 65.0%
!! GTGTCGGTGTCGGTCCGACA+CGG + Chr1:44193105-44193124 None:intergenic 65.0%
!! TGTCGGTGTCGGTCCGACAC+GGG + Chr1:44193104-44193123 None:intergenic 65.0%
! TTAAGGCATCCGGGGGGGGG+GGG + Chr1:44194674-44194693 None:intergenic 70.0%
! TAAGGCATCCGGGGGGGGGG+GGG + Chr1:44194673-44194692 None:intergenic 75.0%
!! AAGGCATCCGGGGGGGGGGG+GGG + Chr1:44194672-44194691 None:intergenic 80.0%
! AGGCATCCGGGGGGGGGGGG+GGG + Chr1:44194671-44194690 None:intergenic 85.0%
! ATCCGGGGGGGGGGGGGGGG+GGG + Chr1:44194667-44194686 None:intergenic 90.0%
! CATCCGGGGGGGGGGGGGGG+GGG + Chr1:44194668-44194687 None:intergenic 90.0%
! GCATCCGGGGGGGGGGGGGG+GGG + Chr1:44194669-44194688 None:intergenic 90.0%
! GGCATCCGGGGGGGGGGGGG+GGG + Chr1:44194670-44194689 None:intergenic 90.0%
! GGGGGGGGGGGGGGGGGGGA+AGG + Chr1:44194656-44194675 None:intergenic 95.0%
! TCCGGGGGGGGGGGGGGGGG+GGG + Chr1:44194666-44194685 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
Chr1 gene 44192432 44197892 44192432 ID=MsG0180002738.01;Name=MsG0180002738.01
Chr1 mRNA 44192432 44197892 44192432 ID=MsG0180002738.01.T01;Parent=MsG0180002738.01;Name=MsG0180002738.01.T01;_AED=0.47;_eAED=0.47;_QI=56|0.66|0.71|0.85|1|1|7|0|463
Chr1 exon 44192432 44192633 44192432 ID=MsG0180002738.01.T01:exon:38344;Parent=MsG0180002738.01.T01
Chr1 exon 44194532 44194669 44194532 ID=MsG0180002738.01.T01:exon:38343;Parent=MsG0180002738.01.T01
Chr1 exon 44194951 44195093 44194951 ID=MsG0180002738.01.T01:exon:38342;Parent=MsG0180002738.01.T01
Chr1 exon 44195250 44195469 44195250 ID=MsG0180002738.01.T01:exon:38341;Parent=MsG0180002738.01.T01
Chr1 exon 44195695 44195792 44195695 ID=MsG0180002738.01.T01:exon:38340;Parent=MsG0180002738.01.T01
Chr1 exon 44195916 44196143 44195916 ID=MsG0180002738.01.T01:exon:38339;Parent=MsG0180002738.01.T01
Chr1 exon 44197474 44197892 44197474 ID=MsG0180002738.01.T01:exon:38338;Parent=MsG0180002738.01.T01
Chr1 five_prime_UTR 44197837 44197892 44197837 ID=MsG0180002738.01.T01:five_prime_utr;Parent=MsG0180002738.01.T01
Chr1 CDS 44197474 44197836 44197474 ID=MsG0180002738.01.T01:cds;Parent=MsG0180002738.01.T01
Chr1 CDS 44195916 44196143 44195916 ID=MsG0180002738.01.T01:cds;Parent=MsG0180002738.01.T01
Chr1 CDS 44195695 44195792 44195695 ID=MsG0180002738.01.T01:cds;Parent=MsG0180002738.01.T01
Chr1 CDS 44195250 44195469 44195250 ID=MsG0180002738.01.T01:cds;Parent=MsG0180002738.01.T01
Chr1 CDS 44194951 44195093 44194951 ID=MsG0180002738.01.T01:cds;Parent=MsG0180002738.01.T01
Chr1 CDS 44194532 44194669 44194532 ID=MsG0180002738.01.T01:cds;Parent=MsG0180002738.01.T01
Chr1 CDS 44192432 44192633 44192432 ID=MsG0180002738.01.T01:cds;Parent=MsG0180002738.01.T01
Gene Sequence

