Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017823.01.T01 | XP_013462189.1 | 83.916 | 286 | 31 | 3 | 15 | 291 | 4 | 283 | 2.53E-159 | 455 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017823.01.T01 | Q9FXH7 | 42.424 | 330 | 117 | 17 | 20 | 290 | 19 | 334 | 3.92E-59 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017823.01.T01 | A0A072V2G0 | 83.916 | 286 | 31 | 3 | 15 | 291 | 4 | 283 | 1.21e-159 | 455 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0380017823.01.T01 | TF | SRS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048357.01 | MsG0380017823.01 | 0.800570 | 1.354866e-48 | 6.329635e-46 |
| MsG0180001771.01 | MsG0380017823.01 | 0.823747 | 1.172400e-53 | 1.018483e-50 |
| MsG0380017823.01 | MsG0580029417.01 | 0.803670 | 3.119895e-49 | 1.577151e-46 |
| MsG0380017823.01 | MsG0580029418.01 | 0.835712 | 1.430041e-56 | 1.763251e-53 |
| MsG0380017823.01 | MsG0680031707.01 | 0.823914 | 1.071782e-53 | 9.353649e-51 |
| MsG0380017823.01 | MsG0780040966.01 | 0.833252 | 5.934644e-56 | 6.796551e-53 |
| MsG0380017823.01 | MsG0780041676.01 | 0.813003 | 3.189203e-51 | 2.058227e-48 |
| MsG0380017823.01 | MsG0880042958.01 | 0.800034 | 1.741851e-48 | 8.027659e-46 |
| MsG0280007305.01 | MsG0380017823.01 | 0.844442 | 7.539260e-59 | 1.217275e-55 |
| MsG0280007414.01 | MsG0380017823.01 | 0.801704 | 7.942494e-49 | 3.818494e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017823.01.T01 | MTR_3g112510 | 83.916 | 286 | 31 | 3 | 15 | 291 | 4 | 283 | 3.07e-163 | 455 |
| MsG0380017823.01.T01 | MTR_8g076620 | 49.367 | 237 | 94 | 7 | 68 | 291 | 97 | 320 | 1.28e-58 | 191 |
| MsG0380017823.01.T01 | MTR_5g021130 | 38.679 | 318 | 145 | 12 | 15 | 291 | 4 | 312 | 9.21e-49 | 165 |
| MsG0380017823.01.T01 | MTR_1g023230 | 45.098 | 204 | 61 | 7 | 36 | 194 | 32 | 229 | 2.00e-33 | 123 |
| MsG0380017823.01.T01 | MTR_4g071110 | 43.558 | 163 | 58 | 6 | 92 | 246 | 14 | 150 | 2.34e-33 | 123 |
| MsG0380017823.01.T01 | MTR_5g089750 | 44.304 | 158 | 71 | 4 | 95 | 237 | 249 | 404 | 2.61e-32 | 124 |
| MsG0380017823.01.T01 | MTR_8g039110 | 36.842 | 209 | 95 | 8 | 95 | 275 | 124 | 323 | 5.92e-30 | 115 |
| MsG0380017823.01.T01 | MTR_3g014660 | 40.373 | 161 | 67 | 6 | 95 | 234 | 134 | 286 | 9.25e-28 | 109 |
| MsG0380017823.01.T01 | MTR_0363s0040 | 75.556 | 45 | 11 | 0 | 95 | 139 | 124 | 168 | 4.26e-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017823.01.T01 | AT1G19790 | 42.424 | 330 | 117 | 17 | 20 | 290 | 19 | 334 | 3.99e-60 | 195 |
| MsG0380017823.01.T01 | AT1G19790 | 42.424 | 330 | 117 | 17 | 20 | 290 | 19 | 334 | 3.99e-60 | 195 |
