AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025340.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025340.01.T01 MTR_5g026660 66.337 303 53 5 147 408 91 385 2.00e-112 362
MsG0580025340.01.T01 MTR_5g026660 98.039 51 1 0 30 80 23 73 4.25e-24 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025340.01.T01 AT1G32750 34.053 417 164 12 37 406 30 382 3.04e-39 150
MsG0580025340.01.T01 AT3G19040 28.053 303 155 7 152 406 5 292 5.06e-22 99.8
MsG0580025340.01.T01 AT3G19040 27.778 306 158 7 149 406 8 298 5.70e-22 99.4

Find 85 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGAAATCTTTGGTATTC+AGG 0.160969 5:-17197301 MsG0580025340.01.T01:CDS
AAAGCTTTGCTTCATCAATA+TGG 0.170958 5:+17200937 None:intergenic
GTTGAGAGCTGTGAAATTTC+TGG 0.214776 5:-17196616 MsG0580025340.01.T01:CDS
AACATTTGCAAAACGAATTC+AGG 0.228692 5:+17197201 None:intergenic
TTTGGAAATGTTGATAATTC+TGG 0.293261 5:-17203115 MsG0580025340.01.T01:CDS
CATACACTGACACCATATTT+AGG 0.300170 5:+17201223 None:intergenic
CATGAGGGTATGATCTTTCC+AGG 0.335633 5:+17196728 None:intergenic
ATACACTGGCTTCCTAAATA+TGG 0.338425 5:-17201235 MsG0580025340.01.T01:CDS
ATCTGCATTGGCTGACAAGC+TGG 0.349824 5:-17202167 MsG0580025340.01.T01:CDS
GTCTCTGCAGACTGAAGAAT+TGG 0.360045 5:-17197993 MsG0580025340.01.T01:CDS
CCGAAGCCTCTCTGAAGCTT+TGG 0.361591 5:-17199523 MsG0580025340.01.T01:CDS
AAGCTTTGCTTCATCAATAT+GGG 0.367367 5:+17200938 None:intergenic
GGAAGAAATTGAAGTAAATC+TGG 0.367682 5:-17200882 MsG0580025340.01.T01:CDS
TCTGCAAAATCCTCTTTCAT+TGG 0.380053 5:+17196759 None:intergenic
AAGTCGAACATCTCTCTATC+TGG 0.380425 5:-17199419 MsG0580025340.01.T01:intron
CTGGGAAGATGAAATCCTTT+GGG 0.386291 5:-17196673 MsG0580025340.01.T01:CDS
CCAAAGGACTCTTGTCTTAG+TGG 0.390260 5:-17196786 MsG0580025340.01.T01:CDS
ATCCTCTTGATCAGCGAGAC+TGG 0.398220 5:-17196692 MsG0580025340.01.T01:CDS
ACTGGGAAGATGAAATCCTT+TGG 0.405602 5:-17196674 MsG0580025340.01.T01:CDS
GCGAACGAAGAGGACTATTA+TGG 0.407088 5:-17199568 MsG0580025340.01.T01:CDS
TGTACCGGCACTTTAAGAAT+AGG 0.416587 5:-17203565 MsG0580025340.01.T01:CDS
TTCGTTCGCAGTTCCGTCTC+CGG 0.422627 5:+17199582 None:intergenic
TGATTTAACACCCAAGTGTT+GGG 0.424496 5:-17198194 MsG0580025340.01.T01:CDS
CCACTAAGACAAGAGTCCTT+TGG 0.428126 5:+17196786 None:intergenic
AATTTATAATCTTAGATTGT+GGG 0.446588 5:-17199658 MsG0580025340.01.T01:intron
AGATGATGAAGAAGAATATG+AGG 0.468427 5:-17203173 MsG0580025340.01.T01:CDS
GAAGAAGAATATGAGGAGTC+TGG 0.469008 5:-17203166 MsG0580025340.01.T01:CDS
AAGAATAGGTTTAGTCATGA+AGG 0.477146 5:-17203551 MsG0580025340.01.T01:CDS
CCATCGTCCACGTACAATAC+AGG 0.477969 5:+17197342 None:intergenic
TGATGAAGAGTATGATGGTC+CGG 0.481492 5:-17199601 MsG0580025340.01.T01:CDS
ATGATTTAACACCCAAGTGT+TGG 0.488008 5:-17198195 MsG0580025340.01.T01:CDS
ATAGCGATCCAGTGGTGGAC+TGG 0.492839 5:-17201278 MsG0580025340.01.T01:intron
CCAAAGCTTCAGAGAGGCTT+CGG 0.493471 5:+17199523 None:intergenic
GTTAAGCTTTCTAGTTGTAC+CGG 0.494413 5:-17203580 MsG0580025340.01.T01:CDS
TACTTAAGTCATACCTCTCT+CGG 0.497197 5:+17197161 None:intergenic
CCAGTGGTGGACTGGCTGTA+TGG 0.502201 5:-17201270 MsG0580025340.01.T01:CDS
TTATGATGAAGAATCTGATA+AGG 0.507038 5:-17199469 MsG0580025340.01.T01:CDS
CAGGTAAATGTGCTATCTCT+AGG 0.513176 5:+17197220 None:intergenic
TCCTCTTGATCAGCGAGACT+GGG 0.516353 5:-17196691 MsG0580025340.01.T01:CDS
ACATCTATATCTGTCAATGA+TGG 0.516620 5:+17202142 None:intergenic
AGAATAGGTTTAGTCATGAA+GGG 0.528127 5:-17203550 MsG0580025340.01.T01:intron
CCATACAGCCAGTCCACCAC+TGG 0.529763 5:+17201270 None:intergenic
ATTTATAATCTTAGATTGTG+GGG 0.529769 5:-17199657 MsG0580025340.01.T01:intron
TCTGCATTGGCTGACAAGCT+GGG 0.535863 5:-17202166 MsG0580025340.01.T01:CDS
TAATCTTAGATTGTGGGGAA+AGG 0.542285 5:-17199652 MsG0580025340.01.T01:intron
TTATCATTATCACTTGCAGC+AGG 0.551226 5:+17196642 None:intergenic
CTGATCAAGAGGATAAAAGT+TGG 0.555676 5:+17196701 None:intergenic
TCCCAGTCTCGCTGATCAAG+AGG 0.556874 5:+17196690 None:intergenic
CACTTACTGTGAAAGATGAT+CGG 0.556930 5:-17196812 MsG0580025340.01.T01:intron
GTTACATTGAGCCCAACACT+TGG 0.563316 5:+17198183 None:intergenic
ATTCAGGAACCTCCTCGAAA+GGG 0.564070 5:-17197285 MsG0580025340.01.T01:CDS
GATATTGATGAAGAGTATGA+TGG 0.564320 5:-17199606 MsG0580025340.01.T01:CDS
TAGTGGTGAACCAATGAAAG+AGG 0.565506 5:-17196769 MsG0580025340.01.T01:CDS
ATCTCTAGGTATATACCTCT+AGG 0.567498 5:+17197234 None:intergenic
AAAGGAGCATCTATCTGCAT+TGG 0.568773 5:-17202179 MsG0580025340.01.T01:CDS
TAAACCTATTCTTAAAGTGC+CGG 0.569074 5:+17203561 None:intergenic
CAGCAGGAGAGTTGCCCCAA+AGG 0.569536 5:+17196658 None:intergenic
TCATAGCTCAGAAGCACAGT+TGG 0.569932 5:+17198214 None:intergenic
ACTGGCTGTATGGTGTTCCA+TGG 0.582946 5:-17201260 MsG0580025340.01.T01:CDS
TCTGTTGTATGATGCACCCA+TGG 0.587713 5:-17201189 MsG0580025340.01.T01:intron
GATAAAAGTTGGCTAACATG+AGG 0.589794 5:+17196712 None:intergenic
TCCACGTACAATACAGGCAA+TGG 0.591167 5:+17197348 None:intergenic
ATTGTACGTGGACGATGGAA+AGG 0.592112 5:-17197337 MsG0580025340.01.T01:CDS
TATTCAGGAACCTCCTCGAA+AGG 0.593502 5:-17197286 MsG0580025340.01.T01:CDS
AGAATATGAGGAGTCTGGCA+AGG 0.596017 5:-17203161 MsG0580025340.01.T01:CDS
GGGTAATAGCGATCCAGTGG+TGG 0.597319 5:-17201283 MsG0580025340.01.T01:intron
AGGAAGCCAGTGTATAGCCA+TGG 0.600733 5:+17201243 None:intergenic
TGATGTTGATTATCTTGATG+AGG 0.610907 5:-17203086 MsG0580025340.01.T01:intron
GAATATGAGGAGTCTGGCAA+GGG 0.611272 5:-17203160 MsG0580025340.01.T01:CDS
GGTGTTCCATGGCTATACAC+TGG 0.616878 5:-17201249 MsG0580025340.01.T01:CDS