>MsG0180002738.01.T01

ATGGCGGAATACGATCTAACACCGCGAATGGCACCAAACCTCGACCGTCATCTCGTCTTTCCACTCTTAGAGTTTCTTCAAGAGCGGCAGTTATACGACGATAACCACATCCTTAAGGCTAAGATCGATCTATTAAACAACACAAACATGGTTGATTACGCCATGGACATTCACAAGACTCTTTATCAAACTGAAGATGTTCCTCAGGATATGGTTGAACGTAGGGCTGACGTTGTTGCTAGACTTAAGTCTCTTGAAGATGCTGCTGCACCTCTTGTGGCGTTTCTTCAGAATCCTGCTGCTGTTCAGGAATTGAGAGCTGATAAACATTACAATCTTCAGATGCTTAATGACAAATATCAGATTGGTCCTGCACAGATAGAGGCATTATACCAATATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGACTATCTTTACCAGTACAGAGCATTATGCACGAACAGCGAAAGGAGTTTGAATGCATTATGGGGAAAGCTGGCCGCTGAAGTATTGATGCAAAACTGGGATATTGCTCTGGAAGAGCTCAATCGCTTGAAGGAAATAATTGACTCAAAGGTGCAAAGCAGAATATGGTTGATGCATTGGAGTCTGTTCATCTTTTTCAACCATGACAATGGAAGAACACAGATAATTGATCTGTTTAACCAGGACAAGTATCTTAATGCTATCCAAACCAGTGCTCCACACCTTTTGCGATACTTGGCCACAGCATTTATTGTCAACAAGCGCAGGAGGCCTCAATTCAAAGATTTTATAAAAGTTATTCAACAAGAGCAGAATTCATATAAGGACCCCATTACTGAGTTTCTGGCTTGTGTTTATGTCAACTATGACTTTGATGGCGCACAAAAGAAGATGAGGGAGTGTGAAGAAGTAATTCTCAATGATCCCTTCCTTGGTAAACGAGTTGAAGAAAGCAACTTCTCAACTGTACCATTAAGGGACGAGTTCCTTGAAAATGCTAGGCTGTTTATTTTTGAGACCTACTGCAGGATACATCAACGAATTGACATGGGTGTACTTGCTGAGAAGCTAAATTTGAATTACGAGGAGGCTGAGAGATGGATTGTGAATCTCATCCGTGGCTCAAAGCTTGATGCCAAAATTGACTCTGAAACTGGAACCGTTATCATGGAACCCAACCATCCAAATGTGAATACAAGCAAAGACGAGCATTCACATATTCAAGGAGACAAGGTATTGGAGTCGGACTCGGATCTTGTTCCTAGAATGTTAAATGAGGAAAATTACTCTCCAGCAGAGATCATTGATTATCCTGATCCAGATTTCAATAACTTTGAGAAGGACACAGCAGATGATTGTTTTACTGTTAATCAATCATGGGCAACTTTTTAA

Protein sequence

>MsG0180002738.01.T01

MAEYDLTPRMAPNLDRHLVFPLLEFLQERQLYDDNHILKAKIDLLNNTNMVDYAMDIHKTLYQTEDVPQDMVERRADVVARLKSLEDAAAPLVAFLQNPAAVQELRADKHYNLQMLNDKYQIGPAQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLNALWGKLAAEVLMQNWDIALEELNRLKEIIDSKVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMRECEEVILNDPFLGKRVEESNFSTVPLRDEFLENARLFIFETYCRIHQRIDMGVLAEKLNLNYEEAERWIVNLIRGSKLDAKIDSETGTVIMEPNHPNVNTSKDEHSHIQGDKVLESDSDLVPRMLNEENYSPAEIIDYPDPDFNNFEKDTADDCFTVNQSWATF*