AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017700.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017700.01.T01 MTR_3g110600 92.857 140 3 1 1 140 1 133 1.13e-90 259
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017700.01.T01 AT1G10030 75.735 136 26 1 1 136 1 129 3.08e-70 207

Find 43 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGCTTCGAGCGGACTTTC+AGG 0.202122 3:+99746033 None:intergenic
TTGCCATTGTGTGATAAATT+AGG 0.225059 3:+99747147 None:intergenic
GGTTCGGTTTCTTCGACATT+TGG 0.273602 3:-99748967 MsG0380017700.01.T01:CDS
TGCTAATGCTTTCTATTAGA+AGG 0.300218 3:+99746014 None:intergenic
TACTCTTGAAACGAAGTAAA+AGG 0.327481 3:+99745894 None:intergenic
GTTCGGTTTCTTCGACATTT+GGG 0.339846 3:-99748966 MsG0380017700.01.T01:CDS
ACCACTGTCGGCATATTTGC+AGG 0.347573 3:-99747113 MsG0380017700.01.T01:intron
TAACAGGAACATCAATAGTA+TGG 0.354036 3:-99746079 MsG0380017700.01.T01:intron
GAAGTTCATGGACGCACATT+TGG 0.356033 3:-99747293 MsG0380017700.01.T01:CDS
TAAACCCATTGCATCCAAAA+AGG 0.365288 3:+99745803 None:intergenic
TGTGTGATAAATTAGGTATT+CGG 0.367720 3:+99747154 None:intergenic
GTACTATATCAGAATGTGTT+AGG 0.389773 3:-99745954 MsG0380017700.01.T01:three_prime_UTR
TTGTCATTCATCTACGCGTT+TGG 0.412813 3:-99747188 MsG0380017700.01.T01:CDS
TTAGCATTAGCAAGAGTTAT+GGG 0.416524 3:-99745997 MsG0380017700.01.T01:exon
GGTAAAGAGGCTTGTTATCA+AGG 0.423575 3:+99747222 None:intergenic
ATTAGCATTAGCAAGAGTTA+TGG 0.424304 3:-99745998 MsG0380017700.01.T01:exon
ATGGACGCACATTTGGAACT+TGG 0.438404 3:-99747286 MsG0380017700.01.T01:CDS
CGATTAGCTTCCGTATGGTT+CGG 0.442077 3:-99748983 MsG0380017700.01.T01:CDS
GGATGGTGGCTGATAGCGGT+TGG 0.484151 3:-99749013 MsG0380017700.01.T01:CDS
TTGCTGGTTTACAAAATTGA+CGG 0.485354 3:-99745836 MsG0380017700.01.T01:three_prime_UTR
GTAAGTAAAATGAAGGCGTT+GGG 0.495918 3:-99749034 None:intergenic
AGTAAGTAAAATGAAGGCGT+TGG 0.498111 3:-99749035 None:intergenic
GTTGCAGTGAGTGAAGTTCA+TGG 0.501282 3:-99747305 MsG0380017700.01.T01:CDS
GATGGTGGCTGATAGCGGTT+GGG 0.502212 3:-99749012 MsG0380017700.01.T01:CDS
TGATAACAAGCCTCTTTACC+TGG 0.524194 3:-99747219 MsG0380017700.01.T01:CDS
CGCTTCGATTAGCTTCCGTA+TGG 0.534995 3:-99748988 MsG0380017700.01.T01:CDS
GTCGAAGAAACCGAACCATA+CGG 0.561429 3:+99748973 None:intergenic
ATTTCGAATCTCACCACTGT+CGG 0.572325 3:-99747125 MsG0380017700.01.T01:CDS
GAGTTACACAGCATTAAGAA+TGG 0.576548 3:-99745745 MsG0380017700.01.T01:three_prime_UTR
GTTGGGATGGTGGCTGATAG+CGG 0.576561 3:-99749017 MsG0380017700.01.T01:CDS
TTCTATTAGAAGGCTTCGAG+CGG 0.577253 3:+99746024 None:intergenic
TAGTATGGATGCTATTGCAA+TGG 0.580419 3:-99746064 MsG0380017700.01.T01:CDS