| MsG0380017823.01.T01 | AT1G75520 | 37.989 | 358 | 120 | 12 | 13 | 291 | 3 | 337 | 7.86e-57 | 186 |
| MsG0380017823.01.T01 | AT5G66350 | 48.148 | 216 | 80 | 7 | 95 | 291 | 120 | 322 | 7.74e-52 | 173 |
| MsG0380017823.01.T01 | AT5G66350 | 48.598 | 214 | 78 | 7 | 95 | 289 | 120 | 320 | 8.17e-52 | 173 |
| MsG0380017823.01.T01 | AT5G66350 | 48.148 | 216 | 80 | 7 | 95 | 291 | 120 | 322 | 8.44e-52 | 173 |
| MsG0380017823.01.T01 | AT3G51060 | 45.887 | 231 | 80 | 9 | 93 | 290 | 142 | 360 | 1.23e-46 | 160 |
| MsG0380017823.01.T01 | AT4G36260 | 49.102 | 167 | 56 | 4 | 89 | 235 | 88 | 245 | 1.99e-41 | 145 |
| MsG0380017823.01.T01 | AT2G18120 | 43.284 | 201 | 83 | 8 | 41 | 237 | 32 | 205 | 3.56e-39 | 137 |
| MsG0380017823.01.T01 | AT2G21400 | 50.336 | 149 | 49 | 5 | 86 | 234 | 1 | 124 | 9.15e-39 | 134 |
| MsG0380017823.01.T01 | AT2G21400 | 51.748 | 143 | 44 | 5 | 92 | 234 | 6 | 123 | 9.89e-39 | 134 |
| MsG0380017823.01.T01 | AT2G18120 | 42.857 | 203 | 83 | 8 | 41 | 237 | 32 | 207 | 1.19e-38 | 135 |
| MsG0380017823.01.T01 | AT2G21400 | 49.020 | 153 | 60 | 6 | 86 | 234 | 1 | 139 | 6.23e-38 | 133 |
| MsG0380017823.01.T01 | AT2G21400 | 50.340 | 147 | 55 | 6 | 92 | 234 | 6 | 138 | 7.83e-38 | 132 |
| MsG0380017823.01.T01 | AT5G12330 | 42.391 | 184 | 79 | 8 | 95 | 254 | 112 | 292 | 1.02e-29 | 115 |
| MsG0380017823.01.T01 | AT5G12330 | 42.391 | 184 | 79 | 8 | 95 | 254 | 112 | 292 | 1.02e-29 | 115 |
| MsG0380017823.01.T01 | AT5G12330 | 45.342 | 161 | 64 | 6 | 95 | 234 | 199 | 356 | 1.33e-29 | 116 |
| MsG0380017823.01.T01 | AT5G33210 | 75.926 | 54 | 13 | 0 | 93 | 146 | 15 | 68 | 1.63e-24 | 95.5 |
| MsG0380017823.01.T01 | AT5G33210 | 75.926 | 54 | 13 | 0 | 93 | 146 | 50 | 103 | 8.33e-24 | 95.5 |
| MsG0380017823.01.T01 | AT3G54430 | 36.806 | 144 | 81 | 4 | 91 | 234 | 37 | 170 | 1.15e-23 | 95.5 |
| MsG0380017823.01.T01 | AT5G12330 | 82.609 | 46 | 8 | 0 | 95 | 140 | 112 | 157 | 8.02e-21 | 89.0 |
Find 75 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACCTATTGAAGGTTCTTC+TGG | 0.278915 | 3:-101027406 | MsG0380017823.01.T01:CDS |
| GCAATACTGGTGTAAAGATT+TGG | 0.352201 | 3:+101027427 | None:intergenic |
| AGCTCCGCTCAATGCTTTCA+TGG | 0.372783 | 3:-101027287 | MsG0380017823.01.T01:CDS |
| GATGAGTGTGAAAGAAGATT+TGG | 0.383103 | 3:-101028477 | MsG0380017823.01.T01:CDS |
| ACCTTCAATAGGTGCAATAC+TGG | 0.385502 | 3:+101027414 | None:intergenic |
| TTGAACATTTACAATGCGTT+TGG | 0.402855 | 3:-101028537 | MsG0380017823.01.T01:CDS |
| CCGTTTCGTCGTCGAGATCA+TGG | 0.410173 | 3:-101028270 | MsG0380017823.01.T01:CDS |
| AGAGATGTTGTTGTCGTTCA+CGG | 0.410405 | 3:+101028301 | None:intergenic |
| CCACCAGAGGTGAGTTCTCC+AGG | 0.416959 | 3:-101027574 | MsG0380017823.01.T01:CDS |
