AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004503.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004503.01.T01 MTR_1g022165 94.203 207 11 1 1 206 1 207 5.08e-140 389
MsG0180004503.01.T01 MTR_7g111590 91.787 207 16 1 1 206 1 207 1.16e-137 384
MsG0180004503.01.T01 MTR_5g026750 91.304 207 17 1 1 206 1 207 5.75e-137 382
MsG0180004503.01.T01 MTR_7g111590 91.304 207 15 2 1 206 1 205 9.48e-135 376
MsG0180004503.01.T01 MTR_8g071810 65.432 81 28 0 103 183 67 147 7.08e-28 103
MsG0180004503.01.T03 MTR_1g022165 94.203 207 11 1 1 206 1 207 5.08e-140 389
MsG0180004503.01.T03 MTR_7g111590 91.787 207 16 1 1 206 1 207 1.16e-137 384
MsG0180004503.01.T03 MTR_5g026750 91.304 207 17 1 1 206 1 207 5.75e-137 382
MsG0180004503.01.T03 MTR_7g111590 91.304 207 15 2 1 206 1 205 9.48e-135 376
MsG0180004503.01.T03 MTR_8g071810 65.432 81 28 0 103 183 67 147 7.08e-28 103
MsG0180004503.01.T02 MTR_1g022165 94.203 207 11 1 1 206 1 207 5.08e-140 389
MsG0180004503.01.T02 MTR_7g111590 91.787 207 16 1 1 206 1 207 1.16e-137 384
MsG0180004503.01.T02 MTR_5g026750 91.304 207 17 1 1 206 1 207 5.75e-137 382
MsG0180004503.01.T02 MTR_7g111590 91.304 207 15 2 1 206 1 205 9.48e-135 376
MsG0180004503.01.T02 MTR_8g071810 65.432 81 28 0 103 183 67 147 7.08e-28 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004503.01.T01 AT3G49010 82.199 191 33 1 2 191 1 191 1.41e-114 325
MsG0180004503.01.T01 AT3G49010 82.199 191 33 1 2 191 1 191 1.41e-114 325
MsG0180004503.01.T01 AT3G49010 82.199 191 33 1 2 191 1 191 1.41e-114 325
MsG0180004503.01.T01 AT3G49010 82.199 191 33 1 2 191 1 191 1.41e-114 325
MsG0180004503.01.T01 AT3G49010 82.199 191 33 1 2 191 1 191 1.41e-114 325
MsG0180004503.01.T01 AT3G49010 81.675 191 32 2 2 191 1 189 6.52e-112 318
MsG0180004503.01.T01 AT5G23900 79.032 186 38 1 2 186 1 186 3.08e-106 304
MsG0180004503.01.T01 AT3G48960 71.354 192 54 1 2 192 1 192 4.22e-96 278
MsG0180004503.01.T01 AT3G49010 60.000 190 24 2 2 191 1 138 1.26e-71 214
MsG0180004503.01.T03 AT3G49010 82.199 191 33 1 2 191 1 191 1.41e-114 325
MsG0180004503.01.T03 AT3G49010 82.199 191 33 1 2 191 1 191 1.41e-114 325
MsG0180004503.01.T03 AT3G49010 82.199 191 33 1 2 191 1 191 1.41e-114 325
MsG0180004503.01.T03 AT3G49010 82.199 191 33 1 2 191 1 191 1.41e-114 325
MsG0180004503.01.T03 AT3G49010 82.199 191 33 1 2 191 1 191 1.41e-114 325
MsG0180004503.01.T03 AT3G49010 81.675 191 32 2 2 191 1 189 6.52e-112 318
MsG0180004503.01.T03 AT5G23900 79.032 186 38 1 2 186 1 186 3.08e-106 304
MsG0180004503.01.T03 AT3G48960 71.354 192 54 1 2 192 1 192 4.22e-96 278
MsG0180004503.01.T03 AT3G49010 60.000 190 24 2 2 191 1 138 1.26e-71 214
MsG0180004503.01.T02 AT3G49010 82.199 191 33 1 2 191 1 191 1.41e-114 325
MsG0180004503.01.T02 AT3G49010 82.199 191 33 1 2 191 1 191 1.41e-114 325
MsG0180004503.01.T02 AT3G49010 82.199 191 33 1 2 191 1 191 1.41e-114 325
MsG0180004503.01.T02 AT3G49010 82.199 191 33 1 2 191 1 191 1.41e-114 325
MsG0180004503.01.T02 AT3G49010 82.199 191 33 1 2 191 1 191 1.41e-114 325
MsG0180004503.01.T02 AT3G49010 81.675 191 32 2 2 191 1 189 6.52e-112 318
