AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031707.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031707.01.T01 MTR_6g032965 85.075 134 19 1 15 147 1 134 1.31e-73 227
MsG0680031707.01.T01 MTR_6g032965 95.349 43 2 0 144 186 351 393 2.29e-22 92.8
MsG0680031707.01.T01 MTR_1g076430 54.545 143 64 1 6 147 114 256 4.07e-46 158
MsG0680031707.01.T01 MTR_2g054940 55.072 138 61 1 11 147 118 255 4.70e-46 158
MsG0680031707.01.T01 MTR_1g041085 54.745 137 61 1 12 147 126 262 6.50e-43 150
MsG0680031707.01.T01 MTR_4g054415 51.773 141 67 1 8 147 34 174 4.02e-41 144
MsG0680031707.01.T01 MTR_4g054630 51.773 141 67 1 8 147 75 215 6.83e-41 144
MsG0680031707.01.T01 MTR_6g074880 46.835 158 81 3 10 166 79 234 7.49e-41 144
MsG0680031707.01.T01 MTR_7g081695 50.365 137 57 1 11 147 118 243 2.91e-38 139
MsG0680031707.01.T01 MTR_4g113280 48.551 138 59 2 11 147 107 233 1.53e-36 132
MsG0680031707.01.T01 MTR_4g070270 51.880 133 63 1 16 147 121 253 3.64e-36 131
MsG0680031707.01.T01 MTR_3g105550 45.652 138 73 2 12 147 140 277 1.81e-34 127
MsG0680031707.01.T01 MTR_7g118170 48.872 133 64 2 16 147 146 275 4.07e-32 121
MsG0680031707.01.T01 MTR_1g110930 48.361 122 62 1 27 147 120 241 2.91e-30 115
MsG0680031707.01.T01 MTR_5g056510 48.760 121 61 1 27 146 120 240 9.55e-30 114
MsG0680031707.01.T01 MTR_2g013740 36.879 141 88 1 7 146 124 264 9.65e-25 100
MsG0680031707.01.T01 MTR_2g007020 39.823 113 67 1 36 147 89 201 1.44e-21 91.3
MsG0680031707.01.T01 MTR_2g436480 34.694 147 89 2 8 147 54 200 5.79e-20 86.7
MsG0680031707.01.T01 MTR_1g102290 35.915 142 90 1 7 147 94 235 6.24e-20 86.7
MsG0680031707.01.T01 MTR_4g054265 48.810 84 42 1 8 90 34 117 3.49e-18 76.6
MsG0680031707.01.T01 MTR_3g072980 36.585 123 77 1 26 147 114 236 2.05e-17 79.3
MsG0680031707.01.T01 MTR_3g072940 36.585 123 77 1 26 147 114 236 2.05e-17 79.3
MsG0680031707.01.T01 MTR_1g115560 36.641 131 76 3 19 146 59 185 3.22e-17 79.0
MsG0680031707.01.T01 MTR_6g051440 39.024 123 74 1 26 147 113 235 2.49e-15 73.6
MsG0680031707.01.T01 MTR_2g096210 33.766 154 84 5 26 171 64 207 7.11e-15 72.0
MsG0680031707.01.T01 MTR_4g062190 32.026 153 85 6 3 145 40 183 3.27e-14 70.1
MsG0680031707.01.T01 MTR_7g118160 32.836 134 54 2 14 147 75 172 6.02e-14 69.3
MsG0680031707.01.T01 MTR_4g062170 31.373 153 86 6 3 145 40 183 2.79e-13 67.4
MsG0680031707.01.T01 MTR_4g062270 28.571 147 98 5 3 145 40 183 3.15e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031707.01.T01 AT5G43760 56.115 139 60 1 10 147 126 264 3.34e-47 161
MsG0680031707.01.T01 AT1G04220 54.930 142 63 1 7 147 117 258 7.73e-47 160
MsG0680031707.01.T01 AT2G26640 57.353 136 57 1 11 145 116 251 1.04e-45 157