| TGCTACTTAGGGTTGGAGTT+GGG | 0.432629 | 3:-101027603 | MsG0380017823.01.T01:intron |
| ACCAGTATTGCACCTATTGA+AGG | 0.434447 | 3:-101027415 | MsG0380017823.01.T01:CDS |
| AGGGATGGGTGTTGAGGGCA+AGG | 0.436247 | 3:+101028199 | None:intergenic |
| AAACACATGTTAAGAGTACT+TGG | 0.440077 | 3:-101028341 | MsG0380017823.01.T01:CDS |
| TACGCGCATTGCTCATGATC+TGG | 0.452659 | 3:+101027511 | None:intergenic |
| ACAACAAAGGGTTAGAGATA+TGG | 0.454400 | 3:-101028572 | MsG0380017823.01.T01:CDS |
| ATTGAGCGGAGCTGAGTAAA+GGG | 0.455523 | 3:+101027297 | None:intergenic |
| AAAGGAATTCTCTATGATCA+AGG | 0.458943 | 3:-101027454 | MsG0380017823.01.T01:CDS |
| CGTTCACGGCGTTTAGCAGC+GGG | 0.464082 | 3:+101028315 | None:intergenic |
| GTTCTCCAGGAGTAACGTTT+CGG | 0.464963 | 3:-101027561 | MsG0380017823.01.T01:CDS |
| TGTGGTAGGGATGGGTGTTG+AGG | 0.467781 | 3:+101028193 | None:intergenic |
| GTGGTAGGGATGGGTGTTGA+GGG | 0.470545 | 3:+101028194 | None:intergenic |
| CTCAATGCTTTCATGGCAGC+TGG | 0.470851 | 3:-101027280 | None:intergenic |
| GGTTATTTGTCTAGGTAGAA+AGG | 0.471680 | 3:-101028667 | MsG0380017823.01.T01:CDS |
| CTGCTACTTAGGGTTGGAGT+TGG | 0.473418 | 3:-101027604 | MsG0380017823.01.T01:intron |
| TGAGCAATGCGCGTATCAAA+CGG | 0.474401 | 3:-101027503 | MsG0380017823.01.T01:CDS |
| CCACCAGAAGAACCTTCAAT+AGG | 0.475713 | 3:+101027403 | None:intergenic |
| ATTTACAATGCGTTTGGAGC+GGG | 0.476042 | 3:-101028531 | MsG0380017823.01.T01:CDS |
| AGGAGATCTGTAACAACAAA+GGG | 0.490596 | 3:-101028584 | MsG0380017823.01.T01:CDS |
| CCATGATCTCGACGACGAAA+CGG | 0.500595 | 3:+101028270 | None:intergenic |
| GTGTTGAGGGCAAGGAAGAG+AGG | 0.502761 | 3:+101028207 | None:intergenic |
| AATAATTATATACCTGTGGT+AGG | 0.506589 | 3:+101028179 | None:intergenic |
| TGAGTACTGCAACAAATGGC+TGG | 0.507692 | 3:-101028689 | MsG0380017823.01.T01:CDS |
| AATGGCTGGGTTATTTGTCT+AGG | 0.511851 | 3:-101028675 | MsG0380017823.01.T01:CDS |
| ACACACCGAAACGTTACTCC+TGG | 0.517806 | 3:+101027556 | None:intergenic |
| CCTATTGAAGGTTCTTCTGG+TGG | 0.522897 | 3:-101027403 | MsG0380017823.01.T01:CDS |
| TATCAAACGGCTGTGAACAT+AGG | 0.523500 | 3:-101027490 | MsG0380017823.01.T01:CDS |
| CATTGAGCGGAGCTGAGTAA+AGG | 0.525999 | 3:+101027296 | None:intergenic |
| TAGTGGAGGAATGAATTGTC+AGG | 0.528718 | 3:-101028442 | MsG0380017823.01.T01:CDS |
| TTATATACCTGTGGTAGGGA+TGG | 0.531535 | 3:+101028184 | None:intergenic |
| AAAGAAGATTTGGTATAATG+AGG | 0.534847 | 3:-101028467 | MsG0380017823.01.T01:CDS |
| ATTGAAGGTTCTTCTGGTGG+AGG | 0.544276 | 3:-101027400 | MsG0380017823.01.T01:CDS |
| AGTAAAGGGAAGGGTCGAAT+GGG | 0.547906 | 3:+101027311 | None:intergenic |
