AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023609.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023609.01.T01 MTR_8g096930 81.221 213 16 1 56 244 169 381 8.95e-110 343
MsG0480023609.01.T01 MTR_8g096930 57.724 123 20 1 1 123 1 91 1.77e-35 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023609.01.T01 AT5G52230 38.298 94 51 3 45 136 16 104 1.95e-11 63.9
MsG0480023609.01.T01 AT5G52230 38.298 94 51 3 45 136 16 104 1.95e-11 63.9
MsG0480023609.01.T01 AT5G52230 38.298 94 51 3 45 136 16 104 1.95e-11 63.9

Find 82 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTCTTCTACTTGGTTTAA+TGG 0.156026 4:+87601602 None:intergenic
TGTCACTCCATGAGGAAATT+AGG 0.188712 4:+87604575 None:intergenic
TTTGGTAGTAAAGATAAAAT+TGG 0.216167 4:-87604321 MsG0480023609.01.T01:five_prime_UTR
TATTATTTCTTGTTCAAATA+TGG 0.217062 4:-87604654 MsG0480023609.01.T01:five_prime_UTR
TGTCAAATAGAAAACAAATT+TGG 0.254260 4:+87604080 None:intergenic
TTGGTAGTAAAGATAAAATT+GGG 0.274551 4:-87604320 MsG0480023609.01.T01:five_prime_UTR
AAAACGTTGTACATCCTTCT+TGG 0.276092 4:+87601653 None:intergenic
TTCATTATTGATGATTTGTT+TGG 0.280926 4:-87604850 MsG0480023609.01.T01:five_prime_UTR
TAAGCTTTCAACTGGTTCTT+TGG 0.281208 4:+87599543 None:intergenic
TGGTAGAGGGAATGAATTAT+TGG 0.308257 4:-87604149 MsG0480023609.01.T01:five_prime_UTR
TTTGCTATGCTCTAGGTTGC+AGG 0.333766 4:-87602012 MsG0480023609.01.T01:intron
GGCTATGGGATCTGCATATA+AGG 0.346775 4:-87603771 MsG0480023609.01.T01:intron
TCTTGATATTGTCTTCTACT+TGG 0.375662 4:+87601594 None:intergenic
ACCAGTTGAAAGCTTAGAAT+TGG 0.381405 4:-87599536 MsG0480023609.01.T01:CDS
GTCACTCCATGAGGAAATTA+GGG 0.386738 4:+87604576 None:intergenic
TCATTATTGATGATTTGTTT+GGG 0.390581 4:-87604849 MsG0480023609.01.T01:five_prime_UTR
GAAGTGGCATAAAGAAAGAT+TGG 0.392292 4:-87601924 MsG0480023609.01.T01:CDS
CAGCCATTAGGCAACCATTC+AGG 0.393639 4:+87603827 None:intergenic
TGATGATTTGTTTGGGAAAG+TGG 0.397744 4:-87604842 MsG0480023609.01.T01:five_prime_UTR
TGTTTGTGTCAATGCTTCAT+AGG 0.402903 4:-87604189 MsG0480023609.01.T01:five_prime_UTR
GTCATTGTCAATCCGTTTGT+TGG 0.404392 4:+87604002 None:intergenic
CATAGCCGGACCACTTTGTC+GGG 0.414376 4:+87603787 None:intergenic
GCCAATTCTAAGCTTTCAAC+TGG 0.426691 4:+87599535 None:intergenic
AGGGTCAACTTAGTCAAAAT+CGG 0.426939 4:+87604595 None:intergenic
CCGACAAAGTGGTCCGGCTA+TGG 0.429215 4:-87603786 MsG0480023609.01.T01:CDS
TGTCTCTTGGCAGCAGGTGA+TGG 0.429849 4:+87599732 None:intergenic
TGCATGGGTGTAGACTGCTT+TGG 0.439557 4:+87599705 None:intergenic
CAATAATGAAGAAAACGAAA+TGG 0.446177 4:+87604863 None:intergenic
CGTCCTGAATGGTTGCCTAA+TGG 0.454991 4:-87603830 MsG0480023609.01.T01:CDS
CTGAATGGTTGCCTAATGGC+TGG 0.462074 4:-87603826 MsG0480023609.01.T01:CDS
TTTACTTCTTTAATCCATCC+AGG 0.463808 4:+87601961 None:intergenic
ATGGTTGCTCTTGATACCTC+AGG 0.466320 4:-87599460 MsG0480023609.01.T01:CDS
CCATAGCCGGACCACTTTGT+CGG 0.466321 4:+87603786 None:intergenic
AAATTAAACGTGTCAGTGTC+GGG 0.467095 4:-87604217 MsG0480023609.01.T01:five_prime_UTR
TGGATGAAGAAGTAAATTGA+TGG 0.475890 4:-87604822 MsG0480023609.01.T01:five_prime_UTR
ACTTCGATATCCCAGCCATT+AGG 0.479281 4:+87603815 None:intergenic
CGACAAAGTGGTCCGGCTAT+GGG 0.508093 4:-87603785 MsG0480023609.01.T01:CDS
GGACGTTCGTCAGCTTTCTC+CGG 0.508959 4:+87603848 None:intergenic
TAAATTAAACGTGTCAGTGT+CGG 0.510670 4:-87604218 MsG0480023609.01.T01:five_prime_UTR
AAGTGGCATAAAGAAAGATT+GGG 0.512803 4:-87601923 MsG0480023609.01.T01:intron
GTTGTACATCCTTCTTGGAA+TGG 0.513958 4:+87601658 None:intergenic
GGATTAAAGAAGTAAAGATT+CGG 0.519086 4:-87601954 MsG0480023609.01.T01:CDS
ACGAAATGGATAATAATTGA+AGG 0.522574 4:+87604877 None:intergenic
ACATTGTCAACCAACTTGAC+AGG 0.528995 4:+87599343 None:intergenic
AGTTGACCCTAATTTCCTCA+TGG 0.532617 4:-87604582 MsG0480023609.01.T01:five_prime_UTR
ACTTGGTTTAATGGCACACT+TGG 0.538980 4:+87601611 None:intergenic
TGGCCGATGTTAACAACTCA+AGG 0.544179 4:-87599516 MsG0480023609.01.T01:CDS
TGGAATACATATCCACTCAC+TGG 0.551219 4:+87601678 None:intergenic
ATGTTAACAACTCAAGGAAA+GGG 0.551542 4:-87599510 MsG0480023609.01.T01:CDS
AAGCTGACGAACGTCCTGAA+TGG 0.559865 4:-87603841 MsG0480023609.01.T01:CDS
AATCTGGAGGAACCAACAAA+CGG 0.560339 4:-87604014 MsG0480023609.01.T01:CDS
TGAATGGTTGCCTAATGGCT+GGG 0.565873 4:-87603825 MsG0480023609.01.T01:CDS
TAGAACCCGACAAAGTGGTC+CGG 0.570129 4:-87603792 MsG0480023609.01.T01:CDS
GATGTTAACAACTCAAGGAA+AGG 0.573089 4:-87599511 MsG0480023609.01.T01:CDS
TGGAGGATCTACCACCTGGA+TGG 0.573332 4:-87601975 MsG0480023609.01.T01:CDS
TTTCTTGTTCAAATATGGTG+AGG 0.574333 4:-87604649 MsG0480023609.01.T01:five_prime_UTR
TTTCCTTGAGTTGTTAACAT+CGG 0.581383 4:+87599513 None:intergenic