AGCTTTGCTTCATCAATATG+GGG 0.619000 5:+17200939 None:intergenic
AGAGTATGATGGTCCGGAGA+CGG 0.624548 5:-17199595 MsG0580025340.01.T01:CDS
ATAAAAGTTGGCTAACATGA+GGG 0.625809 5:+17196713 None:intergenic
GAAAGATGATCGGCAACCAA+AGG 0.626465 5:-17196802 MsG0580025340.01.T01:intron
TAGGTATATACCTCTAGGAG+TGG 0.628472 5:+17197239 None:intergenic
AGACGGAACTGCGAACGAAG+AGG 0.638043 5:-17199578 MsG0580025340.01.T01:CDS
ACCATTGCCTGTATTGTACG+TGG 0.647233 5:-17197349 MsG0580025340.01.T01:CDS
TGCGCTCCAAAGCTTCAGAG+AGG 0.656722 5:+17199517 None:intergenic
TTACATTGAGCCCAACACTT+GGG 0.658707 5:+17198184 None:intergenic
CGCTGATGTACAAACACCTG+AGG 0.664586 5:-17197969 MsG0580025340.01.T01:intron
CCTGTATTGTACGTGGACGA+TGG 0.667283 5:-17197342 MsG0580025340.01.T01:CDS
CGTCGGCATTCCACTCCTAG+AGG 0.668755 5:-17197249 MsG0580025340.01.T01:CDS
TGGGAAGATGAAATCCTTTG+GGG 0.671731 5:-17196672 MsG0580025340.01.T01:CDS
AATGGGTAATAGCGATCCAG+TGG 0.678884 5:-17201286 MsG0580025340.01.T01:intron
AGGGAGAAAAGAAAGAGCGT+CGG 0.691591 5:-17197266 MsG0580025340.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGAATTATAATTATTG+TGG - Chr5:17197849-17197868 MsG0580025340.01.T01:intron 10.0%
!! AATAGAATTATAATTATTGT+GGG - Chr5:17197850-17197869 MsG0580025340.01.T01:intron 10.0%
!! ATTTCATGAATAAAAATATT+GGG - Chr5:17202407-17202426 MsG0580025340.01.T01:intron 10.0%
!!! ATTATTATTTTTGTTAAAAC+TGG - Chr5:17198771-17198790 MsG0580025340.01.T01:intron 10.0%
!! AATTTATAATCTTAGATTGT+GGG - Chr5:17200539-17200558 MsG0580025340.01.T01:intron 15.0%
!! ATAAATATTACGAAAATCAT+GGG + Chr5:17199879-17199898 None:intergenic 15.0%
!! ATTAAATTTATTACTTGCAT+TGG - Chr5:17203088-17203107 MsG0580025340.01.T01:CDS 15.0%
!! CAAATTGATCTTTATTAAAT+AGG - Chr5:17197617-17197636 MsG0580025340.01.T01:intron 15.0%
!! CACACAATATATTAAATTTA+GGG + Chr5:17201909-17201928 None:intergenic 15.0%
!! GATTTCATGAATAAAAATAT+TGG - Chr5:17202406-17202425 MsG0580025340.01.T01:intron 15.0%
!! TAATTTATAATCTTAGATTG+TGG - Chr5:17200538-17200557 MsG0580025340.01.T01:intron 15.0%
!! TCACACAATATATTAAATTT+AGG + Chr5:17201910-17201929 None:intergenic 15.0%
!!! ATACAATATTTCTAAAACTA+AGG + Chr5:17198746-17198765 None:intergenic 15.0%
!!! CAAAATAATTTATCTTTTCA+AGG + Chr5:17200427-17200446 None:intergenic 15.0%
!!! TACAATATTTCTAAAACTAA+GGG + Chr5:17198745-17198764 None:intergenic 15.0%
!!! TTATGTTTTGTTTTCAAAAA+GGG - Chr5:17202713-17202732 MsG0580025340.01.T01:intron 15.0%
!!! TTTTGAGATATATTCTTTTT+GGG - Chr5:17197394-17197413 MsG0580025340.01.T01:intron 15.0%
!! AACACCTAATAATAATTTGA+GGG - Chr5:17202034-17202053 MsG0580025340.01.T01:intron 20.0%
!! ACATAAAAAAACTAAGCATT+AGG + Chr5:17202529-17202548 None:intergenic 20.0%
!! ATAGTTATTAATAATAGCGT+AGG - Chr5:17202630-17202649 MsG0580025340.01.T01:intron 20.0%
!! ATATCTCAAAACAGTAAATA+TGG + Chr5:17197385-17197404 None:intergenic 20.0%
!! ATTTATAATCTTAGATTGTG+GGG - Chr5:17200540-17200559 MsG0580025340.01.T01:intron 20.0%
!! CATAAATATTACGAAAATCA+TGG + Chr5:17199880-17199899 None:intergenic 20.0%
!! CTTCAGTATAGTAAATTTAA+GGG - Chr5:17201732-17201751 MsG0580025340.01.T01:intron 20.0%
!! CTTTATGAACTTATAACTTA+AGG - Chr5:17200843-17200862 MsG0580025340.01.T01:intron 20.0%
!! TAAATTTACTATACTGAAGA+TGG + Chr5:17201731-17201750 None:intergenic 20.0%
!! TAACACCTAATAATAATTTG+AGG - Chr5:17202033-17202052 MsG0580025340.01.T01:intron 20.0%
!! TAATTGAAAATCAGCAAAAT+TGG - Chr5:17199605-17199624 MsG0580025340.01.T01:CDS 20.0%
!! TAGTTATTAATAATAGCGTA+GGG - Chr5:17202631-17202650 MsG0580025340.01.T01:intron 20.0%
!! TCTTAATTAATGAAACAAAC+AGG - Chr5:17202791-17202810 MsG0580025340.01.T01:intron 20.0%
!! TCTTCAGTATAGTAAATTTA+AGG - Chr5:17201731-17201750 MsG0580025340.01.T01:intron 20.0%
!! TTAAAAGTAGTTCAAAGTAT+AGG + Chr5:17197733-17197752 None:intergenic 20.0%
!! TTTGAATGATATTTCTCTTA+GGG + Chr5:17201441-17201460 None:intergenic 20.0%
!!! AAAAAGTTGTTTTTGTTATC+TGG - Chr5:17200903-17200922 MsG0580025340.01.T01:CDS 20.0%
!!! AGCTTTTTGAAAAACAAAAA+AGG - Chr5:17197453-17197472 MsG0580025340.01.T01:intron 20.0%
!!! GAAATCTTTTGATATTTTAG+AGG - Chr5:17199294-17199313 MsG0580025340.01.T01:intron 20.0%
!!! GTTATGTTTTGTTTTCAAAA+AGG - Chr5:17202712-17202731 MsG0580025340.01.T01:intron 20.0%
!!! GTTTTGAGATATATTCTTTT+TGG - Chr5:17197393-17197412 MsG0580025340.01.T01:intron 20.0%
!!! TAATGCTTAGTTTTTTTATG+TGG - Chr5:17202528-17202547 MsG0580025340.01.T01:intron 20.0%
!!! TGTGTTCTAAAGAATTTTTT+GGG - Chr5:17198692-17198711 MsG0580025340.01.T01:intron 20.0%
!!! TTAAATAGGTTTAAGACTTT+AGG - Chr5:17197631-17197650 MsG0580025340.01.T01:intron 20.0%
!!! TTTATTTAGCTTCGTTTTTT+TGG - Chr5:17196956-17196975 MsG0580025340.01.T01:intron 20.0%
!!! TTTTACAGAAACAGTAAAAA+TGG + Chr5:17197355-17197374 None:intergenic 20.0%
!!! TTTTCAAAAAGCTACAATAA+AGG + Chr5:17197446-17197465 None:intergenic 20.0%
!!! TTTTGCTTAGAATTAATTCT+GGG - Chr5:17199778-17199797 MsG0580025340.01.T01:intron 20.0%
!!! TTTTTGAAAAACAAAAAAGG+AGG - Chr5:17197456-17197475 MsG0580025340.01.T01:intron 20.0%
!!! TTTTTGCTTAGAATTAATTC+TGG - Chr5:17199777-17199796 MsG0580025340.01.T01:intron 20.0%
! AAAATGCTTTCATGCAATAT+CGG + Chr5:17200983-17201002 None:intergenic 25.0%
! AAATTGCTTATATTCAAGAC+TGG + Chr5:17200066-17200085 None:intergenic 25.0%
! AAATTTGTATGTGAAGTTTG+TGG - Chr5:17201646-17201665 MsG0580025340.01.T01:intron 25.0%
! AATAAAATTGCTTCATGGTT+TGG - Chr5:17199822-17199841 MsG0580025340.01.T01:intron 25.0%
! AATTAATGAAACAAACAGGA+AGG - Chr5:17202795-17202814 MsG0580025340.01.T01:intron 25.0%