| GAGTAAAGGGAAGGGTCGAA+TGG | 0.551923 | 3:+101027310 | None:intergenic |
| GAACTTGTTGCAAGAGTCGA+GGG | 0.552988 | 3:-101028374 | MsG0380017823.01.T01:CDS |
| CCTGGAGAACTCACCTCTGG+TGG | 0.557186 | 3:+101027574 | None:intergenic |
| TATATACCTGTGGTAGGGAT+GGG | 0.558801 | 3:+101028185 | None:intergenic |
| TCGTTCACGGCGTTTAGCAG+CGG | 0.564542 | 3:+101028314 | None:intergenic |
| GTGTGTGAGAGTGAGTTCAT+TGG | 0.567712 | 3:-101027539 | MsG0380017823.01.T01:CDS |
| CAAACGGCTGTGAACATAGG+AGG | 0.569957 | 3:-101027487 | MsG0380017823.01.T01:CDS |
| ATAATTATATACCTGTGGTA+GGG | 0.570372 | 3:+101028180 | None:intergenic |
| ACTCCTGGAGAACTCACCTC+TGG | 0.575897 | 3:+101027571 | None:intergenic |
| CGGCACACAGAAATTAATCA+AGG | 0.578142 | 3:-101028235 | MsG0380017823.01.T01:CDS |
| GATCATGGAGACATTACAAA+CGG | 0.581641 | 3:-101028255 | MsG0380017823.01.T01:CDS |
| AGCGGAGCTGAGTAAAGGGA+AGG | 0.586546 | 3:+101027301 | None:intergenic |
| CATTTACAATGCGTTTGGAG+CGG | 0.587822 | 3:-101028532 | MsG0380017823.01.T01:CDS |
| TTTGGTATAATGAGGCGTAG+TGG | 0.591379 | 3:-101028459 | MsG0380017823.01.T01:CDS |
| TTGTTGAGTACTGCAACAAA+TGG | 0.591664 | 3:-101028693 | MsG0380017823.01.T01:CDS |
| ATACTGGTGTAAAGATTTGG+AGG | 0.592879 | 3:+101027430 | None:intergenic |
| AGAACTTGTTGCAAGAGTCG+AGG | 0.598909 | 3:-101028375 | MsG0380017823.01.T01:CDS |
| AGAATTATTGTTAAGAAACG+AGG | 0.601425 | 3:-101028604 | MsG0380017823.01.T01:CDS |
| TCAACACCCATCCCTACCAC+AGG | 0.604530 | 3:-101028191 | MsG0380017823.01.T01:intron |
| GTCATGAAATCAAGTTGTTG+AGG | 0.608390 | 3:+101027367 | None:intergenic |
| AGGGTCGAATGGGATACCGC+TGG | 0.611002 | 3:+101027321 | None:intergenic |
| GAGGAGATCTGTAACAACAA+AGG | 0.614950 | 3:-101028585 | MsG0380017823.01.T01:CDS |
| TAAATGTTCAAGCTTTGTTG+TGG | 0.618391 | 3:+101028549 | None:intergenic |
| GGTATAATGAGGCGTAGTGG+AGG | 0.645542 | 3:-101028456 | MsG0380017823.01.T01:CDS |
| AACACATGTTAAGAGTACTT+GGG | 0.648062 | 3:-101028340 | MsG0380017823.01.T01:CDS |
| AAACGGCTGTGAACATAGGA+GGG | 0.648226 | 3:-101027486 | MsG0380017823.01.T01:CDS |
| GAGTACTGCAACAAATGGCT+GGG | 0.651398 | 3:-101028688 | MsG0380017823.01.T01:CDS |
| AGTTGGGACAATTCCACCAG+AGG | 0.659695 | 3:-101027587 | MsG0380017823.01.T01:CDS |
| GCGGAGCTGAGTAAAGGGAA+GGG | 0.669522 | 3:+101027302 | None:intergenic |
| GCAACTACAGCTACAACCAG+CGG | 0.670400 | 3:-101027337 | MsG0380017823.01.T01:CDS |
| GCTGCCATGAAAGCATTGAG+CGG | 0.695869 | 3:+101027283 | None:intergenic |
| GTGAGAGTGAGTTCATTGGA+CGG | 0.712874 | 3:-101027535 | MsG0380017823.01.T01:CDS |