TTATTCATATAAGCATGTCA+TGG 0.589101 3:-99745717 MsG0380017700.01.T01:three_prime_UTR
ACAGATATAGCAGAGGGTGC+AGG 0.601494 3:+99747253 None:intergenic
GTAAAATGAAGGCGTTGGGA+TGG 0.606620 3:-99749030 None:intergenic
ACTGGTAGTGTTAGAGAAGA+CGG 0.610748 3:+99748931 None:intergenic
AAATGAAGGCGTTGGGATGG+TGG 0.619208 3:-99749027 MsG0380017700.01.T01:CDS
TTACACAGCATTAAGAATGG+AGG 0.645349 3:-99745742 MsG0380017700.01.T01:three_prime_UTR
ATACCTAATTTATCACACAA+TGG 0.654460 3:-99747150 MsG0380017700.01.T01:CDS
GAATGCACAGATATAGCAGA+GGG 0.668300 3:+99747247 None:intergenic
TGAAACGAAGTAAAAGGACA+AGG 0.669253 3:+99745900 None:intergenic
ACCTGCAAATATGCCGACAG+TGG 0.670071 3:+99747112 None:intergenic
TGAATGCACAGATATAGCAG+AGG 0.703979 3:+99747246 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATATATACTTAC+TGG + Chr3:99745794-99745813 None:intergenic 10.0%
!! TATTCTAATATTCAAATTAT+GGG - Chr3:99747354-99747373 MsG0380017700.01.T01:intron 10.0%
!! TTATTCTAATATTCAAATTA+TGG - Chr3:99747353-99747372 MsG0380017700.01.T01:intron 10.0%
!!! GTTTAAAAAAAAATAGATTT+TGG - Chr3:99748167-99748186 MsG0380017700.01.T01:intron 10.0%
!!! TCTATTTTTTTTTAAACATA+AGG + Chr3:99748164-99748183 None:intergenic 10.0%
!!! TCTTTTTAGTTAATTTAATT+GGG + Chr3:99748426-99748445 None:intergenic 10.0%
!!! TTCTTTTGTTTTAATTTATT+CGG + Chr3:99747124-99747143 None:intergenic 10.0%
!!! TTCTTTTTAGTTAATTTAAT+TGG + Chr3:99748427-99748446 None:intergenic 10.0%
!! ACATTGTTTATATAATAGAT+GGG - Chr3:99746337-99746356 MsG0380017700.01.T01:intron 15.0%
!! TAAAGTAACATAAAAACATT+GGG - Chr3:99746505-99746524 MsG0380017700.01.T01:intron 15.0%
!! TACATTGTTTATATAATAGA+TGG - Chr3:99746336-99746355 MsG0380017700.01.T01:intron 15.0%
!! TTAAAGTAACATAAAAACAT+TGG - Chr3:99746504-99746523 MsG0380017700.01.T01:intron 15.0%
!!! AAATGATTTTTTGAACAAAA+TGG - Chr3:99748227-99748246 MsG0380017700.01.T01:intron 15.0%
!!! CTTTTTAGTTAATTTAATTG+GGG + Chr3:99748425-99748444 None:intergenic 15.0%
!!! TCAAAATAAAAGTCATTTTT+GGG - Chr3:99748929-99748948 MsG0380017700.01.T01:CDS 15.0%
!!! TTCAAAATAAAAGTCATTTT+TGG - Chr3:99748928-99748947 MsG0380017700.01.T01:intron 15.0%
!!! TTTTTAGTTAATTTAATTGG+GGG + Chr3:99748424-99748443 None:intergenic 15.0%
!! AATCTAGTGTTTATAATAAC+AGG - Chr3:99748609-99748628 MsG0380017700.01.T01:intron 20.0%
!! TAAATAATGCTGAAATAAGA+GGG + Chr3:99748551-99748570 None:intergenic 20.0%
!! TCAAAAAAATCCAAAACAAA+CGG - Chr3:99748324-99748343 MsG0380017700.01.T01:intron 20.0%
!!! AGTAATTGGAAATTTTGAAT+CGG - Chr3:99747038-99747057 MsG0380017700.01.T01:intron 20.0%
!!! TTTAAGCACATTGATTTTTA+TGG - Chr3:99747814-99747833 MsG0380017700.01.T01:intron 20.0%
!!! TTTTGTTATAAGTAATGCTA+TGG - Chr3:99747181-99747200 MsG0380017700.01.T01:CDS 20.0%