! AATTTGTATGTGAAGTTTGT+GGG - Chr5:17201647-17201666 MsG0580025340.01.T01:intron 25.0%
! ACAAATTTGAATTCAGCATA+TGG + Chr5:17201634-17201653 None:intergenic 25.0%
! ACTCAGTATGTTCAATAATT+TGG - Chr5:17196995-17197014 MsG0580025340.01.T01:intron 25.0%
! AGTAATAATGAAGAGTAACT+TGG + Chr5:17200139-17200158 None:intergenic 25.0%
! ATATAAATTCAAGAGTCGTA+TGG + Chr5:17199907-17199926 None:intergenic 25.0%
! ATTTAGTCAAAATCATGAGT+TGG - Chr5:17199520-17199539 MsG0580025340.01.T01:CDS 25.0%
! CATATCAAGATATCATTATC+AGG - Chr5:17198121-17198140 MsG0580025340.01.T01:intron 25.0%
! CTTTGAATGATATTTCTCTT+AGG + Chr5:17201442-17201461 None:intergenic 25.0%
! GTAATAATGAAGAGTAACTT+GGG + Chr5:17200138-17200157 None:intergenic 25.0%
! TACAATAGCTTAGAAATTTC+AGG + Chr5:17197264-17197283 None:intergenic 25.0%
! TATAAATTCAAGAGTCGTAT+GGG + Chr5:17199906-17199925 None:intergenic 25.0%
! TATTGTAGTATCATCATGAT+TGG - Chr5:17197277-17197296 MsG0580025340.01.T01:CDS 25.0%
! TCAACCCTCAAATTATTATT+AGG + Chr5:17202041-17202060 None:intergenic 25.0%
! TCTGCTATATTCTATTATGT+AGG + Chr5:17200333-17200352 None:intergenic 25.0%
! TGTTATATGATCATATACCA+TGG + Chr5:17196735-17196754 None:intergenic 25.0%
! TTATGATGAAGAATCTGATA+AGG - Chr5:17200728-17200747 MsG0580025340.01.T01:intron 25.0%
! TTGGTCAAAAACAGTAAAAT+TGG - Chr5:17197964-17197983 MsG0580025340.01.T01:intron 25.0%
!! AAACCATGAAGCAATTTTAT+TGG + Chr5:17199823-17199842 None:intergenic 25.0%
!! AAATGAGCATTTTTCCTTTT+AGG - Chr5:17197991-17198010 MsG0580025340.01.T01:CDS 25.0%
!! AACCATGAAGCAATTTTATT+GGG + Chr5:17199822-17199841 None:intergenic 25.0%
!! CTTATTTGCTACAATTGTTA+AGG - Chr5:17197573-17197592 MsG0580025340.01.T01:intron 25.0%
!! CTTCATTTGTTTATGTGTTT+TGG - Chr5:17197945-17197964 MsG0580025340.01.T01:intron 25.0%
!! GAATAAGATTTGAGAACTTT+TGG - Chr5:17198714-17198733 MsG0580025340.01.T01:intron 25.0%
!!! AAACTAGTTGCCTTTTAAAA+AGG - Chr5:17199066-17199085 MsG0580025340.01.T01:intron 25.0%
!!! AACTACTTTTAATGATCTGT+TGG - Chr5:17197741-17197760 MsG0580025340.01.T01:intron 25.0%
!!! AATGTGTTTTTTATTTGGCT+TGG - Chr5:17200802-17200821 MsG0580025340.01.T01:intron 25.0%
!!! CATTTTTTAAGGACTTCATA+TGG - Chr5:17201779-17201798 MsG0580025340.01.T01:intron 25.0%
!!! CTGGTAATGTGTTTTTTATT+TGG - Chr5:17200797-17200816 MsG0580025340.01.T01:intron 25.0%
!!! CTTCATATGGTATGTTTTTA+TGG - Chr5:17201792-17201811 MsG0580025340.01.T01:intron 25.0%
!!! GTGTGTTCTAAAGAATTTTT+TGG - Chr5:17198691-17198710 MsG0580025340.01.T01:intron 25.0%
!!! TTTGGAAATGTTGATAATTC+TGG - Chr5:17197082-17197101 MsG0580025340.01.T01:intron 25.0%
!!! TTTTCTGGTAGTTTATAACT+CGG - Chr5:17200513-17200532 MsG0580025340.01.T01:intron 25.0%
AAAGCTTTGCTTCATCAATA+TGG + Chr5:17199263-17199282 None:intergenic 30.0%
AACATTTGCAAAACGAATTC+AGG + Chr5:17202999-17203018 None:intergenic 30.0%
AAGAATAGGTTTAGTCATGA+AGG - Chr5:17196646-17196665 MsG0580025340.01.T01:CDS 30.0%
AAGAATTTGAAAGAATGCCA+TGG - Chr5:17196715-17196734 MsG0580025340.01.T01:CDS 30.0%
AAGCTTTGCTTCATCAATAT+GGG + Chr5:17199262-17199281 None:intergenic 30.0%
AATATATTCCCCCATAGTAT+TGG - Chr5:17198520-17198539 MsG0580025340.01.T01:intron 30.0%
AATTACCTGAGATTCAACTT+TGG - Chr5:17197521-17197540 MsG0580025340.01.T01:intron 30.0%
ACATCTATATCTGTCAATGA+TGG + Chr5:17198058-17198077 None:intergenic 30.0%
AGAATAGGTTTAGTCATGAA+GGG - Chr5:17196647-17196666 MsG0580025340.01.T01:CDS 30.0%
AGATGATGAAGAAGAATATG+AGG - Chr5:17197024-17197043 MsG0580025340.01.T01:intron 30.0%
AGCCTAATGAAGAATTTAAG+GGG + Chr5:17199238-17199257 None:intergenic 30.0%
AGCTGTTTACATGAATGAAT+GGG - Chr5:17198894-17198913 MsG0580025340.01.T01:intron 30.0%
AGTACACTTACTACATCAAT+TGG - Chr5:17198618-17198637 MsG0580025340.01.T01:intron 30.0%
ATAAAAGTTGGCTAACATGA+GGG + Chr5:17203487-17203506 None:intergenic 30.0%
ATAGACCTCTTCAAAAATTC+AGG + Chr5:17202822-17202841 None:intergenic 30.0%
ATGTTTATTGTGCTGCATTA+GGG - Chr5:17202313-17202332 MsG0580025340.01.T01:intron 30.0%
ATTCAACATATGATCGAGAA+TGG + Chr5:17200023-17200042 None:intergenic 30.0%
CAAAATGCTATCTTCTGATT+TGG - Chr5:17198166-17198185 MsG0580025340.01.T01:intron 30.0%
CAGCACAATAAACATCAAAA+AGG + Chr5:17202308-17202327 None:intergenic 30.0%
CAGGATCAATTATTCTTTGT+AGG - Chr5:17197770-17197789 MsG0580025340.01.T01:intron 30.0%
CTACAAAGAATAATTGATCC+TGG + Chr5:17197772-17197791 None:intergenic 30.0%
CTGAGAAATAAAATCACCAT+GGG + Chr5:17199027-17199046 None:intergenic 30.0%
GAAAGAACATAAAACCACTT+AGG + Chr5:17202278-17202297 None:intergenic 30.0%
GAAGTTATGTAACTGCTAAT+TGG + Chr5:17199414-17199433 None:intergenic 30.0%
GAGCCTAATGAAGAATTTAA+GGG + Chr5:17199239-17199258 None:intergenic 30.0%
GGAAGAAATTGAAGTAAATC+TGG - Chr5:17199315-17199334 MsG0580025340.01.T01:intron 30.0%
GGGGAATATATTAGACATTT+AGG + Chr5:17198512-17198531 None:intergenic 30.0%
GGTATTTAATTCTAGCCATT+CGG - Chr5:17201336-17201355 MsG0580025340.01.T01:intron 30.0%
TAAACCTATTCTTAAAGTGC+CGG + Chr5:17196639-17196658 None:intergenic 30.0%
TAGAACACACTCTTTATGAT+TGG + Chr5:17198681-17198700 None:intergenic 30.0%
TAGCTGTTTACATGAATGAA+TGG - Chr5:17198893-17198912 MsG0580025340.01.T01:intron 30.0%
TATTGTAGAAGAAGATGAAG+AGG - Chr5:17203237-17203256 MsG0580025340.01.T01:intron 30.0%
TCCAAATTTGGATTTCTTCA+TGG - Chr5:17203354-17203373 MsG0580025340.01.T01:intron 30.0%
TCCATGAAGAAATCCAAATT+TGG + Chr5:17203358-17203377 None:intergenic 30.0%
TCCTAAAAGAACAATTATCC+TGG + Chr5:17197810-17197829 None:intergenic 30.0%
TCTTATCAAGGAAATTGAAG+AGG + Chr5:17198238-17198257 None:intergenic 30.0%