MsG0180004503.01.T02 AT5G23900 79.032 186 38 1 2 186 1 186 3.08e-106 304
MsG0180004503.01.T02 AT3G48960 71.354 192 54 1 2 192 1 192 4.22e-96 278
MsG0180004503.01.T02 AT3G49010 60.000 190 24 2 2 191 1 138 1.26e-71 214

Find 27 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAGATCAGTTCAATATTT+AGG 0.119163 1:+78943252 MsG0180004503.01.T01:intron
CCAGATCAGTTCAATATTTA+GGG 0.199497 1:+78943253 MsG0180004503.01.T01:intron
CAAGTGAAGGAATGGCAATT+AGG 0.307836 1:-78943197 None:intergenic
TGCTTACGGAAGTGTTCATT+TGG 0.319315 1:-78943360 None:intergenic
CTGGTGAAAACGGCGGTACC+TGG 0.379254 1:-78943234 None:intergenic
CGTCTCCTGGTCTTCCTAGC+TGG 0.389013 1:-78943417 None:intergenic
CATAGTTCTGCCAATGCTTA+CGG 0.420637 1:-78943374 None:intergenic
CCCTAAATATTGAACTGATC+TGG 0.428495 1:-78943253 None:intergenic
GCTTACGGAAGTGTTCATTT+GGG 0.453054 1:-78943359 None:intergenic
TAGGAAGACCAGGAGACGCT+TGG 0.484150 1:+78943422 MsG0180004503.01.T01:CDS
TTGAACTGATCTGGTGAAAA+CGG 0.489010 1:-78943244 None:intergenic
GGTACCTGGGAGAGAGGTGG+CGG 0.493912 1:-78943220 None:intergenic
AGGAAGACCAGGAGACGCTT+GGG 0.497890 1:+78943423 MsG0180004503.01.T01:CDS
GTAATTACCCAAGCGTCTCC+TGG 0.500114 1:-78943430 None:intergenic
ACTATTCTTCGCTGATTCAA+AGG 0.517681 1:+78943288 MsG0180004503.01.T01:intron
ATCAACCAGCTAGGAAGACC+AGG 0.552070 1:+78943412 MsG0180004503.01.T01:CDS
TGGTGAAAACGGCGGTACCT+GGG 0.556183 1:-78943233 None:intergenic
CTTGCCGCCACCTCTCTCCC+AGG 0.559256 1:+78943216 MsG0180004503.01.T01:five_prime_UTR
AGAGAGGTGGCGGCAAGTGA+AGG 0.560745 1:-78943210 None:intergenic
ATGAACACTTCCGTAAGCAT+TGG 0.574424 1:+78943364 MsG0180004503.01.T01:CDS
GGTGGCGGCAAGTGAAGGAA+TGG 0.579827 1:-78943205 None:intergenic
CATGGTTCAATCAACCAGCT+AGG 0.591929 1:+78943403 MsG0180004503.01.T01:CDS
AACGGCGGTACCTGGGAGAG+AGG 0.594400 1:-78943226 None:intergenic
AACATTGTTGTGCTTCACCA+TGG 0.595442 1:-78943334 None:intergenic
GGCGGTACCTGGGAGAGAGG+TGG 0.603024 1:-78943223 None:intergenic
GGCAGAACTATGTCAAAACA+TGG 0.632555 1:+78943385 MsG0180004503.01.T01:CDS
AACTGATCTGGTGAAAACGG+CGG 0.697545 1:-78943241 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTAAGTTGTAAAAATAT+AGG - Chr1:78943455-78943474 None:intergenic 10.0%
!! AAGTTATAATATGTAGTTTA+TGG - Chr1:78944800-78944819 None:intergenic 15.0%
!! ATAAACTAAAATCATCATTG+AGG - Chr1:78945025-78945044 None:intergenic 20.0%
!! ATATGATTGGATTATAAACT+CGG - Chr1:78945382-78945401 None:intergenic 20.0%
!! ATATGTTACTCTTAAATGAT+TGG - Chr1:78944364-78944383 None:intergenic 20.0%
!! TAACATATAGTTCTTGTAAT+GGG + Chr1:78944376-78944395 MsG0180004503.01.T01:intron 20.0%
!! TGTTCATAAGAAAACTAATT+TGG - Chr1:78945428-78945447 None:intergenic 20.0%
!!! AATTATTTTTATTTGTCTGC+AGG + Chr1:78945121-78945140 MsG0180004503.01.T01:intron 20.0%
!!! TAATAATGGGTTTATACATA+TGG + Chr1:78944640-78944659 MsG0180004503.01.T01:intron 20.0%
!!! TTGAAATAGGAAGTATTAAT+CGG + Chr1:78945087-78945106 MsG0180004503.01.T01:intron 20.0%
! ACAGAATAATAGTAAAGCAA+AGG - Chr1:78945474-78945493 None:intergenic 25.0%