! AACACAGAATATTGAATCAT+TGG + Chr3:99747706-99747725 None:intergenic 25.0%
! AATGAATCAGTGAAAGTAAT+TGG - Chr3:99747024-99747043 MsG0380017700.01.T01:intron 25.0%
! AGTAAGTTCCAGAATTATAA+TGG + Chr3:99748510-99748529 None:intergenic 25.0%
! ATACCTAATTTATCACACAA+TGG - Chr3:99747554-99747573 MsG0380017700.01.T01:intron 25.0%
! ATGCTATGTAATAGACAAAT+TGG + Chr3:99747644-99747663 None:intergenic 25.0%
! ATTTCAGCATTATTTACTCA+TGG - Chr3:99748555-99748574 MsG0380017700.01.T01:intron 25.0%
! CAAAAAAATCCAAAACAAAC+GGG - Chr3:99748325-99748344 MsG0380017700.01.T01:intron 25.0%
! CAAATTACAATCAAATTCAG+AGG + Chr3:99747870-99747889 None:intergenic 25.0%
! GTAAATAATGCTGAAATAAG+AGG + Chr3:99748552-99748571 None:intergenic 25.0%
! GTAAGTTCCAGAATTATAAT+GGG + Chr3:99748509-99748528 None:intergenic 25.0%
! TAATGTTAGTGAATCCAAAT+GGG + Chr3:99747780-99747799 None:intergenic 25.0%
! TAATTAACTTCTCTCTTTCT+TGG - Chr3:99745818-99745837 MsG0380017700.01.T01:three_prime_UTR 25.0%
! TAGTAAATAATTCTCACAAC+AGG + Chr3:99748388-99748407 None:intergenic 25.0%
! TATGTAATAGACAAATTGGT+GGG + Chr3:99747640-99747659 None:intergenic 25.0%
! TCACTCTATCATTAATGATT+TGG + Chr3:99747240-99747259 None:intergenic 25.0%
! TGCTTTCAAATATGGTTAAA+TGG - Chr3:99745990-99746009 MsG0380017700.01.T01:three_prime_UTR 25.0%
! TGTGTGATAAATTAGGTATT+CGG + Chr3:99747553-99747572 None:intergenic 25.0%
! TTAATGTTAGTGAATCCAAA+TGG + Chr3:99747781-99747800 None:intergenic 25.0%
! TTAGTTAGTTAGTTAGTTAG+TGG - Chr3:99746065-99746084 MsG0380017700.01.T01:CDS 25.0%
! TTATTCATATAAGCATGTCA+TGG - Chr3:99748987-99749006 MsG0380017700.01.T01:CDS 25.0%
! TTCATTCATTCACGAATTAA+TGG - Chr3:99745859-99745878 MsG0380017700.01.T01:three_prime_UTR 25.0%
!! AGAAATAGCTTTTCATTTTG+AGG - Chr3:99748200-99748219 MsG0380017700.01.T01:intron 25.0%
!! TTGATGTTTAAAATCGTGTT+TGG + Chr3:99747918-99747937 None:intergenic 25.0%
!! TTTGCAGAAATTATTTCTCT+AGG - Chr3:99746956-99746975 MsG0380017700.01.T01:intron 25.0%
!!! AATTACTTTCACTGATTCAT+TGG + Chr3:99747025-99747044 None:intergenic 25.0%
!!! ATTTTTATGGTTTGTGTGTT+TGG - Chr3:99747827-99747846 MsG0380017700.01.T01:intron 25.0%
AATCCATTTCCAATAAATGC+AGG + Chr3:99746288-99746307 None:intergenic 30.0%
AATTGTGATATGATCAGGTT+GGG - Chr3:99746630-99746649 MsG0380017700.01.T01:intron 30.0%
ACTTCCATCAAGAGATAAAA+GGG + Chr3:99747066-99747085 None:intergenic 30.0%
AGCAATATTCCATTTCACAA+TGG - Chr3:99747271-99747290 MsG0380017700.01.T01:CDS 30.0%
ATCCATTTCCAATAAATGCA+GGG + Chr3:99746287-99746306 None:intergenic 30.0%
ATCTCATACAGTACATACAT+TGG + Chr3:99745948-99745967 None:intergenic 30.0%
