AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041371.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041371.01.T01 MTR_7g109730 96.923 130 4 0 1 130 1 130 2.55e-83 265
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041371.01.T01 AT3G62360 69.919 123 37 0 8 130 11 133 5.64e-58 194
MsG0780041371.01.T01 AT3G62360 69.919 123 37 0 8 130 11 133 5.93e-58 193

Find 42 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTTGTAATTAAAGTTAA+TGG 0.170602 7:+90139943 MsG0780041371.01.T01:CDS
TTTGGCATCCGTTTGTTTCC+TGG 0.227971 7:-90139317 None:intergenic
GCTTCTGCTGATTCCATCTA+TGG 0.268002 7:+90139081 MsG0780041371.01.T01:CDS
GAAACAAACGGATGCCAAAT+TGG 0.314612 7:+90139321 MsG0780041371.01.T01:CDS
GACATGTGAATAATCCAATT+TGG 0.330019 7:-90139335 None:intergenic
ATCGCAGGCGAGTTCATCTT+TGG 0.358289 7:+90139288 MsG0780041371.01.T01:intron
GAATCCACCGCAGCCATAGA+TGG 0.409957 7:-90139094 None:intergenic
AAGAAATAACAAACCTTCTC+AGG 0.410403 7:-90139988 None:intergenic
GATGGCCTTCGCCTTTCTCT+AGG 0.422928 7:-90135863 None:intergenic
TGGCTGCGGTGGATTCGTTC+AGG 0.426968 7:+90139101 MsG0780041371.01.T01:CDS
AGAGAAAGGCGAAGGCCATC+AGG 0.465859 7:+90135866 MsG0780041371.01.T01:five_prime_UTR
ATGGACCTGATGGGTGGTCA+TGG 0.468727 7:+90139962 MsG0780041371.01.T01:CDS
AAGGCGAAGGCCATCAGGTT+GGG 0.481451 7:+90135871 MsG0780041371.01.T01:five_prime_UTR
GGAATAAAATAGTACCCGTT+AGG 0.496115 7:-90139792 None:intergenic
GCTTCAAACCGTGGATGGAT+TGG 0.500914 7:+90139746 MsG0780041371.01.T01:CDS
TCCATTAACTTTAATTACAA+AGG 0.504858 7:-90139944 None:intergenic
AACCGTGGATGGATTGGTAA+AGG 0.509918 7:+90139752 MsG0780041371.01.T01:CDS
GAACACAATGTGCTCCTAAC+GGG 0.513649 7:+90139778 MsG0780041371.01.T01:CDS
GGATCCCATGACCACCCATC+AGG 0.514368 7:-90139967 None:intergenic
GTTCATCTTTGGTGAAGTCC+AGG 0.533922 7:+90139299 MsG0780041371.01.T01:CDS
GTTGAGCTTCAAACCGTGGA+TGG 0.535663 7:+90139741 MsG0780041371.01.T01:CDS
GGTGAAGTCCAGGAAACAAA+CGG 0.538937 7:+90139309 MsG0780041371.01.T01:CDS
ATCCTTTACCAATCCATCCA+CGG 0.540905 7:-90139754 None:intergenic
AAAGGCGAAGGCCATCAGGT+TGG 0.560748 7:+90135870 MsG0780041371.01.T01:five_prime_UTR
ATTAAAGTTAATGGACCTGA+TGG 0.563941 7:+90139952 MsG0780041371.01.T01:CDS
TGGACCTGATGGGTGGTCAT+GGG 0.566074 7:+90139963 MsG0780041371.01.T01:CDS
GCTGATTCCATCTATGGCTG+CGG 0.580408 7:+90139087 MsG0780041371.01.T01:CDS
TTGTGAGGAATAGTAAACAT+AGG 0.582720 7:-90139041 None:intergenic
CCTGTGGTAGTTGACAATCA+AGG 0.585283 7:+90140190 MsG0780041371.01.T01:CDS
GATTCCATCTATGGCTGCGG+TGG 0.592582 7:+90139090 MsG0780041371.01.T01:CDS
AGAACACAATGTGCTCCTAA+CGG 0.592633 7:+90139777 MsG0780041371.01.T01:CDS
CCTTGATTGTCAACTACCAC+AGG 0.598295 7:-90140190 None:intergenic
GTGGTCATGGGATCCTGAGA+AGG 0.604450 7:+90139975 MsG0780041371.01.T01:CDS
GCAGTTCTAAACCTAGAGAA+AGG 0.605177 7:+90135852 MsG0780041371.01.T01:five_prime_UTR
CTCAGATCGGAAATGTCGAT+CGG 0.614098 7:+90139009 MsG0780041371.01.T01:intron
CTTATCTGTATAGGTTCCTG+TGG 0.615542 7:+90140174 MsG0780041371.01.T01:intron
AACTATCTATCCCAACCTGA+TGG 0.619017 7:-90135881 None:intergenic
CTGAAATTGAATAAGTTGTG+AGG 0.620052 7:-90139056 None:intergenic
TTAAAGTTAATGGACCTGAT+GGG 0.630255 7:+90139953 MsG0780041371.01.T01:CDS
CTAAACCTAGAGAAAGGCGA+AGG 0.655176 7:+90135858 MsG0780041371.01.T01:five_prime_UTR
GTAGGTTGAGCTTCAAACCG+TGG 0.663440 7:+90139737 MsG0780041371.01.T01:intron