! ATATTAGATAGAACTAATGC+AGG - Chr1:78944113-78944132 None:intergenic 25.0%
! ATCTAATATAATCATTGTCG+TGG + Chr1:78944124-78944143 MsG0180004503.01.T01:intron 25.0%
! GTAACATATAGTTCTTGTAA+TGG + Chr1:78944375-78944394 MsG0180004503.01.T01:intron 25.0%
! TACAGAATTGAAGACTATAT+AGG - Chr1:78944309-78944328 None:intergenic 25.0%
! TATTAGATAGAACTAATGCA+GGG - Chr1:78944112-78944131 None:intergenic 25.0%
!! CATATGACTAATTGATTTCT+GGG + Chr1:78944208-78944227 MsG0180004503.01.T01:intron 25.0%
!! CCTACAGTTTAATCTATTTT+CGG - Chr1:78944273-78944292 None:intergenic 25.0%
!! CTACAGTTTAATCTATTTTC+GGG - Chr1:78944272-78944291 None:intergenic 25.0%
!! TAATGATCGGTTTATACATA+TGG + Chr1:78944587-78944606 MsG0180004503.01.T01:intron 25.0%
!! TCATATGACTAATTGATTTC+TGG + Chr1:78944207-78944226 MsG0180004503.01.T01:intron 25.0%
!! TTTTACGCTAAAGACTAAAT+TGG + Chr1:78944064-78944083 MsG0180004503.01.T01:intron 25.0%
!!! AAGGCTTGTTTTTGATTTTT+AGG + Chr1:78943307-78943326 MsG0180004503.01.T01:intron 25.0%
AATAGCCATATGCAAAAACT+TGG - Chr1:78944673-78944692 None:intergenic 30.0%
ACCAGATCAGTTCAATATTT+AGG + Chr1:78943252-78943271 MsG0180004503.01.T01:intron 30.0%
CAAACAAACAATTTAAGCCA+CGG - Chr1:78943619-78943638 None:intergenic 30.0%
CAAACATGTCAAAAAACATG+AGG - Chr1:78943528-78943547 None:intergenic 30.0%
CCAGATCAGTTCAATATTTA+GGG + Chr1:78943253-78943272 MsG0180004503.01.T01:intron 30.0%
CCGAAAATAGATTAAACTGT+AGG + Chr1:78944270-78944289 MsG0180004503.01.T01:intron 30.0%
CCTGTCATAAAAACAAAAGT+AGG - Chr1:78944832-78944851 None:intergenic 30.0%
GCATATGACACTTAAATGAT+GGG + Chr1:78944453-78944472 MsG0180004503.01.T01:intron 30.0%
TAAGGTTACAGATGAAATGA+AGG + Chr1:78945238-78945257 MsG0180004503.01.T01:CDS 30.0%
TACTCTCAAGTTACTAAACA+TGG - Chr1:78944340-78944359 None:intergenic 30.0%
TAGTTGAAGACTATAAAGTC+TGG - Chr1:78944772-78944791 None:intergenic 30.0%
TCATGAAACAGCTATATGAT+TGG - Chr1:78945395-78945414 None:intergenic 30.0%
TGCATATGACACTTAAATGA+TGG + Chr1:78944452-78944471 MsG0180004503.01.T01:intron 30.0%
TTGAGGTTCTTATATTACCT+TGG - Chr1:78945008-78945027 None:intergenic 30.0%
! ATGGCTCTACACTTTAATAA+TGG + Chr1:78944626-78944645 MsG0180004503.01.T01:intron 30.0%
! ATTTTCTCTTGAAGAGTTGA+AGG + Chr1:78943928-78943947 MsG0180004503.01.T01:intron 30.0%
! CTAGAGTTCAACTTTTATTC+AGG - Chr1:78944742-78944761 None:intergenic 30.0%
! TGGCTCTACACTTTAATAAT+GGG + Chr1:78944627-78944646 MsG0180004503.01.T01:intron 30.0%
!! AAACGATGGGTTTTTACATA+TGG + Chr1:78944521-78944540 MsG0180004503.01.T01:intron 30.0%
!! AAATGATGGGTTTATACACA+TGG + Chr1:78944466-78944485 MsG0180004503.01.T01:intron 30.0%
!! CTGTGTAGATGTTACTTTAT+GGG + Chr1:78943989-78944008 MsG0180004503.01.T01:intron 30.0%
!! TCTGTGTAGATGTTACTTTA+TGG + Chr1:78943988-78944007 MsG0180004503.01.T01:intron 30.0%
!! TGGATGATGGTTTTTACATA+TGG + Chr1:78944607-78944626 MsG0180004503.01.T01:intron 30.0%
!!! CCTACTTTTGTTTTTATGAC+AGG + Chr1:78944829-78944848 MsG0180004503.01.T01:intron 30.0%
!!! CTCATGTTTTTTGACATGTT+TGG + Chr1:78943526-78943545 MsG0180004503.01.T01:intron 30.0%
