Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018311.01.T01 | XP_003604338.1 | 96.581 | 117 | 4 | 0 | 1 | 117 | 1 | 117 | 1.16E-70 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018311.01.T01 | F4I171 | 59.167 | 120 | 34 | 3 | 1 | 105 | 1 | 120 | 1.33E-37 | 138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018311.01.T01 | G7JFS6 | 96.581 | 117 | 4 | 0 | 1 | 117 | 1 | 117 | 5.54e-71 | 241 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048602.01 | MsG0480018311.01 | 0.819150 | 1.350491e-52 | 1.030913e-49 |
| MsG0180000555.01 | MsG0480018311.01 | 0.807084 | 6.006970e-50 | 3.315058e-47 |
| MsG0180000741.01 | MsG0480018311.01 | 0.815103 | 1.097605e-51 | 7.497687e-49 |
| MsG0180002071.01 | MsG0480018311.01 | 0.805817 | 1.111370e-49 | 5.937504e-47 |
| MsG0180004598.01 | MsG0480018311.01 | 0.809716 | 1.649228e-50 | 9.755116e-48 |
| MsG0180005985.01 | MsG0480018311.01 | 0.813110 | 3.020799e-51 | 1.955017e-48 |
| MsG0180006186.01 | MsG0480018311.01 | 0.810520 | 1.106601e-50 | 6.684918e-48 |
| MsG0280006367.01 | MsG0480018311.01 | 0.809836 | 1.554302e-50 | 9.222562e-48 |
| MsG0280010932.01 | MsG0480018311.01 | 0.842876 | 1.978124e-58 | 3.040343e-55 |
| MsG0280011075.01 | MsG0480018311.01 | 0.816153 | 6.404644e-52 | 4.503143e-49 |
| MsG0380016589.01 | MsG0480018311.01 | 0.800044 | 1.733539e-48 | 7.991416e-46 |
| MsG0380017045.01 | MsG0480018311.01 | 0.803910 | 2.781629e-49 | 1.415000e-46 |
| MsG0480018311.01 | MsG0480021216.01 | 0.807468 | 4.981804e-50 | 2.777052e-47 |
| MsG0480018311.01 | MsG0480022552.01 | 0.808959 | 2.396389e-50 | 1.389070e-47 |
| MsG0480018311.01 | MsG0580025128.01 | 0.809349 | 1.976901e-50 | 1.158016e-47 |
| MsG0480018311.01 | MsG0580025900.01 | 0.803318 | 3.691721e-49 | 1.849392e-46 |
| MsG0480018311.01 | MsG0580029009.01 | 0.806964 | 6.368313e-50 | 3.503600e-47 |
| MsG0480018311.01 | MsG0580029036.01 | 0.803356 | 3.625795e-49 | 1.818104e-46 |
| MsG0480018311.01 | MsG0580029208.01 | 0.807486 | 4.937783e-50 | 2.753746e-47 |
| MsG0480018311.01 | MsG0780041033.01 | 0.806263 | 8.954842e-50 | 4.839023e-47 |
| MsG0480018311.01 | MsG0780041371.01 | 0.819039 | 1.431507e-52 | 1.089542e-49 |
| MsG0480018311.01 | MsG0880043750.01 | 0.811867 | 5.647611e-51 | 3.535725e-48 |
| MsG0480018311.01 | MsG0880045448.01 | 0.814715 | 1.338053e-51 | 9.045577e-49 |
| MsG0480018311.01 | MsG0880045841.01 | 0.812697 | 3.721258e-51 | 2.382277e-48 |
| MsG0280007726.01 | MsG0480018311.01 | 0.820652 | 6.124299e-53 | 4.874335e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018311.01.T01 | MTR_4g009740 | 96.581 | 117 | 4 | 0 | 1 | 117 | 1 | 117 | 1.41e-74 | 241 |