ATTGTGGAGGATCTACCACC+TGG 0.589100 4:-87601979 MsG0480023609.01.T01:CDS
ATGATGTCAATGTGAGCCAT+CGG 0.593372 4:-87599393 MsG0480023609.01.T01:CDS
TGGTTGCTCTTGATACCTCA+GGG 0.594405 4:-87599459 MsG0480023609.01.T01:CDS
GGGGCAGTCCAACACCTACA+TGG 0.595155 4:-87604300 MsG0480023609.01.T01:five_prime_UTR
ATCTAGACACAGGAAATGCA+TGG 0.605621 4:+87604774 None:intergenic
GAATGTGCCATCTCGAATGA+TGG 0.609217 4:-87599479 MsG0480023609.01.T01:CDS
CCAGTCTCCGTGAAAACCGA+TGG 0.611124 4:+87599377 None:intergenic
TGGTGTTGAACCTGTCAAGT+TGG 0.614025 4:-87599353 MsG0480023609.01.T01:CDS
GAAGTTAGAACCCGACAAAG+TGG 0.615611 4:-87603797 MsG0480023609.01.T01:CDS
AGGCGAGAATTCCATTGTGG+AGG 0.616015 4:-87601992 MsG0480023609.01.T01:CDS
TTATATGCAGATCCCATAGC+CGG 0.616036 4:+87603773 None:intergenic
TGGTAGTAAAGATAAAATTG+GGG 0.616045 4:-87604319 MsG0480023609.01.T01:five_prime_UTR
TGAAGCATTGACACAAACAC+TGG 0.618184 4:+87604193 None:intergenic
AAGATTCGGAAGCACAGAAG+TGG 0.628849 4:-87601940 MsG0480023609.01.T01:CDS
AGAGCAACCATCATTCGAGA+TGG 0.634631 4:+87599472 None:intergenic
TGACAATGTGATTAATGATG+AGG 0.636184 4:-87599329 MsG0480023609.01.T01:CDS
TGCAGGCGAGAATTCCATTG+TGG 0.639433 4:-87601995 MsG0480023609.01.T01:CDS
GCGGACATGTGTAGCCATGT+AGG 0.641253 4:+87604286 None:intergenic
ATAGAAATGAATCTAGACAC+AGG 0.645459 4:+87604764 None:intergenic
ATGTGTAGCCATGTAGGTGT+TGG 0.657922 4:+87604292 None:intergenic
ATATGTATTCCATTCCAAGA+AGG 0.660953 4:-87601667 MsG0480023609.01.T01:CDS
AGGTGGTAGATCCTCCACAA+TGG 0.665682 4:+87601981 None:intergenic
ACATGTGTGAGTGTCAGTTG+CGG 0.703758 4:+87604267 None:intergenic
ACTTCTTTAATCCATCCAGG+TGG 0.722254 4:+87601964 None:intergenic
GGTTGCTCTTGATACCTCAG+GGG 0.734372 4:-87599458 MsG0480023609.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATTTATTCATATACA+AGG + Chr4:87600672-87600691 None:intergenic 10.0%
!! TATTAAGAAATTAAAAAAGA+TGG - Chr4:87602384-87602403 MsG0480023609.01.T01:intron 10.0%
!!! CTATAAATGAAATATATTTT+AGG - Chr4:87604554-87604573 MsG0480023609.01.T01:five_prime_UTR 10.0%
!!! TTTTTTTTCTTAATTATTGT+TGG - Chr4:87604211-87604230 MsG0480023609.01.T01:five_prime_UTR 10.0%
!! AAAATGACAAGTAAAAAAAA+CGG + Chr4:87602811-87602830 None:intergenic 15.0%
!! AAACATAAAAATAACTAACA+TGG + Chr4:87603816-87603835 None:intergenic 15.0%
!! CAACTTCTAATAATAATTAA+AGG + Chr4:87602137-87602156 None:intergenic 15.0%
!! TTATTGAAATAATATTGTGA+TGG - Chr4:87603371-87603390 MsG0480023609.01.T01:intron 15.0%
!!! AAATATTTTCACAAAGTAAA+CGG - Chr4:87603559-87603578 MsG0480023609.01.T01:intron 15.0%
!!! AATTCTTGTTATTAAGATAA+AGG - Chr4:87604101-87604120 MsG0480023609.01.T01:five_prime_UTR 15.0%
!!! GTTTTTTAATACAGTTTATT+GGG + Chr4:87603743-87603762 None:intergenic 15.0%
!!! TATTATTTCTTGTTCAAATA+TGG - Chr4:87599560-87599579 MsG0480023609.01.T01:intron 15.0%
!!! TCATTACTCTTTATTTTTTT+TGG - Chr4:87599875-87599894 MsG0480023609.01.T01:intron 15.0%
!!! TTCAAATCATATTTGAATTT+TGG + Chr4:87604189-87604208 None:intergenic 15.0%
!!! TTTAATTTGTCTTTCTTTTA+TGG - Chr4:87599527-87599546 MsG0480023609.01.T01:CDS 15.0%
!! AAAATGAAATTAATGACACA+TGG - Chr4:87602979-87602998 MsG0480023609.01.T01:intron 20.0%
!! AACAAGTAAAGTAAACAAAA+CGG + Chr4:87601722-87601741 None:intergenic 20.0%
!! ACCATTTAATTATCATTGTA+TGG + Chr4:87602897-87602916 None:intergenic 20.0%
!! ATACTTAAACAAATTATGAC+TGG - Chr4:87602485-87602504 MsG0480023609.01.T01:intron 20.0%
!! ATAGAAAATAAATACCAACA+AGG + Chr4:87600966-87600985 None:intergenic 20.0%
!! ATCTGTAAAAATTTCTTCAT+TGG + Chr4:87601790-87601809 None:intergenic 20.0%
!! ATGTAATTTACCTTTATGAA+TGG - Chr4:87604027-87604046 MsG0480023609.01.T01:CDS 20.0%
!! TAATTATTATTAGAAGTTGC+TGG - Chr4:87602138-87602157 MsG0480023609.01.T01:intron 20.0%
!! TACTTAAACAAATTATGACT+GGG - Chr4:87602486-87602505 MsG0480023609.01.T01:intron 20.0%
!! TAGAATTTGTATGTATTTGA+TGG + Chr4:87601215-87601234 None:intergenic 20.0%
!! TATGTAATTAACTATTGAAG+AGG + Chr4:87601057-87601076 None:intergenic 20.0%
!! TCATTTAAGTATTAAAAGAG+AGG + Chr4:87603639-87603658 None:intergenic 20.0%
!! TCCATACAATGATAATTAAA+TGG - Chr4:87602893-87602912 MsG0480023609.01.T01:intron 20.0%
!! TCTGTAAAAATTTCTTCATT+GGG + Chr4:87601789-87601808 None:intergenic 20.0%
!! TGTCAAATAGAAAACAAATT+TGG + Chr4:87600137-87600156 None:intergenic 20.0%
!! TGTCCTTAAATTTAGATTTA+CGG + Chr4:87603008-87603027 None:intergenic 20.0%
!! TTCAATAGTTAATTACATAC+TGG - Chr4:87601058-87601077 MsG0480023609.01.T01:intron 20.0%
!! TTTAAAAACCACAAGTATTA+AGG + Chr4:87602786-87602805 None:intergenic 20.0%
!!! AAAAGTTTCTTTTAAATGTC+TGG - Chr4:87601102-87601121 MsG0480023609.01.T01:intron 20.0%
!!! AACTATTTTTTGACAACTTT+TGG - Chr4:87599718-87599737 MsG0480023609.01.T01:CDS 20.0%