!!! GATGATGGGTTTTTTACATA+TGG + Chr1:78944488-78944507 MsG0180004503.01.T01:intron 30.0%
!!! TTTGATTTTTAGGTAAGCCA+TGG + Chr1:78943317-78943336 MsG0180004503.01.T01:intron 30.0%
AAAACCCATCGTTTAAGTGT+CGG - Chr1:78944515-78944534 None:intergenic 35.0%
AAACTGTAGGAAAGATCGTA+CGG + Chr1:78944283-78944302 MsG0180004503.01.T01:intron 35.0%
ACATGCCAAGTCTTAAATCA+TGG + Chr1:78945445-78945464 MsG0180004503.01.T01:three_prime_UTR 35.0%
ACCTTAACAAGTTCAACAGT+TGG - Chr1:78945224-78945243 None:intergenic 35.0%
CAATGATGGTATCAAAGCTA+AGG - Chr1:78945058-78945077 None:intergenic 35.0%
CCCTAAATATTGAACTGATC+TGG - Chr1:78943256-78943275 None:intergenic 35.0%
CGGTTTATACATATGGATGA+TGG + Chr1:78944594-78944613 MsG0180004503.01.T01:intron 35.0%
CTTCAAGAGAAAATCCTTTC+CGG - Chr1:78943922-78943941 None:intergenic 35.0%
GGTTTATACACATGGATGAT+GGG + Chr1:78944474-78944493 MsG0180004503.01.T01:intron 35.0%
TCTGCAGTGTCTTGAATTAT+AGG + Chr1:78943679-78943698 MsG0180004503.01.T01:intron 35.0%
TGGCTAGACACTTTAATGAT+CGG + Chr1:78944574-78944593 MsG0180004503.01.T01:intron 35.0%
TTATAAACTCGGACTTCTCA+AGG - Chr1:78945371-78945390 None:intergenic 35.0%
TTGAACTGATCTGGTGAAAA+CGG - Chr1:78943247-78943266 None:intergenic 35.0%
TTGAAGACTATAAAGTCTGG+AGG - Chr1:78944769-78944788 None:intergenic 35.0%
! AAATCTTCACTGCCTTCTTT+TGG - Chr1:78943824-78943843 None:intergenic 35.0%
! GGAATCCATGATTTAAGACT+TGG - Chr1:78945453-78945472 None:intergenic 35.0%
! GTACTGTCACTTAAGTTTGT+TGG + Chr1:78945494-78945513 MsG0180004503.01.T01:three_prime_UTR 35.0%
! TGACACCAAGTTTTTGCATA+TGG + Chr1:78944665-78944684 MsG0180004503.01.T01:intron 35.0%
!! ACTATTCTTCGCTGATTCAA+AGG + Chr1:78943288-78943307 MsG0180004503.01.T01:intron 35.0%
!! AGCTTGTTGAACTTTAACTG+TGG + Chr1:78943957-78943976 MsG0180004503.01.T01:intron 35.0%
!! ATTTTTATTTGTCTGCAGGC+TGG + Chr1:78945125-78945144 MsG0180004503.01.T01:intron 35.0%
!! TTTTTATTTGTCTGCAGGCT+GGG + Chr1:78945126-78945145 MsG0180004503.01.T01:intron 35.0%
!!! TTTTTTGACATGTTTGTCCG+TGG + Chr1:78943599-78943618 MsG0180004503.01.T01:intron 35.0%
AAACCCATCGTTTAAGTGTC+GGG - Chr1:78944547-78944566 None:intergenic 40.0%
AACATTGTTGTGCTTCACCA+TGG - Chr1:78943337-78943356 None:intergenic 40.0%
ATGAACACTTCCGTAAGCAT+TGG + Chr1:78943364-78943383 MsG0180004503.01.T01:CDS 40.0%
ATGGCTCAACACTTAAACGA+TGG + Chr1:78944507-78944526 MsG0180004503.01.T01:intron 40.0%
ATGGGCTTGTAGATTTGTGT+TGG + Chr1:78944007-78944026 MsG0180004503.01.T01:CDS 40.0%
ATGGTCAACAGAAATGCCAA+TGG - Chr1:78944885-78944904 None:intergenic 40.0%
ATTGCTGCTAGGGTTGAAAT+AGG + Chr1:78945074-78945093 MsG0180004503.01.T01:intron 40.0%
GAAAACATACAAGGCCAAGT+TGG + Chr1:78944955-78944974 MsG0180004503.01.T01:CDS 40.0%
GGCAGAACTATGTCAAAACA+TGG + Chr1:78943385-78943404 MsG0180004503.01.T01:CDS 40.0%
GGGTTTATACACATGGATGA+TGG + Chr1:78944473-78944492 MsG0180004503.01.T01:intron 40.0%
TACAACATGAAACTTCGTGC+CGG + Chr1:78943900-78943919 MsG0180004503.01.T01:intron 40.0%
TCAACAGAAATGCCAATGGT+TGG - Chr1:78944881-78944900 None:intergenic 40.0%
TGATACCATCATTGCTGCTA+GGG + Chr1:78945064-78945083 MsG0180004503.01.T01:intron 40.0%