TGACTTCGAATTTCCAAATT+TGG - Chr5:17203342-17203361 MsG0580025340.01.T01:intron 30.0%
TTATGTAACTGCTAATTGGT+TGG + Chr5:17199410-17199429 None:intergenic 30.0%
TTATTCTTTGTAGGATCTGT+TGG - Chr5:17197779-17197798 MsG0580025340.01.T01:intron 30.0%
TTCCAGATTATATTTGAGCA+AGG + Chr5:17200948-17200967 None:intergenic 30.0%
TTCCAGTAGAAATAAAACAC+AGG + Chr5:17198409-17198428 None:intergenic 30.0%
TTCTTTAGTAGTCTTCTTGT+TGG - Chr5:17201529-17201548 MsG0580025340.01.T01:intron 30.0%
TTGCTTCACATGTTATTACT+TGG - Chr5:17199682-17199701 MsG0580025340.01.T01:intron 30.0%
TTTGCTTCATGTCTATTATG+TGG - Chr5:17200478-17200497 MsG0580025340.01.T01:intron 30.0%
! ACCATGAAGCAATTTTATTG+GGG + Chr5:17199821-17199840 None:intergenic 30.0%
! AGCGAGTTTATGAATTTTGT+AGG - Chr5:17199952-17199971 MsG0580025340.01.T01:intron 30.0%
! ATCTTGTTGTACACAAACAA+AGG + Chr5:17197699-17197718 None:intergenic 30.0%
! ATGATTTTTGTAACACACTG+AGG - Chr5:17201238-17201257 MsG0580025340.01.T01:CDS 30.0%
! ATTAAATTTAGGGTCTTGCT+AGG + Chr5:17201899-17201918 None:intergenic 30.0%
! GCATTTAAAATCCACAAAAC+AGG + Chr5:17199137-17199156 None:intergenic 30.0%
! TAACTGAACCTAACTCTTTT+CGG - Chr5:17200258-17200277 MsG0580025340.01.T01:intron 30.0%
! TAAGATTTGAGAACTTTTGG+CGG - Chr5:17198717-17198736 MsG0580025340.01.T01:intron 30.0%
! TACTTTTAATGATCTGTTGG+AGG - Chr5:17197744-17197763 MsG0580025340.01.T01:intron 30.0%
! TAGAAAATGCTGATTGAAAG+TGG - Chr5:17201315-17201334 MsG0580025340.01.T01:intron 30.0%
! TAGTCATGAAGGGTAAATTT+TGG - Chr5:17196657-17196676 MsG0580025340.01.T01:CDS 30.0%
! TATTGACTGAATCACAAACA+GGG + Chr5:17199094-17199113 None:intergenic 30.0%
! TCCAGGATAATTGTTCTTTT+AGG - Chr5:17197806-17197825 MsG0580025340.01.T01:intron 30.0%
! TCTGTTTAGTTAGCTTAAGT+TGG - Chr5:17199845-17199864 MsG0580025340.01.T01:intron 30.0%
! TGATGTTGATTATCTTGATG+AGG - Chr5:17197111-17197130 MsG0580025340.01.T01:intron 30.0%
! TGATTTTTGTAACACACTGA+GGG - Chr5:17201239-17201258 MsG0580025340.01.T01:CDS 30.0%
! TGCAGTTTTTGATATTCTGT+TGG - Chr5:17198348-17198367 MsG0580025340.01.T01:intron 30.0%
! TGTTTTCTGATACATCAGTA+CGG + Chr5:17203318-17203337 None:intergenic 30.0%
! TTTAAAATCCACAAAACAGG+AGG + Chr5:17199134-17199153 None:intergenic 30.0%
!! TACTTGGCGCATTTTTATTT+TGG - Chr5:17199698-17199717 MsG0580025340.01.T01:intron 30.0%
!! TGAATTTTTGAAGAGGTCTA+TGG - Chr5:17202821-17202840 MsG0580025340.01.T01:intron 30.0%
!! TGAGATATATTCTTTTTGGG+AGG - Chr5:17197397-17197416 MsG0580025340.01.T01:intron 30.0%
!! TTCTGAAATCTTTGGTATTC+AGG - Chr5:17202896-17202915 MsG0580025340.01.T01:intron 30.0%
!!! AATGTTTTGAGAACCAAGAT+CGG - Chr5:17197178-17197197 MsG0580025340.01.T01:CDS 30.0%
!!! ACTTGGCGCATTTTTATTTT+GGG - Chr5:17199699-17199718 MsG0580025340.01.T01:intron 30.0%
!!! CATTTTTATTTTGGGGTTTC+TGG - Chr5:17199707-17199726 MsG0580025340.01.T01:intron 30.0%
!!! GAAGCATCTATTTTTAGGAA+AGG - Chr5:17202059-17202078 MsG0580025340.01.T01:intron 30.0%
!!! TGTTAGCTTTTCTTTTTCAG+TGG - Chr5:17202118-17202137 MsG0580025340.01.T01:intron 30.0%
!!! TTACGCTTTTCTGAAATCTT+TGG - Chr5:17202888-17202907 MsG0580025340.01.T01:intron 30.0%
!!! TTTTTCCTTTTAGGATGCAA+AGG - Chr5:17198000-17198019 MsG0580025340.01.T01:CDS 30.0%
!!! TTTTTTTTCCTCCTGTTTTG+TGG - Chr5:17199123-17199142 MsG0580025340.01.T01:intron 30.0%
AAACAAAAAAGGAGGCAGTT+TGG - Chr5:17197464-17197483 MsG0580025340.01.T01:intron 35.0%
AACAGAGCACATTCTTATCA+AGG + Chr5:17198250-17198269 None:intergenic 35.0%
AAGTTGTGCATTCAATGCAT+CGG - Chr5:17201816-17201835 MsG0580025340.01.T01:intron 35.0%
ACATAAAACCACTTAGGAGA+CGG + Chr5:17202272-17202291 None:intergenic 35.0%
ACATAACCAAGACCAAATAG+AGG + Chr5:17202699-17202718 None:intergenic 35.0%
ACCAAGTCAATCCTACTTTA+GGG + Chr5:17196866-17196885 None:intergenic 35.0%
ACTCTTGAATTTATATGCGC+GGG - Chr5:17199911-17199930 MsG0580025340.01.T01:intron 35.0%
AGCCTTGCTCAAATATAATC+TGG - Chr5:17200943-17200962 MsG0580025340.01.T01:CDS 35.0%
AGCTTTGCTTCATCAATATG+GGG + Chr5:17199261-17199280 None:intergenic 35.0%
AGGACTATTATGGCCAAAAA+AGG - Chr5:17200639-17200658 MsG0580025340.01.T01:intron 35.0%
ATCATCTTTCACAGTAAGTG+AGG + Chr5:17203385-17203404 None:intergenic 35.0%
ATCTATCCACCAATACTATG+GGG + Chr5:17198532-17198551 None:intergenic 35.0%
ATCTCATAAGCTAGTTACAG+AGG - Chr5:17199468-17199487 MsG0580025340.01.T01:CDS 35.0%
ATCTCTAGGTATATACCTCT+AGG + Chr5:17202966-17202985 None:intergenic 35.0%
ATCTCTCTTTCCTTCTCTAA+GGG - Chr5:17201050-17201069 MsG0580025340.01.T01:intron 35.0%
ATCTTCCAAAGTTGAATCTC+AGG + Chr5:17197529-17197548 None:intergenic 35.0%
ATGATTTAACACCCAAGTGT+TGG - Chr5:17202002-17202021 MsG0580025340.01.T01:intron 35.0%
ATTTAATTCTAGCCATTCGG+TGG - Chr5:17201339-17201358 MsG0580025340.01.T01:intron 35.0%
ATTTCAGGAAACTACTGAGA+AGG + Chr5:17197249-17197268 None:intergenic 35.0%
ATTTCTCTTAGGGAAGAAAG+CGG + Chr5:17201431-17201450 None:intergenic 35.0%
CAAGTGAAAAAACAGCCATT+AGG + Chr5:17203178-17203197 None:intergenic 35.0%
CAAGTTCACAGAAACATCAA+AGG + Chr5:17197150-17197169 None:intergenic 35.0%
CAATATGGTTTCTGTCCTAA+TGG - Chr5:17203160-17203179 MsG0580025340.01.T01:CDS 35.0%
CACTTACTGTGAAAGATGAT+CGG - Chr5:17203385-17203404 MsG0580025340.01.T01:intron 35.0%
CATACACTGACACCATATTT+AGG + Chr5:17198977-17198996 None:intergenic 35.0%
CATCTATCCACCAATACTAT+GGG + Chr5:17198533-17198552 None:intergenic 35.0%
CCTGAGAAATAAAATCACCA+TGG + Chr5:17199028-17199047 None:intergenic 35.0%
CTACAATTGTTAAGGTCAAG+TGG - Chr5:17197581-17197600 MsG0580025340.01.T01:intron 35.0%