| MsG0480018311.01.T01 | MTR_4g009710 | 85.965 | 114 | 16 | 0 | 1 | 114 | 1 | 114 | 7.30e-68 | 207 |
| MsG0480018311.01.T01 | MTR_4g009710 | 82.292 | 96 | 17 | 0 | 1 | 96 | 120 | 215 | 1.18e-52 | 169 |
| MsG0480018311.01.T01 | MTR_4g009630 | 75.410 | 122 | 29 | 1 | 7 | 127 | 201 | 322 | 1.23e-59 | 187 |
| MsG0480018311.01.T01 | MTR_4g009630 | 81.481 | 108 | 20 | 0 | 7 | 114 | 201 | 308 | 2.00e-58 | 186 |
| MsG0480018311.01.T01 | MTR_2g104400 | 73.171 | 123 | 33 | 0 | 1 | 123 | 1 | 123 | 9.72e-57 | 190 |
| MsG0480018311.01.T01 | MTR_2g095920 | 76.786 | 112 | 26 | 0 | 1 | 112 | 1 | 112 | 4.02e-56 | 182 |
| MsG0480018311.01.T01 | MTR_2g104430 | 75.893 | 112 | 27 | 0 | 1 | 112 | 42 | 153 | 3.87e-54 | 179 |
| MsG0480018311.01.T01 | MTR_2g104430 | 71.429 | 112 | 26 | 1 | 1 | 112 | 1 | 106 | 7.12e-48 | 161 |
| MsG0480018311.01.T01 | MTR_2g104430 | 67.857 | 112 | 26 | 1 | 1 | 112 | 42 | 143 | 3.82e-44 | 152 |
| MsG0480018311.01.T01 | MTR_2g104400 | 73.256 | 86 | 23 | 0 | 38 | 123 | 1 | 86 | 3.17e-36 | 131 |
| MsG0480018311.01.T01 | MTR_2g104460 | 50.000 | 84 | 35 | 1 | 17 | 100 | 15 | 91 | 3.83e-20 | 79.3 |
| MsG0480018311.01.T01 | MTR_2g104420 | 61.538 | 52 | 20 | 0 | 9 | 60 | 139 | 190 | 4.31e-14 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018311.01.T01 | AT1G15780 | 59.167 | 120 | 34 | 3 | 1 | 105 | 1 | 120 | 1.35e-38 | 138 |
| MsG0480018311.01.T01 | AT1G15780 | 59.167 | 120 | 34 | 3 | 1 | 105 | 1 | 120 | 1.42e-38 | 138 |
| MsG0480018311.01.T01 | AT1G15780 | 59.167 | 120 | 34 | 3 | 1 | 105 | 23 | 142 | 1.57e-38 | 138 |
| MsG0480018311.01.T01 | AT1G15790 | 58.974 | 78 | 32 | 0 | 18 | 95 | 4 | 81 | 3.05e-24 | 92.4 |
| MsG0480018311.01.T01 | AT1G15790 | 50.000 | 82 | 39 | 1 | 7 | 88 | 100 | 179 | 5.01e-19 | 79.0 |
| MsG0480018311.01.T01 | AT1G15790 | 58.974 | 78 | 32 | 0 | 18 | 95 | 4 | 81 | 3.05e-24 | 92.4 |
| MsG0480018311.01.T01 | AT1G15790 | 50.000 | 82 | 39 | 1 | 7 | 88 | 100 | 179 | 5.01e-19 | 79.0 |
| MsG0480018311.01.T01 | AT1G15790 | 58.974 | 78 | 32 | 0 | 18 | 95 | 4 | 81 | 3.05e-24 | 92.4 |
| MsG0480018311.01.T01 | AT1G15790 | 50.000 | 82 | 39 | 1 | 7 | 88 | 100 | 179 | 5.01e-19 | 79.0 |
| MsG0480018311.01.T01 | AT1G15790 | 58.974 | 78 | 32 | 0 | 18 | 95 | 4 | 81 | 3.36e-24 | 92.4 |
| MsG0480018311.01.T01 | AT1G15790 | 45.588 | 68 | 35 | 1 | 7 | 74 | 100 | 165 | 8.42e-12 | 60.1 |
| MsG0480018311.01.T01 | AT1G15790 | 58.974 | 78 | 32 | 0 | 18 | 95 | 4 | 81 | 3.71e-24 | 92.0 |
| MsG0480018311.01.T01 | AT1G15790 | 46.591 | 88 | 39 | 2 | 7 | 88 | 100 | 185 | 1.92e-16 | 72.4 |