TGGCTCAACACTTAAACGAT+GGG + Chr1:78944508-78944527 MsG0180004503.01.T01:intron 40.0%
TTGATACCATCATTGCTGCT+AGG + Chr1:78945063-78945082 MsG0180004503.01.T01:intron 40.0%
! ATCATACTTGCCGATTGTGA+GGG + Chr1:78945193-78945212 MsG0180004503.01.T01:CDS 40.0%
! CATAGTTCTGCCAATGCTTA+CGG - Chr1:78943377-78943396 None:intergenic 40.0%
!! GCAGGGATGCTTATTTTCAT+AGG - Chr1:78944095-78944114 None:intergenic 40.0%
!! GCCAACTGTTGAACTTGTTA+AGG + Chr1:78945220-78945239 MsG0180004503.01.T01:CDS 40.0%
!! GCTTACGGAAGTGTTCATTT+GGG - Chr1:78943362-78943381 None:intergenic 40.0%
!! TGCTTACGGAAGTGTTCATT+TGG - Chr1:78943363-78943382 None:intergenic 40.0%
!! TTTTATTTGTCTGCAGGCTG+GGG + Chr1:78945127-78945146 MsG0180004503.01.T01:intron 40.0%
!!! TTGTTTTTATGACAGGCTGC+CGG + Chr1:78944836-78944855 MsG0180004503.01.T01:intron 40.0%
AACTGATCTGGTGAAAACGG+CGG - Chr1:78943244-78943263 None:intergenic 45.0%
AATGGTTGGAGCAAGCTTCT+TGG - Chr1:78944867-78944886 None:intergenic 45.0%
ATGACCCGACACTTAAACGA+TGG + Chr1:78944540-78944559 MsG0180004503.01.T01:intron 45.0%
ATGGTTGGAGCAAGCTTCTT+GGG - Chr1:78944866-78944885 None:intergenic 45.0%
CAATCGGCAAGTATGATCCT+TGG - Chr1:78945190-78945209 None:intergenic 45.0%
CATGGTTCAATCAACCAGCT+AGG + Chr1:78943403-78943422 MsG0180004503.01.T01:CDS 45.0%
CCTTGGGAAAACAACCAACT+TGG - Chr1:78944972-78944991 None:intergenic 45.0%
GCAGAGGCTGAAAACATACA+AGG + Chr1:78944946-78944965 MsG0180004503.01.T01:CDS 45.0%
GCAGTTTGACCGTGAACAAT+TGG - Chr1:78943876-78943895 None:intergenic 45.0%
GGGCTACAAAAATCACAGCA+CGG - Chr1:78943800-78943819 None:intergenic 45.0%
GTATGATCCTTGGACTTGTG+TGG - Chr1:78945180-78945199 None:intergenic 45.0%
TGACCCGACACTTAAACGAT+GGG + Chr1:78944541-78944560 MsG0180004503.01.T01:intron 45.0%
TTCAACCCTAGCAGCAATGA+TGG - Chr1:78945072-78945091 None:intergenic 45.0%
! AAGAAGCTTGCTCCAACCAT+TGG + Chr1:78944866-78944885 MsG0180004503.01.T01:CDS 45.0%
! GATCATACTTGCCGATTGTG+AGG + Chr1:78945192-78945211 MsG0180004503.01.T01:CDS 45.0%
! TCTTCACTGCCTTCTTTTGG+CGG - Chr1:78943821-78943840 None:intergenic 45.0%
! TTTTGTAGCCCGCCAAAAGA+AGG + Chr1:78943809-78943828 MsG0180004503.01.T01:intron 45.0%
!! CCTTTGAGGCCAATTGTTCA+CGG + Chr1:78943864-78943883 MsG0180004503.01.T01:CDS 45.0%
!!! CCAAGTTGGTTGTTTTCCCA+AGG + Chr1:78944969-78944988 MsG0180004503.01.T01:CDS 45.0%
ACAAGCGTCATTTGGGTGCT+AGG + Chr1:78945300-78945319 MsG0180004503.01.T01:CDS 50.0%
AGCAAGCTTCTTGGGGATAC+CGG - Chr1:78944858-78944877 None:intergenic 50.0%
AGCACCCAAATGACGCTTGT+TGG - Chr1:78945300-78945319 None:intergenic 50.0%
ATCAACCAGCTAGGAAGACC+AGG + Chr1:78943412-78943431 MsG0180004503.01.T01:CDS 50.0%
ATTTGGGTGCTAGGCTCAAG+AGG + Chr1:78945309-78945328 MsG0180004503.01.T01:CDS 50.0%
CATGAAACTTCGTGCCGGAA+AGG + Chr1:78943905-78943924 MsG0180004503.01.T01:intron 50.0%
CCTCCAAAGAACGGTTCTTG+CGG - Chr1:78944910-78944929 None:intergenic 50.0%
CGCAAGAACCGTTCTTTGGA+GGG + Chr1:78944908-78944927 MsG0180004503.01.T01:CDS 50.0%
CGCACCAACAAGCGTCATTT+GGG + Chr1:78945293-78945312 MsG0180004503.01.T01:CDS 50.0%