MsG0680031707.01.T01 AT2G16280 47.403 154 78 2 14 166 127 278 4.58e-38 137
MsG0680031707.01.T01 AT2G26250 48.175 137 70 1 12 147 138 274 1.93e-37 135
MsG0680031707.01.T01 AT1G19440 52.632 133 62 1 16 147 133 265 7.45e-37 134
MsG0680031707.01.T01 AT4G34510 52.033 123 58 1 26 147 113 235 9.46e-34 125
MsG0680031707.01.T01 AT2G46720 42.466 146 82 2 3 147 69 213 6.23e-33 122
MsG0680031707.01.T01 AT1G01120 44.800 125 68 1 24 147 151 275 1.74e-31 119
MsG0680031707.01.T01 AT1G68530 52.212 113 53 1 36 147 130 242 4.73e-31 116
MsG0680031707.01.T01 AT4G34520 50.394 127 61 2 29 154 121 246 1.69e-30 116
MsG0680031707.01.T01 AT1G68530 52.212 113 53 1 36 147 130 242 2.01e-30 116
MsG0680031707.01.T01 AT3G52160 45.455 132 70 2 24 154 4 134 4.31e-29 110
MsG0680031707.01.T01 AT1G25450 49.180 122 61 1 27 147 116 237 4.52e-29 112
MsG0680031707.01.T01 AT3G52160 43.750 144 79 2 12 154 105 247 6.31e-29 111
MsG0680031707.01.T01 AT2G15090 50.370 135 61 3 19 147 96 230 2.65e-28 110
MsG0680031707.01.T01 AT4G34250 48.872 133 66 2 36 167 126 257 8.66e-27 106
MsG0680031707.01.T01 AT3G10280 39.041 146 80 3 3 147 69 206 7.26e-26 103
MsG0680031707.01.T01 AT1G71160 35.172 145 90 2 24 164 76 220 1.23e-22 94.4
MsG0680031707.01.T01 AT5G49070 33.803 142 91 2 26 166 82 221 1.93e-20 87.0
MsG0680031707.01.T01 AT5G49070 36.585 123 77 1 26 147 82 204 6.74e-20 86.7
MsG0680031707.01.T01 AT5G04530 39.716 141 74 6 11 146 54 188 7.40e-19 83.6
MsG0680031707.01.T01 AT2G28630 32.653 147 92 5 3 145 40 183 6.12e-17 78.2
MsG0680031707.01.T01 AT2G28630 32.653 147 92 5 3 145 40 183 6.12e-17 78.2
MsG0680031707.01.T01 AT1G07720 35.385 130 79 4 19 146 58 184 1.38e-16 77.0
MsG0680031707.01.T01 AT1G07720 35.385 130 79 4 19 146 101 227 1.41e-16 77.0

Find 37 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGATCAAATTAGTTCTTT+TGG 0.212566 6:+25046303 MsG0680031707.01.T01:CDS
GTTAATCATTATAAACTTAG+AGG 0.246655 6:+25046435 MsG0680031707.01.T01:CDS
TTGGATAGAGCAAAACATTT+TGG 0.264127 6:+25046153 MsG0680031707.01.T01:CDS
GGAATTTCTAATAATGCTTC+AGG 0.313917 6:-25046252 None:intergenic
ATCTACTAGGTATATTTGTT+TGG 0.331716 6:-25046077 None:intergenic
AAAGTTGAAGCTAAAGATAT+TGG 0.336152 6:+25046354 MsG0680031707.01.T01:CDS
TTGTTCATTGGCAATGGAAC+AGG 0.342492 6:-25049178 None:intergenic
TAGAAATGCTTCAACATTGT+TGG 0.353388 6:-25045885 None:intergenic
TTAATCATATGTTTGTTCAT+TGG 0.363214 6:-25049190 None:intergenic
TTGCACAAAAGAAATGTTGT+TGG 0.390520 6:+25046134 MsG0680031707.01.T01:CDS
GATCTATAATCTTAGTGGTA+TGG 0.390916 6:+25046467 MsG0680031707.01.T01:CDS
AATATCTTTAGCTTCAACTT+TGG 0.416100 6:-25046352 None:intergenic
TTAAGGTTAATACTGCTGTT+TGG 0.420779 6:+25049089 MsG0680031707.01.T01:intron
