Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680031707.01.T01 | RHN50815.1 | 83.673 | 147 | 23 | 1 | 6 | 151 | 78 | 224 | 1.80E-79 | 246 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680031707.01.T01 | Q9FG87 | 56.115 | 139 | 60 | 1 | 10 | 147 | 126 | 264 | 3.27E-46 | 161 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680031707.01.T01 | A0A396HHT9 | 83.673 | 147 | 23 | 1 | 6 | 151 | 78 | 224 | 8.59e-80 | 246 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048357.01 | MsG0680031707.01 | 0.924395 | 7.463844e-90 | 3.144795e-85 |
MsG0180000036.01 | MsG0680031707.01 | 0.806799 | 6.900744e-50 | 3.780407e-47 |
MsG0180000632.01 | MsG0680031707.01 | 0.906830 | 9.755876e-81 | 1.682005e-76 |
MsG0180000994.01 | MsG0680031707.01 | 0.822056 | 2.905352e-53 | 2.405265e-50 |
MsG0180001200.01 | MsG0680031707.01 | 0.890326 | 1.090336e-73 | 9.125991e-70 |
MsG0180001771.01 | MsG0680031707.01 | 0.892124 | 2.119751e-74 | 1.911230e-70 |
MsG0180003431.01 | MsG0680031707.01 | 0.846105 | 2.677166e-59 | 4.558302e-56 |
MsG0180003741.01 | MsG0680031707.01 | 0.866086 | 3.685806e-65 | 1.226949e-61 |
MsG0180005540.01 | MsG0680031707.01 | 0.829116 | 6.161818e-55 | 6.247052e-52 |
MsG0380011496.01 | MsG0680031707.01 | 0.861011 | 1.383970e-63 | 3.858137e-60 |
MsG0380011501.01 | MsG0680031707.01 | 0.855302 | 6.912906e-62 | 1.588867e-58 |
MsG0380011675.01 | MsG0680031707.01 | 0.811592 | 6.480670e-51 | 4.027787e-48 |
MsG0680031342.01 | MsG0680031707.01 | 0.876189 | 1.701044e-68 | 8.170360e-65 |
MsG0680031428.01 | MsG0680031707.01 | 0.831826 | 1.339339e-55 | 1.470429e-52 |
MsG0680031707.01 | MsG0680031959.01 | 0.818814 | 1.610594e-52 | 1.218133e-49 |
MsG0680031707.01 | MsG0680033143.01 | 0.844926 | 5.586843e-59 | 9.159495e-56 |
MsG0680031707.01 | MsG0680034835.01 | 0.842049 | 3.277687e-58 | 4.908931e-55 |
MsG0680031707.01 | MsG0680035658.01 | 0.818802 | 1.620333e-52 | 1.225090e-49 |
MsG0680031707.01 | MsG0680035683.01 | 0.866812 | 2.167913e-65 | 7.405097e-62 |
MsG0680031707.01 | MsG0780036148.01 | 0.853318 | 2.586029e-61 | 5.565310e-58 |
MsG0680031707.01 | MsG0780038048.01 | 0.818804 | 1.619147e-52 | 1.224242e-49 |
MsG0680031707.01 | MsG0780040286.01 | 0.801197 | 1.008866e-48 | 4.788738e-46 |
MsG0680031707.01 | MsG0780040432.01 | 0.821044 | 4.976688e-53 | 4.005177e-50 |
MsG0680031707.01 | MsG0780040846.01 | 0.875091 | 4.048247e-68 | 1.866786e-64 |
MsG0680031707.01 | MsG0780040966.01 | 0.877649 | 5.306171e-69 | 2.688830e-65 |
MsG0680031707.01 | MsG0780041259.01 | 0.853541 | 2.232383e-61 | 4.840108e-58 |
MsG0680031707.01 | MsG0780041676.01 | 0.855075 | 8.048211e-62 | 1.835712e-58 |
MsG0680031707.01 | MsG0780041698.01 | 0.845817 | 3.205458e-59 | 5.408294e-56 |
MsG0680031707.01 | MsG0880041858.01 | 0.898540 | 4.799131e-77 | 5.697439e-73 |
MsG0680031707.01 | MsG0880042442.01 | 0.853799 | 1.881835e-61 | 4.115181e-58 |
MsG0680031707.01 | MsG0880042958.01 | 0.830614 | 2.659429e-55 | 2.816438e-52 |
MsG0680031707.01 | MsG0880042959.01 | 0.814735 | 1.324488e-51 | 8.958664e-49 |
MsG0680031707.01 | MsG0880045585.01 | 0.884911 | 1.279162e-71 | 8.598500e-68 |
MsG0680031707.01 | MsG0880045586.01 | 0.888927 | 3.823720e-73 | 3.021598e-69 |
MsG0680031707.01 | MsG0880046580.01 | 0.805217 | 1.484895e-49 | 7.811397e-47 |
MsG0680031707.01 | MsG0880046636.01 | 0.817239 | 3.655122e-52 | 2.647361e-49 |
MsG0680031707.01 | MsG0880046942.01 | 0.813056 | 3.105274e-51 | 2.006842e-48 |
MsG0480018909.01 | MsG0680031707.01 | 0.886015 | 4.939982e-72 | 3.467851e-68 |
MsG0480019279.01 | MsG0680031707.01 | 0.837682 | 4.501324e-57 | 5.891912e-54 |
MsG0480020096.01 | MsG0680031707.01 | 0.831048 | 2.081325e-55 | 2.232611e-52 |
MsG0480024022.01 | MsG0680031707.01 | 0.866278 | 3.205060e-65 | 1.074174e-61 |