CTTGCAGACCCTCCAAAGAA+CGG - Chr1:78944919-78944938 None:intergenic 50.0%
GCTAATGCCACACAAGTCCA+AGG + Chr1:78945170-78945189 MsG0180004503.01.T01:CDS 50.0%
GTAATTACCCAAGCGTCTCC+TGG - Chr1:78943433-78943452 None:intergenic 50.0%
GTCTGCAAGCTAATGTGCAG+AGG + Chr1:78944930-78944949 MsG0180004503.01.T01:CDS 50.0%
GTGGCATTAGCAAGTTCCTC+AGG - Chr1:78945161-78945180 None:intergenic 50.0%
TGGTTGGAGCAAGCTTCTTG+GGG - Chr1:78944865-78944884 None:intergenic 50.0%
TTTGGGTGCTAGGCTCAAGA+GGG + Chr1:78945310-78945329 MsG0180004503.01.T01:CDS 50.0%
! AATTGGCCTCAAAGGTCCAG+CGG - Chr1:78943859-78943878 None:intergenic 50.0%
! AGGCAGTGAAGATTTTCCCC+CGG + Chr1:78943829-78943848 MsG0180004503.01.T01:CDS 50.0%
! CCGTGAACAATTGGCCTCAA+AGG - Chr1:78943867-78943886 None:intergenic 50.0%
! CTTCACTGCCTTCTTTTGGC+GGG - Chr1:78943820-78943839 None:intergenic 50.0%
! GTTGGCTTCTCCCTCACAAT+CGG - Chr1:78945206-78945225 None:intergenic 50.0%
AAGAACGGTTCTTGCGGCGA+TGG - Chr1:78944904-78944923 None:intergenic 55.0%
AGGAAGACCAGGAGACGCTT+GGG + Chr1:78943423-78943442 MsG0180004503.01.T01:CDS 55.0%
CCGCAAGAACCGTTCTTTGG+AGG + Chr1:78944907-78944926 MsG0180004503.01.T01:CDS 55.0%
GCGCACCAACAAGCGTCATT+TGG + Chr1:78945292-78945311 MsG0180004503.01.T01:CDS 55.0%
TAGGAAGACCAGGAGACGCT+TGG + Chr1:78943422-78943441 MsG0180004503.01.T01:CDS 55.0%
TCGCCGCAAGAACCGTTCTT+TGG + Chr1:78944904-78944923 MsG0180004503.01.T01:CDS 55.0%
TGGTGAAAACGGCGGTACCT+GGG - Chr1:78943236-78943255 None:intergenic 55.0%
CTGGTGAAAACGGCGGTACC+TGG - Chr1:78943237-78943256 None:intergenic 60.0%
GAGGGCTGCTGAGGCAGAAA+AGG + Chr1:78945328-78945347 MsG0180004503.01.T01:CDS 60.0%
TAGGCTCAAGAGGGCTGCTG+AGG + Chr1:78945319-78945338 MsG0180004503.01.T01:CDS 60.0%
TCAAAGGTCCAGCGGTTGGC+CGG - Chr1:78943851-78943870 None:intergenic 60.0%
! AGAGAGGTGGCGGCAAGTGA+AGG - Chr1:78943213-78943232 None:intergenic 60.0%
! CGTCTCCTGGTCTTCCTAGC+TGG - Chr1:78943420-78943439 None:intergenic 60.0%
! GACGCTTGTTGGTGCGCTCA+AGG - Chr1:78945289-78945308 None:intergenic 60.0%
! GGTGGCGGCAAGTGAAGGAA+TGG - Chr1:78943208-78943227 None:intergenic 60.0%
AACGGCGGTACCTGGGAGAG+AGG - Chr1:78943229-78943248 None:intergenic 65.0%
AAGGCGCGCACGCAAGACCA+AGG + Chr1:78944988-78945007 MsG0180004503.01.T01:CDS 65.0%
GGCCAACCGCTGGACCTTTG+AGG + Chr1:78943850-78943869 MsG0180004503.01.T01:CDS 65.0%
GGCCTCAAAGGTCCAGCGGT+TGG - Chr1:78943855-78943874 None:intergenic 65.0%
GGCTGGGGACTCTACACCTG+AGG + Chr1:78945142-78945161 MsG0180004503.01.T01:intron 65.0%
GGTACCTGGGAGAGAGGTGG+CGG - Chr1:78943223-78943242 None:intergenic 65.0%
! AAAGGTCCAGCGGTTGGCCG+GGG - Chr1:78943849-78943868 None:intergenic 65.0%
! ATTTTCCCCCGGCCAACCGC+TGG + Chr1:78943840-78943859 MsG0180004503.01.T01:CDS 65.0%
! CAAAGGTCCAGCGGTTGGCC+GGG - Chr1:78943850-78943869 None:intergenic 65.0%
! TGGTCTTGCGTGCGCGCCTT+GGG - Chr1:78944988-78945007 None:intergenic 65.0%
!! TTGGTCTTGCGTGCGCGCCT+TGG - Chr1:78944989-78945008 None:intergenic 65.0%
CTTGCCGCCACCTCTCTCCC+AGG + Chr1:78943216-78943235 MsG0180004503.01.T01:five_prime_UTR 70.0%
GGCGGTACCTGGGAGAGAGG+TGG - Chr1:78943226-78943245 None:intergenic 70.0%