AAGTTAATGGACCTGATGGG+TGG 0.666461 7:+90139956 MsG0780041371.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCATATCTAATTAATAAT+AGG - Chr7:90139674-90139693 None:intergenic 10.0%
!!! AATATTTTTTAAAACAATGT+AGG - Chr7:90137814-90137833 None:intergenic 10.0%
!!! TATTTATTTTAATTACTATC+GGG + Chr7:90139228-90139247 MsG0780041371.01.T01:intron 10.0%
!! TATGAATTAAAATGAAATGA+TGG + Chr7:90136987-90137006 MsG0780041371.01.T01:intron 15.0%
!!! ATTTATTTTAATTACTATCG+GGG + Chr7:90139229-90139248 MsG0780041371.01.T01:intron 15.0%
!!! CAACAAATTTTGTTTTTTTA+GGG - Chr7:90138756-90138775 None:intergenic 15.0%
!!! GTTTATTATTTGATACTTTT+TGG + Chr7:90139603-90139622 MsG0780041371.01.T01:intron 15.0%
!!! TCAACAAATTTTGTTTTTTT+AGG - Chr7:90138757-90138776 None:intergenic 15.0%
!!! TTTTTTGTTGTTTTTTTTGA+AGG + Chr7:90137666-90137685 MsG0780041371.01.T01:intron 15.0%
!! AAGCAAAATAGATAAAAACA+TGG - Chr7:90138227-90138246 None:intergenic 20.0%
!! AATTGAATAAACCTAGAAAT+TGG + Chr7:90138002-90138021 MsG0780041371.01.T01:intron 20.0%
!! AGAAAGAAAGATAATAAGAA+AGG + Chr7:90138413-90138432 MsG0780041371.01.T01:intron 20.0%
!! AGCAAAATAGATAAAAACAT+GGG - Chr7:90138226-90138245 None:intergenic 20.0%
!! AGGCAAAAATAAAATGTATT+TGG + Chr7:90138433-90138452 MsG0780041371.01.T01:intron 20.0%
!! CATTCATTAAATGATGTATT+TGG - Chr7:90138472-90138491 None:intergenic 20.0%
!! TCCATTAACTTTAATTACAA+AGG - Chr7:90139947-90139966 None:intergenic 20.0%
!! TCCTTTGTAATTAAAGTTAA+TGG + Chr7:90139943-90139962 MsG0780041371.01.T01:CDS 20.0%
!! TTACGTTGAAAAATAAGAAA+AGG + Chr7:90138522-90138541 MsG0780041371.01.T01:intron 20.0%
!! TTGCTTAATTGATAAGTTAA+AGG + Chr7:90138321-90138340 MsG0780041371.01.T01:intron 20.0%
!!! AAAAGTATTTTCAAAAGTTG+TGG - Chr7:90137444-90137463 None:intergenic 20.0%
!!! ATATAAATTTTCGTTTCACA+GGG + Chr7:90140230-90140249 MsG0780041371.01.T01:CDS 20.0%
!!! TATGTTTGTATGAAAGTTTT+AGG - Chr7:90137889-90137908 None:intergenic 20.0%
!!! TATTGTTTTGAATTCAAGAT+AGG - Chr7:90137371-90137390 None:intergenic 20.0%
!!! TATTTTGATTGTTAAGCATT+CGG + Chr7:90139172-90139191 MsG0780041371.01.T01:intron 20.0%
! AACAAAAACATGCTATTAAC+CGG - Chr7:90136525-90136544 None:intergenic 25.0%
! AATTAAAATGAAATGATGGC+TGG + Chr7:90136991-90137010 MsG0780041371.01.T01:intron 25.0%
! AGAATTCAACAAAGATGTTA+AGG - Chr7:90137227-90137246 None:intergenic 25.0%
! ATATGGAATTGGACATTATT+AGG - Chr7:90138123-90138142 None:intergenic 25.0%
! ATCTAGACGAACAAAATTAA+TGG + Chr7:90137415-90137434 MsG0780041371.01.T01:intron 25.0%
! ATGGTTCTTTAAATTGAAAC+TGG - Chr7:90136742-90136761 None:intergenic 25.0%
! ATTGAAGAATTCAATAAGAG+AGG - Chr7:90137286-90137305 None:intergenic 25.0%
! CAGAAAAAATAATGACACAT+AGG - Chr7:90140088-90140107 None:intergenic 25.0%
! CTTGAAAACTTTATGTTACT+AGG + Chr7:90136782-90136801 MsG0780041371.01.T01:intron 25.0%
! GATGTATTTGGTCTATAATA+TGG - Chr7:90138460-90138479 None:intergenic 25.0%
! GGCAAAACAAAAACAAAAAA+TGG - Chr7:90136658-90136677 None:intergenic 25.0%
! GGTAATATTTGTAGTAACTT+CGG + Chr7:90138818-90138837 MsG0780041371.01.T01:intron 25.0%
! GTAATATTTGTAGTAACTTC+GGG + Chr7:90138819-90138838 MsG0780041371.01.T01:intron 25.0%
! GTCATTCTCCTTAATAATTA+GGG - Chr7:90138062-90138081 None:intergenic 25.0%
! TAAGCAAAAATCCAATTTCT+AGG - Chr7:90138016-90138035 None:intergenic 25.0%
! TAATATTTGTAGTAACTTCG+GGG + Chr7:90138820-90138839 MsG0780041371.01.T01:intron 25.0%