MsG0580024094.01 | MsG0680031707.01 | 0.824409 | 8.199497e-54 | 7.256042e-51 |
MsG0580025821.01 | MsG0680031707.01 | 0.800100 | 1.688528e-48 | 7.794988e-46 |
MsG0580025974.01 | MsG0680031707.01 | 0.808608 | 2.849215e-50 | 1.636265e-47 |
MsG0380015577.01 | MsG0680031707.01 | 0.817352 | 3.447564e-52 | 2.504728e-49 |
MsG0380016465.01 | MsG0680031707.01 | 0.876360 | 1.485760e-68 | 7.182142e-65 |
MsG0380016466.01 | MsG0680031707.01 | 0.836027 | 1.190154e-56 | 1.481298e-53 |
MsG0380017823.01 | MsG0680031707.01 | 0.823914 | 1.071782e-53 | 9.353649e-51 |
MsG0380017869.01 | MsG0680031707.01 | 0.831290 | 1.815594e-55 | 1.961465e-52 |
MsG0580026198.01 | MsG0680031707.01 | 0.802702 | 4.949997e-49 | 2.441143e-46 |
MsG0580027925.01 | MsG0680031707.01 | 0.856372 | 3.364246e-62 | 8.012791e-59 |
MsG0580029310.01 | MsG0680031707.01 | 0.871188 | 8.266826e-67 | 3.304453e-63 |
MsG0580029405.01 | MsG0680031707.01 | 0.845268 | 4.514731e-59 | 7.483173e-56 |
MsG0580029406.01 | MsG0680031707.01 | 0.825016 | 5.897799e-54 | 5.311971e-51 |
MsG0580029417.01 | MsG0680031707.01 | 0.910905 | 1.110019e-82 | 2.319013e-78 |
MsG0580029418.01 | MsG0680031707.01 | 0.935584 | 6.733729e-97 | 5.464042e-92 |
MsG0680030328.01 | MsG0680031707.01 | 0.801182 | 1.015912e-48 | 4.820427e-46 |
MsG0280007252.01 | MsG0680031707.01 | 0.840428 | 8.747034e-58 | 1.245546e-54 |
MsG0280007305.01 | MsG0680031707.01 | 0.933680 | 1.297137e-95 | 9.352309e-91 |
MsG0280007414.01 | MsG0680031707.01 | 0.875910 | 2.122372e-68 | 1.008963e-64 |
MsG0280007884.01 | MsG0680031707.01 | 0.805707 | 1.172025e-49 | 6.244154e-47 |
MsG0280008362.01 | MsG0680031707.01 | 0.818366 | 2.035562e-52 | 1.520751e-49 |
MsG0280008390.01 | MsG0680031707.01 | 0.850392 | 1.749009e-60 | 3.420963e-57 |
MsG0280008391.01 | MsG0680031707.01 | 0.857676 | 1.388094e-62 | 3.453546e-59 |
MsG0280008392.01 | MsG0680031707.01 | 0.857207 | 1.909695e-62 | 4.676858e-59 |
MsG0280008395.01 | MsG0680031707.01 | 0.852078 | 5.843596e-61 | 1.207158e-57 |
MsG0280008396.01 | MsG0680031707.01 | 0.806073 | 9.819377e-50 | 5.280301e-47 |
MsG0280008397.01 | MsG0680031707.01 | 0.829805 | 4.191854e-55 | 4.337170e-52 |
MsG0280010163.01 | MsG0680031707.01 | 0.855526 | 5.948699e-62 | 1.377363e-58 |
MsG0280010320.01 | MsG0680031707.01 | 0.814087 | 1.841330e-51 | 1.223807e-48 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680031707.01.T01 | MTR_6g032965 | 85.075 | 134 | 19 | 1 | 15 | 147 | 1 | 134 | 1.31e-73 | 227 |
MsG0680031707.01.T01 | MTR_6g032965 | 95.349 | 43 | 2 | 0 | 144 | 186 | 351 | 393 | 2.29e-22 | 92.8 |
MsG0680031707.01.T01 | MTR_1g076430 | 54.545 | 143 | 64 | 1 | 6 | 147 | 114 | 256 | 4.07e-46 | 158 |
MsG0680031707.01.T01 | MTR_2g054940 | 55.072 | 138 | 61 | 1 | 11 | 147 | 118 | 255 | 4.70e-46 | 158 |
MsG0680031707.01.T01 | MTR_1g041085 | 54.745 | 137 | 61 | 1 | 12 | 147 | 126 | 262 | 6.50e-43 | 150 |
MsG0680031707.01.T01 | MTR_4g054415 | 51.773 | 141 | 67 | 1 | 8 | 147 | 34 | 174 | 4.02e-41 | 144 |
MsG0680031707.01.T01 | MTR_4g054630 | 51.773 | 141 | 67 | 1 | 8 | 147 | 75 | 215 | 6.83e-41 | 144 |
MsG0680031707.01.T01 | MTR_6g074880 | 46.835 | 158 | 81 | 3 | 10 | 166 | 79 | 234 | 7.49e-41 | 144 |
MsG0680031707.01.T01 | MTR_7g081695 | 50.365 | 137 | 57 | 1 | 11 | 147 | 118 | 243 | 2.91e-38 | 139 |
MsG0680031707.01.T01 | MTR_4g113280 | 48.551 | 138 | 59 | 2 | 11 | 147 | 107 | 233 | 1.53e-36 | 132 |
MsG0680031707.01.T01 | MTR_4g070270 | 51.880 | 133 | 63 | 1 | 16 | 147 | 121 | 253 | 3.64e-36 | 131 |
MsG0680031707.01.T01 | MTR_3g105550 | 45.652 | 138 | 73 | 2 | 12 | 147 | 140 | 277 | 1.81e-34 | 127 |
MsG0680031707.01.T01 | MTR_7g118170 | 48.872 | 133 | 64 | 2 | 16 | 147 | 146 | 275 | 4.07e-32 | 121 |