!!! AATATTTTCACAAAGTAAAC+GGG - Chr4:87603560-87603579 MsG0480023609.01.T01:intron 20.0%
!!! AATTTCTTTTTATGTTTTGC+TGG - Chr4:87602319-87602338 MsG0480023609.01.T01:intron 20.0%
!!! ACATTAGTTTGTATTTGTAA+TGG - Chr4:87600882-87600901 MsG0480023609.01.T01:intron 20.0%
!!! ACTTTTTAAACAGTAATTGT+AGG + Chr4:87602462-87602481 None:intergenic 20.0%
!!! ATGCTGTTCTAAAATAAAAA+TGG - Chr4:87601834-87601853 MsG0480023609.01.T01:intron 20.0%
!!! CGTTTTTTAATACAGTTTAT+TGG + Chr4:87603744-87603763 None:intergenic 20.0%
!!! GATTTCATGATATTGATTAT+TGG - Chr4:87602094-87602113 MsG0480023609.01.T01:intron 20.0%
!!! TAATGCATATGTGTTTTTAT+GGG - Chr4:87602033-87602052 MsG0480023609.01.T01:intron 20.0%
!!! TAATTTTGATGTTACTTTGA+TGG - Chr4:87603947-87603966 MsG0480023609.01.T01:intron 20.0%
!!! TCATTATTGATGATTTGTTT+GGG - Chr4:87599365-87599384 MsG0480023609.01.T01:CDS 20.0%
!!! TGTGTCATTAATTTCATTTT+CGG + Chr4:87602979-87602998 None:intergenic 20.0%
!!! TTCATTATTGATGATTTGTT+TGG - Chr4:87599364-87599383 MsG0480023609.01.T01:CDS 20.0%
!!! TTGGTAGTAAAGATAAAATT+GGG - Chr4:87599894-87599913 MsG0480023609.01.T01:intron 20.0%
!!! TTTAAAAACGTTTACACTTT+TGG - Chr4:87603833-87603852 MsG0480023609.01.T01:CDS 20.0%
!!! TTTGGTAGTAAAGATAAAAT+TGG - Chr4:87599893-87599912 MsG0480023609.01.T01:intron 20.0%
!!! TTTGTGATTTTTGTATACTT+GGG - Chr4:87601988-87602007 MsG0480023609.01.T01:CDS 20.0%
!!! TTTTGTGATTTTTGTATACT+TGG - Chr4:87601987-87602006 MsG0480023609.01.T01:CDS 20.0%
! AAACCAAACGTTAAAAAATC+TGG - Chr4:87600184-87600203 MsG0480023609.01.T01:intron 25.0%
! AAAGTTGAAATACAAAGAAG+CGG + Chr4:87604642-87604661 None:intergenic 25.0%
! AAAGTTTGAAGATGAATTTG+TGG - Chr4:87602920-87602939 MsG0480023609.01.T01:intron 25.0%
! AAGAACTAACTATTGAAAAC+TGG + Chr4:87600551-87600570 None:intergenic 25.0%
! AAGATGATTAATGAGAGATA+TGG + Chr4:87602865-87602884 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - Chr4:87599815-87599834 MsG0480023609.01.T01:intron 25.0%
! AATTGTGATGTCATAGAATA+GGG + Chr4:87601642-87601661 None:intergenic 25.0%
! ACGAAATGGATAATAATTGA+AGG + Chr4:87599340-87599359 None:intergenic 25.0%
! AGATGATTAATGAGAGATAT+GGG + Chr4:87602864-87602883 None:intergenic 25.0%
! AGATGTTAAATTGATGAAGT+GGG - Chr4:87603663-87603682 MsG0480023609.01.T01:intron 25.0%
! ATGCGATCGAAAAAAAATAA+AGG - Chr4:87603587-87603606 MsG0480023609.01.T01:intron 25.0%
! CAATAATGAAGAAAACGAAA+TGG + Chr4:87599354-87599373 None:intergenic 25.0%
! CTAAACATGAAAAATAAAGC+GGG - Chr4:87603103-87603122 MsG0480023609.01.T01:intron 25.0%
! GAATGGATCTTTAAATTTGA+TGG + Chr4:87601603-87601622 None:intergenic 25.0%
! GATAACAAACAGAAAAAGAA+AGG + Chr4:87601569-87601588 None:intergenic 25.0%
! GCTAAACATGAAAAATAAAG+CGG - Chr4:87603102-87603121 MsG0480023609.01.T01:intron 25.0%
! GGATTAAAGAAGTAAAGATT+CGG - Chr4:87602260-87602279 MsG0480023609.01.T01:intron 25.0%
! GTAATGAATAGTGATAAGAA+TGG + Chr4:87601620-87601639 None:intergenic 25.0%
! GTGAATAATTTCGTTATTCT+TGG - Chr4:87604439-87604458 MsG0480023609.01.T01:intron 25.0%
! TAAACATGAAAAATAAAGCG+GGG - Chr4:87603104-87603123 MsG0480023609.01.T01:intron 25.0%
! TAATTGTGATGTCATAGAAT+AGG + Chr4:87601643-87601662 None:intergenic 25.0%
! TAGGTGATTATATATTCTCT+TGG + Chr4:87603143-87603162 None:intergenic 25.0%
! TGGTAGTAAAGATAAAATTG+GGG - Chr4:87599895-87599914 MsG0480023609.01.T01:intron 25.0%
! TGTAAGTATTTCACGTTATA+GGG - Chr4:87601922-87601941 MsG0480023609.01.T01:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + Chr4:87599803-87599822 None:intergenic 25.0%
! TTGTAAGTATTTCACGTTAT+AGG - Chr4:87601921-87601940 MsG0480023609.01.T01:intron 25.0%
! TTGTCAATCTTTCAACAATT+TGG + Chr4:87602727-87602746 None:intergenic 25.0%
! TTGTTGTAAAGAAAGAATCA+TGG - Chr4:87601737-87601756 MsG0480023609.01.T01:intron 25.0%
!! AAAAGATAGAAAAGGTATAG+AGG + Chr4:87601545-87601564 None:intergenic 25.0%
!! AACATAAGCATGCTATTTAA+TGG - Chr4:87604367-87604386 MsG0480023609.01.T01:intron 25.0%
!! ACATAAGCATGCTATTTAAT+GGG - Chr4:87604368-87604387 MsG0480023609.01.T01:intron 25.0%
!! AGCTAAAAACAATTCAAGTT+AGG - Chr4:87603187-87603206 MsG0480023609.01.T01:intron 25.0%
!! AGTATCATCCTAGAATTTTA+TGG - Chr4:87601693-87601712 MsG0480023609.01.T01:CDS 25.0%
!! ATATTTTCACAAAGTAAACG+GGG - Chr4:87603561-87603580 MsG0480023609.01.T01:intron 25.0%
!! CTTAATAAAAACCTCCTTTT+TGG + Chr4:87602371-87602390 None:intergenic 25.0%
!! GTTTTTATGGGGAAAAAAAA+AGG - Chr4:87602045-87602064 MsG0480023609.01.T01:intron 25.0%
!!! AAGAATCACTAGATTTGTTT+TGG + Chr4:87604146-87604165 None:intergenic 25.0%
!!! AATGCATATGTGTTTTTATG+GGG - Chr4:87602034-87602053 MsG0480023609.01.T01:intron 25.0%
!!! AGAATCACTAGATTTGTTTT+GGG + Chr4:87604145-87604164 None:intergenic 25.0%