ATCTATAATCTTAGTGGTAT+GGG 0.428495 6:+25046468 MsG0680031707.01.T01:CDS
TTTATCAATATTGATGGTTG+AGG 0.454477 6:-25046005 None:intergenic
TCATCAAGTGTTAGTCTTGG+TGG 0.459635 6:-25046273 None:intergenic
AAATACCTCAAGAAGACGTT+TGG 0.460466 6:-25046523 None:intergenic
AGTGGTATGGGATGCAGTGC+TGG 0.470681 6:+25046480 MsG0680031707.01.T01:CDS
ATATGTTTGTTCATTGGCAA+TGG 0.471516 6:-25049184 None:intergenic
GCTTCATCAAGTGTTAGTCT+TGG 0.477201 6:-25046276 None:intergenic
CATGAAAATGTAGTAAACTA+AGG 0.486928 6:-25046048 None:intergenic
TGTGACATGCAAAATCTACT+AGG 0.521489 6:-25046090 None:intergenic
TTAATCATTATAAACTTAGA+GGG 0.532074 6:+25046436 MsG0680031707.01.T01:CDS
TGCTTCAGGAACATAAGTGA+TGG 0.543655 6:-25046238 None:intergenic
ATGTTGTTGAAAGGATAGCT+AGG 0.550736 6:-25045846 None:intergenic
TAAAGATATTGGAATTCTTG+TGG 0.557701 6:+25046365 MsG0680031707.01.T01:CDS
GACTAACACTTGATGAAGCA+AGG 0.570909 6:+25046280 MsG0680031707.01.T01:CDS
GTAGTAGCTACATCATGTGT+AGG 0.584328 6:+25045953 MsG0680031707.01.T01:five_prime_UTR
TATCTGAAAGTGATGGTGGT+AGG 0.586194 6:-25046408 None:intergenic
CAGTGCTGGTGTTATTGCAG+TGG 0.587920 6:+25046494 MsG0680031707.01.T01:CDS
TGTTCATTGGCAATGGAACA+GGG 0.590457 6:-25049177 None:intergenic
TGTGTGTGAATGTTGTTGAA+AGG 0.595264 6:-25045855 None:intergenic
CTTTGCCAAACGTCTTCTTG+AGG 0.595847 6:+25046518 MsG0680031707.01.T01:CDS
GCTTCAGGAACATAAGTGAT+GGG 0.600651 6:-25046237 None:intergenic
TGTTGTTGAAAGGATAGCTA+GGG 0.605509 6:-25045845 None:intergenic
AACATAGTATCTGAAAGTGA+TGG 0.626569 6:-25046415 None:intergenic
ATAGTATCTGAAAGTGATGG+TGG 0.666132 6:-25046412 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAATATAAAAGAGT+GGG + Chr6:25047134-25047153 MsG0680031707.01.T01:intron 10.0%
!! TTAAAAAAAATATAAAAGAG+TGG + Chr6:25047133-25047152 MsG0680031707.01.T01:intron 10.0%
!!! AAAAAGTACAAAATTATTTA+AGG + Chr6:25046608-25046627 MsG0680031707.01.T01:intron 10.0%
!!! ATTATTTTTGTTTTTTTTGT+TGG - Chr6:25048075-25048094 None:intergenic 10.0%
!!! TATGTATATGTTATTTTTTT+CGG - Chr6:25047681-25047700 None:intergenic 10.0%
!! AAAAAAAAAATGAAAATGTC+TGG - Chr6:25046758-25046777 None:intergenic 15.0%
!! TTAATCATTATAAACTTAGA+GGG + Chr6:25046436-25046455 MsG0680031707.01.T01:CDS 15.0%
!! TTATATGAGAAAACAATATA+TGG - Chr6:25047911-25047930 None:intergenic 15.0%
!!! AATGATTTTATCAATATTGA+TGG - Chr6:25046014-25046033 None:intergenic 15.0%
!!! ATATTGTTTTCTCATATAAT+TGG + Chr6:25047912-25047931 MsG0680031707.01.T01:intron 15.0%
!!! CACTATTTTTCTTTTTTTTT+TGG - Chr6:25047510-25047529 None:intergenic 15.0%
!!! GTTTGTTAAATTTATTTGTA+GGG - Chr6:25048343-25048362 None:intergenic 15.0%