MsG0680031707.01.T01 | MTR_1g110930 | 48.361 | 122 | 62 | 1 | 27 | 147 | 120 | 241 | 2.91e-30 | 115 |
MsG0680031707.01.T01 | MTR_5g056510 | 48.760 | 121 | 61 | 1 | 27 | 146 | 120 | 240 | 9.55e-30 | 114 |
MsG0680031707.01.T01 | MTR_2g013740 | 36.879 | 141 | 88 | 1 | 7 | 146 | 124 | 264 | 9.65e-25 | 100 |
MsG0680031707.01.T01 | MTR_2g007020 | 39.823 | 113 | 67 | 1 | 36 | 147 | 89 | 201 | 1.44e-21 | 91.3 |
MsG0680031707.01.T01 | MTR_2g436480 | 34.694 | 147 | 89 | 2 | 8 | 147 | 54 | 200 | 5.79e-20 | 86.7 |
MsG0680031707.01.T01 | MTR_1g102290 | 35.915 | 142 | 90 | 1 | 7 | 147 | 94 | 235 | 6.24e-20 | 86.7 |
MsG0680031707.01.T01 | MTR_4g054265 | 48.810 | 84 | 42 | 1 | 8 | 90 | 34 | 117 | 3.49e-18 | 76.6 |
MsG0680031707.01.T01 | MTR_3g072980 | 36.585 | 123 | 77 | 1 | 26 | 147 | 114 | 236 | 2.05e-17 | 79.3 |
MsG0680031707.01.T01 | MTR_3g072940 | 36.585 | 123 | 77 | 1 | 26 | 147 | 114 | 236 | 2.05e-17 | 79.3 |
MsG0680031707.01.T01 | MTR_1g115560 | 36.641 | 131 | 76 | 3 | 19 | 146 | 59 | 185 | 3.22e-17 | 79.0 |
MsG0680031707.01.T01 | MTR_6g051440 | 39.024 | 123 | 74 | 1 | 26 | 147 | 113 | 235 | 2.49e-15 | 73.6 |
MsG0680031707.01.T01 | MTR_2g096210 | 33.766 | 154 | 84 | 5 | 26 | 171 | 64 | 207 | 7.11e-15 | 72.0 |
MsG0680031707.01.T01 | MTR_4g062190 | 32.026 | 153 | 85 | 6 | 3 | 145 | 40 | 183 | 3.27e-14 | 70.1 |
MsG0680031707.01.T01 | MTR_7g118160 | 32.836 | 134 | 54 | 2 | 14 | 147 | 75 | 172 | 6.02e-14 | 69.3 |
MsG0680031707.01.T01 | MTR_4g062170 | 31.373 | 153 | 86 | 6 | 3 | 145 | 40 | 183 | 2.79e-13 | 67.4 |
MsG0680031707.01.T01 | MTR_4g062270 | 28.571 | 147 | 98 | 5 | 3 | 145 | 40 | 183 | 3.15e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680031707.01.T01 | AT5G43760 | 56.115 | 139 | 60 | 1 | 10 | 147 | 126 | 264 | 3.34e-47 | 161 |
MsG0680031707.01.T01 | AT1G04220 | 54.930 | 142 | 63 | 1 | 7 | 147 | 117 | 258 | 7.73e-47 | 160 |
MsG0680031707.01.T01 | AT2G26640 | 57.353 | 136 | 57 | 1 | 11 | 145 | 116 | 251 | 1.04e-45 | 157 |
MsG0680031707.01.T01 | AT2G16280 | 47.403 | 154 | 78 | 2 | 14 | 166 | 127 | 278 | 4.58e-38 | 137 |
MsG0680031707.01.T01 | AT2G26250 | 48.175 | 137 | 70 | 1 | 12 | 147 | 138 | 274 | 1.93e-37 | 135 |
MsG0680031707.01.T01 | AT1G19440 | 52.632 | 133 | 62 | 1 | 16 | 147 | 133 | 265 | 7.45e-37 | 134 |
MsG0680031707.01.T01 | AT4G34510 | 52.033 | 123 | 58 | 1 | 26 | 147 | 113 | 235 | 9.46e-34 | 125 |
MsG0680031707.01.T01 | AT2G46720 | 42.466 | 146 | 82 | 2 | 3 | 147 | 69 | 213 | 6.23e-33 | 122 |
MsG0680031707.01.T01 | AT1G01120 | 44.800 | 125 | 68 | 1 | 24 | 147 | 151 | 275 | 1.74e-31 | 119 |
MsG0680031707.01.T01 | AT1G68530 | 52.212 | 113 | 53 | 1 | 36 | 147 | 130 | 242 | 4.73e-31 | 116 |
MsG0680031707.01.T01 | AT4G34520 | 50.394 | 127 | 61 | 2 | 29 | 154 | 121 | 246 | 1.69e-30 | 116 |
MsG0680031707.01.T01 | AT1G68530 | 52.212 | 113 | 53 | 1 | 36 | 147 | 130 | 242 | 2.01e-30 | 116 |
MsG0680031707.01.T01 | AT3G52160 | 45.455 | 132 | 70 | 2 | 24 | 154 | 4 | 134 | 4.31e-29 | 110 |
MsG0680031707.01.T01 | AT1G25450 | 49.180 | 122 | 61 | 1 | 27 | 147 | 116 | 237 | 4.52e-29 | 112 |
MsG0680031707.01.T01 | AT3G52160 | 43.750 | 144 | 79 | 2 | 12 | 154 | 105 | 247 | 6.31e-29 | 111 |
MsG0680031707.01.T01 | AT2G15090 | 50.370 | 135 | 61 | 3 | 19 | 147 | 96 | 230 | 2.65e-28 | 110 |
MsG0680031707.01.T01 | AT4G34250 | 48.872 | 133 | 66 | 2 | 36 | 167 | 126 | 257 | 8.66e-27 | 106 |
MsG0680031707.01.T01 | AT3G10280 | 39.041 | 146 | 80 | 3 | 3 | 147 | 69 | 206 | 7.26e-26 | 103 |
MsG0680031707.01.T01 | AT1G71160 | 35.172 | 145 | 90 | 2 | 24 | 164 | 76 | 220 | 1.23e-22 | 94.4 |
MsG0680031707.01.T01 | AT5G49070 | 33.803 | 142 | 91 | 2 | 26 | 166 | 82 | 221 | 1.93e-20 | 87.0 |
MsG0680031707.01.T01 | AT5G49070 | 36.585 | 123 | 77 | 1 | 26 | 147 | 82 | 204 | 6.74e-20 | 86.7 |