ATTAGCATTAGCAAGAGTTA+TGG - Chr3:99748706-99748725 MsG0380017700.01.T01:intron 30.0%
ATTATTCAGACCATGAAAGA+TGG + Chr3:99747151-99747170 None:intergenic 30.0%
ATTTGAAAGCAACAGAACAT+TGG + Chr3:99745981-99746000 None:intergenic 30.0%
CATTATTCAAACCCAACTAT+GGG - Chr3:99747984-99748003 MsG0380017700.01.T01:intron 30.0%
CTATGTAATAGACAAATTGG+TGG + Chr3:99747641-99747660 None:intergenic 30.0%
GCAAACTAACTTCAATATCA+AGG - Chr3:99746527-99746546 MsG0380017700.01.T01:intron 30.0%
GCATTATTTACTCATGGATA+CGG - Chr3:99748561-99748580 MsG0380017700.01.T01:intron 30.0%
GTACTATATCAGAATGTGTT+AGG - Chr3:99748750-99748769 MsG0380017700.01.T01:intron 30.0%
TAACAGGAACATCAATAGTA+TGG - Chr3:99748625-99748644 MsG0380017700.01.T01:intron 30.0%
TACAGTAGAGGACATATATT+TGG + Chr3:99748476-99748495 None:intergenic 30.0%
TACTCTTGAAACGAAGTAAA+AGG + Chr3:99748813-99748832 None:intergenic 30.0%
TACTTCCATCAAGAGATAAA+AGG + Chr3:99747067-99747086 None:intergenic 30.0%
TCATTATTCAAACCCAACTA+TGG - Chr3:99747983-99748002 MsG0380017700.01.T01:intron 30.0%
TCTAGGAAAAAAATCGACAT+TGG + Chr3:99746822-99746841 None:intergenic 30.0%
TGCTAATGCTTTCTATTAGA+AGG + Chr3:99748693-99748712 None:intergenic 30.0%
TGGTGAAAAAAACAGTGATT+TGG + Chr3:99747686-99747705 None:intergenic 30.0%
TTAGCATTAGCAAGAGTTAT+GGG - Chr3:99748707-99748726 MsG0380017700.01.T01:intron 30.0%
TTATTCAGACCATGAAAGAT+GGG + Chr3:99747150-99747169 None:intergenic 30.0%
TTGCCATTGTGTGATAAATT+AGG + Chr3:99747560-99747579 None:intergenic 30.0%
TTTGAAAGCAACAGAACATT+GGG + Chr3:99745980-99745999 None:intergenic 30.0%
! ATGTTTAAAATCGTGTTTGG+AGG + Chr3:99747915-99747934 None:intergenic 30.0%
! CAATTTTGTAAACCAGCAAT+GGG + Chr3:99748867-99748886 None:intergenic 30.0%
! TCAATTTTGTAAACCAGCAA+TGG + Chr3:99748868-99748887 None:intergenic 30.0%
! TTTTATCTCTTGATGGAAGT+AGG - Chr3:99747066-99747085 MsG0380017700.01.T01:intron 30.0%
!! TGTTCTGTTGCTTTCAAATA+TGG - Chr3:99745982-99746001 MsG0380017700.01.T01:three_prime_UTR 30.0%
!! TTGCTGGTTTACAAAATTGA+CGG - Chr3:99748868-99748887 MsG0380017700.01.T01:intron 30.0%
!!! ATTTTTTTCCTAGAACTGTC+AGG - Chr3:99746828-99746847 MsG0380017700.01.T01:intron 30.0%
AAAAAAATCGACATTGGTGC+AGG + Chr3:99746816-99746835 None:intergenic 35.0%
AAAAAAGTTGCCAGGTAAAG+AGG + Chr3:99747498-99747517 None:intergenic 35.0%
ACCAAGTCTAAAAGTTCACT+TGG + Chr3:99747756-99747775 None:intergenic 35.0%
CAATTGTGATATGATCAGGT+TGG - Chr3:99746629-99746648 MsG0380017700.01.T01:intron 35.0%
CACCTTATGTCAAGTTAAGT+TGG + Chr3:99746102-99746121 None:intergenic 35.0%
GAGTTACACAGCATTAAGAA+TGG - Chr3:99748959-99748978 MsG0380017700.01.T01:CDS 35.0%
GTAGTAGAAAATATCCACTG+CGG - Chr3:99746652-99746671 MsG0380017700.01.T01:intron 35.0%