!!! ATAAAATTCTAGGATGATAC+TGG + Chr4:87601694-87601713 None:intergenic 25.0%
!!! CTAATGCATATGTGTTTTTA+TGG - Chr4:87602032-87602051 MsG0480023609.01.T01:intron 25.0%
!!! CTTGTCATTTTGATAGTTTA+AGG - Chr4:87602820-87602839 MsG0480023609.01.T01:intron 25.0%
!!! TGAAGACTTTTTTCTTTTCT+AGG - Chr4:87600273-87600292 MsG0480023609.01.T01:intron 25.0%
!!! TTATTTTTTTTCGATCGCAT+AGG + Chr4:87603587-87603606 None:intergenic 25.0%
!!! TTCAGTTTTATCTAAGATTG+TGG + Chr4:87603916-87603935 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + Chr4:87599816-87599835 None:intergenic 25.0%
AAAACAATGGAGAGAGAAAA+AGG + Chr4:87599790-87599809 None:intergenic 30.0%
AAAAGCAGCAATAATGAGAT+AGG + Chr4:87602681-87602700 None:intergenic 30.0%
AAACATGAAAAATAAAGCGG+GGG - Chr4:87603105-87603124 MsG0480023609.01.T01:intron 30.0%
AAATATGTAACAGAAGGATG+GGG + Chr4:87603872-87603891 None:intergenic 30.0%
AAGTGGCATAAAGAAAGATT+GGG - Chr4:87602291-87602310 MsG0480023609.01.T01:intron 30.0%
AAGTTGAAATACAAAGAAGC+GGG + Chr4:87604641-87604660 None:intergenic 30.0%
AATACAAACTAATGTGAGCA+TGG + Chr4:87600877-87600896 None:intergenic 30.0%
ACAAATATGTAACAGAAGGA+TGG + Chr4:87603874-87603893 None:intergenic 30.0%
ACGACATCTTGAAACTATAA+AGG - Chr4:87601252-87601271 MsG0480023609.01.T01:intron 30.0%
ACTTTGCATGTAGACTTAAA+AGG + Chr4:87600635-87600654 None:intergenic 30.0%
AGAAAGGCAAAAGATAGAAA+AGG + Chr4:87601553-87601572 None:intergenic 30.0%
AGAAGATGAAATGCTAGTTA+GGG - Chr4:87603396-87603415 MsG0480023609.01.T01:intron 30.0%
ATAAAATTAGGCCTTAAGCT+GGG + Chr4:87601864-87601883 None:intergenic 30.0%
ATAGAAATGAATCTAGACAC+AGG + Chr4:87599453-87599472 None:intergenic 30.0%
ATATCAAACAAGCTAATCCT+TGG - Chr4:87603704-87603723 MsG0480023609.01.T01:intron 30.0%
ATATGTATTCCATTCCAAGA+AGG - Chr4:87602547-87602566 MsG0480023609.01.T01:intron 30.0%
ATGAAATTAATGACACATGG+TGG - Chr4:87602982-87603001 MsG0480023609.01.T01:intron 30.0%
ATGCCAATGAAAATTTGTGA+AGG + Chr4:87604336-87604355 None:intergenic 30.0%
ATGTTAACAACTCAAGGAAA+GGG - Chr4:87604704-87604723 MsG0480023609.01.T01:five_prime_UTR 30.0%
CAAATATGTAACAGAAGGAT+GGG + Chr4:87603873-87603892 None:intergenic 30.0%
CATATTCTTCATCCTTAAGT+TGG + Chr4:87604598-87604617 None:intergenic 30.0%
CATGGAAAGATAATGAGATT+TGG - Chr4:87604074-87604093 MsG0480023609.01.T01:five_prime_UTR 30.0%
CTGGATCAATATAAAACTGT+TGG + Chr4:87602520-87602539 None:intergenic 30.0%
GAGATGTTAAATTGATGAAG+TGG - Chr4:87603662-87603681 MsG0480023609.01.T01:intron 30.0%
GGAATAAATACCAGTAGTTA+CGG - Chr4:87603208-87603227 MsG0480023609.01.T01:intron 30.0%
GTACACAAATATGTAACAGA+AGG + Chr4:87603878-87603897 None:intergenic 30.0%
TAAATTAAACGTGTCAGTGT+CGG - Chr4:87599996-87600015 MsG0480023609.01.T01:intron 30.0%
TATTGATATGCCTGAAAAGT+TGG + Chr4:87601003-87601022 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG - Chr4:87599841-87599860 MsG0480023609.01.T01:intron 30.0%
TCATACTTGACCATTCATAA+AGG + Chr4:87604040-87604059 None:intergenic 30.0%
TCTTGATATTGTCTTCTACT+TGG + Chr4:87602623-87602642 None:intergenic 30.0%
TGACAATGTGATTAATGATG+AGG - Chr4:87604885-87604904 MsG0480023609.01.T01:five_prime_UTR 30.0%
TGATGAAGTGGGTATATAAT+AGG - Chr4:87603674-87603693 MsG0480023609.01.T01:intron 30.0%
TGGATGAAGAAGTAAATTGA+TGG - Chr4:87599392-87599411 MsG0480023609.01.T01:CDS 30.0%
TGGCCGTAAATCTAAATTTA+AGG - Chr4:87603002-87603021 MsG0480023609.01.T01:intron 30.0%
TGTATATGAGCAAGTTAGAA+GGG - Chr4:87603065-87603084 MsG0480023609.01.T01:intron 30.0%
TGTATCATAATTTCAGACTC+CGG - Chr4:87600347-87600366 MsG0480023609.01.T01:intron 30.0%
TGTCAAAAGTTGTCCTAAAT+CGG - Chr4:87600820-87600839 MsG0480023609.01.T01:intron 30.0%
TTATCCATGACTGATAGTAT+AGG + Chr4:87603162-87603181 None:intergenic 30.0%
TTGTATATGAGCAAGTTAGA+AGG - Chr4:87603064-87603083 MsG0480023609.01.T01:intron 30.0%
TTGTCTTCTACTTGGTTTAA+TGG + Chr4:87602615-87602634 None:intergenic 30.0%
TTTACTTCTTTAATCCATCC+AGG + Chr4:87602256-87602275 None:intergenic 30.0%
TTTCTTGTTCAAATATGGTG+AGG - Chr4:87599565-87599584 MsG0480023609.01.T01:intron 30.0%
! ACAGTTTATTGGGCATTTTT+GGG + Chr4:87603733-87603752 None:intergenic 30.0%
! ACATACTGGCTATTATCAAA+AGG - Chr4:87601072-87601091 MsG0480023609.01.T01:intron 30.0%
! ACCAACAAAAATCTTTTGCA+TGG + Chr4:87604528-87604547 None:intergenic 30.0%
! AGGTTAGAATACATGTTTTC+TGG - Chr4:87600045-87600064 MsG0480023609.01.T01:intron 30.0%
! ATCATCCTAGAATTTTATGG+CGG - Chr4:87601696-87601715 MsG0480023609.01.T01:intron 30.0%
! ATGTTCACGACTTTAACTTA+TGG - Chr4:87600749-87600768 MsG0480023609.01.T01:intron 30.0%
! CATACTGGCTATTATCAAAA+GGG - Chr4:87601073-87601092 MsG0480023609.01.T01:intron 30.0%
! CCAACAAAAATCTTTTGCAT+GGG + Chr4:87604527-87604546 None:intergenic 30.0%