MsG0680031707.01.T01 | AT5G04530 | 39.716 | 141 | 74 | 6 | 11 | 146 | 54 | 188 | 7.40e-19 | 83.6 |
MsG0680031707.01.T01 | AT2G28630 | 32.653 | 147 | 92 | 5 | 3 | 145 | 40 | 183 | 6.12e-17 | 78.2 |
MsG0680031707.01.T01 | AT2G28630 | 32.653 | 147 | 92 | 5 | 3 | 145 | 40 | 183 | 6.12e-17 | 78.2 |
MsG0680031707.01.T01 | AT1G07720 | 35.385 | 130 | 79 | 4 | 19 | 146 | 58 | 184 | 1.38e-16 | 77.0 |
MsG0680031707.01.T01 | AT1G07720 | 35.385 | 130 | 79 | 4 | 19 | 146 | 101 | 227 | 1.41e-16 | 77.0 |
Find 37 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATGATCAAATTAGTTCTTT+TGG | 0.212566 | 6:+25046303 | MsG0680031707.01.T01:CDS |
GTTAATCATTATAAACTTAG+AGG | 0.246655 | 6:+25046435 | MsG0680031707.01.T01:CDS |
TTGGATAGAGCAAAACATTT+TGG | 0.264127 | 6:+25046153 | MsG0680031707.01.T01:CDS |
GGAATTTCTAATAATGCTTC+AGG | 0.313917 | 6:-25046252 | None:intergenic |
ATCTACTAGGTATATTTGTT+TGG | 0.331716 | 6:-25046077 | None:intergenic |
AAAGTTGAAGCTAAAGATAT+TGG | 0.336152 | 6:+25046354 | MsG0680031707.01.T01:CDS |
TTGTTCATTGGCAATGGAAC+AGG | 0.342492 | 6:-25049178 | None:intergenic |
TAGAAATGCTTCAACATTGT+TGG | 0.353388 | 6:-25045885 | None:intergenic |
TTAATCATATGTTTGTTCAT+TGG | 0.363214 | 6:-25049190 | None:intergenic |
TTGCACAAAAGAAATGTTGT+TGG | 0.390520 | 6:+25046134 | MsG0680031707.01.T01:CDS |
GATCTATAATCTTAGTGGTA+TGG | 0.390916 | 6:+25046467 | MsG0680031707.01.T01:CDS |
AATATCTTTAGCTTCAACTT+TGG | 0.416100 | 6:-25046352 | None:intergenic |
TTAAGGTTAATACTGCTGTT+TGG | 0.420779 | 6:+25049089 | MsG0680031707.01.T01:intron |
ATCTATAATCTTAGTGGTAT+GGG | 0.428495 | 6:+25046468 | MsG0680031707.01.T01:CDS |
TTTATCAATATTGATGGTTG+AGG | 0.454477 | 6:-25046005 | None:intergenic |
TCATCAAGTGTTAGTCTTGG+TGG | 0.459635 | 6:-25046273 | None:intergenic |
AAATACCTCAAGAAGACGTT+TGG | 0.460466 | 6:-25046523 | None:intergenic |
AGTGGTATGGGATGCAGTGC+TGG | 0.470681 | 6:+25046480 | MsG0680031707.01.T01:CDS |
ATATGTTTGTTCATTGGCAA+TGG | 0.471516 | 6:-25049184 | None:intergenic |
GCTTCATCAAGTGTTAGTCT+TGG | 0.477201 | 6:-25046276 | None:intergenic |
CATGAAAATGTAGTAAACTA+AGG | 0.486928 | 6:-25046048 | None:intergenic |
TGTGACATGCAAAATCTACT+AGG | 0.521489 | 6:-25046090 | None:intergenic |
TTAATCATTATAAACTTAGA+GGG | 0.532074 | 6:+25046436 | MsG0680031707.01.T01:CDS |
TGCTTCAGGAACATAAGTGA+TGG | 0.543655 | 6:-25046238 | None:intergenic |
ATGTTGTTGAAAGGATAGCT+AGG | 0.550736 | 6:-25045846 | None:intergenic |
TAAAGATATTGGAATTCTTG+TGG | 0.557701 | 6:+25046365 | MsG0680031707.01.T01:CDS |
GACTAACACTTGATGAAGCA+AGG | 0.570909 | 6:+25046280 | MsG0680031707.01.T01:CDS |
GTAGTAGCTACATCATGTGT+AGG | 0.584328 | 6:+25045953 | MsG0680031707.01.T01:five_prime_UTR |
TATCTGAAAGTGATGGTGGT+AGG | 0.586194 | 6:-25046408 | None:intergenic |
CAGTGCTGGTGTTATTGCAG+TGG | 0.587920 | 6:+25046494 | MsG0680031707.01.T01:CDS |
TGTTCATTGGCAATGGAACA+GGG | 0.590457 | 6:-25049177 | None:intergenic |
TGTGTGTGAATGTTGTTGAA+AGG | 0.595264 | 6:-25045855 | None:intergenic |
CTTTGCCAAACGTCTTCTTG+AGG | 0.595847 | 6:+25046518 | MsG0680031707.01.T01:CDS |
GCTTCAGGAACATAAGTGAT+GGG | 0.600651 | 6:-25046237 | None:intergenic |
TGTTGTTGAAAGGATAGCTA+GGG | 0.605509 | 6:-25045845 | None:intergenic |
AACATAGTATCTGAAAGTGA+TGG | 0.626569 | 6:-25046415 | None:intergenic |
ATAGTATCTGAAAGTGATGG+TGG | 0.666132 | 6:-25046412 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAAAAAATATAAAAGAGT+GGG | + | Chr6:25047134-25047153 | MsG0680031707.01.T01:intron | 10.0% |
!! | TTAAAAAAAATATAAAAGAG+TGG | + | Chr6:25047133-25047152 | MsG0680031707.01.T01:intron | 10.0% |
!!! | AAAAAGTACAAAATTATTTA+AGG | + | Chr6:25046608-25046627 | MsG0680031707.01.T01:intron | 10.0% |
!!! | ATTATTTTTGTTTTTTTTGT+TGG | - | Chr6:25048075-25048094 | None:intergenic | 10.0% |
