AlfalfaGEDB | MsG0380017823.01

M. sativa cultivar ZhongmuNo.1 / MsG0380017823.01

KEGG: -
GO: -
PFAM: PF05142

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017823.01.T01	XP_013462189.1	83.916	286	31	3	15	291	4	283	2.53E-159	455

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017823.01.T01	Q9FXH7	42.424	330	117	17	20	290	19	334	3.92E-59	195

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017823.01.T01	A0A072V2G0	83.916	286	31	3	15	291	4	283	1.21e-159	455

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TFs/TRs:

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Gene ID	Type	Classification
MsG0380017823.01.T01	TF	SRS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048357.01	MsG0380017823.01	0.800570	1.354866e-48	6.329635e-46
MsG0180001771.01	MsG0380017823.01	0.823747	1.172400e-53	1.018483e-50
MsG0280007305.01	MsG0380017823.01	0.844442	7.539260e-59	1.217275e-55
MsG0280007414.01	MsG0380017823.01	0.801704	7.942494e-49	3.818494e-46
MsG0380017823.01	MsG0580029417.01	0.803670	3.119895e-49	1.577151e-46
MsG0380017823.01	MsG0580029418.01	0.835712	1.430041e-56	1.763251e-53
MsG0380017823.01	MsG0680031707.01	0.823914	1.071782e-53	9.353649e-51
MsG0380017823.01	MsG0780040966.01	0.833252	5.934644e-56	6.796551e-53
MsG0380017823.01	MsG0780041676.01	0.813003	3.189203e-51	2.058227e-48
MsG0380017823.01	MsG0880042958.01	0.800034	1.741851e-48	8.027659e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017823.01.T01	MTR_3g112510	83.916	286	31	3	15	291	4	283	3.07e-163	455
MsG0380017823.01.T01	MTR_8g076620	49.367	237	94	7	68	291	97	320	1.28e-58	191
MsG0380017823.01.T01	MTR_5g021130	38.679	318	145	12	15	291	4	312	9.21e-49	165
MsG0380017823.01.T01	MTR_1g023230	45.098	204	61	7	36	194	32	229	2.00e-33	123
MsG0380017823.01.T01	MTR_4g071110	43.558	163	58	6	92	246	14	150	2.34e-33	123
MsG0380017823.01.T01	MTR_5g089750	44.304	158	71	4	95	237	249	404	2.61e-32	124
MsG0380017823.01.T01	MTR_8g039110	36.842	209	95	8	95	275	124	323	5.92e-30	115
MsG0380017823.01.T01	MTR_3g014660	40.373	161	67	6	95	234	134	286	9.25e-28	109
MsG0380017823.01.T01	MTR_0363s0040	75.556	45	11	0	95	139	124	168	4.26e-19	84.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017823.01.T01	AT1G19790	42.424	330	117	17	20	290	19	334	3.99e-60	195
MsG0380017823.01.T01	AT1G19790	42.424	330	117	17	20	290	19	334	3.99e-60	195
MsG0380017823.01.T01	AT1G75520	37.989	358	120	12	13	291	3	337	7.86e-57	186
MsG0380017823.01.T01	AT5G66350	48.148	216	80	7	95	291	120	322	7.74e-52	173
MsG0380017823.01.T01	AT5G66350	48.598	214	78	7	95	289	120	320	8.17e-52	173
MsG0380017823.01.T01	AT5G66350	48.148	216	80	7	95	291	120	322	8.44e-52	173
MsG0380017823.01.T01	AT3G51060	45.887	231	80	9	93	290	142	360	1.23e-46	160
MsG0380017823.01.T01	AT4G36260	49.102	167	56	4	89	235	88	245	1.99e-41	145
MsG0380017823.01.T01	AT2G18120	43.284	201	83	8	41	237	32	205	3.56e-39	137
MsG0380017823.01.T01	AT2G21400	50.336	149	49	5	86	234	1	124	9.15e-39	134