! AAGGTCCAGCGGTTGGCCGG+GGG - Chr1:78943848-78943867 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 78943200 78945555 78943200 ID=MsG0180004503.01;Name=MsG0180004503.01
Chr1 mRNA 78943200 78945555 78943200 ID=MsG0180004503.01.T01;Parent=MsG0180004503.01;Name=MsG0180004503.01.T01;_AED=0.38;_eAED=0.40;_QI=64|0.6|0.66|1|0.8|0.66|6|191|206
Chr1 exon 78943200 78943256 78943200 ID=MsG0180004503.01.T01:exon:13033;Parent=MsG0180004503.01.T01
Chr1 five_prime_UTR 78943200 78943256 78943200 ID=MsG0180004503.01.T01:five_prime_utr;Parent=MsG0180004503.01.T01
Chr1 five_prime_UTR 78943329 78943335 78943329 ID=MsG0180004503.01.T01:five_prime_utr;Parent=MsG0180004503.01.T01
Chr1 CDS 78943336 78943444 78943336 ID=MsG0180004503.01.T01:cds;Parent=MsG0180004503.01.T01
Chr1 CDS 78943817 78943915 78943817 ID=MsG0180004503.01.T01:cds;Parent=MsG0180004503.01.T01
Chr1 CDS 78943997 78944028 78943997 ID=MsG0180004503.01.T01:cds;Parent=MsG0180004503.01.T01
Chr1 CDS 78944851 78945009 78944851 ID=MsG0180004503.01.T01:cds;Parent=MsG0180004503.01.T01
Chr1 CDS 78945143 78945364 78945143 ID=MsG0180004503.01.T01:cds;Parent=MsG0180004503.01.T01
Chr1 three_prime_UTR 78945365 78945555 78945365 ID=MsG0180004503.01.T01:three_prime_utr;Parent=MsG0180004503.01.T01
Chr1 mRNA 78943210 78945555 78943210 ID=MsG0180004503.01.T02;Parent=MsG0180004503.01;Name=MsG0180004503.01.T02;_AED=0.38;_eAED=0.40;_QI=35|0.6|0.66|1|0.8|0.66|6|191|206
Chr1 exon 78943210 78943237 78943210 ID=MsG0180004503.01.T02:exon:13039;Parent=MsG0180004503.01.T02
Chr1 five_prime_UTR 78943210 78943237 78943210 ID=MsG0180004503.01.T02:five_prime_utr;Parent=MsG0180004503.01.T02
Chr1 five_prime_UTR 78943329 78943335 78943329 ID=MsG0180004503.01.T02:five_prime_utr;Parent=MsG0180004503.01.T02
Chr1 CDS 78943336 78943444 78943336 ID=MsG0180004503.01.T02:cds;Parent=MsG0180004503.01.T02
Chr1 CDS 78943817 78943915 78943817 ID=MsG0180004503.01.T02:cds;Parent=MsG0180004503.01.T02
Chr1 CDS 78943997 78944028 78943997 ID=MsG0180004503.01.T02:cds;Parent=MsG0180004503.01.T02
Chr1 CDS 78944851 78945009 78944851 ID=MsG0180004503.01.T02:cds;Parent=MsG0180004503.01.T02
Chr1 CDS 78945143 78945364 78945143 ID=MsG0180004503.01.T02:cds;Parent=MsG0180004503.01.T02
Chr1 three_prime_UTR 78945365 78945555 78945365 ID=MsG0180004503.01.T02:three_prime_utr;Parent=MsG0180004503.01.T02
Chr1 mRNA 78943245 78945555 78943245 ID=MsG0180004503.01.T03;Parent=MsG0180004503.01;Name=MsG0180004503.01.T03;_AED=0.37;_eAED=0.40;_QI=91|0.5|0.6|1|1|1|5|191|206
Chr1 exon 78943245 78943444 78943245 ID=MsG0180004503.01.T03:exon:13040;Parent=MsG0180004503.01.T03
Chr1 five_prime_UTR 78943245 78943335 78943245 ID=MsG0180004503.01.T03:five_prime_utr;Parent=MsG0180004503.01.T03
Chr1 CDS 78943336 78943444 78943336 ID=MsG0180004503.01.T03:cds;Parent=MsG0180004503.01.T03
Chr1 CDS 78943817 78943915 78943817 ID=MsG0180004503.01.T03:cds;Parent=MsG0180004503.01.T03
Chr1 CDS 78943997 78944028 78943997 ID=MsG0180004503.01.T03:cds;Parent=MsG0180004503.01.T03