| GGAATGAATTGTCAGGACTG+TGG | 0.748727 | 3:-101028435 | MsG0380017823.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATAGTTATAATGA+TGG | - | Chr3:101028294-101028313 | MsG0380017823.01.T01:CDS | 10.0% |
| !! | CTATACATACATATATATAT+AGG | - | Chr3:101027872-101027891 | MsG0380017823.01.T01:intron | 15.0% |
| !! | TTACAATAATTATATACCTG+TGG | + | Chr3:101027818-101027837 | None:intergenic | 20.0% |
| !! | TTCATGATTGATGTATATAT+AGG | - | Chr3:101027987-101028006 | MsG0380017823.01.T01:intron | 20.0% |
| ! | AAAACAGTAACAAGTTATGA+TGG | + | Chr3:101028171-101028190 | None:intergenic | 25.0% |
| ! | AAATCATCGTATACTAGTTA+AGG | + | Chr3:101028110-101028129 | None:intergenic | 25.0% |
| ! | AATAATTATATACCTGTGGT+AGG | + | Chr3:101027814-101027833 | None:intergenic | 25.0% |
| ! | AGAATTATTGTTAAGAAACG+AGG | - | Chr3:101027386-101027405 | MsG0380017823.01.T01:CDS | 25.0% |
| ! | ATAATTATATACCTGTGGTA+GGG | + | Chr3:101027813-101027832 | None:intergenic | 25.0% |
| !! | AAAGAAGATTTGGTATAATG+AGG | - | Chr3:101027523-101027542 | MsG0380017823.01.T01:CDS | 25.0% |
| !! | AATGATGGAAATACTAATAG+AGG | - | Chr3:101028309-101028328 | MsG0380017823.01.T01:CDS | 25.0% |
| !! | GTATACGATGATTTTGAATA+TGG | - | Chr3:101028116-101028135 | MsG0380017823.01.T01:intron | 25.0% |
| !! | GTTTTACTTAAAAACAGTGA+TGG | + | Chr3:101028224-101028243 | None:intergenic | 25.0% |
| AAAGGAATTCTCTATGATCA+AGG | - | Chr3:101028536-101028555 | MsG0380017823.01.T01:CDS | 30.0% | |
| ATATGTATGTATAGCTAGCT+AGG | + | Chr3:101027866-101027885 | None:intergenic | 30.0% | |
| GTATAGCTGAAAATTCTTCA+TGG | + | Chr3:101028014-101028033 | None:intergenic | 30.0% | |
| TATGTATGTATAGCTAGCTA+GGG | + | Chr3:101027865-101027884 | None:intergenic | 30.0% | |
| TGACGAACTCATCAAATTAT+TGG | - | Chr3:101028244-101028263 | MsG0380017823.01.T01:CDS | 30.0% | |
| TTGAACATTTACAATGCGTT+TGG | - | Chr3:101027453-101027472 | MsG0380017823.01.T01:CDS | 30.0% | |
| ! | TTAAAAACAGTGATGGAGAA+TGG | + | Chr3:101028217-101028236 | None:intergenic | 30.0% |
| !! | AAACACATGTTAAGAGTACT+TGG | - | Chr3:101027649-101027668 | MsG0380017823.01.T01:intron | 30.0% |
| !! | AACACATGTTAAGAGTACTT+GGG | - | Chr3:101027650-101027669 | MsG0380017823.01.T01:intron | 30.0% |
| !! | AATTTTCTGACTGCTACTTA+GGG | - | Chr3:101028376-101028395 | MsG0380017823.01.T01:CDS | 30.0% |
| !! | TAAATGTTCAAGCTTTGTTG+TGG | + | Chr3:101027444-101027463 | None:intergenic | 30.0% |
| !!! | CAATGCATTTTTTCATTAGC+AGG | + | Chr3:101028050-101028069 | None:intergenic | 30.0% |
| ACAACAAAGGGTTAGAGATA+TGG | - | Chr3:101027418-101027437 | MsG0380017823.01.T01:CDS | 35.0% | |
| AGGAGATCTGTAACAACAAA+GGG | - | Chr3:101027406-101027425 | MsG0380017823.01.T01:CDS | 35.0% | |