!!! | TATGTATATGTTATTTTTTT+CGG | - | Chr6:25047681-25047700 | None:intergenic | 10.0% |
!! | AAAAAAAAAATGAAAATGTC+TGG | - | Chr6:25046758-25046777 | None:intergenic | 15.0% |
!! | TTAATCATTATAAACTTAGA+GGG | + | Chr6:25046436-25046455 | MsG0680031707.01.T01:CDS | 15.0% |
!! | TTATATGAGAAAACAATATA+TGG | - | Chr6:25047911-25047930 | None:intergenic | 15.0% |
!!! | AATGATTTTATCAATATTGA+TGG | - | Chr6:25046014-25046033 | None:intergenic | 15.0% |
!!! | ATATTGTTTTCTCATATAAT+TGG | + | Chr6:25047912-25047931 | MsG0680031707.01.T01:intron | 15.0% |
!!! | CACTATTTTTCTTTTTTTTT+TGG | - | Chr6:25047510-25047529 | None:intergenic | 15.0% |
!!! | GTTTGTTAAATTTATTTGTA+GGG | - | Chr6:25048343-25048362 | None:intergenic | 15.0% |
!!! | TATTTTATCTAAAAGGTTAT+TGG | + | Chr6:25046956-25046975 | MsG0680031707.01.T01:intron | 15.0% |
!!! | TGAAGATATTTTATAATTGA+TGG | + | Chr6:25048190-25048209 | MsG0680031707.01.T01:intron | 15.0% |
!!! | TGTTTGTTAAATTTATTTGT+AGG | - | Chr6:25048344-25048363 | None:intergenic | 15.0% |
!! | AAAATAAAATATGCAAGATC+CGG | + | Chr6:25047635-25047654 | MsG0680031707.01.T01:intron | 20.0% |
!! | AAACTATATGAAATTGATGA+TGG | - | Chr6:25047018-25047037 | None:intergenic | 20.0% |
!! | ACCTCTAGTATTAAATATTT+GGG | - | Chr6:25046807-25046826 | None:intergenic | 20.0% |
!! | ATAATCAAGCTTAATTAGTT+AGG | - | Chr6:25048405-25048424 | None:intergenic | 20.0% |
!! | GAGATATCAATATGTATTTA+TGG | + | Chr6:25047098-25047117 | MsG0680031707.01.T01:intron | 20.0% |
!! | GTTAAAAAGGGAATAAAATA+TGG | + | Chr6:25049044-25049063 | MsG0680031707.01.T01:intron | 20.0% |
!! | GTTAATCATTATAAACTTAG+AGG | + | Chr6:25046435-25046454 | MsG0680031707.01.T01:CDS | 20.0% |
!! | TACCTCTAGTATTAAATATT+TGG | - | Chr6:25046808-25046827 | None:intergenic | 20.0% |
!! | TCAGAATCTTAATTCAATAA+TGG | - | Chr6:25048020-25048039 | None:intergenic | 20.0% |
!! | TTAAAAATGTTCTCATATAG+TGG | - | Chr6:25047873-25047892 | None:intergenic | 20.0% |
!! | TTAATCATATGTTTGTTCAT+TGG | - | Chr6:25049193-25049212 | None:intergenic | 20.0% |
!!! | AACTATATGAAATTGATGAT+GGG | - | Chr6:25047017-25047036 | None:intergenic | 20.0% |
!!! | AATGATCAAATTAGTTCTTT+TGG | + | Chr6:25046303-25046322 | MsG0680031707.01.T01:CDS | 20.0% |
!!! | ACAAATAAAAAAAGTGTAGT+TGG | + | Chr6:25047380-25047399 | MsG0680031707.01.T01:intron | 20.0% |
!!! | ACTATTTTATACTTGTTTGT+TGG | + | Chr6:25046669-25046688 | MsG0680031707.01.T01:intron | 20.0% |
!!! | ATTTTGATCTATAATCTTAG+TGG | + | Chr6:25046462-25046481 | MsG0680031707.01.T01:CDS | 20.0% |
!!! | CAAATACAATTGTTTTTTGT+TGG | - | Chr6:25046117-25046136 | None:intergenic | 20.0% |
!!! | CTGCTATTAATTTTTTTTGA+AGG | - | Chr6:25047079-25047098 | None:intergenic | 20.0% |
!!! | GAAGATTTTGCTATTTATTA+TGG | + | Chr6:25047735-25047754 | MsG0680031707.01.T01:intron | 20.0% |
!!! | GGTTTTAGTTGTTTTTTTTT+TGG | + | Chr6:25047218-25047237 | MsG0680031707.01.T01:intron | 20.0% |
!!! | TGATTCATAAGATTTTAGAA+AGG | + | Chr6:25046202-25046221 | MsG0680031707.01.T01:CDS | 20.0% |
! | AAAGTTGAAGCTAAAGATAT+TGG | + | Chr6:25046354-25046373 | MsG0680031707.01.T01:CDS | 25.0% |
! | AAATAAAATATGCAAGATCC+GGG | + | Chr6:25047636-25047655 | MsG0680031707.01.T01:intron | 25.0% |
! | ACATTAGCTGTATTAATTGA+AGG | + | Chr6:25047420-25047439 | MsG0680031707.01.T01:intron | 25.0% |
! | ACCCAAATATTTAATACTAG+AGG | + | Chr6:25046803-25046822 | MsG0680031707.01.T01:intron | 25.0% |
! | AGAATGACACTATATAGATA+TGG | + | Chr6:25048964-25048983 | MsG0680031707.01.T01:intron | 25.0% |
! | ATCTACTAGGTATATTTGTT+TGG | - | Chr6:25046080-25046099 | None:intergenic | 25.0% |
! | ATCTATAATCTTAGTGGTAT+GGG | + | Chr6:25046468-25046487 | MsG0680031707.01.T01:CDS | 25.0% |
! | CATGAAAATGTAGTAAACTA+AGG | - | Chr6:25046051-25046070 | None:intergenic | 25.0% |