CTGATCAAGAGGATAAAAGT+TGG + Chr5:17203499-17203518 None:intergenic 35.0%
CTGTTTGTGATTCAGTCAAT+AGG - Chr5:17199093-17199112 MsG0580025340.01.T01:intron 35.0%
GACTCTTGAATTTATATGCG+CGG - Chr5:17199910-17199929 MsG0580025340.01.T01:intron 35.0%
GAGAATTTGGAGGTCATATA+CGG + Chr5:17202444-17202463 None:intergenic 35.0%
GAGTCTAACACTTAACAAAC+AGG - Chr5:17203282-17203301 MsG0580025340.01.T01:intron 35.0%
GATAAAAGTTGGCTAACATG+AGG + Chr5:17203488-17203507 None:intergenic 35.0%
GATGTTTATTGTGCTGCATT+AGG - Chr5:17202312-17202331 MsG0580025340.01.T01:intron 35.0%
GCAAGCAAATTTGAAAGAGT+GGG - Chr5:17199155-17199174 MsG0580025340.01.T01:intron 35.0%
GGAGCCTAATGAAGAATTTA+AGG + Chr5:17199240-17199259 None:intergenic 35.0%
GGTATAGATTTACATGTGTC+TGG - Chr5:17200864-17200883 MsG0580025340.01.T01:intron 35.0%
GGTGTGATTGTTTAATCAGT+AGG - Chr5:17201128-17201147 MsG0580025340.01.T01:intron 35.0%
GTATCATCATGATTGGTATG+CGG - Chr5:17197284-17197303 MsG0580025340.01.T01:CDS 35.0%
GTGGAGACAATGAAAATACA+AGG + Chr5:17198216-17198235 None:intergenic 35.0%
TAATCTTAGATTGTGGGGAA+AGG - Chr5:17200545-17200564 MsG0580025340.01.T01:intron 35.0%
TACATCATGGAATCGTAACA+CGG + Chr5:17199988-17200007 None:intergenic 35.0%
TACGTATTCGCTAGAGAATT+TGG + Chr5:17202457-17202476 None:intergenic 35.0%
TACTTAAGTCATACCTCTCT+CGG + Chr5:17203039-17203058 None:intergenic 35.0%
TATCAAGGAAATTGAAGAGG+TGG + Chr5:17198235-17198254 None:intergenic 35.0%
TATGAAACAAGTTCTCACGA+CGG - Chr5:17200194-17200213 MsG0580025340.01.T01:intron 35.0%
TCATCTATCCACCAATACTA+TGG + Chr5:17198534-17198553 None:intergenic 35.0%
TCGAAAGACTTGTATCTATC+TGG + Chr5:17203206-17203225 None:intergenic 35.0%
TCGCTATATCATATCTGTGT+GGG + Chr5:17199937-17199956 None:intergenic 35.0%
TCTGCAAAATCCTCTTTCAT+TGG + Chr5:17203441-17203460 None:intergenic 35.0%
TGAAAATCAGCAAAATTGGC+CGG - Chr5:17199609-17199628 MsG0580025340.01.T01:CDS 35.0%
TGATAACCTCTATTTGGTCT+TGG - Chr5:17202690-17202709 MsG0580025340.01.T01:intron 35.0%
TGATTTAACACCCAAGTGTT+GGG - Chr5:17202003-17202022 MsG0580025340.01.T01:intron 35.0%
TGCAAGCAAATTTGAAAGAG+TGG - Chr5:17199154-17199173 MsG0580025340.01.T01:intron 35.0%
TGCCCCTTAAATTCTTCATT+AGG - Chr5:17199233-17199252 MsG0580025340.01.T01:intron 35.0%
TGCTTATATTCAAGACTGGA+GGG + Chr5:17200062-17200081 None:intergenic 35.0%
TGTCTGTTGACATCTTTCAT+TGG - Chr5:17201104-17201123 MsG0580025340.01.T01:intron 35.0%
TTATCATTATCACTTGCAGC+AGG + Chr5:17203558-17203577 None:intergenic 35.0%
TTCAATTATGCATCCGAACA+GGG + Chr5:17199593-17199612 None:intergenic 35.0%
TTGCTTATATTCAAGACTGG+AGG + Chr5:17200063-17200082 None:intergenic 35.0%
TTTCAATTATGCATCCGAAC+AGG + Chr5:17199594-17199613 None:intergenic 35.0%
TTTGCGCTTATATATGAGAC+CGG - Chr5:17200299-17200318 MsG0580025340.01.T01:intron 35.0%
TTTGTAGACGCATCTAAGAA+GGG - Chr5:17202155-17202174 MsG0580025340.01.T01:CDS 35.0%
TTTGTGATTCAGTCAATAGG+AGG - Chr5:17199096-17199115 MsG0580025340.01.T01:intron 35.0%
! AGCGTTTGATAACCTCTATT+TGG - Chr5:17202684-17202703 MsG0580025340.01.T01:intron 35.0%
! CATGAAGGGTAAATTTTGGA+GGG - Chr5:17196661-17196680 MsG0580025340.01.T01:CDS 35.0%
! CTATTGACTGAATCACAAAC+AGG + Chr5:17199095-17199114 None:intergenic 35.0%
! CTGCATGATATAGTTTTTCC+TGG + Chr5:17198333-17198352 None:intergenic 35.0%
! TCATGAAGGGTAAATTTTGG+AGG - Chr5:17196660-17196679 MsG0580025340.01.T01:CDS 35.0%
! TGGTTTCATGTGAAGTTTTC+TGG - Chr5:17200498-17200517 MsG0580025340.01.T01:intron 35.0%
! TTTGTTTGGGAGAGAGATTT+TGG + Chr5:17196843-17196862 None:intergenic 35.0%
!! AAACAGGGTGCCTTTTTAAA+AGG + Chr5:17199079-17199098 None:intergenic 35.0%
!! AAGGACCTGAATTTTTGAAG+AGG - Chr5:17202814-17202833 MsG0580025340.01.T01:intron 35.0%
!! ATACACTGGCTTCCTAAATA+TGG - Chr5:17198962-17198981 MsG0580025340.01.T01:intron 35.0%
!! ATCCTACTTTAGGGTTTGTT+TGG + Chr5:17196857-17196876 None:intergenic 35.0%
!! ATGTGATTTGTTCACTGTCA+TGG + Chr5:17202340-17202359 None:intergenic 35.0%
!! CCATGGTGATTTTATTTCTC+AGG - Chr5:17199025-17199044 MsG0580025340.01.T01:intron 35.0%
!! CGTAATTTGTTTGCGAGAAT+AGG + Chr5:17199745-17199764 None:intergenic 35.0%
!! GATATATTCTTTTTGGGAGG+AGG - Chr5:17197400-17197419 MsG0580025340.01.T01:intron 35.0%
!! GGGTTGAAGCATCTATTTTT+AGG - Chr5:17202054-17202073 MsG0580025340.01.T01:intron 35.0%
!! GTTAAGCTTTCTAGTTGTAC+CGG - Chr5:17196617-17196636 MsG0580025340.01.T01:CDS 35.0%
!! TAGTATTGGTGGATAGATGA+AGG - Chr5:17198534-17198553 MsG0580025340.01.T01:intron 35.0%
!! TCCTACTTTAGGGTTTGTTT+GGG + Chr5:17196856-17196875 None:intergenic 35.0%
!! TGGTGATTTTATTTCTCAGG+TGG - Chr5:17199028-17199047 MsG0580025340.01.T01:intron 35.0%
!! TTAGTGCTCTCAGTTGATAA+AGG + Chr5:17198385-17198404 None:intergenic 35.0%
!!! AGCCTGTGTTTTATTTCTAC+TGG - Chr5:17198404-17198423 MsG0580025340.01.T01:intron 35.0%
!!! ATGTTTTGAGAACCAAGATC+GGG - Chr5:17197179-17197198 MsG0580025340.01.T01:CDS 35.0%
!!! CTGAAGTGTAGTTTTAGTGA+TGG - Chr5:17198866-17198885 MsG0580025340.01.T01:intron 35.0%
!!! CTTGGCGCATTTTTATTTTG+GGG - Chr5:17199700-17199719 MsG0580025340.01.T01:intron 35.0%
!!! CTTTTCTTTTTCAGTGGATC+AGG - Chr5:17202124-17202143 MsG0580025340.01.T01:intron 35.0%
!!! GCAGCGAAAAAATCCTTTTT+TGG + Chr5:17200655-17200674 None:intergenic 35.0%
!!! GGTCTGCTAGTGATTTTTTT+GGG - Chr5:17199176-17199195 MsG0580025340.01.T01:intron 35.0%
AAACAGCAAAAACTGACCTC+AGG + Chr5:17202247-17202266 None:intergenic 40.0%
AAAGGCAGTGAATTTCACAC+GGG - Chr5:17202077-17202096 MsG0580025340.01.T01:intron 40.0%
AACCATATTGTAATGCACCG+CGG + Chr5:17203150-17203169 None:intergenic 40.0%