Find 33 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAACATCTTCCTGTTTC+TGG | 0.115105 | 4:+3192893 | MsG0480018311.01.T01:CDS |
| ATTTGATGGATTCCAATAAT+TGG | 0.150937 | 4:+3192066 | None:intergenic |
| CTGATTAGGAACCCAATTAT+TGG | 0.216290 | 4:-3192078 | None:intergenic |
| CAATAATTGGGTTCCTAATC+AGG | 0.230649 | 4:+3192079 | MsG0480018311.01.T01:CDS |
| AGGGAATTGGTGGTTGTATT+CGG | 0.281870 | 4:+3193449 | MsG0480018311.01.T01:CDS |
| CTGGGACCACCTTCATTTGA+TGG | 0.310661 | 4:-3193389 | None:intergenic |
| TTTGATGGATTCCAATAATT+GGG | 0.376606 | 4:+3192067 | None:intergenic |
| GGGAATTGGTGGTTGTATTC+GGG | 0.380697 | 4:+3193450 | MsG0480018311.01.T01:CDS |
| GTGGTTTCAGTACCCTGATT+AGG | 0.384477 | 4:-3192092 | None:intergenic |
| TAATTAAGATTTGCCAACTT+TGG | 0.401624 | 4:-3193480 | None:intergenic |
| TTCATTTGATGGCATATTGT+TGG | 0.405356 | 4:-3193378 | None:intergenic |
| ACAATTCTTTGGCGTTGATC+AGG | 0.409125 | 4:-3192149 | None:intergenic |
| CTTCCTGTTTCTGGTTCTGA+GGG | 0.410128 | 4:+3192902 | MsG0480018311.01.T01:CDS |
| CTGAGGGATTACTTGAACTT+CGG | 0.419882 | 4:+3192918 | MsG0480018311.01.T01:CDS |
| CCACTGCCGACACAGTTGAT+TGG | 0.450196 | 4:+3192111 | MsG0480018311.01.T01:CDS |
| TTGATCGGGCAGATTATTGC+TGG | 0.458444 | 4:-3193408 | None:intergenic |
| AATCCCTCAGAACCAGAAAC+AGG | 0.458662 | 4:-3192905 | None:intergenic |
| AAACATATGCTTACCTTGAT+CGG | 0.461524 | 4:-3193423 | None:intergenic |
| TCTTCCTGTTTCTGGTTCTG+AGG | 0.467921 | 4:+3192901 | MsG0480018311.01.T01:CDS |
| AGCAATAATCTGCCCGATCA+AGG | 0.468625 | 4:+3193410 | MsG0480018311.01.T01:CDS |
| CCAATCAACTGTGTCGGCAG+TGG | 0.479669 | 4:-3192111 | None:intergenic |
| AACAATATGCCATCAAATGA+AGG | 0.481749 | 4:+3193380 | MsG0480018311.01.T01:CDS |
| AACATATGCTTACCTTGATC+GGG | 0.491877 | 4:-3193422 | None:intergenic |
| TGATGGCATATTGTTGGCCA+TGG | 0.498558 | 4:-3193372 | None:intergenic |
| ATCTATGAAAATGCTAACAA+TGG | 0.530496 | 4:+3193331 | MsG0480018311.01.T01:CDS |
| TTCGGGTATGATACCAAAGT+TGG | 0.533650 | 4:+3193467 | MsG0480018311.01.T01:CDS |
| AATAATTGGGTTCCTAATCA+GGG | 0.550108 | 4:+3192080 | MsG0480018311.01.T01:CDS |
| TTATACTGCTGCGACAAGCC+AGG | 0.552982 | 4:+3192970 | MsG0480018311.01.T01:CDS |
| TGATCGGGCAGATTATTGCT+GGG | 0.590486 | 4:-3193407 | None:intergenic |
| AACTTCGGAAGATTGCTCAA+AGG | 0.591413 | 4:+3192933 | MsG0480018311.01.T01:CDS |
| AGTTCTCCAATCAACTGTGT+CGG | 0.623037 | 4:-3192117 | None:intergenic |
| AATATGCCATCAAATGAAGG+TGG | 0.682135 | 4:+3193383 | MsG0480018311.01.T01:CDS |
| GAATAAATCTCAAAACACCA+TGG | 0.684380 | 4:+3193355 | MsG0480018311.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCATTTCTTAATTTTCTT+TGG | - | Chr4:3192253-3192272 | None:intergenic | 15.0% |