! | CTAAATCATTGAAAAATGCT+TGG | + | Chr6:25049134-25049153 | MsG0680031707.01.T01:CDS | 25.0% |
! | GGTTATTTACATATAGCAAA+AGG | + | Chr6:25047239-25047258 | MsG0680031707.01.T01:intron | 25.0% |
! | TAAAGATATTGGAATTCTTG+TGG | + | Chr6:25046365-25046384 | MsG0680031707.01.T01:CDS | 25.0% |
! | TAACTTAAAATTCGCATGTA+TGG | - | Chr6:25048848-25048867 | None:intergenic | 25.0% |
! | TATGTGAAAATTTAGTTGAG+AGG | + | Chr6:25048798-25048817 | MsG0680031707.01.T01:intron | 25.0% |
! | TTATTTATGACATGCAATAC+AGG | + | Chr6:25048421-25048440 | MsG0680031707.01.T01:intron | 25.0% |
!! | AATATCTTTAGCTTCAACTT+TGG | - | Chr6:25046355-25046374 | None:intergenic | 25.0% |
!! | TTTATCAATATTGATGGTTG+AGG | - | Chr6:25046008-25046027 | None:intergenic | 25.0% |
!!! | ATACTGGAAGATACTTTTTT+TGG | - | Chr6:25047939-25047958 | None:intergenic | 25.0% |
!!! | CAAGCATTTTTCAATGATTT+AGG | - | Chr6:25049136-25049155 | None:intergenic | 25.0% |
!!! | TATGTTATTTTTTTCGGTAG+TGG | - | Chr6:25047675-25047694 | None:intergenic | 25.0% |
AAATTACATGTAGCTAGCAA+GGG | - | Chr6:25048379-25048398 | None:intergenic | 30.0% | |
AACATAGTATCTGAAAGTGA+TGG | - | Chr6:25046418-25046437 | None:intergenic | 30.0% | |
AATAAAATATGCAAGATCCG+GGG | + | Chr6:25047637-25047656 | MsG0680031707.01.T01:intron | 30.0% | |
ACTAATTGTCTCTTTCGAAT+GGG | + | Chr6:25048528-25048547 | MsG0680031707.01.T01:intron | 30.0% | |
AGGGAATAAAATATGGCAAA+TGG | + | Chr6:25049051-25049070 | MsG0680031707.01.T01:intron | 30.0% | |
ATATGTTTGTTCATTGGCAA+TGG | - | Chr6:25049187-25049206 | None:intergenic | 30.0% | |
ATCATTGAAAAATGCTTGGA+TGG | + | Chr6:25049138-25049157 | MsG0680031707.01.T01:CDS | 30.0% | |
CAAATCTCAAGCATATACAA+AGG | + | Chr6:25048484-25048503 | MsG0680031707.01.T01:intron | 30.0% | |
CAATTAGTAAGGATCATTGA+AGG | - | Chr6:25048516-25048535 | None:intergenic | 30.0% | |
GAAGACGAAAAAGAAATACT+CGG | + | Chr6:25048672-25048691 | MsG0680031707.01.T01:intron | 30.0% | |
GATCTATAATCTTAGTGGTA+TGG | + | Chr6:25046467-25046486 | MsG0680031707.01.T01:CDS | 30.0% | |
GGAATTTCTAATAATGCTTC+AGG | - | Chr6:25046255-25046274 | None:intergenic | 30.0% | |
TAAATATTTGGGTCTCTCAA+TGG | - | Chr6:25046796-25046815 | None:intergenic | 30.0% | |
TACTAATTGTCTCTTTCGAA+TGG | + | Chr6:25048527-25048546 | MsG0680031707.01.T01:intron | 30.0% | |
TAGAAATGCTTCAACATTGT+TGG | - | Chr6:25045888-25045907 | None:intergenic | 30.0% | |
TTAAGGTTAATACTGCTGTT+TGG | + | Chr6:25049089-25049108 | MsG0680031707.01.T01:intron | 30.0% | |
TTCGAAAGAGACAATTAGTA+AGG | - | Chr6:25048527-25048546 | None:intergenic | 30.0% | |
TTGCACAAAAGAAATGTTGT+TGG | + | Chr6:25046134-25046153 | MsG0680031707.01.T01:CDS | 30.0% | |
! | AAAATATGGCAAATGGCTTT+TGG | + | Chr6:25049058-25049077 | MsG0680031707.01.T01:intron | 30.0% |
! | ACTTGAGTTTTTCCGAAATT+GGG | - | Chr6:25048779-25048798 | None:intergenic | 30.0% |
! | ATTGTCTTATTGTGAAGCTA+AGG | + | Chr6:25049017-25049036 | MsG0680031707.01.T01:intron | 30.0% |
! | CTATATAGTGTCATTCTTGA+AGG | - | Chr6:25048961-25048980 | None:intergenic | 30.0% |
! | TACTTGAGTTTTTCCGAAAT+TGG | - | Chr6:25048780-25048799 | None:intergenic | 30.0% |
! | TGATATTGCTTCTTGTTTGT+CGG | + | Chr6:25046645-25046664 | MsG0680031707.01.T01:intron | 30.0% |
! | TTGGATAGAGCAAAACATTT+TGG | + | Chr6:25046153-25046172 | MsG0680031707.01.T01:CDS | 30.0% |
! | TTGTCTTATTGTGAAGCTAA+GGG | + | Chr6:25049018-25049037 | MsG0680031707.01.T01:intron | 30.0% |
!! | CATAAGATTTTAGAAAGGTC+AGG | + | Chr6:25046207-25046226 | MsG0680031707.01.T01:CDS | 30.0% |
!! | TGAGCTTGATGATTTTCATA+TGG | + | Chr6:25048933-25048952 | MsG0680031707.01.T01:intron | 30.0% |
AAATACCTCAAGAAGACGTT+TGG | - | Chr6:25046526-25046545 | None:intergenic | 35.0% | |
AAGCTAAGGGAGAGTTAAAA+AGG | + | Chr6:25049031-25049050 | MsG0680031707.01.T01:intron | 35.0% | |