AAGTCGAACATCTCTCTATC+TGG - Chr5:17200778-17200797 MsG0580025340.01.T01:intron 40.0%
AATTAAACGATCCCACTCGT+TGG - Chr5:17201405-17201424 MsG0580025340.01.T01:intron 40.0%
AATTTGGAGGTCATATACGG+TGG + Chr5:17202441-17202460 None:intergenic 40.0%
ACCCTAAAGTAGGATTGACT+TGG - Chr5:17196862-17196881 MsG0580025340.01.T01:intron 40.0%
ACTGGGAAGATGAAATCCTT+TGG - Chr5:17203523-17203542 MsG0580025340.01.T01:intron 40.0%
AGTCCTTAAAAAATGCCCGT+AGG + Chr5:17201774-17201793 None:intergenic 40.0%
AGTGCACAACTAAGCTAGTT+AGG - Chr5:17199380-17199399 MsG0580025340.01.T01:intron 40.0%
ATCTACCACAATGTTGCATC+AGG + Chr5:17201384-17201403 None:intergenic 40.0%
ATGAAACAAGTTCTCACGAC+GGG - Chr5:17200195-17200214 MsG0580025340.01.T01:intron 40.0%
ATGCTCCTTTGCATCCTAAA+AGG + Chr5:17198008-17198027 None:intergenic 40.0%
CACCAAGTCAATCCTACTTT+AGG + Chr5:17196867-17196886 None:intergenic 40.0%
CAGGTAAATGTGCTATCTCT+AGG + Chr5:17202980-17202999 None:intergenic 40.0%
CTCGCTATATCATATCTGTG+TGG + Chr5:17199938-17199957 None:intergenic 40.0%
CTGATGATAGGGGTTTGTAA+GGG - Chr5:17198803-17198822 MsG0580025340.01.T01:intron 40.0%
CTGGGAAGATGAAATCCTTT+GGG - Chr5:17203524-17203543 MsG0580025340.01.T01:intron 40.0%
CTGTTGACATCTTTCATTGG+TGG - Chr5:17201107-17201126 MsG0580025340.01.T01:intron 40.0%
CTTTGTAGACGCATCTAAGA+AGG - Chr5:17202154-17202173 MsG0580025340.01.T01:CDS 40.0%
GAAAATCAGCAAAATTGGCC+GGG - Chr5:17199610-17199629 MsG0580025340.01.T01:CDS 40.0%
GAAAGGCAGTGAATTTCACA+CGG - Chr5:17202076-17202095 MsG0580025340.01.T01:intron 40.0%
GAAGAAGAATATGAGGAGTC+TGG - Chr5:17197031-17197050 MsG0580025340.01.T01:intron 40.0%
GATCTCTCTTTCCTTCTCTA+AGG - Chr5:17201049-17201068 MsG0580025340.01.T01:intron 40.0%
GCCCCAATAAAATTGCTTCA+TGG - Chr5:17199817-17199836 MsG0580025340.01.T01:intron 40.0%
GTATTCGCTAGAGAATTTGG+AGG + Chr5:17202454-17202473 None:intergenic 40.0%
GTGCACAACTAAGCTAGTTA+GGG - Chr5:17199381-17199400 MsG0580025340.01.T01:intron 40.0%
GTTGAGAGCTGTGAAATTTC+TGG - Chr5:17203581-17203600 MsG0580025340.01.T01:CDS 40.0%
TACTCAAATTCAAGCTGCAC+AGG + Chr5:17201961-17201980 None:intergenic 40.0%
TAGTGGTGAACCAATGAAAG+AGG - Chr5:17203428-17203447 MsG0580025340.01.T01:intron 40.0%
TATTATGTAGGCACTCTCTC+CGG + Chr5:17200321-17200340 None:intergenic 40.0%
TCCCAAACAAACCCTAAAGT+AGG - Chr5:17196852-17196871 MsG0580025340.01.T01:intron 40.0%
TCTATCCACCAATACTATGG+GGG + Chr5:17198531-17198550 None:intergenic 40.0%
TGGGAAGATGAAATCCTTTG+GGG - Chr5:17203525-17203544 MsG0580025340.01.T01:intron 40.0%
TTAAGGGAAATGCTAACGAG+TGG - Chr5:17201748-17201767 MsG0580025340.01.T01:intron 40.0%
TTACATTGAGCCCAACACTT+GGG + Chr5:17202016-17202035 None:intergenic 40.0%
TTCTTTGTAGGATCTGTTGG+AGG - Chr5:17197782-17197801 MsG0580025340.01.T01:intron 40.0%
TTTGACCTGATGCAACATTG+TGG - Chr5:17201376-17201395 MsG0580025340.01.T01:intron 40.0%
! ATATTCCCCCATAGTATTGG+TGG - Chr5:17198523-17198542 MsG0580025340.01.T01:intron 40.0%
! CATTTTCTCGGGTTCATGTT+TGG - Chr5:17197064-17197083 MsG0580025340.01.T01:intron 40.0%
! GACTCTGAGAGAAGTCTTTA+AGG + Chr5:17203267-17203286 None:intergenic 40.0%
! GCAAGGGTAATCATTTTCTC+GGG - Chr5:17197053-17197072 MsG0580025340.01.T01:intron 40.0%
! GGATGCACATTTTCTTGTTC+TGG - Chr5:17197908-17197927 MsG0580025340.01.T01:intron 40.0%
! GGCAAGGGTAATCATTTTCT+CGG - Chr5:17197052-17197071 MsG0580025340.01.T01:intron 40.0%
! TAGGTATATACCTCTAGGAG+TGG + Chr5:17202961-17202980 None:intergenic 40.0%
! TCTTTCTTTTCTCCCTTTCG+AGG + Chr5:17202927-17202946 None:intergenic 40.0%
! TGTACCGGCACTTTAAGAAT+AGG - Chr5:17196632-17196651 MsG0580025340.01.T01:CDS 40.0%
! TTTGGGAGAGAGATTTTGGA+AGG + Chr5:17196839-17196858 None:intergenic 40.0%
! TTTGTTGAGTTTTCCGAGAG+AGG - Chr5:17203023-17203042 MsG0580025340.01.T01:intron 40.0%
!! AAAGGAGCATCTATCTGCAT+TGG - Chr5:17198018-17198037 MsG0580025340.01.T01:CDS 40.0%
!! ATATTCTTTTTGGGAGGAGG+AGG - Chr5:17197403-17197422 MsG0580025340.01.T01:intron 40.0%
!! CTAAAGTAGGATTGACTTGG+TGG - Chr5:17196865-17196884 MsG0580025340.01.T01:intron 40.0%
!! TTGGGAGAGAGATTTTGGAA+GGG + Chr5:17196838-17196857 None:intergenic 40.0%
!!! GGGTCTGCTAGTGATTTTTT+TGG - Chr5:17199175-17199194 MsG0580025340.01.T01:intron 40.0%
!!! TTCTTTTTCAGTGGATCAGG+AGG - Chr5:17202127-17202146 MsG0580025340.01.T01:intron 40.0%
AAATGCTAACGAGTGGCCTA+CGG - Chr5:17201755-17201774 MsG0580025340.01.T01:intron 45.0%
AATGAGATGCTTTCTCTCCG+CGG - Chr5:17203130-17203149 MsG0580025340.01.T01:CDS 45.0%
AATGATCTGTTGGAGGTTCC+AGG - Chr5:17197751-17197770 MsG0580025340.01.T01:intron 45.0%
AATGGGTAATAGCGATCCAG+TGG - Chr5:17198911-17198930 MsG0580025340.01.T01:intron 45.0%
ACCATTGCCTGTATTGTACG+TGG - Chr5:17202848-17202867 MsG0580025340.01.T01:intron 45.0%
AGAATATGAGGAGTCTGGCA+AGG - Chr5:17197036-17197055 MsG0580025340.01.T01:intron 45.0%
AGGAGGCAGTTTGGACATAT+TGG - Chr5:17197473-17197492 MsG0580025340.01.T01:intron 45.0%
ATTCAGGAACCTCCTCGAAA+GGG - Chr5:17202912-17202931 MsG0580025340.01.T01:intron 45.0%
ATTGTACGTGGACGATGGAA+AGG - Chr5:17202860-17202879 MsG0580025340.01.T01:intron 45.0%
CAACCTGGCATTGTTGAACA+AGG - Chr5:17198295-17198314 MsG0580025340.01.T01:intron 45.0%
CACGATTCCACAAGCAAGAA+CGG + Chr5:17199640-17199659 None:intergenic 45.0%
CATCATGATTGGTATGCGGA+GGG - Chr5:17197288-17197307 MsG0580025340.01.T01:CDS 45.0%
CCAAAGGACTCTTGTCTTAG+TGG - Chr5:17203411-17203430 MsG0580025340.01.T01:intron 45.0%
CCACTAAGACAAGAGTCCTT+TGG + Chr5:17203414-17203433 None:intergenic 45.0%