! TATAGAAACAACTTATTCGT+AGG + Chr7:90139563-90139582 MsG0780041371.01.T01:intron 25.0%
! TATTATCAATTGATAGAGCA+TGG + Chr7:90135988-90136007 MsG0780041371.01.T01:intron 25.0%
! TCAAATATACAAAAATCTCC+TGG - Chr7:90136630-90136649 None:intergenic 25.0%
! TCAACTTTGGCATTTATATT+AGG + Chr7:90139868-90139887 MsG0780041371.01.T01:intron 25.0%
! TGGTTCTTTAAATTGAAACT+GGG - Chr7:90136741-90136760 None:intergenic 25.0%
! TGTCTTAAGCAAAATATTTG+AGG + Chr7:90136285-90136304 MsG0780041371.01.T01:intron 25.0%
!! AAGATTAAGTGATGATGTTA+AGG - Chr7:90138294-90138313 None:intergenic 25.0%
!! AATAAGAAAAGGTGGTATTT+TGG + Chr7:90138533-90138552 MsG0780041371.01.T01:intron 25.0%
!! AATTTTGTTCGTCTAGATTT+TGG - Chr7:90137413-90137432 None:intergenic 25.0%
!! GATATAAATTTTCGTTTCAC+AGG + Chr7:90140229-90140248 MsG0780041371.01.T01:CDS 25.0%
!! GTGTATATATAAGCATTTTC+TGG + Chr7:90139845-90139864 MsG0780041371.01.T01:intron 25.0%
!! TCATTGGTGAAATTTTATCA+TGG + Chr7:90140013-90140032 MsG0780041371.01.T01:intron 25.0%
!! TTTTTGCTTATATTAGTGAC+CGG - Chr7:90137918-90137937 None:intergenic 25.0%
!!! AAACAGATCCTTAGTTTTAA+GGG - Chr7:90137603-90137622 None:intergenic 25.0%
!!! AGTAACATAAAGTTTTCAAG+AGG - Chr7:90136782-90136801 None:intergenic 25.0%
!!! ATTGTATTGAGTACTGAAAA+AGG + Chr7:90136038-90136057 MsG0780041371.01.T01:intron 25.0%
!!! GAAATGGATTTTTCTATTGT+AGG + Chr7:90139719-90139738 MsG0780041371.01.T01:intron 25.0%
!!! GGTATATTTTTCAATCTCAA+CGG + Chr7:90137072-90137091 MsG0780041371.01.T01:intron 25.0%
!!! GTCATTATTTTTTCTGAATC+TGG + Chr7:90140092-90140111 MsG0780041371.01.T01:intron 25.0%
!!! GTTTGTTATTTCTTTGTCAT+TGG + Chr7:90139997-90140016 MsG0780041371.01.T01:intron 25.0%
!!! TAAACAGATCCTTAGTTTTA+AGG - Chr7:90137604-90137623 None:intergenic 25.0%
!!! TTGTTGTTTTTTTTGAAGGA+AGG + Chr7:90137670-90137689 MsG0780041371.01.T01:intron 25.0%
!!! TTTCACCAACAATTTTGAAA+GGG - Chr7:90136482-90136501 None:intergenic 25.0%
AAACTAAGGATCTGTTTATG+AGG + Chr7:90137606-90137625 MsG0780041371.01.T01:intron 30.0%
AACTAAGGATCTGTTTATGA+GGG + Chr7:90137607-90137626 MsG0780041371.01.T01:intron 30.0%
AACTTTATGTTACTAGGTGT+AGG + Chr7:90136788-90136807 MsG0780041371.01.T01:intron 30.0%
AAGAAATAACAAACCTTCTC+AGG - Chr7:90139991-90140010 None:intergenic 30.0%
AAGAGGACTATAATTGAATC+TGG - Chr7:90136765-90136784 None:intergenic 30.0%
ACTTTATGTTACTAGGTGTA+GGG + Chr7:90136789-90136808 MsG0780041371.01.T01:intron 30.0%
ATTCACAACTTGTGTTGAAA+TGG + Chr7:90139703-90139722 MsG0780041371.01.T01:intron 30.0%
CAAAGCAAAATTACCATGTA+AGG + Chr7:90136570-90136589 MsG0780041371.01.T01:intron 30.0%
CGTTGAAAAATAAGAAAAGG+TGG + Chr7:90138525-90138544 MsG0780041371.01.T01:intron 30.0%
CTGAAATTGAATAAGTTGTG+AGG - Chr7:90139059-90139078 None:intergenic 30.0%
CTTAAATGGTCATATGGAAT+TGG - Chr7:90138134-90138153 None:intergenic 30.0%
GAACCATCTTATAATAGTGA+CGG + Chr7:90138491-90138510 MsG0780041371.01.T01:intron 30.0%
GACATGTGAATAATCCAATT+TGG - Chr7:90139338-90139357 None:intergenic 30.0%
GCTTCAGAATAAAATTGCAT+AGG - Chr7:90139473-90139492 None:intergenic 30.0%
GGTCATTCTCCTTAATAATT+AGG - Chr7:90138063-90138082 None:intergenic 30.0%
GGTGTATACCCTAATTATTA+AGG + Chr7:90138051-90138070 MsG0780041371.01.T01:intron 30.0%
GTACTACACTCTCAAAATAT+TGG + Chr7:90136253-90136272 MsG0780041371.01.T01:intron 30.0%
GTATGAATGCTCATATTTGT+AGG + Chr7:90135940-90135959 MsG0780041371.01.T01:intron 30.0%