| ATACTGGTGTAAAGATTTGG+AGG | + | Chr3:101028563-101028582 | None:intergenic | 35.0% | |
| GATCATGGAGACATTACAAA+CGG | - | Chr3:101027735-101027754 | MsG0380017823.01.T01:intron | 35.0% | |
| GATGAGTGTGAAAGAAGATT+TGG | - | Chr3:101027513-101027532 | MsG0380017823.01.T01:CDS | 35.0% | |
| GCAATACTGGTGTAAAGATT+TGG | + | Chr3:101028566-101028585 | None:intergenic | 35.0% | |
| GGTTATTTGTCTAGGTAGAA+AGG | - | Chr3:101027323-101027342 | MsG0380017823.01.T01:CDS | 35.0% | |
| ! | GTCATGAAATCAAGTTGTTG+AGG | + | Chr3:101028626-101028645 | None:intergenic | 35.0% |
| ! | TTGTTGAGTACTGCAACAAA+TGG | - | Chr3:101027297-101027316 | MsG0380017823.01.T01:CDS | 35.0% |
| !! | CAAGTTATGATGGATAACCA+TGG | + | Chr3:101028161-101028180 | None:intergenic | 35.0% |
| !! | GAATTTTCTGACTGCTACTT+AGG | - | Chr3:101028375-101028394 | MsG0380017823.01.T01:CDS | 35.0% |
| AATGGCTGGGTTATTTGTCT+AGG | - | Chr3:101027315-101027334 | MsG0380017823.01.T01:CDS | 40.0% | |
| ACCAGTATTGCACCTATTGA+AGG | - | Chr3:101028575-101028594 | MsG0380017823.01.T01:CDS | 40.0% | |
| ACCTTCAATAGGTGCAATAC+TGG | + | Chr3:101028579-101028598 | None:intergenic | 40.0% | |
| AGAATGGAAAGAAGATAGCG+AGG | + | Chr3:101028201-101028220 | None:intergenic | 40.0% | |
| AGAGATGTTGTTGTCGTTCA+CGG | + | Chr3:101027692-101027711 | None:intergenic | 40.0% | |
| CATTTACAATGCGTTTGGAG+CGG | - | Chr3:101027458-101027477 | MsG0380017823.01.T01:CDS | 40.0% | |
| CGGCACACAGAAATTAATCA+AGG | - | Chr3:101027755-101027774 | MsG0380017823.01.T01:intron | 40.0% | |
| GAATGGAAAGAAGATAGCGA+GGG | + | Chr3:101028200-101028219 | None:intergenic | 40.0% | |
| GAGGAGATCTGTAACAACAA+AGG | - | Chr3:101027405-101027424 | MsG0380017823.01.T01:CDS | 40.0% | |
| TAGTGGAGGAATGAATTGTC+AGG | - | Chr3:101027548-101027567 | MsG0380017823.01.T01:CDS | 40.0% | |
| TATATACCTGTGGTAGGGAT+GGG | + | Chr3:101027808-101027827 | None:intergenic | 40.0% | |
| TATCAAACGGCTGTGAACAT+AGG | - | Chr3:101028500-101028519 | MsG0380017823.01.T01:CDS | 40.0% | |
| TTATATACCTGTGGTAGGGA+TGG | + | Chr3:101027809-101027828 | None:intergenic | 40.0% | |
| TTTGAATATGGAACCCCACT+TGG | - | Chr3:101028128-101028147 | MsG0380017823.01.T01:intron | 40.0% | |
| TTTGGTATAATGAGGCGTAG+TGG | - | Chr3:101027531-101027550 | MsG0380017823.01.T01:CDS | 40.0% | |
| ! | ATTTACAATGCGTTTGGAGC+GGG | - | Chr3:101027459-101027478 | MsG0380017823.01.T01:CDS | 40.0% |
| !! | ATAGGAGGGCATGTTTTCAA+AGG | - | Chr3:101028518-101028537 | MsG0380017823.01.T01:CDS | 40.0% |
| AAACGGCTGTGAACATAGGA+GGG | - | Chr3:101028504-101028523 | MsG0380017823.01.T01:CDS | 45.0% | |
| AACCATGGATCCAATCCAAG+TGG | + | Chr3:101028146-101028165 | None:intergenic | 45.0% | |