CCTGATGATAGGGGTTTGTA+AGG - Chr5:17198802-17198821 MsG0580025340.01.T01:intron 45.0%
CCTTACAAACCCCTATCATC+AGG + Chr5:17198805-17198824 None:intergenic 45.0%
CTCTAGCGAATACGTAGTGT+TGG - Chr5:17202461-17202480 MsG0580025340.01.T01:intron 45.0%
GAAAGATGATCGGCAACCAA+AGG - Chr5:17203395-17203414 MsG0580025340.01.T01:intron 45.0%
GAAGACAAACGCGTACATCA+TGG + Chr5:17200001-17200020 None:intergenic 45.0%
GAATATGAGGAGTCTGGCAA+GGG - Chr5:17197037-17197056 MsG0580025340.01.T01:intron 45.0%
GCGAACGAAGAGGACTATTA+TGG - Chr5:17200629-17200648 MsG0580025340.01.T01:intron 45.0%
GCGTCAAACTCACAGACAAA+CGG + Chr5:17196928-17196947 None:intergenic 45.0%
GGTAGTCATGCCTGATGATA+GGG - Chr5:17198792-17198811 MsG0580025340.01.T01:intron 45.0%
GTAGTCATGCCTGATGATAG+GGG - Chr5:17198793-17198812 MsG0580025340.01.T01:intron 45.0%
GTCTCTGCAGACTGAAGAAT+TGG - Chr5:17202204-17202223 MsG0580025340.01.T01:intron 45.0%
GTTACATTGAGCCCAACACT+TGG + Chr5:17202017-17202036 None:intergenic 45.0%
GTTCTTGCTTGTGGAATCGT+GGG - Chr5:17199639-17199658 MsG0580025340.01.T01:CDS 45.0%
GTTTGTCTGTGAGTTTGACG+CGG - Chr5:17196927-17196946 MsG0580025340.01.T01:intron 45.0%
TATTCAGGAACCTCCTCGAA+AGG - Chr5:17202911-17202930 MsG0580025340.01.T01:intron 45.0%
TCACCTTGTTCAACAATGCC+AGG + Chr5:17198301-17198320 None:intergenic 45.0%
TCATCATGATTGGTATGCGG+AGG - Chr5:17197287-17197306 MsG0580025340.01.T01:CDS 45.0%
TCCACGTACAATACAGGCAA+TGG + Chr5:17202852-17202871 None:intergenic 45.0%
TCCCACAGCATACTTCATGT+GGG + Chr5:17198438-17198457 None:intergenic 45.0%
TCCCACATGAAGTATGCTGT+GGG - Chr5:17198434-17198453 MsG0580025340.01.T01:intron 45.0%
TCTGTTGTATGATGCACCCA+TGG - Chr5:17199008-17199027 MsG0580025340.01.T01:intron 45.0%
TCTTCGACTGCAAGACAACA+CGG + Chr5:17202490-17202509 None:intergenic 45.0%
TGGTAGTCATGCCTGATGAT+AGG - Chr5:17198791-17198810 MsG0580025340.01.T01:intron 45.0%
TTCCCACAGCATACTTCATG+TGG + Chr5:17198439-17198458 None:intergenic 45.0%
TTCCCACATGAAGTATGCTG+TGG - Chr5:17198433-17198452 MsG0580025340.01.T01:intron 45.0%
TTCTTGCTTGTGGAATCGTG+GGG - Chr5:17199640-17199659 MsG0580025340.01.T01:CDS 45.0%
TTGGACATATTGGCGCAGTA+TGG - Chr5:17197483-17197502 MsG0580025340.01.T01:intron 45.0%
! AAACTACTGAGAAGGTGCGT+AGG + Chr5:17197241-17197260 None:intergenic 45.0%
! AACTACTGAGAAGGTGCGTA+GGG + Chr5:17197240-17197259 None:intergenic 45.0%
! AGGGAGAAAAGAAAGAGCGT+CGG - Chr5:17202931-17202950 MsG0580025340.01.T01:intron 45.0%
! ATTTTGCAGACGATCTTGCC+TGG - Chr5:17203451-17203470 MsG0580025340.01.T01:intron 45.0%
! CATGAGGGTATGATCTTTCC+AGG + Chr5:17203472-17203491 None:intergenic 45.0%
! TCATAGCTCAGAAGCACAGT+TGG + Chr5:17201986-17202005 None:intergenic 45.0%
! TTCTTTTCTCCCTTTCGAGG+AGG + Chr5:17202924-17202943 None:intergenic 45.0%
!! AGAGAGATTTTGGAAGGGAG+GGG + Chr5:17196833-17196852 None:intergenic 45.0%
!! CAAGGGTGGAAAGTTTTGTG+AGG + Chr5:17199563-17199582 None:intergenic 45.0%
!! GAGAGAGATTTTGGAAGGGA+GGG + Chr5:17196834-17196853 None:intergenic 45.0%
!!! TGGCCTACGGGCATTTTTTA+AGG - Chr5:17201768-17201787 MsG0580025340.01.T01:intron 45.0%
!!! AAGTATAATTTTATAAAATT+TGG + Chr5:17201468-17201487 None:intergenic 5.0%
!!! GAATTTTTTTTAAAAAAAAA+AGG + Chr5:17198598-17198617 None:intergenic 5.0%
AATGCTAACGAGTGGCCTAC+GGG - Chr5:17201756-17201775 MsG0580025340.01.T01:intron 50.0%
ACAAGGTGAAGTTGTCTGCC+AGG - Chr5:17198312-17198331 MsG0580025340.01.T01:intron 50.0%
ACTGGCTGTATGGTGTTCCA+TGG - Chr5:17198937-17198956 MsG0580025340.01.T01:intron 50.0%
AGGAAGCCAGTGTATAGCCA+TGG + Chr5:17198957-17198976 None:intergenic 50.0%
ATCCTCTTGATCAGCGAGAC+TGG - Chr5:17203505-17203524 MsG0580025340.01.T01:intron 50.0%
CCAAAGCTTCAGAGAGGCTT+CGG + Chr5:17200677-17200696 None:intergenic 50.0%
CCATCGTCCACGTACAATAC+AGG + Chr5:17202858-17202877 None:intergenic 50.0%
CCTGTATTGTACGTGGACGA+TGG - Chr5:17202855-17202874 MsG0580025340.01.T01:intron 50.0%
CGCAGCTTCCGAAAAGAGTT+AGG + Chr5:17200269-17200288 None:intergenic 50.0%
CGCTGATGTACAAACACCTG+AGG - Chr5:17202228-17202247 MsG0580025340.01.T01:intron 50.0%
CGTTCTTGCTTGTGGAATCG+TGG - Chr5:17199638-17199657 MsG0580025340.01.T01:CDS 50.0%
CTCCGCGGTGCATTACAATA+TGG - Chr5:17203145-17203164 MsG0580025340.01.T01:CDS 50.0%
CTTCCAACAATACCAGTGCC+TGG + Chr5:17201214-17201233 None:intergenic 50.0%
GAGGGAAAGAACACCTGTCT+GGG - Chr5:17201257-17201276 MsG0580025340.01.T01:CDS 50.0%
GCCATCTCAAAAACACGTGC+AGG - Chr5:17199490-17199509 MsG0580025340.01.T01:CDS 50.0%
GGTCTTGCTAGGCACTCTTT+GGG + Chr5:17201888-17201907 None:intergenic 50.0%
GGTGTTCCATGGCTATACAC+TGG - Chr5:17198948-17198967 MsG0580025340.01.T01:intron 50.0%
GTGCTCTGTTTGCAGTTGTC+AGG - Chr5:17198260-17198279 MsG0580025340.01.T01:intron 50.0%
TACCTACCAAGTCCACCGAA+TGG + Chr5:17201354-17201373 None:intergenic 50.0%
TACGTCTGTAGCACAAGTGC+AGG + Chr5:17200456-17200475 None:intergenic 50.0%
TAGGATCTGTTGGAGGTTCC+AGG - Chr5:17197789-17197808 MsG0580025340.01.T01:intron 50.0%
TAGGGGTTTGTAAGGGCTAG+TGG - Chr5:17198810-17198829 MsG0580025340.01.T01:intron 50.0%
TCCTCTTGATCAGCGAGACT+GGG - Chr5:17203506-17203525 MsG0580025340.01.T01:intron 50.0%
TGAGGGAAAGAACACCTGTC+TGG - Chr5:17201256-17201275 MsG0580025340.01.T01:CDS 50.0%
TTCAACAATGCCAGGTTGCG+TGG + Chr5:17198293-17198312 None:intergenic 50.0%
! CTCTTTCCTTCTCTAAGGGC+AGG - Chr5:17201054-17201073 MsG0580025340.01.T01:intron 50.0%
! CTGTTTTGCCGTCTCCTAAG+TGG - Chr5:17202261-17202280 MsG0580025340.01.T01:intron 50.0%
! TCCTTCTCTAAGGGCAGGTT+TGG - Chr5:17201059-17201078 MsG0580025340.01.T01:intron 50.0%