!!! TATTTTATCTAAAAGGTTAT+TGG + Chr6:25046956-25046975 MsG0680031707.01.T01:intron 15.0%
!!! TGAAGATATTTTATAATTGA+TGG + Chr6:25048190-25048209 MsG0680031707.01.T01:intron 15.0%
!!! TGTTTGTTAAATTTATTTGT+AGG - Chr6:25048344-25048363 None:intergenic 15.0%
!! AAAATAAAATATGCAAGATC+CGG + Chr6:25047635-25047654 MsG0680031707.01.T01:intron 20.0%
!! AAACTATATGAAATTGATGA+TGG - Chr6:25047018-25047037 None:intergenic 20.0%
!! ACCTCTAGTATTAAATATTT+GGG - Chr6:25046807-25046826 None:intergenic 20.0%
!! ATAATCAAGCTTAATTAGTT+AGG - Chr6:25048405-25048424 None:intergenic 20.0%
!! GAGATATCAATATGTATTTA+TGG + Chr6:25047098-25047117 MsG0680031707.01.T01:intron 20.0%
!! GTTAAAAAGGGAATAAAATA+TGG + Chr6:25049044-25049063 MsG0680031707.01.T01:intron 20.0%
!! GTTAATCATTATAAACTTAG+AGG + Chr6:25046435-25046454 MsG0680031707.01.T01:CDS 20.0%
!! TACCTCTAGTATTAAATATT+TGG - Chr6:25046808-25046827 None:intergenic 20.0%
!! TCAGAATCTTAATTCAATAA+TGG - Chr6:25048020-25048039 None:intergenic 20.0%
!! TTAAAAATGTTCTCATATAG+TGG - Chr6:25047873-25047892 None:intergenic 20.0%
!! TTAATCATATGTTTGTTCAT+TGG - Chr6:25049193-25049212 None:intergenic 20.0%
!!! AACTATATGAAATTGATGAT+GGG - Chr6:25047017-25047036 None:intergenic 20.0%
!!! AATGATCAAATTAGTTCTTT+TGG + Chr6:25046303-25046322 MsG0680031707.01.T01:CDS 20.0%
!!! ACAAATAAAAAAAGTGTAGT+TGG + Chr6:25047380-25047399 MsG0680031707.01.T01:intron 20.0%
!!! ACTATTTTATACTTGTTTGT+TGG + Chr6:25046669-25046688 MsG0680031707.01.T01:intron 20.0%
!!! ATTTTGATCTATAATCTTAG+TGG + Chr6:25046462-25046481 MsG0680031707.01.T01:CDS 20.0%
!!! CAAATACAATTGTTTTTTGT+TGG - Chr6:25046117-25046136 None:intergenic 20.0%
!!! CTGCTATTAATTTTTTTTGA+AGG - Chr6:25047079-25047098 None:intergenic 20.0%
!!! GAAGATTTTGCTATTTATTA+TGG + Chr6:25047735-25047754 MsG0680031707.01.T01:intron 20.0%
!!! GGTTTTAGTTGTTTTTTTTT+TGG + Chr6:25047218-25047237 MsG0680031707.01.T01:intron 20.0%
!!! TGATTCATAAGATTTTAGAA+AGG + Chr6:25046202-25046221 MsG0680031707.01.T01:CDS 20.0%
! AAAGTTGAAGCTAAAGATAT+TGG + Chr6:25046354-25046373 MsG0680031707.01.T01:CDS 25.0%
! AAATAAAATATGCAAGATCC+GGG + Chr6:25047636-25047655 MsG0680031707.01.T01:intron 25.0%
! ACATTAGCTGTATTAATTGA+AGG + Chr6:25047420-25047439 MsG0680031707.01.T01:intron 25.0%
! ACCCAAATATTTAATACTAG+AGG + Chr6:25046803-25046822 MsG0680031707.01.T01:intron 25.0%
! AGAATGACACTATATAGATA+TGG + Chr6:25048964-25048983 MsG0680031707.01.T01:intron 25.0%
! ATCTACTAGGTATATTTGTT+TGG - Chr6:25046080-25046099 None:intergenic 25.0%
! ATCTATAATCTTAGTGGTAT+GGG + Chr6:25046468-25046487 MsG0680031707.01.T01:CDS 25.0%
! CATGAAAATGTAGTAAACTA+AGG - Chr6:25046051-25046070 None:intergenic 25.0%