| !! | AAATGAATCAAATAAGTTAG+AGG | + | Chr4:3193145-3193164 | MsG0480018311.01.T01:intron | 20.0% |
| !! | AATGAATCAAATAAGTTAGA+GGG | + | Chr4:3193146-3193165 | MsG0480018311.01.T01:intron | 20.0% |
| !! | TTCAAATTAATACTCAACTA+TGG | - | Chr4:3192576-3192595 | None:intergenic | 20.0% |
| !! | TTCAATTTCTGACAAATAAT+AGG | + | Chr4:3192442-3192461 | MsG0480018311.01.T01:intron | 20.0% |
| !!! | ACAATTTGTTTCAAAATGAT+TGG | - | Chr4:3192635-3192654 | None:intergenic | 20.0% |
| ! | AATGAGAATAACTGTTTGTT+AGG | - | Chr4:3193119-3193138 | None:intergenic | 25.0% |
| ! | ACAAAAGAAATCTTCAACAA+AGG | - | Chr4:3192297-3192316 | None:intergenic | 25.0% |
| ! | ATCTATGAAAATGCTAACAA+TGG | + | Chr4:3193331-3193350 | MsG0480018311.01.T01:CDS | 25.0% |
| ! | GTTTCTACTATATTGAACAT+CGG | + | Chr4:3193253-3193272 | MsG0480018311.01.T01:intron | 25.0% |
| ! | TTCATCTGAAAAATAATGAG+AGG | - | Chr4:3192474-3192493 | None:intergenic | 25.0% |
| !! | ACATTTTGTTGACAATTCTT+TGG | - | Chr4:3192163-3192182 | None:intergenic | 25.0% |
| !!! | GAAAATATTTGGTAGTGATT+CGG | - | Chr4:3192507-3192526 | None:intergenic | 25.0% |
| !!! | TCTCTATTTTTTTTGTTCTG+CGG | + | Chr4:3192726-3192745 | MsG0480018311.01.T01:intron | 25.0% |
| !!! | TGTTAGGACTGTTATTTTAT+AGG | - | Chr4:3193103-3193122 | None:intergenic | 25.0% |
| !!! | TTTTTTACTTCTTCCATTCT+TGG | - | Chr4:3192343-3192362 | None:intergenic | 25.0% |
| AAAAAAAGCAGTACGTTTAG+TGG | + | Chr4:3192363-3192382 | MsG0480018311.01.T01:intron | 30.0% | |
| AAACATATGCTTACCTTGAT+CGG | - | Chr4:3193426-3193445 | None:intergenic | 30.0% | |
| AACAATATGCCATCAAATGA+AGG | + | Chr4:3193380-3193399 | MsG0480018311.01.T01:CDS | 30.0% | |
| AATAATTGGGTTCCTAATCA+GGG | + | Chr4:3192080-3192099 | MsG0480018311.01.T01:CDS | 30.0% | |
| AGATAATCAGACTGAAAAGA+AGG | - | Chr4:3193302-3193321 | None:intergenic | 30.0% | |
| CAACAAAGGTTGTCAATTTA+TGG | - | Chr4:3192283-3192302 | None:intergenic | 30.0% | |
| GAATAAATCTCAAAACACCA+TGG | + | Chr4:3193355-3193374 | MsG0480018311.01.T01:CDS | 30.0% | |
| ! | AAGGTAAGCATATGTTTTCT+AGG | + | Chr4:3193429-3193448 | MsG0480018311.01.T01:CDS | 30.0% |
| ! | AGGTAAGCATATGTTTTCTA+GGG | + | Chr4:3193430-3193449 | MsG0480018311.01.T01:CDS | 30.0% |
| ! | ATCACTACCAAATATTTTCG+AGG | + | Chr4:3192508-3192527 | MsG0480018311.01.T01:intron | 30.0% |
| ! | TTCATTTGATGGCATATTGT+TGG | - | Chr4:3193381-3193400 | None:intergenic | 30.0% |
| !! | ATTGCTTTTCCTTTGTAGAA+TGG | + | Chr4:3192862-3192881 | MsG0480018311.01.T01:intron | 30.0% |
| !!! | CTCTATTTTTTTTGTTCTGC+GGG | + | Chr4:3192727-3192746 | MsG0480018311.01.T01:intron | 30.0% |