TAAGCAAAAATCCACTTTCT+AGG + Chr7:90137928-90137947 MsG0780041371.01.T01:intron 30.0%
TATTGAATGAACCTAGAAAG+TGG - Chr7:90137942-90137961 None:intergenic 30.0%
TGCTTATATTAGTGATCAGA+GGG + Chr7:90138030-90138049 MsG0780041371.01.T01:intron 30.0%
TTACACCCTTTCAAAATTGT+TGG + Chr7:90136474-90136493 MsG0780041371.01.T01:intron 30.0%
TTGCTTATATTAGTGATCAG+AGG + Chr7:90138029-90138048 MsG0780041371.01.T01:intron 30.0%
TTGTGAGGAATAGTAAACAT+AGG - Chr7:90139044-90139063 None:intergenic 30.0%
TTTGGCATTTATATTAGGTG+TGG + Chr7:90139873-90139892 MsG0780041371.01.T01:intron 30.0%
! AATTTAAAGTCTTGTGTGCA+TGG + Chr7:90137169-90137188 MsG0780041371.01.T01:intron 30.0%
! ACGACAAGGTAAAATTTTCA+TGG + Chr7:90139820-90139839 MsG0780041371.01.T01:intron 30.0%
! AGTTCTTTTAGTGTGCAAAA+CGG - Chr7:90136354-90136373 None:intergenic 30.0%
! ATTAAAGTTAATGGACCTGA+TGG + Chr7:90139952-90139971 MsG0780041371.01.T01:CDS 30.0%
! CTTTCACCAACAATTTTGAA+AGG - Chr7:90136483-90136502 None:intergenic 30.0%
! GAATTTAACTTTGCCTTCTT+TGG - Chr7:90138648-90138667 None:intergenic 30.0%
! TGTTTATGAGGGATTTTAAG+AGG + Chr7:90137618-90137637 MsG0780041371.01.T01:intron 30.0%
! TTAAAGTTAATGGACCTGAT+GGG + Chr7:90139953-90139972 MsG0780041371.01.T01:CDS 30.0%
! TTTTGCACACTAAAAGAACT+AGG + Chr7:90136354-90136373 MsG0780041371.01.T01:intron 30.0%
!! GATGTATGTAGTCTTATTGT+AGG - Chr7:90137979-90137998 None:intergenic 30.0%
!! GTTTATGAGGGATTTTAAGA+GGG + Chr7:90137619-90137638 MsG0780041371.01.T01:intron 30.0%
!! TAACGGGTACTATTTTATTC+CGG + Chr7:90139794-90139813 MsG0780041371.01.T01:CDS 30.0%
!!! ACGCATTTATTTTTTGTCGT+AGG + Chr7:90139918-90139937 MsG0780041371.01.T01:intron 30.0%
!!! ATTTTAAGAGGGTTTTGAAG+GGG + Chr7:90137630-90137649 MsG0780041371.01.T01:intron 30.0%
!!! CGCATTTATTTTTTGTCGTA+GGG + Chr7:90139919-90139938 MsG0780041371.01.T01:intron 30.0%
!!! GAACAAAAATTGTTTTAGCG+AGG + Chr7:90138578-90138597 MsG0780041371.01.T01:intron 30.0%
!!! GACATTTTTTGGTTGTAAAG+AGG + Chr7:90136443-90136462 MsG0780041371.01.T01:intron 30.0%
!!! GATTTTAAGAGGGTTTTGAA+GGG + Chr7:90137629-90137648 MsG0780041371.01.T01:intron 30.0%
!!! TGTTTTTTTTGAAGGAAGGA+AGG + Chr7:90137674-90137693 MsG0780041371.01.T01:intron 30.0%
AAAAATGTCTCCCTGTGAAA+AGG - Chr7:90136432-90136451 None:intergenic 35.0%
AAATCTCAACATCCACGAAT+CGG + Chr7:90136165-90136184 MsG0780041371.01.T01:intron 35.0%
AACTGAACAAGTTTCCACAT+GGG - Chr7:90138162-90138181 None:intergenic 35.0%
ACAGGAACCTATACAGATAA+GGG - Chr7:90140175-90140194 None:intergenic 35.0%
ACCAACAAAATATCTACCGA+GGG - Chr7:90138696-90138715 None:intergenic 35.0%
ACTCATGCCATCATTATTCT+GGG - Chr7:90136140-90136159 None:intergenic 35.0%
ACTCCGTCACTATTATAAGA+TGG - Chr7:90138497-90138516 None:intergenic 35.0%
AGCAGAAGAAAAAGAGAAAG+TGG - Chr7:90136232-90136251 None:intergenic 35.0%
AGCTAGACAATTGGGTTTAT+GGG - Chr7:90138884-90138903 None:intergenic 35.0%
ATGCAGTAGTATGAGATGTT+TGG - Chr7:90138084-90138103 None:intergenic 35.0%
ATGTTAAGGACTAATGCGAT+AGG - Chr7:90138280-90138299 None:intergenic 35.0%
CAAATCAAACCAGATCTTAG+AGG - Chr7:90138970-90138989 None:intergenic 35.0%
CAGAATAAAATTGCATAGGC+TGG - Chr7:90139469-90139488 None:intergenic 35.0%
GAAATCCTCCCTTAAAACTA+AGG + Chr7:90137592-90137611 MsG0780041371.01.T01:intron 35.0%
GAGCATCTTAAATGGTCATA+TGG - Chr7:90138140-90138159 None:intergenic 35.0%