| ACCATGGATCCAATCCAAGT+GGG | + | Chr3:101028145-101028164 | None:intergenic | 45.0% | |
| AGTAAAGGGAAGGGTCGAAT+GGG | + | Chr3:101028682-101028701 | None:intergenic | 45.0% | |
| ATATGGAACCCCACTTGGAT+TGG | - | Chr3:101028133-101028152 | MsG0380017823.01.T01:intron | 45.0% | |
| ATTGAAGGTTCTTCTGGTGG+AGG | - | Chr3:101028590-101028609 | MsG0380017823.01.T01:CDS | 45.0% | |
| ATTGAGCGGAGCTGAGTAAA+GGG | + | Chr3:101028696-101028715 | None:intergenic | 45.0% | |
| CCACCAGAAGAACCTTCAAT+AGG | + | Chr3:101028590-101028609 | None:intergenic | 45.0% | |
| CCTATTGAAGGTTCTTCTGG+TGG | - | Chr3:101028587-101028606 | MsG0380017823.01.T01:CDS | 45.0% | |
| GCACCTATTGAAGGTTCTTC+TGG | - | Chr3:101028584-101028603 | MsG0380017823.01.T01:CDS | 45.0% | |
| GGAATGAATTGTCAGGACTG+TGG | - | Chr3:101027555-101027574 | MsG0380017823.01.T01:CDS | 45.0% | |
| GTGAGAGTGAGTTCATTGGA+CGG | - | Chr3:101028455-101028474 | MsG0380017823.01.T01:CDS | 45.0% | |
| GTGTGTGAGAGTGAGTTCAT+TGG | - | Chr3:101028451-101028470 | MsG0380017823.01.T01:CDS | 45.0% | |
| GTTCTCCAGGAGTAACGTTT+CGG | - | Chr3:101028429-101028448 | MsG0380017823.01.T01:CDS | 45.0% | |
| TGAGCAATGCGCGTATCAAA+CGG | - | Chr3:101028487-101028506 | MsG0380017823.01.T01:CDS | 45.0% | |
| ! | GAGTACTGCAACAAATGGCT+GGG | - | Chr3:101027302-101027321 | MsG0380017823.01.T01:CDS | 45.0% |
| ! | TGAGTACTGCAACAAATGGC+TGG | - | Chr3:101027301-101027320 | MsG0380017823.01.T01:CDS | 45.0% |
| ! | TGCTACTTAGGGTTGGAGTT+GGG | - | Chr3:101028387-101028406 | MsG0380017823.01.T01:CDS | 45.0% |
| ! | TTCTGACTGCTACTTAGGGT+TGG | - | Chr3:101028380-101028399 | MsG0380017823.01.T01:CDS | 45.0% |
| !! | AGAACTTGTTGCAAGAGTCG+AGG | - | Chr3:101027615-101027634 | MsG0380017823.01.T01:intron | 45.0% |
| !! | GAACTTGTTGCAAGAGTCGA+GGG | - | Chr3:101027616-101027635 | MsG0380017823.01.T01:intron | 45.0% |
| ACACACCGAAACGTTACTCC+TGG | + | Chr3:101028437-101028456 | None:intergenic | 50.0% | |
| AGCTCCGCTCAATGCTTTCA+TGG | - | Chr3:101028703-101028722 | MsG0380017823.01.T01:CDS | 50.0% | |
| AGTTGGGACAATTCCACCAG+AGG | - | Chr3:101028403-101028422 | MsG0380017823.01.T01:CDS | 50.0% | |
| CAAACGGCTGTGAACATAGG+AGG | - | Chr3:101028503-101028522 | MsG0380017823.01.T01:CDS | 50.0% | |
| CATTGAGCGGAGCTGAGTAA+AGG | + | Chr3:101028697-101028716 | None:intergenic | 50.0% | |
| CCATGATCTCGACGACGAAA+CGG | + | Chr3:101027723-101027742 | None:intergenic | 50.0% | |
| CCATGGATCCAATCCAAGTG+GGG | + | Chr3:101028144-101028163 | None:intergenic | 50.0% | |
| GAGTAAAGGGAAGGGTCGAA+TGG | + | Chr3:101028683-101028702 | None:intergenic | 50.0% | |