! GTTACTGTGATTCATTTTCA+AGG + Chr4:87604785-87604804 None:intergenic 30.0%
! TACAGTTTATTGGGCATTTT+TGG + Chr4:87603734-87603753 None:intergenic 30.0%
! TATAAGTTTAGAACTGTGTC+TGG - Chr4:87601661-87601680 MsG0480023609.01.T01:CDS 30.0%
! TGAACAATAGTGTGCATTTT+TGG + Chr4:87603474-87603493 None:intergenic 30.0%
! TGGTTTTCCCATTTTCAAAA+AGG + Chr4:87600170-87600189 None:intergenic 30.0%
! TGTCCTTCACAAATTTTCAT+TGG - Chr4:87604330-87604349 MsG0480023609.01.T01:intron 30.0%
! TTTCCTTGAGTTGTTAACAT+CGG + Chr4:87604704-87604723 None:intergenic 30.0%
! TTTTATATTGATCCAGTGAG+TGG - Chr4:87602524-87602543 MsG0480023609.01.T01:intron 30.0%
!! AATACATGTTTTCTGGTAGA+GGG - Chr4:87600052-87600071 MsG0480023609.01.T01:intron 30.0%
!! ATAAGCTGCCTTTTTGAAAA+TGG - Chr4:87600159-87600178 MsG0480023609.01.T01:intron 30.0%
!! ATGCAAAGTTCTAAAGTTTC+TGG - Chr4:87600646-87600665 MsG0480023609.01.T01:intron 30.0%
!! CATCATTTTTGGATATGCTA+TGG + Chr4:87604807-87604826 None:intergenic 30.0%
!! TAAGCTGCCTTTTTGAAAAT+GGG - Chr4:87600160-87600179 MsG0480023609.01.T01:intron 30.0%
!!! AGACTTTTTTCTTTTCTAGG+AGG - Chr4:87600276-87600295 MsG0480023609.01.T01:intron 30.0%
!!! TCGGAAGAAAGAAGTTTTTT+CGG + Chr4:87602960-87602979 None:intergenic 30.0%
!!! TTTTAGTTTTGCTATGCTCT+AGG - Chr4:87602195-87602214 MsG0480023609.01.T01:intron 30.0%
!!! TTTTTTTCTTCCCATGTGTA+TGG - Chr4:87600795-87600814 MsG0480023609.01.T01:intron 30.0%
AAAAAACTTGTCACTCCATG+AGG + Chr4:87599650-87599669 None:intergenic 35.0%
AAAACGTTGTACATCCTTCT+TGG + Chr4:87602564-87602583 None:intergenic 35.0%
AAATTAAACGTGTCAGTGTC+GGG - Chr4:87599997-87600016 MsG0480023609.01.T01:intron 35.0%
AACATGCATTCTCCAAACAA+GGG - Chr4:87601437-87601456 MsG0480023609.01.T01:intron 35.0%
AAGATTGACAAATTTGCAGC+TGG - Chr4:87602736-87602755 MsG0480023609.01.T01:intron 35.0%
AAGGTCAACCATTAGTGAAA+TGG + Chr4:87600616-87600635 None:intergenic 35.0%
AATATGCAAACCGTAACTAC+TGG + Chr4:87603221-87603240 None:intergenic 35.0%
ACCAGTTGAAAGCTTAGAAT+TGG - Chr4:87604678-87604697 MsG0480023609.01.T01:five_prime_UTR 35.0%
AGATTGACAAATTTGCAGCT+GGG - Chr4:87602737-87602756 MsG0480023609.01.T01:intron 35.0%
AGGGTCAACTTAGTCAAAAT+CGG + Chr4:87599622-87599641 None:intergenic 35.0%
ATCACCTATACTATCAGTCA+TGG - Chr4:87603155-87603174 MsG0480023609.01.T01:intron 35.0%
ATTAGTGAAATGGATCTCTG+GGG + Chr4:87600606-87600625 None:intergenic 35.0%
CACAAGTATTAAGGATCAGA+GGG + Chr4:87602777-87602796 None:intergenic 35.0%
CATAAAATTAGGCCTTAAGC+TGG + Chr4:87601865-87601884 None:intergenic 35.0%
CATTAGTGAAATGGATCTCT+GGG + Chr4:87600607-87600626 None:intergenic 35.0%
CCAAACGTTAAAAAATCTGG+AGG - Chr4:87600187-87600206 MsG0480023609.01.T01:intron 35.0%
GAAGTGGCATAAAGAAAGAT+TGG - Chr4:87602290-87602309 MsG0480023609.01.T01:intron 35.0%
GAGAAGATGAAATGCTAGTT+AGG - Chr4:87603395-87603414 MsG0480023609.01.T01:intron 35.0%
GATCAATGTAACACTGTAAC+AGG + Chr4:87601193-87601212 None:intergenic 35.0%
GATGTTAACAACTCAAGGAA+AGG - Chr4:87604703-87604722 MsG0480023609.01.T01:five_prime_UTR 35.0%
GTATATGAGCAAGTTAGAAG+GGG - Chr4:87603066-87603085 MsG0480023609.01.T01:intron 35.0%
GTGAAGGACATTATTCAGTT+AGG + Chr4:87604320-87604339 None:intergenic 35.0%
TAACATGCATTCTCCAAACA+AGG - Chr4:87601436-87601455 MsG0480023609.01.T01:intron 35.0%
TACGGTTTGCATATTAGTGT+TGG - Chr4:87603226-87603245 MsG0480023609.01.T01:intron 35.0%
TCATTGGGTTTGTACTTACA+GGG + Chr4:87601774-87601793 None:intergenic 35.0%
TGACCCAACCACATAAAATT+AGG + Chr4:87601876-87601895 None:intergenic 35.0%
TGATTAATGAGAGATATGGG+CGG + Chr4:87602861-87602880 None:intergenic 35.0%
TGCTCTTCCAATAAGAAGAA+AGG - Chr4:87601282-87601301 MsG0480023609.01.T01:intron 35.0%
TGGTAGAGGGAATGAATTAT+TGG - Chr4:87600065-87600084 MsG0480023609.01.T01:intron 35.0%
TGTTTGTGTCAATGCTTCAT+AGG - Chr4:87600025-87600044 MsG0480023609.01.T01:intron 35.0%
TTCAAGATGTCGTAATACTC+AGG + Chr4:87601245-87601264 None:intergenic 35.0%
TTCATTGGGTTTGTACTTAC+AGG + Chr4:87601775-87601794 None:intergenic 35.0%
! AAGGCCTAATTTTATGTGGT+TGG - Chr4:87601869-87601888 MsG0480023609.01.T01:intron 35.0%
! AGGCCTAATTTTATGTGGTT+GGG - Chr4:87601870-87601889 MsG0480023609.01.T01:intron 35.0%
! AGTTAGGGATGATGCATTTT+TGG - Chr4:87603411-87603430 MsG0480023609.01.T01:intron 35.0%
! CCCATGCAAAAGATTTTTGT+TGG - Chr4:87604524-87604543 MsG0480023609.01.T01:intron 35.0%
! CTAATGTTGACCAACTTTTC+AGG - Chr4:87600990-87601009 MsG0480023609.01.T01:intron 35.0%
! GAATGGTCAAGTATGACTTT+TGG - Chr4:87604044-87604063 MsG0480023609.01.T01:exon 35.0%
! GCTCACATTGACATCATTTT+TGG + Chr4:87604818-87604837 None:intergenic 35.0%
! GCTTAAGGCCTAATTTTATG+TGG - Chr4:87601865-87601884 MsG0480023609.01.T01:intron 35.0%