! CTAAATCATTGAAAAATGCT+TGG + Chr6:25049134-25049153 MsG0680031707.01.T01:CDS 25.0%
! GGTTATTTACATATAGCAAA+AGG + Chr6:25047239-25047258 MsG0680031707.01.T01:intron 25.0%
! TAAAGATATTGGAATTCTTG+TGG + Chr6:25046365-25046384 MsG0680031707.01.T01:CDS 25.0%
! TAACTTAAAATTCGCATGTA+TGG - Chr6:25048848-25048867 None:intergenic 25.0%
! TATGTGAAAATTTAGTTGAG+AGG + Chr6:25048798-25048817 MsG0680031707.01.T01:intron 25.0%
! TTATTTATGACATGCAATAC+AGG + Chr6:25048421-25048440 MsG0680031707.01.T01:intron 25.0%
!! AATATCTTTAGCTTCAACTT+TGG - Chr6:25046355-25046374 None:intergenic 25.0%
!! TTTATCAATATTGATGGTTG+AGG - Chr6:25046008-25046027 None:intergenic 25.0%
!!! ATACTGGAAGATACTTTTTT+TGG - Chr6:25047939-25047958 None:intergenic 25.0%
!!! CAAGCATTTTTCAATGATTT+AGG - Chr6:25049136-25049155 None:intergenic 25.0%
!!! TATGTTATTTTTTTCGGTAG+TGG - Chr6:25047675-25047694 None:intergenic 25.0%
AAATTACATGTAGCTAGCAA+GGG - Chr6:25048379-25048398 None:intergenic 30.0%
AACATAGTATCTGAAAGTGA+TGG - Chr6:25046418-25046437 None:intergenic 30.0%
AATAAAATATGCAAGATCCG+GGG + Chr6:25047637-25047656 MsG0680031707.01.T01:intron 30.0%
ACTAATTGTCTCTTTCGAAT+GGG + Chr6:25048528-25048547 MsG0680031707.01.T01:intron 30.0%
AGGGAATAAAATATGGCAAA+TGG + Chr6:25049051-25049070 MsG0680031707.01.T01:intron 30.0%
ATATGTTTGTTCATTGGCAA+TGG - Chr6:25049187-25049206 None:intergenic 30.0%
ATCATTGAAAAATGCTTGGA+TGG + Chr6:25049138-25049157 MsG0680031707.01.T01:CDS 30.0%
CAAATCTCAAGCATATACAA+AGG + Chr6:25048484-25048503 MsG0680031707.01.T01:intron 30.0%
CAATTAGTAAGGATCATTGA+AGG - Chr6:25048516-25048535 None:intergenic 30.0%
GAAGACGAAAAAGAAATACT+CGG + Chr6:25048672-25048691 MsG0680031707.01.T01:intron 30.0%
GATCTATAATCTTAGTGGTA+TGG + Chr6:25046467-25046486 MsG0680031707.01.T01:CDS 30.0%
GGAATTTCTAATAATGCTTC+AGG - Chr6:25046255-25046274 None:intergenic 30.0%
TAAATATTTGGGTCTCTCAA+TGG - Chr6:25046796-25046815 None:intergenic 30.0%
TACTAATTGTCTCTTTCGAA+TGG + Chr6:25048527-25048546 MsG0680031707.01.T01:intron 30.0%
TAGAAATGCTTCAACATTGT+TGG - Chr6:25045888-25045907 None:intergenic 30.0%
TTAAGGTTAATACTGCTGTT+TGG + Chr6:25049089-25049108 MsG0680031707.01.T01:intron 30.0%
TTCGAAAGAGACAATTAGTA+AGG - Chr6:25048527-25048546 None:intergenic 30.0%
TTGCACAAAAGAAATGTTGT+TGG + Chr6:25046134-25046153 MsG0680031707.01.T01:CDS 30.0%
! AAAATATGGCAAATGGCTTT+TGG + Chr6:25049058-25049077 MsG0680031707.01.T01:intron 30.0%
! ACTTGAGTTTTTCCGAAATT+GGG - Chr6:25048779-25048798 None:intergenic 30.0%
! ATTGTCTTATTGTGAAGCTA+AGG + Chr6:25049017-25049036 MsG0680031707.01.T01:intron 30.0%
! CTATATAGTGTCATTCTTGA+AGG - Chr6:25048961-25048980 None:intergenic 30.0%