GCAGAAGAAAAAGAGAAAGT+GGG - Chr7:90136231-90136250 None:intergenic 35.0%
GGAATAAAATAGTACCCGTT+AGG - Chr7:90139795-90139814 None:intergenic 35.0%
GGACTATAATTGAATCTGGA+TGG - Chr7:90136761-90136780 None:intergenic 35.0%
TAACTGAACAAGTTTCCACA+TGG - Chr7:90138163-90138182 None:intergenic 35.0%
TACCAACAAAATATCTACCG+AGG - Chr7:90138697-90138716 None:intergenic 35.0%
TACCACATCATATCACATAC+CGG - Chr7:90137056-90137075 None:intergenic 35.0%
TATTGAGTGATATGAACCCT+CGG + Chr7:90138677-90138696 MsG0780041371.01.T01:intron 35.0%
TGATTGAAGCAACTACAAAG+TGG - Chr7:90136679-90136698 None:intergenic 35.0%
! AAATTTTCGTTTCACAGGGT+TGG + Chr7:90140234-90140253 MsG0780041371.01.T01:CDS 35.0%
! ACTTTCTCTTTTTCTTCTGC+TGG + Chr7:90136231-90136250 MsG0780041371.01.T01:intron 35.0%
! ATACTTTTCCAAGTCTGTTG+AGG + Chr7:90137456-90137475 MsG0780041371.01.T01:intron 35.0%
! ATCATATCACATACCGGTTA+TGG - Chr7:90137050-90137069 None:intergenic 35.0%
! GATATTTTCGTTGTTATCGC+AGG + Chr7:90139273-90139292 MsG0780041371.01.T01:intron 35.0%
! GGTGAAGTCTTGATTTGATT+TGG + Chr7:90135961-90135980 MsG0780041371.01.T01:intron 35.0%
! TCATATCACATACCGGTTAT+GGG - Chr7:90137049-90137068 None:intergenic 35.0%
! TCGGTAGATATTTTGTTGGT+AGG + Chr7:90138696-90138715 MsG0780041371.01.T01:intron 35.0%
! TTTAACTTTGCCTTCTTTGG+TGG - Chr7:90138645-90138664 None:intergenic 35.0%
! TTTTCTGAATCTGGACATAG+TGG + Chr7:90140101-90140120 MsG0780041371.01.T01:intron 35.0%
!! AAGCATTTTCTGGTCAACTT+TGG + Chr7:90139855-90139874 MsG0780041371.01.T01:intron 35.0%
!! CGGTAATTTGTTTCCTTACA+TGG - Chr7:90136586-90136605 None:intergenic 35.0%
!! GGATTTTAAGAGGGTTTTGA+AGG + Chr7:90137628-90137647 MsG0780041371.01.T01:intron 35.0%
!! TATTCTGAAGCTCTTGAAGA+TGG + Chr7:90139482-90139501 MsG0780041371.01.T01:intron 35.0%
!!! ATGAAAGTTTTAGGAGCAGA+AGG - Chr7:90137880-90137899 None:intergenic 35.0%
!!! TTTCACAGGGAGACATTTTT+TGG + Chr7:90136432-90136451 MsG0780041371.01.T01:intron 35.0%
AAAAGAGAAAGTGGGAGAGT+TGG - Chr7:90136223-90136242 None:intergenic 40.0%
AACATGCTATTAACCGGACT+AGG - Chr7:90136519-90136538 None:intergenic 40.0%
AACCGGTATGTGATATGATG+TGG + Chr7:90137051-90137070 MsG0780041371.01.T01:intron 40.0%
AACTATCTATCCCAACCTGA+TGG - Chr7:90135884-90135903 None:intergenic 40.0%
AAGGTTGCATGTTGACAACA+AGG + Chr7:90137536-90137555 MsG0780041371.01.T01:intron 40.0%
AATCGCAGAAGAGAAAGAGT+AGG - Chr7:90139150-90139169 None:intergenic 40.0%
ACATCTCATACTACTGCATG+TGG + Chr7:90138085-90138104 MsG0780041371.01.T01:intron 40.0%
ACGTCATAGTAACCCATAAC+CGG + Chr7:90137034-90137053 MsG0780041371.01.T01:intron 40.0%
ACTGGGAAAAGCAACTACAA+AGG - Chr7:90136724-90136743 None:intergenic 40.0%
AGAACACAATGTGCTCCTAA+CGG + Chr7:90139777-90139796 MsG0780041371.01.T01:CDS 40.0%
AGAGTGAGAGCTAGACAATT+GGG - Chr7:90138892-90138911 None:intergenic 40.0%
AGGAACCTATACAGATAAGG+GGG - Chr7:90140173-90140192 None:intergenic 40.0%
ATCCTTTACCAATCCATCCA+CGG - Chr7:90139757-90139776 None:intergenic 40.0%
CAAATACTCCTCAACAGACT+TGG - Chr7:90137467-90137486 None:intergenic 40.0%
CACAGGAACCTATACAGATA+AGG - Chr7:90140176-90140195 None:intergenic 40.0%
CACTCATGCCATCATTATTC+TGG - Chr7:90136141-90136160 None:intergenic 40.0%
CAGATTTCATCCACCAAAGA+AGG + Chr7:90138632-90138651 MsG0780041371.01.T01:intron 40.0%
CAGGAACCTATACAGATAAG+GGG - Chr7:90140174-90140193 None:intergenic 40.0%
CATACACTTGAGTTTGACAG+CGG - Chr7:90135925-90135944 None:intergenic 40.0%