! GTACAACGTTTTCTCAAATC+TGG - Chr4:87602572-87602591 MsG0480023609.01.T01:intron 35.0%
! GTTGTTGTTGTTGTTGTTGT+TGG - Chr4:87604268-87604287 MsG0480023609.01.T01:five_prime_UTR 35.0%
! TAAGCTTTCAACTGGTTCTT+TGG + Chr4:87604674-87604693 None:intergenic 35.0%
! TGTGATTTTGTACTCCTTGT+TGG - Chr4:87600949-87600968 MsG0480023609.01.T01:intron 35.0%
! TTGGAAAGCTTTTGTTCTGA+GGG - Chr4:87603245-87603264 MsG0480023609.01.T01:intron 35.0%
! TTTTGACAGTCCATACACAT+GGG + Chr4:87600808-87600827 None:intergenic 35.0%
!! GAATACATGTTTTCTGGTAG+AGG - Chr4:87600051-87600070 MsG0480023609.01.T01:intron 35.0%
!! GATGTTACTTTGATGGATTG+TGG - Chr4:87603954-87603973 MsG0480023609.01.T01:intron 35.0%
!! GTGGATTCTGGCTATTATTT+TGG - Chr4:87603973-87603992 MsG0480023609.01.T01:intron 35.0%
!! TGATGATTTGTTTGGGAAAG+TGG - Chr4:87599372-87599391 MsG0480023609.01.T01:CDS 35.0%
!!! CATGGAGTGACAAGTTTTTT+AGG - Chr4:87599650-87599669 MsG0480023609.01.T01:intron 35.0%
!!! CCTCCAGATTTTTTAACGTT+TGG + Chr4:87600190-87600209 None:intergenic 35.0%
!!! CGGAAGAAAGAAGTTTTTTC+GGG + Chr4:87602959-87602978 None:intergenic 35.0%
AACCAAGTGACAAGTGAGAA+AGG + Chr4:87600325-87600344 None:intergenic 40.0%
AATCTGGAGGAACCAACAAA+CGG - Chr4:87600200-87600219 MsG0480023609.01.T01:intron 40.0%
ACATGCATTCTCCAAACAAG+GGG - Chr4:87601438-87601457 MsG0480023609.01.T01:intron 40.0%
ACATTGTCAACCAACTTGAC+AGG + Chr4:87604874-87604893 None:intergenic 40.0%
ACTTCTTTAATCCATCCAGG+TGG + Chr4:87602253-87602272 None:intergenic 40.0%
ACTTGGTTTAATGGCACACT+TGG + Chr4:87602606-87602625 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG + Chr4:87599780-87599799 None:intergenic 40.0%
AGTTGACCCTAATTTCCTCA+TGG - Chr4:87599632-87599651 MsG0480023609.01.T01:intron 40.0%
ATCTAGACACAGGAAATGCA+TGG + Chr4:87599443-87599462 None:intergenic 40.0%
ATGATGTCAATGTGAGCCAT+CGG - Chr4:87604821-87604840 MsG0480023609.01.T01:five_prime_UTR 40.0%
CCACAAGTATTAAGGATCAG+AGG + Chr4:87602778-87602797 None:intergenic 40.0%
CCAGAGATCCATTTCACTAA+TGG - Chr4:87600605-87600624 MsG0480023609.01.T01:intron 40.0%
CCATTAGTGAAATGGATCTC+TGG + Chr4:87600608-87600627 None:intergenic 40.0%
CCTCTGATCCTTAATACTTG+TGG - Chr4:87602775-87602794 MsG0480023609.01.T01:intron 40.0%
CTTCAAGCTCAACCAACTTA+AGG - Chr4:87604583-87604602 MsG0480023609.01.T01:five_prime_UTR 40.0%
GATATCACGCTATAAACCAC+AGG + Chr4:87602440-87602459 None:intergenic 40.0%
GATGTCGTAATACTCAGGTT+TGG + Chr4:87601240-87601259 None:intergenic 40.0%
GCCAATTCTAAGCTTTCAAC+TGG + Chr4:87604682-87604701 None:intergenic 40.0%
GCTAGTGCCTTTCTTCTTAT+TGG + Chr4:87601292-87601311 None:intergenic 40.0%
GTCACTCCATGAGGAAATTA+GGG + Chr4:87599641-87599660 None:intergenic 40.0%
GTCATTGTCAATCCGTTTGT+TGG + Chr4:87600215-87600234 None:intergenic 40.0%
GTTGTACATCCTTCTTGGAA+TGG + Chr4:87602559-87602578 None:intergenic 40.0%
TAGCAAGCATTCTCCAAACA+AGG - Chr4:87601308-87601327 MsG0480023609.01.T01:intron 40.0%
TATGGGATCTGCATATAAGG+TGG - Chr4:87600446-87600465 MsG0480023609.01.T01:intron 40.0%
TGGAATACATATCCACTCAC+TGG + Chr4:87602539-87602558 None:intergenic 40.0%
TGTCACTCCATGAGGAAATT+AGG + Chr4:87599642-87599661 None:intergenic 40.0%
TTAGTGAAATGGATCTCTGG+GGG + Chr4:87600605-87600624 None:intergenic 40.0%
TTATATGCAGATCCCATAGC+CGG + Chr4:87600444-87600463 None:intergenic 40.0%
! AAATCGGTGAGCTGGATTTT+GGG - Chr4:87600836-87600855 MsG0480023609.01.T01:intron 40.0%
! AATTTTCTGCCCCACTTAGT+GGG - Chr4:87604235-87604254 MsG0480023609.01.T01:five_prime_UTR 40.0%
! CAAGTCTTGTACTAACGTAC+TGG + Chr4:87603047-87603066 None:intergenic 40.0%
! CTTTTGACAGTCCATACACA+TGG + Chr4:87600809-87600828 None:intergenic 40.0%
! GTTGGAAAGCTTTTGTTCTG+AGG - Chr4:87603244-87603263 MsG0480023609.01.T01:intron 40.0%
! TAAATCGGTGAGCTGGATTT+TGG - Chr4:87600835-87600854 MsG0480023609.01.T01:intron 40.0%
! TAATTTTCTGCCCCACTTAG+TGG - Chr4:87604234-87604253 MsG0480023609.01.T01:five_prime_UTR 40.0%
! TTTTTCTCTTCCTCCTTGCT+TGG + Chr4:87601368-87601387 None:intergenic 40.0%
!! AAAATCCAGCTCACCGATTT+AGG + Chr4:87600836-87600855 None:intergenic 40.0%
!! ATAGGGTGTTTTTGTGTGTC+AGG - Chr4:87601939-87601958 MsG0480023609.01.T01:CDS 40.0%
!! ATGACTTTTGGTAGCAGACA+TGG - Chr4:87604056-87604075 MsG0480023609.01.T01:exon 40.0%
!! CTTTGATGGATTGTGGATTC+TGG - Chr4:87603961-87603980 MsG0480023609.01.T01:intron 40.0%
!! TGAAGCATTGACACAAACAC+TGG + Chr4:87600024-87600043 None:intergenic 40.0%
!!! CTGCTTTGGTTTTTGTCTCT+TGG + Chr4:87604498-87604517 None:intergenic 40.0%
!!! GAAAGAAGTTTTTTCGGGAG+TGG + Chr4:87602954-87602973 None:intergenic 40.0%
AAAATGGTCGTCCCAGCTTA+AGG - Chr4:87601850-87601869 MsG0480023609.01.T01:intron 45.0%
AACGGCCGCCATAAAATTCT+AGG + Chr4:87601704-87601723 None:intergenic 45.0%