! TACTTGAGTTTTTCCGAAAT+TGG - Chr6:25048780-25048799 None:intergenic 30.0%
! TGATATTGCTTCTTGTTTGT+CGG + Chr6:25046645-25046664 MsG0680031707.01.T01:intron 30.0%
! TTGGATAGAGCAAAACATTT+TGG + Chr6:25046153-25046172 MsG0680031707.01.T01:CDS 30.0%
! TTGTCTTATTGTGAAGCTAA+GGG + Chr6:25049018-25049037 MsG0680031707.01.T01:intron 30.0%
!! CATAAGATTTTAGAAAGGTC+AGG + Chr6:25046207-25046226 MsG0680031707.01.T01:CDS 30.0%
!! TGAGCTTGATGATTTTCATA+TGG + Chr6:25048933-25048952 MsG0680031707.01.T01:intron 30.0%
AAATACCTCAAGAAGACGTT+TGG - Chr6:25046526-25046545 None:intergenic 35.0%
AAGCTAAGGGAGAGTTAAAA+AGG + Chr6:25049031-25049050 MsG0680031707.01.T01:intron 35.0%
ACACATCATCAAGTTCTGTT+TGG + Chr6:25048989-25049008 MsG0680031707.01.T01:intron 35.0%
AGCACTAAAGCATATGAGTT+GGG - Chr6:25048451-25048470 None:intergenic 35.0%
AGCTAAGGGAGAGTTAAAAA+GGG + Chr6:25049032-25049051 MsG0680031707.01.T01:intron 35.0%
ATAGTATCTGAAAGTGATGG+TGG - Chr6:25046415-25046434 None:intergenic 35.0%
ATGTGCTAAGCTCACTATTA+AGG - Chr6:25048318-25048337 None:intergenic 35.0%
ATGTTGTTGAAAGGATAGCT+AGG - Chr6:25045849-25045868 None:intergenic 35.0%
CAAATTACATGTAGCTAGCA+AGG - Chr6:25048380-25048399 None:intergenic 35.0%
CGTGTGAATTTGTATCATTG+CGG - Chr6:25047801-25047820 None:intergenic 35.0%
GTTTCACTGTCAATCATCAT+AGG + Chr6:25047993-25048012 MsG0680031707.01.T01:intron 35.0%
TAGCACTAAAGCATATGAGT+TGG - Chr6:25048452-25048471 None:intergenic 35.0%
TAGTGGTGAAATAGATACAG+TGG - Chr6:25047856-25047875 None:intergenic 35.0%
TGTGACATGCAAAATCTACT+AGG - Chr6:25046093-25046112 None:intergenic 35.0%
TGTGTGTGAATGTTGTTGAA+AGG - Chr6:25045858-25045877 None:intergenic 35.0%
TGTTGTTGAAAGGATAGCTA+GGG - Chr6:25045848-25045867 None:intergenic 35.0%
! CGATCAATTTTGCATGCATA+CGG + Chr6:25048873-25048892 MsG0680031707.01.T01:intron 35.0%
! GATCAATTTTGCATGCATAC+GGG + Chr6:25048874-25048893 MsG0680031707.01.T01:intron 35.0%
!! ATTTTAGAAAGGTCAGGTGT+GGG + Chr6:25046213-25046232 MsG0680031707.01.T01:CDS 35.0%
!! GCATCAACTGATATTTTGAG+CGG - Chr6:25048594-25048613 None:intergenic 35.0%
!!! TTATTTTTTTCGGTAGTGGC+CGG - Chr6:25047671-25047690 None:intergenic 35.0%
ACCTTAGTCCTACTCAGATA+CGG - Chr6:25047193-25047212 None:intergenic 40.0%
AGGATCTCATGAATGTTGCT+AGG + Chr6:25048709-25048728 MsG0680031707.01.T01:intron 40.0%
CTGTGACTGAACACATATAC+TGG - Chr6:25047955-25047974 None:intergenic 40.0%
GACTAACACTTGATGAAGCA+AGG + Chr6:25046280-25046299 MsG0680031707.01.T01:CDS 40.0%
GCTTCAGGAACATAAGTGAT+GGG - Chr6:25046240-25046259 None:intergenic 40.0%
GGATCTCATGAATGTTGCTA+GGG + Chr6:25048710-25048729 MsG0680031707.01.T01:intron 40.0%
GTAGTAGCTACATCATGTGT+AGG + Chr6:25045953-25045972 MsG0680031707.01.T01:five_prime_UTR 40.0%