CTCATGCCATCATTATTCTG+GGG - Chr7:90136139-90136158 None:intergenic 40.0%
CTGGGAAAAGCAACTACAAA+GGG - Chr7:90136723-90136742 None:intergenic 40.0%
CTTATCTGTATAGGTTCCTG+TGG + Chr7:90140174-90140193 MsG0780041371.01.T01:intron 40.0%
GAAACAAACGGATGCCAAAT+TGG + Chr7:90139321-90139340 MsG0780041371.01.T01:CDS 40.0%
GAGAGAAAATGTTTGAGCCT+TGG - Chr7:90136092-90136111 None:intergenic 40.0%
GAGCTAGACAATTGGGTTTA+TGG - Chr7:90138885-90138904 None:intergenic 40.0%
GATAGGCTCAAAGACAAACA+CGG - Chr7:90138263-90138282 None:intergenic 40.0%
GATGAAATCTGTCATAGGAC+AGG - Chr7:90138623-90138642 None:intergenic 40.0%
GATGGCTGGAATTACAAACT+TGG + Chr7:90137005-90137024 MsG0780041371.01.T01:intron 40.0%
GATTCGTGGATGTTGAGATT+TGG - Chr7:90136166-90136185 None:intergenic 40.0%
GCATACAGGTGTGACATAAA+AGG - Chr7:90140053-90140072 None:intergenic 40.0%
GGTCATGCATAATTGCATAC+AGG - Chr7:90140067-90140086 None:intergenic 40.0%
GTATAGATATTCCAGAGCCA+AGG + Chr7:90136072-90136091 MsG0780041371.01.T01:intron 40.0%
TCATACAAACATACACCCTC+CGG + Chr7:90137896-90137915 MsG0780041371.01.T01:intron 40.0%
TCCTTAACATCTTGTGTGCA+TGG + Chr7:90137196-90137215 MsG0780041371.01.T01:intron 40.0%
TGCTTATATTAGTGACCGGA+GGG - Chr7:90137914-90137933 None:intergenic 40.0%
TTGCTTATATTAGTGACCGG+AGG - Chr7:90137915-90137934 None:intergenic 40.0%
! ACCCTCGGTAGATATTTTGT+TGG + Chr7:90138692-90138711 MsG0780041371.01.T01:intron 40.0%
! AGTAAAGACTTTCCGATTCG+TGG - Chr7:90136180-90136199 None:intergenic 40.0%
! GACATTTCCGATCTGAGATT+GGG - Chr7:90139006-90139025 None:intergenic 40.0%
! TGGTGGATGAAATCTGTCAT+AGG - Chr7:90138628-90138647 None:intergenic 40.0%
!! ACCTGTTTTGAGTGATGCTA+CGG - Chr7:90136606-90136625 None:intergenic 40.0%
!! GCAGTTCTAAACCTAGAGAA+AGG + Chr7:90135852-90135871 MsG0780041371.01.T01:five_prime_UTR 40.0%
!! GGTATCTTGCTGTTCATACT+CGG + Chr7:90139624-90139643 MsG0780041371.01.T01:intron 40.0%
!! TTGTATGAGCCTCTAAGATC+TGG + Chr7:90138958-90138977 MsG0780041371.01.T01:intron 40.0%
!!! AAAGTTTTAGGAGCAGAAGG+AGG - Chr7:90137877-90137896 None:intergenic 40.0%
!!! AAGTTTTAGGAGCAGAAGGA+GGG - Chr7:90137876-90137895 None:intergenic 40.0%
!!! CAGATCCTTAGTTTTAAGGG+AGG - Chr7:90137600-90137619 None:intergenic 40.0%
AAATGTTTGAGCCTTGGCTC+TGG - Chr7:90136086-90136105 None:intergenic 45.0%
AAGTTTCAAAACCCAGCCCT+TGG + Chr7:90137512-90137531 MsG0780041371.01.T01:intron 45.0%
ACCGTAGCATCACTCAAAAC+AGG + Chr7:90136602-90136621 MsG0780041371.01.T01:intron 45.0%
AGTTTCAAAACCCAGCCCTT+GGG + Chr7:90137513-90137532 MsG0780041371.01.T01:intron 45.0%
ATGTCTCCCTGTGAAAAGGA+CGG - Chr7:90136428-90136447 None:intergenic 45.0%
CATCACTCAAAACAGGTTCC+AGG + Chr7:90136609-90136628 MsG0780041371.01.T01:intron 45.0%
CCTGTGGTAGTTGACAATCA+AGG + Chr7:90140190-90140209 MsG0780041371.01.T01:CDS 45.0%
CCTTGATTGTCAACTACCAC+AGG - Chr7:90140193-90140212 None:intergenic 45.0%
CGGTAACACGATAGTACTTC+TGG - Chr7:90136408-90136427 None:intergenic 45.0%
CTAAACCTAGAGAAAGGCGA+AGG + Chr7:90135858-90135877 MsG0780041371.01.T01:five_prime_UTR 45.0%
CTCAGATCGGAAATGTCGAT+CGG + Chr7:90139009-90139028 MsG0780041371.01.T01:intron 45.0%
GAACACAATGTGCTCCTAAC+GGG + Chr7:90139778-90139797 MsG0780041371.01.T01:CDS 45.0%
GAGAGTGAGAGCTAGACAAT+TGG - Chr7:90138893-90138912 None:intergenic 45.0%
GCCATGCACACAAGATGTTA+AGG - Chr7:90137200-90137219 None:intergenic 45.0%