| AACATATGCTTACCTTGATC+GGG | - | Chr4:3193425-3193444 | None:intergenic | 35.0% | |
| AATATGCCATCAAATGAAGG+TGG | + | Chr4:3193383-3193402 | MsG0480018311.01.T01:CDS | 35.0% | |
| AGAAAACATCTTCCTGTTTC+TGG | + | Chr4:3192893-3192912 | MsG0480018311.01.T01:CDS | 35.0% | |
| AGCATGCTAAAAATCATGCA+TGG | - | Chr4:3192535-3192554 | None:intergenic | 35.0% | |
| CAATAATTGGGTTCCTAATC+AGG | + | Chr4:3192079-3192098 | MsG0480018311.01.T01:CDS | 35.0% | |
| CACAAACACAACAAGATTAG+CGG | - | Chr4:3192795-3192814 | None:intergenic | 35.0% | |
| CAGTGTCAATATTGTATCAG+AGG | + | Chr4:3192189-3192208 | MsG0480018311.01.T01:intron | 35.0% | |
| CATCGATGAATGATTATCCT+TGG | + | Chr4:3192671-3192690 | MsG0480018311.01.T01:intron | 35.0% | |
| CTCTTTCTCAAAGATAGCAT+AGG | + | Chr4:3193231-3193250 | MsG0480018311.01.T01:intron | 35.0% | |
| CTGATTAGGAACCCAATTAT+TGG | - | Chr4:3192081-3192100 | None:intergenic | 35.0% | |
| GATGCAATTCTATCCAAGAA+TGG | + | Chr4:3192327-3192346 | MsG0480018311.01.T01:intron | 35.0% | |
| TCGGTTATTTAACTCGATAC+TGG | + | Chr4:3193272-3193291 | MsG0480018311.01.T01:intron | 35.0% | |
| TTAACGTGTCCATTCTACAA+AGG | - | Chr4:3192874-3192893 | None:intergenic | 35.0% | |
| TTCAACTACTGTCTGTTTAG+AGG | - | Chr4:3192703-3192722 | None:intergenic | 35.0% | |
| ! | TTTTAGCATGCTTAGGTTAG+CGG | + | Chr4:3192543-3192562 | MsG0480018311.01.T01:intron | 35.0% |
| !! | GCATATGTTTTCTAGGGAAT+TGG | + | Chr4:3193436-3193455 | MsG0480018311.01.T01:CDS | 35.0% |
| !! | TATGTTTTCTAGGGAATTGG+TGG | + | Chr4:3193439-3193458 | MsG0480018311.01.T01:CDS | 35.0% |
| !!! | ATTTTTTTTGTTCTGCGGGT+GGG | + | Chr4:3192731-3192750 | MsG0480018311.01.T01:intron | 35.0% |
| !!! | GCATGATTTTTAGCATGCTT+AGG | + | Chr4:3192536-3192555 | MsG0480018311.01.T01:intron | 35.0% |
| !!! | TATTTTTTTTGTTCTGCGGG+TGG | + | Chr4:3192730-3192749 | MsG0480018311.01.T01:intron | 35.0% |
| AACTTCGGAAGATTGCTCAA+AGG | + | Chr4:3192933-3192952 | MsG0480018311.01.T01:CDS | 40.0% | |
| AGTTCTCCAATCAACTGTGT+CGG | - | Chr4:3192120-3192139 | None:intergenic | 40.0% | |
| CTGAGGGATTACTTGAACTT+CGG | + | Chr4:3192918-3192937 | MsG0480018311.01.T01:CDS | 40.0% | |
| GCAGTCTCTACTTTCATTCA+TGG | + | Chr4:3193014-3193033 | MsG0480018311.01.T01:intron | 40.0% | |
| GCATGGACCTCGAAAATATT+TGG | - | Chr4:3192518-3192537 | None:intergenic | 40.0% | |
| GTACTCGTAATGAATGTACC+TGG | - | Chr4:3192991-3193010 | None:intergenic | 40.0% | |
| TGACAGAGATGTTCAGACAA+TGG | - | Chr4:3192818-3192837 | None:intergenic | 40.0% | |
| TTCGGGTATGATACCAAAGT+TGG | + | Chr4:3193467-3193486 | MsG0480018311.01.T01:CDS | 40.0% | |
| ! | AGGGAATTGGTGGTTGTATT+CGG | + | Chr4:3193449-3193468 | MsG0480018311.01.T01:CDS | 40.0% |
