AlfalfaGEDB | MsG0880044356.01

M. sativa cultivar ZhongmuNo.1 / MsG0880044356.01

KEGG: K15377
GO: -
PFAM: PF04515

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044356.01.T01	XP_013445405.1	89.74	770	9	2	1	770	1	700	0	1399

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044356.01.T01	Q94AN2	68.497	765	169	4	1	764	1	694	0	1081

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044356.01.T01	A0A072TQG6	89.740	770	9	2	1	770	1	700	0.0	1399

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080049008.01	MsG0880044356.01	0.879566	1.122692e-69	6.115778e-66
MsG0180000535.01	MsG0880044356.01	0.810284	1.244182e-50	7.469090e-48
MsG0180003238.01	MsG0880044356.01	0.823214	1.562630e-53	1.336953e-50
MsG0180003430.01	MsG0880044356.01	0.834279	3.286137e-56	3.881336e-53
MsG0180003484.01	MsG0880044356.01	0.801329	9.479023e-49	4.514417e-46
MsG0180003905.01	MsG0880044356.01	0.836266	1.035201e-56	1.298001e-53
MsG0180004652.01	MsG0880044356.01	0.821739	3.440057e-53	2.822396e-50
MsG0180005780.01	MsG0880044356.01	0.800450	1.432940e-48	6.674143e-46
MsG0180005819.01	MsG0880044356.01	0.848291	6.731195e-60	1.229441e-56
MsG0180005984.01	MsG0880044356.01	0.828207	1.022000e-54	1.009064e-51

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044356.01.T01	MTR_8g059125	89.740	770	9	2	1	770	1	700	0.0	1399
MsG0880044356.01.T01	MTR_2g079490	73.510	755	126	5	15	768	4	685	0.0	1129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044356.01.T01	AT3G15380	68.497	765	169	4	1	764	1	694	0.0	1081

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Find 191 sgRNAs with CRISPR-Local

Find 529 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGACATACCACAACA+GGG	0.717527	8:+40494994	None:intergenic
AAACACATCACTGAAGCATT+GGG	0.512838	8:-40498189	MsG0880044356.01.T01:CDS
AAACTCCTCTCTTCAACTTC+AGG	0.331107	8:-40498364	MsG0880044356.01.T01:CDS
AAAGGGGTTAGTAGAGAATG+AGG	0.471782	8:+40499769	None:intergenic
AAAGTATCTAGCCATATGCA+TGG	0.639805	8:-40495451	MsG0880044356.01.T01:CDS
AAAGTTGATAATTGAAAATG+AGG	0.482257	8:-40499683	MsG0880044356.01.T01:exon
AAATCATGTAAAACACGGCA+AGG	0.596632	8:+40496255	None:intergenic
AAATCGAAATGCTTATATCA+TGG	0.509618	8:-40495353	MsG0880044356.01.T01:intron
AACACGGCAAGGATAGCATA+TGG	0.475523	8:+40496266	None:intergenic
AACAGGGAAGAGTGGAGATG+AGG	0.629998	8:+40495010	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGCAATTGAAGTGAGAA+TGG	+	Chr8:40494870-40494889	None:intergenic	30.0%
AATGCAGCTAAATTAGAAAC+AGG	+	Chr8:40499165-40499184	None:intergenic	30.0%
ACAAGTTTCATTATGATCCT+TGG	+	Chr8:40499578-40499597	None:intergenic	30.0%
ACTCGTAAACTATCTACATA+TGG	-	Chr8:40499062-40499081	MsG0880044356.01.T01:intron	30.0%
AGAACACCAATAAAAGTAGT+AGG	+	Chr8:40493544-40493563	None:intergenic	30.0%
AGAAGATGAAGAAGATGAAA+GGG	+	Chr8:40491851-40491870	None:intergenic	30.0%