GTTATCACGGATCATTTAGT+AGG + Chr3:99746757-99746776 None:intergenic 35.0%
TAAACCCATTGCATCCAAAA+AGG + Chr3:99748904-99748923 None:intergenic 35.0%
TAACCCTACAACACAAAACT+GGG + Chr3:99746909-99746928 None:intergenic 35.0%
TAACCCTACAACAGAAAACT+GGG + Chr3:99746859-99746878 None:intergenic 35.0%
TAGTATGGATGCTATTGCAA+TGG - Chr3:99748640-99748659 MsG0380017700.01.T01:intron 35.0%
TGAAACGAAGTAAAAGGACA+AGG + Chr3:99748807-99748826 None:intergenic 35.0%
TGAATGACAAAAAAGTTGCC+AGG + Chr3:99747506-99747525 None:intergenic 35.0%
TGATCATATCACAATTGAGC+CGG + Chr3:99746626-99746645 None:intergenic 35.0%
TGTAACATCCATTGCTTGTA+AGG + Chr3:99746396-99746415 None:intergenic 35.0%
TGTAAGAACAAAGCTACTCA+TGG + Chr3:99746479-99746498 None:intergenic 35.0%
TTACAAGCAATGGATGTTAC+AGG - Chr3:99746395-99746414 MsG0380017700.01.T01:intron 35.0%
TTACACAGCATTAAGAATGG+AGG - Chr3:99748962-99748981 MsG0380017700.01.T01:CDS 35.0%
TTGACTTCACTTGTATTGCT+AGG - Chr3:99746125-99746144 MsG0380017700.01.T01:intron 35.0%
TTGTCAACTAGATAACTGCA+TGG + Chr3:99746311-99746330 None:intergenic 35.0%
TTTCCAGCCCATTATAATTC+TGG - Chr3:99748499-99748518 MsG0380017700.01.T01:intron 35.0%
! CAACTTAACTTGACATAAGG+TGG - Chr3:99746100-99746119 MsG0380017700.01.T01:intron 35.0%
! GTTTCCTTTTTGGATGCAAT+GGG - Chr3:99748897-99748916 MsG0380017700.01.T01:intron 35.0%
! TGCCAACTTAACTTGACATA+AGG - Chr3:99746097-99746116 MsG0380017700.01.T01:intron 35.0%
! TGTTTCCTTTTTGGATGCAA+TGG - Chr3:99748896-99748915 MsG0380017700.01.T01:intron 35.0%
!! CAACTCACAAAGAAAGTATC+AGG + Chr3:99746717-99746736 None:intergenic 35.0%
!!! TGATTTGGTTGATTTTGTCG+TGG + Chr3:99747225-99747244 None:intergenic 35.0%
AAACAAACGCACCCATAGTT+GGG + Chr3:99747998-99748017 None:intergenic 40.0%
AAAGATCAATGCCGCATTGT+TGG + Chr3:99746046-99746065 None:intergenic 40.0%
AAATAGACAGTCTTCCTTGC+AGG - Chr3:99746578-99746597 MsG0380017700.01.T01:intron 40.0%
AAGATCAATGCCGCATTGTT+GGG + Chr3:99746045-99746064 None:intergenic 40.0%
ATATGCACAACAGGCAAACA+AGG + Chr3:99746169-99746188 None:intergenic 40.0%
ATCCTGAAGATATGCACAAC+AGG + Chr3:99746178-99746197 None:intergenic 40.0%
ATTTCGAATCTCACCACTGT+CGG - Chr3:99747579-99747598 MsG0380017700.01.T01:intron 40.0%
CAATGGATGTTACAGGTTCT+GGG - Chr3:99746402-99746421 MsG0380017700.01.T01:intron 40.0%
CATTTCACAATGGCTTAGCA+AGG - Chr3:99747281-99747300 MsG0380017700.01.T01:CDS 40.0%
CCATTGCTTGTAAGGATTCT+GGG + Chr3:99746388-99746407 None:intergenic 40.0%
CTAACCCTACAACACAAAAC+TGG + Chr3:99746910-99746929 None:intergenic 40.0%
CTAACCCTACAACAGAAAAC+TGG + Chr3:99746860-99746879 None:intergenic 40.0%
CTTGCTAAGCCATTGTGAAA+TGG + Chr3:99747283-99747302 None:intergenic 40.0%