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Find 75 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACATGTTAAGAGTACT+TGG	0.440077	3:-101028341	MsG0380017823.01.T01:CDS
AAACGGCTGTGAACATAGGA+GGG	0.648226	3:-101027486	MsG0380017823.01.T01:CDS
AAAGAAGATTTGGTATAATG+AGG	0.534847	3:-101028467	MsG0380017823.01.T01:CDS
AAAGGAATTCTCTATGATCA+AGG	0.458943	3:-101027454	MsG0380017823.01.T01:CDS
AACACATGTTAAGAGTACTT+GGG	0.648062	3:-101028340	MsG0380017823.01.T01:CDS
AATAATTATATACCTGTGGT+AGG	0.506589	3:+101028179	None:intergenic
AATGGCTGGGTTATTTGTCT+AGG	0.511851	3:-101028675	MsG0380017823.01.T01:CDS
ACAACAAAGGGTTAGAGATA+TGG	0.454400	3:-101028572	MsG0380017823.01.T01:CDS
ACACACCGAAACGTTACTCC+TGG	0.517806	3:+101027556	None:intergenic
ACCAGTATTGCACCTATTGA+AGG	0.434447	3:-101027415	MsG0380017823.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGAATTCTCTATGATCA+AGG	-	Chr3:101028536-101028555	MsG0380017823.01.T01:CDS	30.0%
ATATGTATGTATAGCTAGCT+AGG	+	Chr3:101027866-101027885	None:intergenic	30.0%
GTATAGCTGAAAATTCTTCA+TGG	+	Chr3:101028014-101028033	None:intergenic	30.0%
TATGTATGTATAGCTAGCTA+GGG	+	Chr3:101027865-101027884	None:intergenic	30.0%
TGACGAACTCATCAAATTAT+TGG	-	Chr3:101028244-101028263	MsG0380017823.01.T01:CDS	30.0%
TTGAACATTTACAATGCGTT+TGG	-	Chr3:101027453-101027472	MsG0380017823.01.T01:CDS	30.0%
ACAACAAAGGGTTAGAGATA+TGG	-	Chr3:101027418-101027437	MsG0380017823.01.T01:CDS	35.0%
AGGAGATCTGTAACAACAAA+GGG	-	Chr3:101027406-101027425	MsG0380017823.01.T01:CDS	35.0%
ATACTGGTGTAAAGATTTGG+AGG	+	Chr3:101028563-101028582	None:intergenic	35.0%
GATCATGGAGACATTACAAA+CGG	-	Chr3:101027735-101027754	MsG0380017823.01.T01:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	101027282	101028730	101027282	ID=MsG0380017823.01;Name=MsG0380017823.01
Chr3	mRNA	101027282	101028730	101027282	ID=MsG0380017823.01.T01;Parent=MsG0380017823.01;Name=MsG0380017823.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|0\|0\|1\|1\|0.5\|2\|0\|291
Chr3	exon	101028192	101028730	101028192	ID=MsG0380017823.01.T01:exon:2884;Parent=MsG0380017823.01.T01
Chr3	exon	101027282	101027615	101027282	ID=MsG0380017823.01.T01:exon:2883;Parent=MsG0380017823.01.T01
Chr3	CDS	101028192	101028730	101028192	ID=MsG0380017823.01.T01:cds;Parent=MsG0380017823.01.T01
Chr3	CDS	101027282	101027615	101027282	ID=MsG0380017823.01.T01:cds;Parent=MsG0380017823.01.T01

Gene Sequence

>MsG0380017823.01.T01

ATGGATGATATAATATTGTTGAGTACTGCAACAAATGGCTGGGTTATTTGTCTAGGTAGAAAGGAAGATCAAAAAGAAGATAAATTAGATTATTATAGTAATAAAGAATTATTGTTAAGAAACGAGGAGATCTGTAACAACAAAGGGTTAGAGATATGGCCACAACAAAGCTTGAACATTTACAATGCGTTTGGAGCGGGTCATAGTAGTAGTAGCAGAAATTCTTCGTTTGATGAGTGTGAAAGAAGATTTGGTATAATGAGGCGTAGTGGAGGAATGAATTGTCAGGACTGTGGTAATCAAGCAAAGAAAGATTGTATACATCTAAGATGCAGAACTTGTTGCAAGAGTCGAGGGTTTCAGTGTCAAACACATGTTAAGAGTACTTGGGTTCCCGCTGCTAAACGCCGTGAACGACAACAACATCTCTCTGCGTTACCGTTTCGTCGTCGAGATCATGGAGACATTACAAACGGCACACAGAAATTAATCAAGGTGCTACCTCTCTTCCTTGCCCTCAACACCCATCCCTACCACAGGGTTGGAGTTGGGACAATTCCACCAGAGGTGAGTTCTCCAGGAGTAACGTTTCGGTGTGTGAGAGTGAGTTCATTGGACGGTCCAGATCATGAGCAATGCGCGTATCAAACGGCTGTGAACATAGGAGGGCATGTTTTCAAAGGAATTCTCTATGATCAAGGTCCTCCAAATCTTTACACCAGTATTGCACCTATTGAAGGTTCTTCTGGTGGAGGTCATCATCAACCTCAACAACTTGATTTCATGACTGCAACAGCAACTACAGCTACAACCAGCGGTATCCCATTCGACCCTTCCCTTTACTCAGCTCCGCTCAATGCTTTCATGGCAGCT

Protein sequence

>MsG0380017823.01.T01

MDDIILLSTATNGWVICLGRKEDQKEDKLDYYSNKELLLRNEEICNNKGLEIWPQQSLNIYNAFGAGHSSSSRNSSFDECERRFGIMRRSGGMNCQDCGNQAKKDCIHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQHLSALPFRRRDHGDITNGTQKLIKVLPLFLALNTHPYHRVGVGTIPPEVSSPGVTFRCVRVSSLDGPDHEQCAYQTAVNIGGHVFKGILYDQGPPNLYTSIAPIEGSSGGGHHQPQQLDFMTATATTATTSGIPFDPSLYSAPLNAFMAA