ACACATCATCAAGTTCTGTT+TGG | + | Chr6:25048989-25049008 | MsG0680031707.01.T01:intron | 35.0% | |
AGCACTAAAGCATATGAGTT+GGG | - | Chr6:25048451-25048470 | None:intergenic | 35.0% | |
AGCTAAGGGAGAGTTAAAAA+GGG | + | Chr6:25049032-25049051 | MsG0680031707.01.T01:intron | 35.0% | |
ATAGTATCTGAAAGTGATGG+TGG | - | Chr6:25046415-25046434 | None:intergenic | 35.0% | |
ATGTGCTAAGCTCACTATTA+AGG | - | Chr6:25048318-25048337 | None:intergenic | 35.0% | |
ATGTTGTTGAAAGGATAGCT+AGG | - | Chr6:25045849-25045868 | None:intergenic | 35.0% | |
CAAATTACATGTAGCTAGCA+AGG | - | Chr6:25048380-25048399 | None:intergenic | 35.0% | |
CGTGTGAATTTGTATCATTG+CGG | - | Chr6:25047801-25047820 | None:intergenic | 35.0% | |
GTTTCACTGTCAATCATCAT+AGG | + | Chr6:25047993-25048012 | MsG0680031707.01.T01:intron | 35.0% | |
TAGCACTAAAGCATATGAGT+TGG | - | Chr6:25048452-25048471 | None:intergenic | 35.0% | |
TAGTGGTGAAATAGATACAG+TGG | - | Chr6:25047856-25047875 | None:intergenic | 35.0% | |
TGTGACATGCAAAATCTACT+AGG | - | Chr6:25046093-25046112 | None:intergenic | 35.0% | |
TGTGTGTGAATGTTGTTGAA+AGG | - | Chr6:25045858-25045877 | None:intergenic | 35.0% | |
TGTTGTTGAAAGGATAGCTA+GGG | - | Chr6:25045848-25045867 | None:intergenic | 35.0% | |
! | CGATCAATTTTGCATGCATA+CGG | + | Chr6:25048873-25048892 | MsG0680031707.01.T01:intron | 35.0% |
! | GATCAATTTTGCATGCATAC+GGG | + | Chr6:25048874-25048893 | MsG0680031707.01.T01:intron | 35.0% |
!! | ATTTTAGAAAGGTCAGGTGT+GGG | + | Chr6:25046213-25046232 | MsG0680031707.01.T01:CDS | 35.0% |
!! | GCATCAACTGATATTTTGAG+CGG | - | Chr6:25048594-25048613 | None:intergenic | 35.0% |
!!! | TTATTTTTTTCGGTAGTGGC+CGG | - | Chr6:25047671-25047690 | None:intergenic | 35.0% |
ACCTTAGTCCTACTCAGATA+CGG | - | Chr6:25047193-25047212 | None:intergenic | 40.0% | |
AGGATCTCATGAATGTTGCT+AGG | + | Chr6:25048709-25048728 | MsG0680031707.01.T01:intron | 40.0% | |
CTGTGACTGAACACATATAC+TGG | - | Chr6:25047955-25047974 | None:intergenic | 40.0% | |
GACTAACACTTGATGAAGCA+AGG | + | Chr6:25046280-25046299 | MsG0680031707.01.T01:CDS | 40.0% | |
GCTTCAGGAACATAAGTGAT+GGG | - | Chr6:25046240-25046259 | None:intergenic | 40.0% | |
GGATCTCATGAATGTTGCTA+GGG | + | Chr6:25048710-25048729 | MsG0680031707.01.T01:intron | 40.0% | |
GTAGTAGCTACATCATGTGT+AGG | + | Chr6:25045953-25045972 | MsG0680031707.01.T01:five_prime_UTR | 40.0% | |
TCCATTAGTCCTCCCAATTT+CGG | + | Chr6:25048764-25048783 | MsG0680031707.01.T01:intron | 40.0% | |
TGAGTAGGACTAAGGTAGTT+CGG | + | Chr6:25047197-25047216 | MsG0680031707.01.T01:intron | 40.0% | |
TGCTTCAGGAACATAAGTGA+TGG | - | Chr6:25046241-25046260 | None:intergenic | 40.0% | |
TGTTCATTGGCAATGGAACA+GGG | - | Chr6:25049180-25049199 | None:intergenic | 40.0% | |
TTGTTCATTGGCAATGGAAC+AGG | - | Chr6:25049181-25049200 | None:intergenic | 40.0% | |
! | GCTTCATCAAGTGTTAGTCT+TGG | - | Chr6:25046279-25046298 | None:intergenic | 40.0% |
! | GGCTTTTGGATCTGGATTTA+AGG | + | Chr6:25049072-25049091 | MsG0680031707.01.T01:intron | 40.0% |
! | GTGAGTTTAGCTCAGTTGTT+GGG | + | Chr6:25047603-25047622 | MsG0680031707.01.T01:intron | 40.0% |
! | TGAGTTTTTCCGAAATTGGG+AGG | - | Chr6:25048776-25048795 | None:intergenic | 40.0% |
!! | ACTCGGTGTTAAACTATCGA+AGG | + | Chr6:25048689-25048708 | MsG0680031707.01.T01:intron | 40.0% |
!! | ACTGATATTTTGAGCGGCTA+CGG | - | Chr6:25048588-25048607 | None:intergenic | 40.0% |
!! | GATTTTAGAAAGGTCAGGTG+TGG | + | Chr6:25046212-25046231 | MsG0680031707.01.T01:CDS | 40.0% |
!! | TATCTGAAAGTGATGGTGGT+AGG | - | Chr6:25046411-25046430 | None:intergenic | 40.0% |
!! | TCATCAAGTGTTAGTCTTGG+TGG | - | Chr6:25046276-25046295 | None:intergenic | 40.0% |
!!! | TATTTTTTTCGGTAGTGGCC+GGG | - | Chr6:25047670-25047689 | None:intergenic | 40.0% |