GAATGCACAGATATAGCAGA+GGG + Chr3:99747460-99747479 None:intergenic 40.0%
GACAGTAGAGTTCTATGTCA+TGG + Chr3:99746439-99746458 None:intergenic 40.0%
GGATCATTTAGTAGGCTGTA+TGG + Chr3:99746749-99746768 None:intergenic 40.0%
GGCTCAATTGTGATATGATC+AGG - Chr3:99746625-99746644 MsG0380017700.01.T01:intron 40.0%
GTGTAGAGATGTAATCACCA+TGG - Chr3:99746261-99746280 MsG0380017700.01.T01:intron 40.0%
GTTAGCAATATCAGAGGTCA+GGG - Chr3:99746875-99746894 MsG0380017700.01.T01:intron 40.0%
GTTCGGTTTCTTCGACATTT+GGG - Chr3:99745738-99745757 MsG0380017700.01.T01:three_prime_UTR 40.0%
TAGAGTTCTATGTCATGGCT+AGG + Chr3:99746434-99746453 None:intergenic 40.0%
TATTCGGTCTTTGCGTATAC+AGG + Chr3:99747108-99747127 None:intergenic 40.0%
TCCATTGCTTGTAAGGATTC+TGG + Chr3:99746389-99746408 None:intergenic 40.0%
TGAATGCACAGATATAGCAG+AGG + Chr3:99747461-99747480 None:intergenic 40.0%
TGATAACAAGCCTCTTTACC+TGG - Chr3:99747485-99747504 MsG0380017700.01.T01:intron 40.0%
TTAATGTTCCCCCAACAATG+CGG - Chr3:99746032-99746051 MsG0380017700.01.T01:CDS 40.0%
TTCTATTAGAAGGCTTCGAG+CGG + Chr3:99748683-99748702 None:intergenic 40.0%
TTGTCATTCATCTACGCGTT+TGG - Chr3:99747516-99747535 MsG0380017700.01.T01:intron 40.0%
! AAACTTTTGCTACCCATTGC+TGG - Chr3:99748852-99748871 MsG0380017700.01.T01:intron 40.0%
! ACGGCATTGTGTTTCCTTTT+TGG - Chr3:99748887-99748906 MsG0380017700.01.T01:intron 40.0%
! ACTGGTAGTGTTAGAGAAGA+CGG + Chr3:99745776-99745795 None:intergenic 40.0%
! GATCCCAGTTTTCTGTTGTA+GGG - Chr3:99746853-99746872 MsG0380017700.01.T01:intron 40.0%
! GCCAAGTGAACTTTTAGACT+TGG - Chr3:99747752-99747771 MsG0380017700.01.T01:intron 40.0%
! GGAACCCTTTTATCTCTTGA+TGG - Chr3:99747059-99747078 MsG0380017700.01.T01:intron 40.0%
! TGTAGGGTTAGCAATATCAG+AGG - Chr3:99746869-99746888 MsG0380017700.01.T01:intron 40.0%
! TTTTTCCTAGAACTGTCAGG+TGG - Chr3:99746831-99746850 MsG0380017700.01.T01:intron 40.0%
!! AAAGAAGCACCCATCTTTCA+TGG - Chr3:99747138-99747157 MsG0380017700.01.T01:CDS 40.0%
!! ACATCCCAGTTTTGTGTTGT+AGG - Chr3:99746902-99746921 MsG0380017700.01.T01:intron 40.0%
!! CATCCCAGTTTTGTGTTGTA+GGG - Chr3:99746903-99746922 MsG0380017700.01.T01:intron 40.0%
!! GGTAAAGAGGCTTGTTATCA+AGG + Chr3:99747485-99747504 None:intergenic 40.0%
!! GTTCCAGAATTATAATGGGC+TGG + Chr3:99748505-99748524 None:intergenic 40.0%
!!! TTTTAGACTTGGTGCCCATT+TGG - Chr3:99747763-99747782 MsG0380017700.01.T01:intron 40.0%
AGATCAATGCCGCATTGTTG+GGG + Chr3:99746044-99746063 None:intergenic 45.0%
ATCACAATTGAGCCGGACTA+TGG + Chr3:99746619-99746638 None:intergenic 45.0%
CCCAGAATCCTTACAAGCAA+TGG - Chr3:99746385-99746404 MsG0380017700.01.T01:intron 45.0%