| !! | ACAATTCTTTGGCGTTGATC+AGG | - | Chr4:3192152-3192171 | None:intergenic | 40.0% |
| !!! | TTTTTTTTGTTCTGCGGGTG+GGG | + | Chr4:3192732-3192751 | MsG0480018311.01.T01:intron | 40.0% |
| AATCCCTCAGAACCAGAAAC+AGG | - | Chr4:3192908-3192927 | None:intergenic | 45.0% | |
| AGCAATAATCTGCCCGATCA+AGG | + | Chr4:3193410-3193429 | MsG0480018311.01.T01:CDS | 45.0% | |
| AGGTTATACGCAGCTACAGT+AGG | - | Chr4:3193083-3193102 | None:intergenic | 45.0% | |
| CTGTTTAGAGGACAGATCCA+AGG | - | Chr4:3192691-3192710 | None:intergenic | 45.0% | |
| GTGGTTTCAGTACCCTGATT+AGG | - | Chr4:3192095-3192114 | None:intergenic | 45.0% | |
| TGATCGGGCAGATTATTGCT+GGG | - | Chr4:3193410-3193429 | None:intergenic | 45.0% | |
| TGATGGCATATTGTTGGCCA+TGG | - | Chr4:3193375-3193394 | None:intergenic | 45.0% | |
| TTGATCGGGCAGATTATTGC+TGG | - | Chr4:3193411-3193430 | None:intergenic | 45.0% | |
| ! | GGGAATTGGTGGTTGTATTC+GGG | + | Chr4:3193450-3193469 | MsG0480018311.01.T01:CDS | 45.0% |
| !! | CTTCCTGTTTCTGGTTCTGA+GGG | + | Chr4:3192902-3192921 | MsG0480018311.01.T01:CDS | 45.0% |
| !! | TCTTCCTGTTTCTGGTTCTG+AGG | + | Chr4:3192901-3192920 | MsG0480018311.01.T01:CDS | 45.0% |
| !!! | TTTTTTTGTTCTGCGGGTGG+GGG | + | Chr4:3192733-3192752 | MsG0480018311.01.T01:intron | 45.0% |
| CTGGGACCACCTTCATTTGA+TGG | - | Chr4:3193392-3193411 | None:intergenic | 50.0% | |
| TTATACTGCTGCGACAAGCC+AGG | + | Chr4:3192970-3192989 | MsG0480018311.01.T01:CDS | 50.0% | |
| CCACTGCCGACACAGTTGAT+TGG | + | Chr4:3192111-3192130 | MsG0480018311.01.T01:CDS | 55.0% | |
| ! | CCAATCAACTGTGTCGGCAG+TGG | - | Chr4:3192114-3192133 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 3192071 | 3193499 | 3192071 | ID=MsG0480018311.01;Name=MsG0480018311.01 |
| Chr4 | mRNA | 3192071 | 3193499 | 3192071 | ID=MsG0480018311.01.T01;Parent=MsG0480018311.01;Name=MsG0480018311.01.T01;_AED=0.49;_eAED=0.51;_QI=0|1|0.66|1|1|1|3|0|136 |
| Chr4 | exon | 3192071 | 3192180 | 3192071 | ID=MsG0480018311.01.T01:exon:1332;Parent=MsG0480018311.01.T01 |
| Chr4 | exon | 3192880 | 3192991 | 3192880 | ID=MsG0480018311.01.T01:exon:1333;Parent=MsG0480018311.01.T01 |
| Chr4 | exon | 3193311 | 3193499 | 3193311 | ID=MsG0480018311.01.T01:exon:1334;Parent=MsG0480018311.01.T01 |
| Chr4 | CDS | 3192071 | 3192180 | 3192071 | ID=MsG0480018311.01.T01:cds;Parent=MsG0480018311.01.T01 |
| Chr4 | CDS | 3192880 | 3192991 | 3192880 | ID=MsG0480018311.01.T01:cds;Parent=MsG0480018311.01.T01 |
| Chr4 | CDS | 3193311 | 3193499 | 3193311 | ID=MsG0480018311.01.T01:cds;Parent=MsG0480018311.01.T01 |
| Gene Sequence |
| Protein sequence |