ACATGTGTGAGTGTCAGTTG+CGG + Chr4:87599950-87599969 None:intergenic 45.0%
ACTTCGATATCCCAGCCATT+AGG + Chr4:87600402-87600421 None:intergenic 45.0%
AGAGCAACCATCATTCGAGA+TGG + Chr4:87604745-87604764 None:intergenic 45.0%
ATGCATTCTCCAAGCAAGGA+CGG - Chr4:87601479-87601498 MsG0480023609.01.T01:intron 45.0%
ATGGTTGCTCTTGATACCTC+AGG - Chr4:87604754-87604773 MsG0480023609.01.T01:five_prime_UTR 45.0%
ATGTGTAGCCATGTAGGTGT+TGG + Chr4:87599925-87599944 None:intergenic 45.0%
CAAGCATTCTCCAAACAAGG+AGG - Chr4:87601311-87601330 MsG0480023609.01.T01:intron 45.0%
CATGCATTCTCCAAACAAGG+GGG - Chr4:87601439-87601458 MsG0480023609.01.T01:intron 45.0%
CATTCTCCAAACAAGGAGGA+GGG - Chr4:87601315-87601334 MsG0480023609.01.T01:intron 45.0%
CATTTCTCTTCCTCCTTGCT+TGG + Chr4:87601413-87601432 None:intergenic 45.0%
CTGTCCTCTCTCTTCCAAAA+AGG - Chr4:87602354-87602373 MsG0480023609.01.T01:intron 45.0%
GAAGTTAGAACCCGACAAAG+TGG - Chr4:87600417-87600436 MsG0480023609.01.T01:intron 45.0%
GAATGTGCCATCTCGAATGA+TGG - Chr4:87604735-87604754 MsG0480023609.01.T01:five_prime_UTR 45.0%
GGCTATGGGATCTGCATATA+AGG - Chr4:87600443-87600462 MsG0480023609.01.T01:intron 45.0%
GTCTTGTACTAACGTACTGG+AGG + Chr4:87603044-87603063 None:intergenic 45.0%
TAACCAGCATTCTCCAAGCA+AGG - Chr4:87601397-87601416 MsG0480023609.01.T01:intron 45.0%
TAAGCAGCATTCTCCAAGCA+AGG - Chr4:87601352-87601371 MsG0480023609.01.T01:intron 45.0%
TAGTGAGTTGCAAATGCCTG+TGG - Chr4:87602421-87602440 MsG0480023609.01.T01:intron 45.0%
TCCTCTCTCTTCCAAAAAGG+AGG - Chr4:87602357-87602376 MsG0480023609.01.T01:intron 45.0%
TGAATGGTTGCCTAATGGCT+GGG - Chr4:87600389-87600408 MsG0480023609.01.T01:intron 45.0%
TGCCTTTCTCACTTGTCACT+TGG - Chr4:87600320-87600339 MsG0480023609.01.T01:intron 45.0%
TGGCCGATGTTAACAACTCA+AGG - Chr4:87604698-87604717 MsG0480023609.01.T01:five_prime_UTR 45.0%
TGGTTGCTCTTGATACCTCA+GGG - Chr4:87604755-87604774 MsG0480023609.01.T01:five_prime_UTR 45.0%
TGTTTCTCTTCCCCCTTGTT+TGG + Chr4:87601452-87601471 None:intergenic 45.0%
! AAGATTCGGAAGCACAGAAG+TGG - Chr4:87602274-87602293 MsG0480023609.01.T01:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + Chr4:87604247-87604266 None:intergenic 45.0%
! ATAGAGGTGCACACATTGCT+TGG + Chr4:87601529-87601548 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + Chr4:87604248-87604267 None:intergenic 45.0%
! TGGTGTTGAACCTGTCAAGT+TGG - Chr4:87604861-87604880 MsG0480023609.01.T01:five_prime_UTR 45.0%
! TTTGCTATGCTCTAGGTTGC+AGG - Chr4:87602202-87602221 MsG0480023609.01.T01:intron 45.0%
!! ACCTCCTTTTTGGAAGAGAG+AGG + Chr4:87602361-87602380 None:intergenic 45.0%
!! CATTTTCAAGGATTCCCCTG+AGG + Chr4:87604773-87604792 None:intergenic 45.0%
!!! ATGTGAGCCATCGGTTTTCA+CGG - Chr4:87604830-87604849 MsG0480023609.01.T01:five_prime_UTR 45.0%
!!! GTTTTTTCGGGAGTGGATGT+AGG + Chr4:87602947-87602966 None:intergenic 45.0%
!!! TATAAATGAAATATATTTTA+GGG - Chr4:87604555-87604574 MsG0480023609.01.T01:five_prime_UTR 5.0%
AAGCTGACGAACGTCCTGAA+TGG - Chr4:87600373-87600392 MsG0480023609.01.T01:intron 50.0%
AGGCGAGAATTCCATTGTGG+AGG - Chr4:87602222-87602241 MsG0480023609.01.T01:intron 50.0%
AGGTGGTAGATCCTCCACAA+TGG + Chr4:87602236-87602255 None:intergenic 50.0%
ATTGTGGAGGATCTACCACC+TGG - Chr4:87602235-87602254 MsG0480023609.01.T01:intron 50.0%
CAGCATGCATTCTCCAAGCA+AGG - Chr4:87601475-87601494 MsG0480023609.01.T01:intron 50.0%
CAGCCATTAGGCAACCATTC+AGG + Chr4:87600390-87600409 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - Chr4:87604246-87604265 MsG0480023609.01.T01:five_prime_UTR 50.0%
CGTCCTGAATGGTTGCCTAA+TGG - Chr4:87600384-87600403 MsG0480023609.01.T01:intron 50.0%
CTGAATGGTTGCCTAATGGC+TGG - Chr4:87600388-87600407 MsG0480023609.01.T01:intron 50.0%
GCATTCTCCAAACAAGGAGG+AGG - Chr4:87601314-87601333 MsG0480023609.01.T01:intron 50.0%
GGTTGCTCTTGATACCTCAG+GGG - Chr4:87604756-87604775 MsG0480023609.01.T01:five_prime_UTR 50.0%
GTGCACACATTGCTTGGAGA+GGG + Chr4:87601523-87601542 None:intergenic 50.0%
GTGTTTCCCTCCTCCTTGTT+TGG + Chr4:87601324-87601343 None:intergenic 50.0%
GTTGTCCTAAATCGGTGAGC+TGG - Chr4:87600828-87600847 MsG0480023609.01.T01:intron 50.0%
TAGAACCCGACAAAGTGGTC+CGG - Chr4:87600422-87600441 MsG0480023609.01.T01:intron 50.0%
TAGAAGGGGAGAGGAGTCTA+TGG - Chr4:87603080-87603099 MsG0480023609.01.T01:intron 50.0%
TGAGCAAGTTAGAAGGGGAG+AGG - Chr4:87603071-87603090 MsG0480023609.01.T01:intron 50.0%
TGCAGGCGAGAATTCCATTG+TGG - Chr4:87602219-87602238 MsG0480023609.01.T01:intron 50.0%
TGCATGGGTGTAGACTGCTT+TGG + Chr4:87604512-87604531 None:intergenic 50.0%
TTAGAACTGTGTCTGGCACG+AGG - Chr4:87601668-87601687 MsG0480023609.01.T01:CDS 50.0%