AGTATGGAAATTCCAATATG+TGG	+	Chr8:40495508-40495527	None:intergenic	30.0%
AGTCCAAATCATGTAAAACA+CGG	+	Chr8:40495353-40495372	None:intergenic	30.0%
ATATATGCATTGCTGGTAAA+AGG	-	Chr8:40499697-40499716	MsG0880044356.01.T01:five_prime_UTR	30.0%
ATATTTGGTCGAAATTGAAC+AGG	-	Chr8:40498763-40498782	MsG0880044356.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	40491803	40499819	40491803	ID=MsG0880044356.01;Name=MsG0880044356.01
Chr8	mRNA	40491803	40499819	40491803	ID=MsG0880044356.01.T01;Parent=MsG0880044356.01;Name=MsG0880044356.01.T01;_AED=0.39;_eAED=0.42;_QI=131\|0.77\|0.7\|1\|0.88\|0.8\|10\|232\|770
Chr8	exon	40491803	40492226	40491803	ID=MsG0880044356.01.T01:exon:7795;Parent=MsG0880044356.01.T01
Chr8	exon	40495007	40495234	40495007	ID=MsG0880044356.01.T01:exon:7794;Parent=MsG0880044356.01.T01
Chr8	exon	40495354	40495614	40495354	ID=MsG0880044356.01.T01:exon:7793;Parent=MsG0880044356.01.T01
Chr8	exon	40495986	40496342	40495986	ID=MsG0880044356.01.T01:exon:7792;Parent=MsG0880044356.01.T01
Chr8	exon	40496613	40496810	40496613	ID=MsG0880044356.01.T01:exon:7791;Parent=MsG0880044356.01.T01
Chr8	exon	40496915	40496988	40496915	ID=MsG0880044356.01.T01:exon:7790;Parent=MsG0880044356.01.T01
Chr8	exon	40497696	40497917	40497696	ID=MsG0880044356.01.T01:exon:7789;Parent=MsG0880044356.01.T01
Chr8	exon	40498012	40498245	40498012	ID=MsG0880044356.01.T01:exon:7788;Parent=MsG0880044356.01.T01
Chr8	exon	40498328	40498686	40498328	ID=MsG0880044356.01.T01:exon:7787;Parent=MsG0880044356.01.T01
Chr8	exon	40499501	40499819	40499501	ID=MsG0880044356.01.T01:exon:7786;Parent=MsG0880044356.01.T01
Chr8	five_prime_UTR	40499689	40499819	40499689	ID=MsG0880044356.01.T01:five_prime_utr;Parent=MsG0880044356.01.T01
Chr8	CDS	40499501	40499688	40499501	ID=MsG0880044356.01.T01:cds;Parent=MsG0880044356.01.T01
Chr8	CDS	40498328	40498686	40498328	ID=MsG0880044356.01.T01:cds;Parent=MsG0880044356.01.T01
Chr8	CDS	40498012	40498245	40498012	ID=MsG0880044356.01.T01:cds;Parent=MsG0880044356.01.T01
Chr8	CDS	40497696	40497917	40497696	ID=MsG0880044356.01.T01:cds;Parent=MsG0880044356.01.T01
Chr8	CDS	40496915	40496988	40496915	ID=MsG0880044356.01.T01:cds;Parent=MsG0880044356.01.T01
Chr8	CDS	40496613	40496810	40496613	ID=MsG0880044356.01.T01:cds;Parent=MsG0880044356.01.T01
Chr8	CDS	40495986	40496342	40495986	ID=MsG0880044356.01.T01:cds;Parent=MsG0880044356.01.T01
Chr8	CDS	40495354	40495614	40495354	ID=MsG0880044356.01.T01:cds;Parent=MsG0880044356.01.T01
Chr8	CDS	40495007	40495234	40495007	ID=MsG0880044356.01.T01:cds;Parent=MsG0880044356.01.T01
Chr8	CDS	40492035	40492226	40492035	ID=MsG0880044356.01.T01:cds;Parent=MsG0880044356.01.T01
Chr8	three_prime_UTR	40491803	40492034	40491803	ID=MsG0880044356.01.T01:three_prime_utr;Parent=MsG0880044356.01.T01