GGAACCTATACAGATAAGGG+GGG - Chr7:90140172-90140191 None:intergenic 45.0%
GGTGAAGTCCAGGAAACAAA+CGG + Chr7:90139309-90139328 MsG0780041371.01.T01:CDS 45.0%
GTACGACCCCAGAATAATGA+TGG + Chr7:90136130-90136149 MsG0780041371.01.T01:intron 45.0%
GTCGTACTCATGATAGAGGT+AGG - Chr7:90136117-90136136 None:intergenic 45.0%
GTTCATCTTTGGTGAAGTCC+AGG + Chr7:90139299-90139318 MsG0780041371.01.T01:CDS 45.0%
TCAACATGCAACCTTCCCAA+GGG - Chr7:90137531-90137550 None:intergenic 45.0%
TTCATCGCCCAATCTCAGAT+CGG + Chr7:90138996-90139015 MsG0780041371.01.T01:intron 45.0%
TTGTCCCCCCTTATCTGTAT+AGG + Chr7:90140165-90140184 MsG0780041371.01.T01:intron 45.0%
TTTGGCATCCGTTTGTTTCC+TGG - Chr7:90139320-90139339 None:intergenic 45.0%
! AACTAAGCCTTGTCCTAGTC+CGG + Chr7:90136503-90136522 MsG0780041371.01.T01:intron 45.0%
! AAGTTAATGGACCTGATGGG+TGG + Chr7:90139956-90139975 MsG0780041371.01.T01:CDS 45.0%
! CCATTTAAGATGCTCCCATG+TGG + Chr7:90138145-90138164 MsG0780041371.01.T01:intron 45.0%
! CGACATTTCCGATCTGAGAT+TGG - Chr7:90139007-90139026 None:intergenic 45.0%
! CTATTAACCGGACTAGGACA+AGG - Chr7:90136513-90136532 None:intergenic 45.0%
! GGTTATGGGTTACTATGACG+TGG - Chr7:90137035-90137054 None:intergenic 45.0%
! GTGTTACCGTCCTTTTCACA+GGG + Chr7:90136419-90136438 MsG0780041371.01.T01:intron 45.0%
! TTTGAAGGGGTTGACTTTGG+AGG + Chr7:90137643-90137662 MsG0780041371.01.T01:intron 45.0%
!! AACCGTGGATGGATTGGTAA+AGG + Chr7:90139752-90139771 MsG0780041371.01.T01:CDS 45.0%
!! ATCTTGCTGTTCATACTCGG+AGG + Chr7:90139627-90139646 MsG0780041371.01.T01:intron 45.0%
!! CCACATGGGAGCATCTTAAA+TGG - Chr7:90138148-90138167 None:intergenic 45.0%
!! GCTTCTGCTGATTCCATCTA+TGG + Chr7:90139081-90139100 MsG0780041371.01.T01:CDS 45.0%
!!! GGTTTTGAAGGGGTTGACTT+TGG + Chr7:90137640-90137659 MsG0780041371.01.T01:intron 45.0%
!! TTAATAAATTATATTAACTA+CGG + Chr7:90138797-90138816 MsG0780041371.01.T01:intron 5.0%
!!! AAAATAAAAATTGTTTTTTT+AGG - Chr7:90138725-90138744 None:intergenic 5.0%
!!! AAATAAAAATTGTTTTTTTA+GGG - Chr7:90138724-90138743 None:intergenic 5.0%
!!! TTATTTATTTTAATTACTAT+CGG + Chr7:90139227-90139246 MsG0780041371.01.T01:intron 5.0%
AGAAATGCTCGCAGTTCGTG+TGG + Chr7:90136310-90136329 MsG0780041371.01.T01:intron 50.0%
ATCGCAGGCGAGTTCATCTT+TGG + Chr7:90139288-90139307 MsG0780041371.01.T01:intron 50.0%
CAGATAAGGGGGGACAAAGA+AGG - Chr7:90140162-90140181 None:intergenic 50.0%
GCTTCAAACCGTGGATGGAT+TGG + Chr7:90139746-90139765 MsG0780041371.01.T01:CDS 50.0%
GTCAACATGCAACCTTCCCA+AGG - Chr7:90137532-90137551 None:intergenic 50.0%
GTTGAGCTTCAAACCGTGGA+TGG + Chr7:90139741-90139760 MsG0780041371.01.T01:CDS 50.0%
TGGGGTCGTACTCATGATAG+AGG - Chr7:90136121-90136140 None:intergenic 50.0%
TTAGGAGCAGAAGGAGGGTA+AGG - Chr7:90137871-90137890 None:intergenic 50.0%
! CGTGTTACCGTCCTTTTCAC+AGG + Chr7:90136418-90136437 MsG0780041371.01.T01:intron 50.0%
! GCTGATTCCATCTATGGCTG+CGG + Chr7:90139087-90139106 MsG0780041371.01.T01:CDS 50.0%
! GTAGGTTGAGCTTCAAACCG+TGG + Chr7:90139737-90139756 MsG0780041371.01.T01:intron 50.0%
! TTGCTGTTCATACTCGGAGG+AGG + Chr7:90139630-90139649 MsG0780041371.01.T01:intron 50.0%
!! TACACTGACTCACTCCTCGT+GGG - Chr7:90138917-90138936 None:intergenic 50.0%
AAAGGCGAAGGCCATCAGGT+TGG + Chr7:90135870-90135889 MsG0780041371.01.T01:five_prime_UTR 55.0%
AAGGCGAAGGCCATCAGGTT+GGG + Chr7:90135871-90135890 MsG0780041371.01.T01:five_prime_UTR 55.0%