CTCAGTGAACAATTCAGCCA+GGG - Chr3:99746681-99746700 MsG0380017700.01.T01:intron 45.0%
GAAACAAACGCACCCATAGT+TGG + Chr3:99747999-99748018 None:intergenic 45.0%
GAACAAAGCTACTCATGGTC+TGG + Chr3:99746474-99746493 None:intergenic 45.0%
GAAGTTCATGGACGCACATT+TGG - Chr3:99747411-99747430 MsG0380017700.01.T01:intron 45.0%
GCAACAGAACATTGGGATGT+AGG + Chr3:99745973-99745992 None:intergenic 45.0%
GCAATGGATGTTACAGGTTC+TGG - Chr3:99746401-99746420 MsG0380017700.01.T01:intron 45.0%
GGCCCTGCATTTATTGGAAA+TGG - Chr3:99746282-99746301 MsG0380017700.01.T01:intron 45.0%
GGTTAGCAATATCAGAGGTC+AGG - Chr3:99746874-99746893 MsG0380017700.01.T01:intron 45.0%
GTAACTGTGAAATGCCTGCA+AGG + Chr3:99746595-99746614 None:intergenic 45.0%
GTCGAAGAAACCGAACCATA+CGG + Chr3:99745734-99745753 None:intergenic 45.0%
GTTGCAGTGAGTGAAGTTCA+TGG - Chr3:99747399-99747418 MsG0380017700.01.T01:intron 45.0%
TCTCAGTGAACAATTCAGCC+AGG - Chr3:99746680-99746699 MsG0380017700.01.T01:intron 45.0%
TGCCTGTTGTGCATATCTTC+AGG - Chr3:99746173-99746192 MsG0380017700.01.T01:intron 45.0%
TTCACAGTTACGCCATAGTC+CGG - Chr3:99746604-99746623 MsG0380017700.01.T01:intron 45.0%
TTCCAATAAATGCAGGGCCA+TGG + Chr3:99746281-99746300 None:intergenic 45.0%
! ATGGACGCACATTTGGAACT+TGG - Chr3:99747418-99747437 MsG0380017700.01.T01:intron 45.0%
! CATATAGGGCCCGTTTGTTT+TGG + Chr3:99748337-99748356 None:intergenic 45.0%
! GGATCCCAGTTTTCTGTTGT+AGG - Chr3:99746852-99746871 MsG0380017700.01.T01:intron 45.0%
! GGCTGGAAAGTATACAGTAG+AGG + Chr3:99748488-99748507 None:intergenic 45.0%
! GGTTCGGTTTCTTCGACATT+TGG - Chr3:99745737-99745756 MsG0380017700.01.T01:three_prime_UTR 45.0%
!! CGATTAGCTTCCGTATGGTT+CGG - Chr3:99745721-99745740 MsG0380017700.01.T01:three_prime_UTR 45.0%
ACATTGGTGCAGGTTGTCTC+AGG + Chr3:99746806-99746825 None:intergenic 50.0%
ACCACTGTCGGCATATTTGC+AGG - Chr3:99747591-99747610 MsG0380017700.01.T01:intron 50.0%
ACCTGCAAATATGCCGACAG+TGG + Chr3:99747595-99747614 None:intergenic 50.0%
AGCTGAACTGCGCAGCATAT+AGG + Chr3:99748352-99748371 None:intergenic 50.0%
CAATTCAGCCAGGGTCAGAT+CGG - Chr3:99746690-99746709 MsG0380017700.01.T01:intron 50.0%
CACCATGGCCCTGCATTTAT+TGG - Chr3:99746276-99746295 MsG0380017700.01.T01:intron 50.0%
CATTGGTGCAGGTTGTCTCA+GGG + Chr3:99746805-99746824 None:intergenic 50.0%
GATCAATGCCGCATTGTTGG+GGG + Chr3:99746043-99746062 None:intergenic 50.0%
GATGTGGGGCATGGTTATCA+CGG + Chr3:99746770-99746789 None:intergenic 50.0%
GCTGAACTGCGCAGCATATA+GGG + Chr3:99748351-99748370 None:intergenic 50.0%
! ACAGATATAGCAGAGGGTGC+AGG + Chr3:99747454-99747473 None:intergenic 50.0%
!! CGCTTCGATTAGCTTCCGTA+TGG - Chr3:99745716-99745735 MsG0380017700.01.T01:three_prime_UTR 50.0%