| GCAACTACAGCTACAACCAG+CGG | - | Chr3:101028653-101028672 | MsG0380017823.01.T01:CDS | 50.0% | |
| GGTATAATGAGGCGTAGTGG+AGG | - | Chr3:101027534-101027553 | MsG0380017823.01.T01:CDS | 50.0% | |
| TACGCGCATTGCTCATGATC+TGG | + | Chr3:101028482-101028501 | None:intergenic | 50.0% | |
| ! | CTGCTACTTAGGGTTGGAGT+TGG | - | Chr3:101028386-101028405 | MsG0380017823.01.T01:CDS | 50.0% |
| !! | GCTGCCATGAAAGCATTGAG+CGG | + | Chr3:101028710-101028729 | None:intergenic | 50.0% |
| ACTCCTGGAGAACTCACCTC+TGG | + | Chr3:101028422-101028441 | None:intergenic | 55.0% | |
| AGCGGAGCTGAGTAAAGGGA+AGG | + | Chr3:101028692-101028711 | None:intergenic | 55.0% | |
| CCGTTTCGTCGTCGAGATCA+TGG | - | Chr3:101027720-101027739 | MsG0380017823.01.T01:intron | 55.0% | |
| GCGGAGCTGAGTAAAGGGAA+GGG | + | Chr3:101028691-101028710 | None:intergenic | 55.0% | |
| GTGTTGAGGGCAAGGAAGAG+AGG | + | Chr3:101027786-101027805 | None:intergenic | 55.0% | |
| TCAACACCCATCCCTACCAC+AGG | - | Chr3:101027799-101027818 | MsG0380017823.01.T01:intron | 55.0% | |
| TCGTTCACGGCGTTTAGCAG+CGG | + | Chr3:101027679-101027698 | None:intergenic | 55.0% | |
| ! | CCCCACTTGGATTGGATCCA+TGG | - | Chr3:101028141-101028160 | MsG0380017823.01.T01:intron | 55.0% |
| ! | TGTGGTAGGGATGGGTGTTG+AGG | + | Chr3:101027800-101027819 | None:intergenic | 55.0% |
| !! | GTGGTAGGGATGGGTGTTGA+GGG | + | Chr3:101027799-101027818 | None:intergenic | 55.0% |
| AGGGTCGAATGGGATACCGC+TGG | + | Chr3:101028672-101028691 | None:intergenic | 60.0% | |
| CCACCAGAGGTGAGTTCTCC+AGG | - | Chr3:101028416-101028435 | MsG0380017823.01.T01:CDS | 60.0% | |
| CCTGGAGAACTCACCTCTGG+TGG | + | Chr3:101028419-101028438 | None:intergenic | 60.0% | |
| CGTTCACGGCGTTTAGCAGC+GGG | + | Chr3:101027678-101027697 | None:intergenic | 60.0% | |
| !! | AGGGATGGGTGTTGAGGGCA+AGG | + | Chr3:101027794-101027813 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 101027282 | 101028730 | 101027282 | ID=MsG0380017823.01;Name=MsG0380017823.01 |
| Chr3 | mRNA | 101027282 | 101028730 | 101027282 | ID=MsG0380017823.01.T01;Parent=MsG0380017823.01;Name=MsG0380017823.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|0.5|2|0|291 |
| Chr3 | exon | 101028192 | 101028730 | 101028192 | ID=MsG0380017823.01.T01:exon:2884;Parent=MsG0380017823.01.T01 |
| Chr3 | exon | 101027282 | 101027615 | 101027282 | ID=MsG0380017823.01.T01:exon:2883;Parent=MsG0380017823.01.T01 |
| Chr3 | CDS | 101028192 | 101028730 | 101028192 | ID=MsG0380017823.01.T01:cds;Parent=MsG0380017823.01.T01 |
| Chr3 | CDS | 101027282 | 101027615 | 101027282 | ID=MsG0380017823.01.T01:cds;Parent=MsG0380017823.01.T01 |
| Gene Sequence |
| Protein sequence |