AGAGAAAGGCGAAGGCCATC+AGG + Chr7:90135866-90135885 MsG0780041371.01.T01:five_prime_UTR 55.0%
ATGCAACCTTCCCAAGGGCT+GGG - Chr7:90137526-90137545 None:intergenic 55.0%
GAATCCACCGCAGCCATAGA+TGG - Chr7:90139097-90139116 None:intergenic 55.0%
GATGGCCTTCGCCTTTCTCT+AGG - Chr7:90135866-90135885 None:intergenic 55.0%
GATTCCATCTATGGCTGCGG+TGG + Chr7:90139090-90139109 MsG0780041371.01.T01:CDS 55.0%
GTGGTCATGGGATCCTGAGA+AGG + Chr7:90139975-90139994 MsG0780041371.01.T01:CDS 55.0%
TCAAAACCCAGCCCTTGGGA+AGG + Chr7:90137517-90137536 MsG0780041371.01.T01:intron 55.0%
! ATGGACCTGATGGGTGGTCA+TGG + Chr7:90139962-90139981 MsG0780041371.01.T01:CDS 55.0%
! TGGACCTGATGGGTGGTCAT+GGG + Chr7:90139963-90139982 MsG0780041371.01.T01:CDS 55.0%
!! CTACACTGACTCACTCCTCG+TGG - Chr7:90138918-90138937 None:intergenic 55.0%
AGCTCTCACTCTCACCCACG+AGG + Chr7:90138900-90138919 MsG0780041371.01.T01:intron 60.0%
CATGCAACCTTCCCAAGGGC+TGG - Chr7:90137527-90137546 None:intergenic 60.0%
GGATCCCATGACCACCCATC+AGG - Chr7:90139970-90139989 None:intergenic 60.0%
! TGGCTGCGGTGGATTCGTTC+AGG + Chr7:90139101-90139120 MsG0780041371.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 90135821 90140294 90135821 ID=MsG0780041371.01;Name=MsG0780041371.01
Chr7 mRNA 90135821 90140294 90135821 ID=MsG0780041371.01.T01;Parent=MsG0780041371.01;Name=MsG0780041371.01.T01;_AED=0.49;_eAED=0.60;_QI=87|0.8|0.5|1|0.8|0.83|6|0|139
Chr7 exon 90135821 90135900 90135821 ID=MsG0780041371.01.T01:exon:3687;Parent=MsG0780041371.01.T01
Chr7 exon 90139014 90139122 90139014 ID=MsG0780041371.01.T01:exon:3688;Parent=MsG0780041371.01.T01
Chr7 exon 90139295 90139360 90139295 ID=MsG0780041371.01.T01:exon:3689;Parent=MsG0780041371.01.T01
Chr7 exon 90139741 90139827 90139741 ID=MsG0780041371.01.T01:exon:3690;Parent=MsG0780041371.01.T01
Chr7 exon 90139940 90139996 90139940 ID=MsG0780041371.01.T01:exon:3691;Parent=MsG0780041371.01.T01
Chr7 exon 90140187 90140294 90140187 ID=MsG0780041371.01.T01:exon:3692;Parent=MsG0780041371.01.T01
Chr7 five_prime_UTR 90135821 90135900 90135821 ID=MsG0780041371.01.T01:five_prime_utr;Parent=MsG0780041371.01.T01
Chr7 five_prime_UTR 90139014 90139020 90139014 ID=MsG0780041371.01.T01:five_prime_utr;Parent=MsG0780041371.01.T01
Chr7 CDS 90139021 90139122 90139021 ID=MsG0780041371.01.T01:cds;Parent=MsG0780041371.01.T01
Chr7 CDS 90139295 90139360 90139295 ID=MsG0780041371.01.T01:cds;Parent=MsG0780041371.01.T01
Chr7 CDS 90139741 90139827 90139741 ID=MsG0780041371.01.T01:cds;Parent=MsG0780041371.01.T01
Chr7 CDS 90139940 90139996 90139940 ID=MsG0780041371.01.T01:cds;Parent=MsG0780041371.01.T01
Chr7 CDS 90140187 90140294 90140187 ID=MsG0780041371.01.T01:cds;Parent=MsG0780041371.01.T01
Gene Sequence

>MsG0780041371.01.T01

ATGTCGATCGGAGATGCTTTCCTATGTTTACTATTCCTCACAACTTATTCAATTTCAGTTGCTTCTGCTGATTCCATCTATGGCTGCGGTGGATTCGTTCAGGCGAGTTCATCTTTGGTGAAGTCCAGGAAACAAACGGATGCCAAATTGGATTATTCACATGTCACTGTTGAGCTTCAAACCGTGGATGGATTGGTAAAGGATAGAACACAATGTGCTCCTAACGGGTACTATTTTATTCCGGTTTACGACAAGGGATCCTTTGTAATTAAAGTTAATGGACCTGATGGGTGGTCATGGGATCCTGAGAAGGTTCCTGTGGTAGTTGACAATCAAGGTTGCAACAACAATGAAGATATAAATTTTCGTTTCACAGGGTTGGTCATTAATTTGCTATATATTTTTCTTTCTACTTTATGA

Protein sequence

>MsG0780041371.01.T01

MSIGDAFLCLLFLTTYSISVASADSIYGCGGFVQASSSLVKSRKQTDAKLDYSHVTVELQTVDGLVKDRTQCAPNGYYFIPVYDKGSFVIKVNGPDGWSWDPEKVPVVVDNQGCNNNEDINFRFTGLVINLLYIFLSTL*