TCCATTAGTCCTCCCAATTT+CGG + Chr6:25048764-25048783 MsG0680031707.01.T01:intron 40.0%
TGAGTAGGACTAAGGTAGTT+CGG + Chr6:25047197-25047216 MsG0680031707.01.T01:intron 40.0%
TGCTTCAGGAACATAAGTGA+TGG - Chr6:25046241-25046260 None:intergenic 40.0%
TGTTCATTGGCAATGGAACA+GGG - Chr6:25049180-25049199 None:intergenic 40.0%
TTGTTCATTGGCAATGGAAC+AGG - Chr6:25049181-25049200 None:intergenic 40.0%
! GCTTCATCAAGTGTTAGTCT+TGG - Chr6:25046279-25046298 None:intergenic 40.0%
! GGCTTTTGGATCTGGATTTA+AGG + Chr6:25049072-25049091 MsG0680031707.01.T01:intron 40.0%
! GTGAGTTTAGCTCAGTTGTT+GGG + Chr6:25047603-25047622 MsG0680031707.01.T01:intron 40.0%
! TGAGTTTTTCCGAAATTGGG+AGG - Chr6:25048776-25048795 None:intergenic 40.0%
!! ACTCGGTGTTAAACTATCGA+AGG + Chr6:25048689-25048708 MsG0680031707.01.T01:intron 40.0%
!! ACTGATATTTTGAGCGGCTA+CGG - Chr6:25048588-25048607 None:intergenic 40.0%
!! GATTTTAGAAAGGTCAGGTG+TGG + Chr6:25046212-25046231 MsG0680031707.01.T01:CDS 40.0%
!! TATCTGAAAGTGATGGTGGT+AGG - Chr6:25046411-25046430 None:intergenic 40.0%
!! TCATCAAGTGTTAGTCTTGG+TGG - Chr6:25046276-25046295 None:intergenic 40.0%
!!! TATTTTTTTCGGTAGTGGCC+GGG - Chr6:25047670-25047689 None:intergenic 40.0%
ACAACTGAGCTAAACTCACG+AGG - Chr6:25047602-25047621 None:intergenic 45.0%
CCTACTCTCAAGTCATCCAT+CGG + Chr6:25048561-25048580 MsG0680031707.01.T01:intron 45.0%
CCTTAGTCCTACTCAGATAC+GGG - Chr6:25047192-25047211 None:intergenic 45.0%
CGATGGATGACTTGAGAGTA+GGG - Chr6:25048563-25048582 None:intergenic 45.0%
CGTACACACATAACATCGCT+CGG + Chr6:25048741-25048760 MsG0680031707.01.T01:intron 45.0%
CTTTGCCAAACGTCTTCTTG+AGG + Chr6:25046518-25046537 MsG0680031707.01.T01:CDS 45.0%
TCCGAAATTGGGAGGACTAA+TGG - Chr6:25048768-25048787 None:intergenic 45.0%
TGTCTCTTTCGAATGGGTGT+CGG + Chr6:25048534-25048553 MsG0680031707.01.T01:intron 45.0%
! CAATTTTGCATGCATACGGG+CGG + Chr6:25048877-25048896 MsG0680031707.01.T01:intron 45.0%
! CGTGAGTTTAGCTCAGTTGT+TGG + Chr6:25047602-25047621 MsG0680031707.01.T01:intron 45.0%
! TGGCAAATGGCTTTTGGATC+TGG + Chr6:25049064-25049083 MsG0680031707.01.T01:intron 45.0%
!!! ATTTTTTTCGGTAGTGGCCG+GGG - Chr6:25047669-25047688 None:intergenic 45.0%
!!! ATATTTTTATTTTATCTAAA+AGG + Chr6:25046949-25046968 MsG0680031707.01.T01:intron 5.0%
!!! TTTTTTATTTGTATAAATTT+GGG - Chr6:25047372-25047391 None:intergenic 5.0%
!!! TTTTTTTATTTGTATAAATT+TGG - Chr6:25047373-25047392 None:intergenic 5.0%
ACCCTCAAGCTCCAACCTAT+AGG + Chr6:25047166-25047185 MsG0680031707.01.T01:intron 50.0%
CCCGTATCTGAGTAGGACTA+AGG + Chr6:25047189-25047208 MsG0680031707.01.T01:intron 50.0%
CCGATGGATGACTTGAGAGT+AGG - Chr6:25048564-25048583 None:intergenic 50.0%