ACAACTGAGCTAAACTCACG+AGG | - | Chr6:25047602-25047621 | None:intergenic | 45.0% | |
CCTACTCTCAAGTCATCCAT+CGG | + | Chr6:25048561-25048580 | MsG0680031707.01.T01:intron | 45.0% | |
CCTTAGTCCTACTCAGATAC+GGG | - | Chr6:25047192-25047211 | None:intergenic | 45.0% | |
CGATGGATGACTTGAGAGTA+GGG | - | Chr6:25048563-25048582 | None:intergenic | 45.0% | |
CGTACACACATAACATCGCT+CGG | + | Chr6:25048741-25048760 | MsG0680031707.01.T01:intron | 45.0% | |
CTTTGCCAAACGTCTTCTTG+AGG | + | Chr6:25046518-25046537 | MsG0680031707.01.T01:CDS | 45.0% | |
TCCGAAATTGGGAGGACTAA+TGG | - | Chr6:25048768-25048787 | None:intergenic | 45.0% | |
TGTCTCTTTCGAATGGGTGT+CGG | + | Chr6:25048534-25048553 | MsG0680031707.01.T01:intron | 45.0% | |
! | CAATTTTGCATGCATACGGG+CGG | + | Chr6:25048877-25048896 | MsG0680031707.01.T01:intron | 45.0% |
! | CGTGAGTTTAGCTCAGTTGT+TGG | + | Chr6:25047602-25047621 | MsG0680031707.01.T01:intron | 45.0% |
! | TGGCAAATGGCTTTTGGATC+TGG | + | Chr6:25049064-25049083 | MsG0680031707.01.T01:intron | 45.0% |
!!! | ATTTTTTTCGGTAGTGGCCG+GGG | - | Chr6:25047669-25047688 | None:intergenic | 45.0% |
!!! | ATATTTTTATTTTATCTAAA+AGG | + | Chr6:25046949-25046968 | MsG0680031707.01.T01:intron | 5.0% |
!!! | TTTTTTATTTGTATAAATTT+GGG | - | Chr6:25047372-25047391 | None:intergenic | 5.0% |
!!! | TTTTTTTATTTGTATAAATT+TGG | - | Chr6:25047373-25047392 | None:intergenic | 5.0% |
ACCCTCAAGCTCCAACCTAT+AGG | + | Chr6:25047166-25047185 | MsG0680031707.01.T01:intron | 50.0% | |
CCCGTATCTGAGTAGGACTA+AGG | + | Chr6:25047189-25047208 | MsG0680031707.01.T01:intron | 50.0% | |
CCGATGGATGACTTGAGAGT+AGG | - | Chr6:25048564-25048583 | None:intergenic | 50.0% | |
CTACTCAGATACGGGCCTAT+AGG | - | Chr6:25047184-25047203 | None:intergenic | 50.0% | |
CTATAGGCCCGTATCTGAGT+AGG | + | Chr6:25047182-25047201 | MsG0680031707.01.T01:intron | 50.0% | |
TCAGATACGGGCCTATAGGT+TGG | - | Chr6:25047180-25047199 | None:intergenic | 50.0% | |
! | GCCTATAGGTTGGAGCTTGA+GGG | - | Chr6:25047170-25047189 | None:intergenic | 50.0% |
!! | CAGTGCTGGTGTTATTGCAG+TGG | + | Chr6:25046494-25046513 | MsG0680031707.01.T01:CDS | 50.0% |
AAGATCCGGGGTTCAAACCC+CGG | + | Chr6:25047649-25047668 | MsG0680031707.01.T01:intron | 55.0% | |
AGTGGTATGGGATGCAGTGC+TGG | + | Chr6:25046480-25046499 | MsG0680031707.01.T01:CDS | 55.0% | |
GCGGTAGAGCGGTTCTTGAT+CGG | + | Chr6:25048896-25048915 | MsG0680031707.01.T01:intron | 55.0% | |
! | GGCCTATAGGTTGGAGCTTG+AGG | - | Chr6:25047171-25047190 | None:intergenic | 55.0% |
CATGCATACGGGCGGTAGAG+CGG | + | Chr6:25048885-25048904 | MsG0680031707.01.T01:intron | 60.0% | |
GCTTCGTTGCGCACTCACGT+AGG | + | Chr6:25048612-25048631 | MsG0680031707.01.T01:intron | 60.0% | |
TTTGAGCGGCTACGGTCCGA+TGG | - | Chr6:25048580-25048599 | None:intergenic | 60.0% | |
AGTGGCCGGGGTTTGAACCC+CGG | - | Chr6:25047657-25047676 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 25045829 | 25049219 | 25045829 | ID=MsG0680031707.01;Name=MsG0680031707.01 |
Chr6 | mRNA | 25045829 | 25049219 | 25045829 | ID=MsG0680031707.01.T01;Parent=MsG0680031707.01;Name=MsG0680031707.01.T01;_AED=0.40;_eAED=0.40;_QI=276|0|0.5|1|1|1|2|0|186 |
Chr6 | exon | 25045829 | 25046539 | 25045829 | ID=MsG0680031707.01.T01:exon:15407;Parent=MsG0680031707.01.T01 |
Chr6 | exon | 25049094 | 25049219 | 25049094 | ID=MsG0680031707.01.T01:exon:15408;Parent=MsG0680031707.01.T01 |
Chr6 | five_prime_UTR | 25045829 | 25046104 | 25045829 | ID=MsG0680031707.01.T01:five_prime_utr;Parent=MsG0680031707.01.T01 |
Chr6 | CDS | 25046105 | 25046539 | 25046105 | ID=MsG0680031707.01.T01:cds;Parent=MsG0680031707.01.T01 |
Chr6 | CDS | 25049094 | 25049219 | 25049094 | ID=MsG0680031707.01.T01:cds;Parent=MsG0680031707.01.T01 |
Gene Sequence |
Protein sequence |