Chr1 CDS 78944851 78945009 78944851 ID=MsG0180004503.01.T03:cds;Parent=MsG0180004503.01.T03
Chr1 CDS 78945143 78945364 78945143 ID=MsG0180004503.01.T03:cds;Parent=MsG0180004503.01.T03
Chr1 three_prime_UTR 78945365 78945555 78945365 ID=MsG0180004503.01.T03:three_prime_utr;Parent=MsG0180004503.01.T03
Gene Sequence

>MsG0180004503.01.T01

ATGGTGAAGCACAACAATGTTATCCCAAATGAACACTTCCGTAAGCATTGGCAGAACTATGTCAAAACATGGTTCAATCAACCAGCTAGGAAGACCAGGAGACGCTTGGCCCGCCAAAAGAAGGCAGTGAAGATTTTCCCCCGGCCAACCGCTGGACCTTTGAGGCCAATTGTTCACGGTCAAACTGCTAAGTACAACATGAAACTTCATGTTACTTTATGGGCTTGTAGATTTGTGTTGGCTGCCGGTATCCCCAAGAAGCTTGCTCCAACCATTGGCATTTCTGTTGACCATCGCCGCAAGAACCGTTCTTTGGAGGGTCTGCAAGCTAATGTGCAGAGGCTGAAAACATACAAGGCCAAGTTGGTTGTTTTCCCAAGGCGCGCACGCAAGACCAAGGCTGGGGACTCTACACCTGAGGAACTTGCTAATGCCACACAAGTCCAAGGATCATACTTGCCGATTGTGAGGGAGAAGCCAACTGTTGAACTTGTTAAGGTTACAGATGAAATGAAGGCATTCAAAGCTTATTACAAGCTTCGCCTTGAGCGCACCAACAAGCGTCATTTGGGTGCTAGGCTCAAGAGGGCTGCTGAGGCAGAAAAGGAAGACAAGAAGTGA

>MsG0180004503.01.T03

ATGGTGAAGCACAACAATGTTATCCCAAATGAACACTTCCGTAAGCATTGGCAGAACTATGTCAAAACATGGTTCAATCAACCAGCTAGGAAGACCAGGAGACGCTTGGCCCGCCAAAAGAAGGCAGTGAAGATTTTCCCCCGGCCAACCGCTGGACCTTTGAGGCCAATTGTTCACGGTCAAACTGCTAAGTACAACATGAAACTTCATGTTACTTTATGGGCTTGTAGATTTGTGTTGGCTGCCGGTATCCCCAAGAAGCTTGCTCCAACCATTGGCATTTCTGTTGACCATCGCCGCAAGAACCGTTCTTTGGAGGGTCTGCAAGCTAATGTGCAGAGGCTGAAAACATACAAGGCCAAGTTGGTTGTTTTCCCAAGGCGCGCACGCAAGACCAAGGCTGGGGACTCTACACCTGAGGAACTTGCTAATGCCACACAAGTCCAAGGATCATACTTGCCGATTGTGAGGGAGAAGCCAACTGTTGAACTTGTTAAGGTTACAGATGAAATGAAGGCATTCAAAGCTTATTACAAGCTTCGCCTTGAGCGCACCAACAAGCGTCATTTGGGTGCTAGGCTCAAGAGGGCTGCTGAGGCAGAAAAGGAAGACAAGAAGTGA

>MsG0180004503.01.T02

ATGGTGAAGCACAACAATGTTATCCCAAATGAACACTTCCGTAAGCATTGGCAGAACTATGTCAAAACATGGTTCAATCAACCAGCTAGGAAGACCAGGAGACGCTTGGCCCGCCAAAAGAAGGCAGTGAAGATTTTCCCCCGGCCAACCGCTGGACCTTTGAGGCCAATTGTTCACGGTCAAACTGCTAAGTACAACATGAAACTTCATGTTACTTTATGGGCTTGTAGATTTGTGTTGGCTGCCGGTATCCCCAAGAAGCTTGCTCCAACCATTGGCATTTCTGTTGACCATCGCCGCAAGAACCGTTCTTTGGAGGGTCTGCAAGCTAATGTGCAGAGGCTGAAAACATACAAGGCCAAGTTGGTTGTTTTCCCAAGGCGCGCACGCAAGACCAAGGCTGGGGACTCTACACCTGAGGAACTTGCTAATGCCACACAAGTCCAAGGATCATACTTGCCGATTGTGAGGGAGAAGCCAACTGTTGAACTTGTTAAGGTTACAGATGAAATGAAGGCATTCAAAGCTTATTACAAGCTTCGCCTTGAGCGCACCAACAAGCGTCATTTGGGTGCTAGGCTCAAGAGGGCTGCTGAGGCAGAAAAGGAAGACAAGAAGTGA

Protein sequence

>MsG0180004503.01.T01

MVKHNNVIPNEHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTAKYNMKLHVTLWACRFVLAAGIPKKLAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRARKTKAGDSTPEELANATQVQGSYLPIVREKPTVELVKVTDEMKAFKAYYKLRLERTNKRHLGARLKRAAEAEKEDKK*

>MsG0180004503.01.T03

MVKHNNVIPNEHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTAKYNMKLHVTLWACRFVLAAGIPKKLAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRARKTKAGDSTPEELANATQVQGSYLPIVREKPTVELVKVTDEMKAFKAYYKLRLERTNKRHLGARLKRAAEAEKEDKK*

>MsG0180004503.01.T02

MVKHNNVIPNEHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTAKYNMKLHVTLWACRFVLAAGIPKKLAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRARKTKAGDSTPEELANATQVQGSYLPIVREKPTVELVKVTDEMKAFKAYYKLRLERTNKRHLGARLKRAAEAEKEDKK*