CTACTCAGATACGGGCCTAT+AGG - Chr6:25047184-25047203 None:intergenic 50.0%
CTATAGGCCCGTATCTGAGT+AGG + Chr6:25047182-25047201 MsG0680031707.01.T01:intron 50.0%
TCAGATACGGGCCTATAGGT+TGG - Chr6:25047180-25047199 None:intergenic 50.0%
! GCCTATAGGTTGGAGCTTGA+GGG - Chr6:25047170-25047189 None:intergenic 50.0%
!! CAGTGCTGGTGTTATTGCAG+TGG + Chr6:25046494-25046513 MsG0680031707.01.T01:CDS 50.0%
AAGATCCGGGGTTCAAACCC+CGG + Chr6:25047649-25047668 MsG0680031707.01.T01:intron 55.0%
AGTGGTATGGGATGCAGTGC+TGG + Chr6:25046480-25046499 MsG0680031707.01.T01:CDS 55.0%
GCGGTAGAGCGGTTCTTGAT+CGG + Chr6:25048896-25048915 MsG0680031707.01.T01:intron 55.0%
! GGCCTATAGGTTGGAGCTTG+AGG - Chr6:25047171-25047190 None:intergenic 55.0%
CATGCATACGGGCGGTAGAG+CGG + Chr6:25048885-25048904 MsG0680031707.01.T01:intron 60.0%
GCTTCGTTGCGCACTCACGT+AGG + Chr6:25048612-25048631 MsG0680031707.01.T01:intron 60.0%
TTTGAGCGGCTACGGTCCGA+TGG - Chr6:25048580-25048599 None:intergenic 60.0%
AGTGGCCGGGGTTTGAACCC+CGG - Chr6:25047657-25047676 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 25045829 25049219 25045829 ID=MsG0680031707.01;Name=MsG0680031707.01
Chr6 mRNA 25045829 25049219 25045829 ID=MsG0680031707.01.T01;Parent=MsG0680031707.01;Name=MsG0680031707.01.T01;_AED=0.40;_eAED=0.40;_QI=276|0|0.5|1|1|1|2|0|186
Chr6 exon 25045829 25046539 25045829 ID=MsG0680031707.01.T01:exon:15407;Parent=MsG0680031707.01.T01
Chr6 exon 25049094 25049219 25049094 ID=MsG0680031707.01.T01:exon:15408;Parent=MsG0680031707.01.T01
Chr6 five_prime_UTR 25045829 25046104 25045829 ID=MsG0680031707.01.T01:five_prime_utr;Parent=MsG0680031707.01.T01
Chr6 CDS 25046105 25046539 25046105 ID=MsG0680031707.01.T01:cds;Parent=MsG0680031707.01.T01
Chr6 CDS 25049094 25049219 25049094 ID=MsG0680031707.01.T01:cds;Parent=MsG0680031707.01.T01
Gene Sequence

>MsG0680031707.01.T01

ATGTCACAACCAACAAAAAACAATTGTATTTGCACAAAAGAAATGTTGTTGGATAGAGCAAAACATTTTGGTTTTCTTAATGAAGAAAGTTTCATTTTGATTCATAAGATTTTAGAAAGGTCAGGTGTGGGACCCATCACTTATGTTCCTGAAGCATTATTAGAAATTCCACCAAGACTAACACTTGATGAAGCAAGGAATGATCAAATTAGTTCTTTTGGAGCTGTTGATGAACTTCTTGAGAAAACCAAAGTTGAAGCTAAAGATATTGGAATTCTTGTGGTGAACTGTTGTTTATTTAATCCTACCACCATCACTTTCAGATACTATGTTAATCATTATAAACTTAGAGGGAATATTTTGATCTATAATCTTAGTGGTATGGGATGCAGTGCTGGTGTTATTGCAGTGGACTTTGCCAAACGTCTTCTTGAGGTTAATACTGCTGTTTGGTATGCTTTGAAGAATGTTGATCCTAAATCATTGAAAAATGCTTGGATGGATGAGATTGATGATTTCCCTGTTCCATTGCCAATGAACAAACATATGATTAAAGCTTAG

Protein sequence

>MsG0680031707.01.T01

MSQPTKNNCICTKEMLLDRAKHFGFLNEESFILIHKILERSGVGPITYVPEALLEIPPRLTLDEARNDQISSFGAVDELLEKTKVEAKDIGILVVNCCLFNPTTITFRYYVNHYKLRGNILIYNLSGMGCSAGVIAVDFAKRLLEVNTAVWYALKNVDPKSLKNAWMDEIDDFPVPLPMNKHMIKA*