GGGATCCACCTGACAGTTCT+AGG + Chr3:99746839-99746858 None:intergenic 55.0%
TATCAGGACCGATCTGACCC+TGG + Chr3:99746701-99746720 None:intergenic 55.0%
TCACTGAGATTGTGCCGCAG+TGG + Chr3:99746669-99746688 None:intergenic 55.0%
! AAGGCTTCGAGCGGACTTTC+AGG + Chr3:99748674-99748693 None:intergenic 55.0%
! GTTGGGATGGTGGCTGATAG+CGG - Chr3:99745687-99745706 MsG0380017700.01.T01:three_prime_UTR 55.0%
!! GATGGTGGCTGATAGCGGTT+GGG - Chr3:99745692-99745711 MsG0380017700.01.T01:three_prime_UTR 55.0%
AGGGACGGCTCTACTGGATG+TGG + Chr3:99746786-99746805 None:intergenic 60.0%
GCTCTACTGGATGTGGGGCA+TGG + Chr3:99746779-99746798 None:intergenic 60.0%
GGACGGCTCTACTGGATGTG+GGG + Chr3:99746784-99746803 None:intergenic 60.0%
GGGACGGCTCTACTGGATGT+GGG + Chr3:99746785-99746804 None:intergenic 60.0%
GGTGCAGGTTGTCTCAGGGA+CGG + Chr3:99746801-99746820 None:intergenic 60.0%
TGTCTCAGGGACGGCTCTAC+TGG + Chr3:99746792-99746811 None:intergenic 60.0%
!! GGATGGTGGCTGATAGCGGT+TGG - Chr3:99745691-99745710 MsG0380017700.01.T01:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 99745679 99749047 99745679 ID=MsG0380017700.01;Name=MsG0380017700.01
Chr3 mRNA 99745679 99749047 99745679 ID=MsG0380017700.01.T01;Parent=MsG0380017700.01;Name=MsG0380017700.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.5|0.33|1|0.5|0.33|3|337|140
Chr3 exon 99745679 99746095 99745679 ID=MsG0380017700.01.T01:exon:35741;Parent=MsG0380017700.01.T01
Chr3 exon 99747114 99747337 99747114 ID=MsG0380017700.01.T01:exon:35740;Parent=MsG0380017700.01.T01
Chr3 exon 99748929 99749047 99748929 ID=MsG0380017700.01.T01:exon:35739;Parent=MsG0380017700.01.T01
Chr3 CDS 99748929 99749047 99748929 ID=MsG0380017700.01.T01:cds;Parent=MsG0380017700.01.T01
Chr3 CDS 99747114 99747337 99747114 ID=MsG0380017700.01.T01:cds;Parent=MsG0380017700.01.T01
Chr3 CDS 99746016 99746095 99746016 ID=MsG0380017700.01.T01:cds;Parent=MsG0380017700.01.T01
Chr3 three_prime_UTR 99745679 99746015 99745679 ID=MsG0380017700.01.T01:three_prime_utr;Parent=MsG0380017700.01.T01
Gene Sequence

>MsG0380017700.01.T01

ATGAAGGCGTTGGGATGGTGGCTGATAGCGGTTGGGACGCTTCGATTAGCTTCCGTATGGTTCGGTTTCTTCGACATTTGGGCTCTTCGACTCGCCGTCTTCTCTAACACTACCAGTAATTTCTCACTTGTTGCAGTGAGTGAAGTTCATGGACGCACATTTGGAACTTGGACACTGTTGACCTGCACCCTCTGCTATATCTGTGCATTCAACCTTGATAACAAGCCTCTTTACCTGGCAACTTTTTTGTCATTCATCTACGCGTTTGGTCATTTCTTGACCGAATACCTAATTTATCACACAATGGCAATTTCGAATCTCACCACTGTCGGCATATTTGCAGGAACATCAATAGTATGGATGCTATTGCAATGGAATGCGCACCTGAAAGTCCGCTCGAAGCCTTCTAATAGAAAGCATTAG
Protein sequence

>MsG0380017700.01.T01

MKALGWWLIAVGTLRLASVWFGFFDIWALRLAVFSNTTSNFSLVAVSEVHGRTFGTWTLLTCTLCYICAFNLDNKPLYLATFLSFIYAFGHFLTEYLIYHTMAISNLTTVGIFAGTSIVWMLLQWNAHLKVRSKPSNRKH*