Gene Sequence

>MsG0880044356.01.T01

ATGAGGGGTCCTTTAGGTGCAGTGATAGGAAGCTATACATCAAGTGATGGAGTTACTCAAATGGGTGGTGGAATCATTAAGCATAATAGAAAATGTAGAGATATCACTGCTCTTGTTATCTTTATTGCTTTTTGGATTGCAATGATTGTTAATTCCAGTTTTGGTTTTAACCAAGGAAACCCACTTAGGCTTACTTATGGGCTGGACTACAAAGGTAATGTGTGCGGTGACAAGCATGCACATCCTGGCCTTGGTGAATTGGAGCTCAGATATTGGCAGAATCCTAACCAAGTTTATCAGACTGGATTGAAGGATAGCCAATTCAAACTAGTCAATGCTCGTAGCATATGCTTGTCGGAATGCCCTATTCCTGCTGATGATTCTCTTAAATGGGTGTGTGATTATCCTGAAGGAGATATCCGTCTTTCCATGGAAGATTGGATCAAGACTGACTATGATTATTATCAGTTCCTTACACCTGATATGAGAAACTCCTCTCTTCAACTTCAGGGCCCATGTTATCCTGTTATATTTCCTAGTGTAAATGTTTACTGGAGTTGCCAGTTTATTGCTCGACCATCAAACACATCACTGAAGCATTGGGAGCAGATGGGTGGAGTTAGCATCAATGAAGACATTGTTATTGATAAATCAATTCACAAGTCTATTAATTCTCGATCAGCTGTCTTGAAGGTTAAAATTTTTCAACTTCCTACTACTTTTATTGGTGTTCTGATTGTAACTTTGTACAAGGACGGCGTAACAATGCAATATCAACATTGCTGTAGAATTAAAATGTGTTTCGATTTGTATTTACAGAGGTACATGGCTGACATAGGAAAGGCATGGCCTGTGCTGATTGTTTGTGGAGGGATTTTACCTCTTTTTCTGTCTGTGATTTGGCTGATGATGATTCGGCATTTTGTTGCTGCAATGCCGTGGATAACAGTGGTTCTCTTTAATGTTCTAATAATAGCAGTCACAATGTTCTTCTACATAAAAGCTGGATGGATTGGAAATGATGCTATTTCTCCCATCATTGGTGAGCATGATCCTTACATTAATGTATTTGGGAGGGAGTTAACTCATCTACGTGTTGTCACTGTACTTATGACCGTTGTCATGGCTGTTTCCATTCTCACTTCAATTGCTATTGTACGGCGCATCCTTATGGCAACATCTGTCCTCAAGGCAAGCATCGCTTTGTCATATCCAATTATTAAATTATTTTCTTATTATTTTTGTTTTATGATTTCTCTAAAACTTTCTGTGCTGGTTGCTGCAAAAGTAATAGGAGAAGTTCAAGCACTCATAATTTTTCCAATCATCCCATATGCTATCCTTGCCGTGTTTTACATGATTTGGACTTCAGCTGCTCTCCATTTATTCAGCTCTGGCCAGATTGTTCAGAATGACTGCAACTCTAACTGCTGCACGTATGATCTTGTGGCAAAACGGGTGAACTGTGACCGTTGTTGTGGATATAGCATTCATTACACACCACATATTGGAATTTCCATACTTTTTCACCTATTTGGGTGCTATTGGGCCACACAATTTTTCGTAGCGTGCTCCTCAACAGTGGTTGCTGGGTCTGTTGCTTCTTATTACTGGGCCCACGGTGAAACATCTCATGAAATTCCATTTCTGTCAGTTTTTTCCTCCATGAAAAGGCTTATGCGTTACAGTCTCGGATCGGTGGCTCTTGGTTCTCTGATAGTGTCATTTGTAGAATCAATCCGGTTTCTGCTTGAATCTCTTCGTCGCAAACTAAAAGTATCTAGCCATATGCATGGCAGCTGGATAGGCAAGGCTGCACATCAATCTTCTCAATGTTTTCTCAGGTGTATTGAGTGGACAATCAAATCAGTAAATCGAAATGCTTATATCATGATTGCTATAACTGGCAAAAGTTTCTTTAGCGCGTCTTCTATAGCAACAGATTTGATCATGAATAACATTCTAAAGATTGGGCGTCTTAATGTGATCGGAGATGTCATTTTGTTCCTTGGAAAACTGTGTGTCAGCCTCTCAAGTTCCGTGTTTGCATTCCTCATGTTAGACACACACAAGTACAGTTCTGGCCATAACAAGACCTCATCTCCACTCTTCCCTGTTGTGGTATGCTGGGCTCTTGGATATACTGTTGCAACTCTATTCTTTGCAGTGGTGGAGATGTCAATTGATACAATAGTTCTCTCATTCTGCCAAGATTCTGAAGAACACCAAGGGACAGCACAGTATGCCCCACCCCTTCTCATGGAAACTCTCGGTAACCAAAATGAGACGAATAGACTTACCCAAGGATCATAA

Protein sequence

>MsG0880044356.01.T01

MRGPLGAVIGSYTSSDGVTQMGGGIIKHNRKCRDITALVIFIAFWIAMIVNSSFGFNQGNPLRLTYGLDYKGNVCGDKHAHPGLGELELRYWQNPNQVYQTGLKDSQFKLVNARSICLSECPIPADDSLKWVCDYPEGDIRLSMEDWIKTDYDYYQFLTPDMRNSSLQLQGPCYPVIFPSVNVYWSCQFIARPSNTSLKHWEQMGGVSINEDIVIDKSIHKSINSRSAVLKVKIFQLPTTFIGVLIVTLYKDGVTMQYQHCCRIKMCFDLYLQRYMADIGKAWPVLIVCGGILPLFLSVIWLMMIRHFVAAMPWITVVLFNVLIIAVTMFFYIKAGWIGNDAISPIIGEHDPYINVFGRELTHLRVVTVLMTVVMAVSILTSIAIVRRILMATSVLKASIALSYPIIKLFSYYFCFMISLKLSVLVAAKVIGEVQALIIFPIIPYAILAVFYMIWTSAALHLFSSGQIVQNDCNSNCCTYDLVAKRVNCDRCCGYSIHYTPHIGISILFHLFGCYWATQFFVACSSTVVAGSVASYYWAHGETSHEIPFLSVFSSMKRLMRYSLGSVALGSLIVSFVESIRFLLESLRRKLKVSSHMHGSWIGKAAHQSSQCFLRCIEWTIKSVNRNAYIMIAITGKSFFSASSIATDLIMNNILKIGRLNVIGDVILFLGKLCVSLSSSVFAFLMLDTHKYSSGHNKTSSPLFPVVVCWALGYTVATLFFAVVEMSIDTIVLSFCQDSEEHQGTAQYAPPLLMETLGNQNETNRLTQGS*