! ATACTTGGGTTGTGCGCTGT+TGG - Chr4:87602002-87602021 MsG0480023609.01.T01:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + Chr4:87604249-87604268 None:intergenic 50.0%
! GGTTTTTGTCTCTTGGCAGC+AGG + Chr4:87604491-87604510 None:intergenic 50.0%
!! TGGGCATTTTTGGGCTACCA+AGG + Chr4:87603724-87603743 None:intergenic 50.0%
CATAGCCGGACCACTTTGTC+GGG + Chr4:87600430-87600449 None:intergenic 55.0%
CCAGCATTCTCCAAGCAAGG+AGG - Chr4:87601400-87601419 MsG0480023609.01.T01:intron 55.0%
CCAGTCTCCGTGAAAACCGA+TGG + Chr4:87604840-87604859 None:intergenic 55.0%
CCATAGCCGGACCACTTTGT+CGG + Chr4:87600431-87600450 None:intergenic 55.0%
CCTCCTTGCTTGGAGAATGC+TGG + Chr4:87601358-87601377 None:intergenic 55.0%
CGACAAAGTGGTCCGGCTAT+GGG - Chr4:87600429-87600448 MsG0480023609.01.T01:intron 55.0%
CTGCCCCACTTAGTGGGATA+AGG - Chr4:87604241-87604260 MsG0480023609.01.T01:five_prime_UTR 55.0%
GCAGCATTCTCCAAGCAAGG+AGG - Chr4:87601355-87601374 MsG0480023609.01.T01:intron 55.0%
GCATTCTCTCCGTCCTTGCT+TGG + Chr4:87601491-87601510 None:intergenic 55.0%
GCGGACATGTGTAGCCATGT+AGG + Chr4:87599931-87599950 None:intergenic 55.0%
GGACGTTCGTCAGCTTTCTC+CGG + Chr4:87600369-87600388 None:intergenic 55.0%
GGTGCACACATTGCTTGGAG+AGG + Chr4:87601524-87601543 None:intergenic 55.0%
TGGAGGATCTACCACCTGGA+TGG - Chr4:87602239-87602258 MsG0480023609.01.T01:intron 55.0%
TGTCTCTTGGCAGCAGGTGA+TGG + Chr4:87604485-87604504 None:intergenic 55.0%
! ATCTCTGGGGGACTACAAGC+TGG + Chr4:87600593-87600612 None:intergenic 55.0%
!!! CCATCGGTTTTCACGGAGAC+TGG - Chr4:87604837-87604856 MsG0480023609.01.T01:five_prime_UTR 55.0%
CCGACAAAGTGGTCCGGCTA+TGG - Chr4:87600428-87600447 MsG0480023609.01.T01:intron 60.0%
GGGGCAGTCCAACACCTACA+TGG - Chr4:87599914-87599933 MsG0480023609.01.T01:intron 60.0%
! CGGTTTTCACGGAGACTGGC+TGG - Chr4:87604841-87604860 MsG0480023609.01.T01:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 87599303 87604933 87599303 ID=MsG0480023609.01;Name=MsG0480023609.01
Chr4 mRNA 87599303 87604933 87599303 ID=MsG0480023609.01.T01;Parent=MsG0480023609.01;Name=MsG0480023609.01.T01;_AED=0.37;_eAED=0.37;_QI=682|0.85|1|1|0.71|0.5|8|0|246
Chr4 exon 87599303 87599565 87599303 ID=MsG0480023609.01.T01:exon:1886;Parent=MsG0480023609.01.T01
Chr4 exon 87599691 87599754 87599691 ID=MsG0480023609.01.T01:exon:1885;Parent=MsG0480023609.01.T01
Chr4 exon 87601578 87601712 87601578 ID=MsG0480023609.01.T01:exon:1884;Parent=MsG0480023609.01.T01
Chr4 exon 87601924 87602019 87601924 ID=MsG0480023609.01.T01:exon:1883;Parent=MsG0480023609.01.T01
Chr4 exon 87603772 87603873 87603772 ID=MsG0480023609.01.T01:exon:1882;Parent=MsG0480023609.01.T01
Chr4 exon 87603978 87604347 87603978 ID=MsG0480023609.01.T01:exon:1881;Parent=MsG0480023609.01.T01
Chr4 exon 87604541 87604933 87604541 ID=MsG0480023609.01.T01:exon:1880;Parent=MsG0480023609.01.T01
Chr4 five_prime_UTR 87604541 87604933 87604541 ID=MsG0480023609.01.T01:five_prime_utr;Parent=MsG0480023609.01.T01
Chr4 five_prime_UTR 87604059 87604347 87604059 ID=MsG0480023609.01.T01:five_prime_utr;Parent=MsG0480023609.01.T01
Chr4 CDS 87603978 87604058 87603978 ID=MsG0480023609.01.T01:cds;Parent=MsG0480023609.01.T01
Chr4 CDS 87603772 87603873 87603772 ID=MsG0480023609.01.T01:cds;Parent=MsG0480023609.01.T01
Chr4 CDS 87601924 87602019 87601924 ID=MsG0480023609.01.T01:cds;Parent=MsG0480023609.01.T01
Chr4 CDS 87601578 87601712 87601578 ID=MsG0480023609.01.T01:cds;Parent=MsG0480023609.01.T01
Chr4 CDS 87599691 87599754 87599691 ID=MsG0480023609.01.T01:cds;Parent=MsG0480023609.01.T01
Chr4 CDS 87599303 87599565 87599303 ID=MsG0480023609.01.T01:cds;Parent=MsG0480023609.01.T01
Gene Sequence

>MsG0480023609.01.T01

ATGGGAAAACCAAACGTTAAAAAATCTGGAGGAACCAACAAACGGATTGACAATGACACAAAACGCAACTCTAAACAACAAACTCCGGAGAAAGCTGACGAACGTCCTGAATGGTTGCCTAATGGCTGGGATATCGAAGTTAGAACCCGACAAAGTGGTCCGGCTATGGGATCTGCATATAAGGTTGCAGGCGAGAATTCCATTGTGGAGGATCTACCACCTGGATGGATTAAAGAAGTAAAGATTCGGAAGCACAGAAGTGGCATAAAGAAAGATTGGTTTTATATTGATCCAGTGAGTGGATATGTATTCCATTCCAAGAAGGATGTACAACGTTTTCTCAAATCTGGAGATATAGCCAAGTGTGCCATTAAACCAAGTAGAAGACAATATCAAGATGAAGACAACTCAACTCCATCACCTGCTGCCAAGAGACAAAAACCAAAGCAGTCTACACCCATGCAAAAGATTTTTGTTGCCAAAGAACCAGTTGAAAGCTTAGAATTGGCCGATGTTAACAACTCAAGGAAAGGGCAAGATGTGAATGTGCCATCTCGAATGATGGTTGCTCTTGATACCTCAGGGGAATCCTTGAAAATGAATCACAGTAACCATAGCATATCCAAAAATGATGTCAATGTGAGCCATCGGTTTTCACGGAGACTGGCTGGTGTTGAACCTGTCAAGTTGGTTGACAATGTGATTAATGATGAGGCTCTTCTAGTTCCAAAAGAAACTTGA
Protein sequence

>MsG0480023609.01.T01

MGKPNVKKSGGTNKRIDNDTKRNSKQQTPEKADERPEWLPNGWDIEVRTRQSGPAMGSAYKVAGENSIVEDLPPGWIKEVKIRKHRSGIKKDWFYIDPVSGYVFHSKKDVQRFLKSGDIAKCAIKPSRRQYQDEDNSTPSPAAKRQKPKQSTPMQKIFVAKEPVESLELADVNNSRKGQDVNVPSRMMVALDTSGESLKMNHSNHSISKNDVNVSHRFSRRLAGVEPVKLVDNVINDEALLVPKET*