! TGCAAATCTAGCTCCCAGAC+AGG + Chr5:17201273-17201292 None:intergenic 50.0%
! TTCTAGCCATTCGGTGGACT+TGG - Chr5:17201345-17201364 MsG0580025340.01.T01:intron 50.0%
! TTCTCTAAGGGCAGGTTTGG+CGG - Chr5:17201062-17201081 MsG0580025340.01.T01:intron 50.0%
!! ATCTGCATTGGCTGACAAGC+TGG - Chr5:17198030-17198049 MsG0580025340.01.T01:intron 50.0%
!! GCCTGCACGTGTTTTTGAGA+TGG + Chr5:17199494-17199513 None:intergenic 50.0%
!! GGAGAGAGATTTTGGAAGGG+AGG + Chr5:17196835-17196854 None:intergenic 50.0%
!! TCACCAGGCACTGGTATTGT+TGG - Chr5:17201208-17201227 MsG0580025340.01.T01:CDS 50.0%
!! TCTGCATTGGCTGACAAGCT+GGG - Chr5:17198031-17198050 MsG0580025340.01.T01:intron 50.0%
AACAGGGCTGAACACAAGGG+TGG + Chr5:17199577-17199596 None:intergenic 55.0%
ACAAGCAAGAACGGCGATCC+CGG + Chr5:17199631-17199650 None:intergenic 55.0%
AGACGGAACTGCGAACGAAG+AGG - Chr5:17200619-17200638 MsG0580025340.01.T01:intron 55.0%
AGGAAAGTCACCACGCAACC+TGG - Chr5:17198280-17198299 MsG0580025340.01.T01:intron 55.0%
CCCTTGTGTTCAGCCCTGTT+CGG - Chr5:17199577-17199596 MsG0580025340.01.T01:CDS 55.0%
CCGAACAGGGCTGAACACAA+GGG + Chr5:17199580-17199599 None:intergenic 55.0%
GAAGAAAGCGGCCAACGAGT+GGG + Chr5:17201419-17201438 None:intergenic 55.0%
GCCAAACCTGCCCTTAGAGA+AGG + Chr5:17201063-17201082 None:intergenic 55.0%
GGGTAATAGCGATCCAGTGG+TGG - Chr5:17198914-17198933 MsG0580025340.01.T01:intron 55.0%
GGGTCTTGCTAGGCACTCTT+TGG + Chr5:17201889-17201908 None:intergenic 55.0%
TCCCAGTCTCGCTGATCAAG+AGG + Chr5:17203510-17203529 None:intergenic 55.0%
TCCGAACAGGGCTGAACACA+AGG + Chr5:17199581-17199600 None:intergenic 55.0%
TGCATGCAGAAGCCCGATCT+TGG + Chr5:17197194-17197213 None:intergenic 55.0%
TGCGCTCCAAAGCTTCAGAG+AGG + Chr5:17200683-17200702 None:intergenic 55.0%
TTCGTTCGCAGTTCCGTCTC+CGG + Chr5:17200618-17200637 None:intergenic 55.0%
! AGCCATTCGGTGGACTTGGT+AGG - Chr5:17201349-17201368 MsG0580025340.01.T01:intron 55.0%
! TTGGGGCGTTCTAGATCGTG+TGG + Chr5:17199804-17199823 None:intergenic 55.0%
!! ATAGCGATCCAGTGGTGGAC+TGG - Chr5:17198919-17198938 MsG0580025340.01.T01:intron 55.0%
!! CCGAAGCCTCTCTGAAGCTT+TGG - Chr5:17200674-17200693 MsG0580025340.01.T01:intron 55.0%
!! CTTTTTGGGAGGAGGAGGAC+AGG - Chr5:17197408-17197427 MsG0580025340.01.T01:intron 55.0%
!! GAGATTTTGGAAGGGAGGGG+AGG + Chr5:17196830-17196849 None:intergenic 55.0%
CAGCAGGAGAGTTGCCCCAA+AGG + Chr5:17203542-17203561 None:intergenic 60.0%
CCATACAGCCAGTCCACCAC+TGG + Chr5:17198930-17198949 None:intergenic 60.0%
CGTCGGCATTCCACTCCTAG+AGG - Chr5:17202948-17202967 MsG0580025340.01.T01:intron 60.0%
GAATGTGCGCGAGTGTCACC+AGG - Chr5:17201193-17201212 MsG0580025340.01.T01:CDS 60.0%
GGAAGAAAGCGGCCAACGAG+TGG + Chr5:17201420-17201439 None:intergenic 60.0%
GGGATCGCCGTTCTTGCTTG+TGG - Chr5:17199630-17199649 MsG0580025340.01.T01:CDS 60.0%
TTTGGAAGGGAGGGGAGGTG+AGG + Chr5:17196825-17196844 None:intergenic 60.0%
! GTGCTGTTGTGCTGTCGCAG+AGG - Chr5:17202659-17202678 MsG0580025340.01.T01:intron 60.0%
!! CCAGTGGTGGACTGGCTGTA+TGG - Chr5:17198927-17198946 MsG0580025340.01.T01:intron 60.0%
GCGCGAGTGTCACCAGGCAC+TGG - Chr5:17201199-17201218 MsG0580025340.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 17196605 17203614 17196605 ID=MsG0580025340.01;Name=MsG0580025340.01
Chr5 mRNA 17196605 17203614 17196605 ID=MsG0580025340.01.T01;Parent=MsG0580025340.01;Name=MsG0580025340.01.T01;_AED=0.62;_eAED=0.62;_QI=0|0.22|0.3|0.6|1|1|10|0|419
Chr5 exon 17203551 17203614 17203551 ID=MsG0580025340.01.T01:exon:20708;Parent=MsG0580025340.01.T01
Chr5 exon 17203087 17203193 17203087 ID=MsG0580025340.01.T01:exon:20707;Parent=MsG0580025340.01.T01
Chr5 exon 17202144 17202206 17202144 ID=MsG0580025340.01.T01:exon:20706;Parent=MsG0580025340.01.T01
Chr5 exon 17201190 17201296 17201190 ID=MsG0580025340.01.T01:exon:20705;Parent=MsG0580025340.01.T01
Chr5 exon 17200878 17200964 17200878 ID=MsG0580025340.01.T01:exon:20704;Parent=MsG0580025340.01.T01
Chr5 exon 17199420 17199665 17199420 ID=MsG0580025340.01.T01:exon:20703;Parent=MsG0580025340.01.T01
Chr5 exon 17198188 17198252 17198188 ID=MsG0580025340.01.T01:exon:20702;Parent=MsG0580025340.01.T01
Chr5 exon 17197970 17198043 17197970 ID=MsG0580025340.01.T01:exon:20701;Parent=MsG0580025340.01.T01
Chr5 exon 17197175 17197406 17197175 ID=MsG0580025340.01.T01:exon:20700;Parent=MsG0580025340.01.T01
Chr5 exon 17196605 17196819 17196605 ID=MsG0580025340.01.T01:exon:20699;Parent=MsG0580025340.01.T01
Chr5 CDS 17203551 17203614 17203551 ID=MsG0580025340.01.T01:cds;Parent=MsG0580025340.01.T01
Chr5 CDS 17203087 17203193 17203087 ID=MsG0580025340.01.T01:cds;Parent=MsG0580025340.01.T01
Chr5 CDS 17202144 17202206 17202144 ID=MsG0580025340.01.T01:cds;Parent=MsG0580025340.01.T01
Chr5 CDS 17201190 17201296 17201190 ID=MsG0580025340.01.T01:cds;Parent=MsG0580025340.01.T01
Chr5 CDS 17200878 17200964 17200878 ID=MsG0580025340.01.T01:cds;Parent=MsG0580025340.01.T01
Chr5 CDS 17199420 17199665 17199420 ID=MsG0580025340.01.T01:cds;Parent=MsG0580025340.01.T01
Chr5 CDS 17198188 17198252 17198188 ID=MsG0580025340.01.T01:cds;Parent=MsG0580025340.01.T01
Chr5 CDS 17197970 17198043 17197970 ID=MsG0580025340.01.T01:cds;Parent=MsG0580025340.01.T01
Chr5 CDS 17197175 17197406 17197175 ID=MsG0580025340.01.T01:cds;Parent=MsG0580025340.01.T01
Chr5 CDS 17196605 17196819 17196605 ID=MsG0580025340.01.T01:cds;Parent=MsG0580025340.01.T01
Gene Sequence

>MsG0580025340.01.T01

ATGTTTATGAAAGTTAAGCTTTCTAGTTGTACCGGCACTTTAAGAATAGGTTTAGTCATGAAGGATGATGAAGAAGAATATGAGGAGTCTGGCAAGGGTAATCATTTTCTCGGGTTCATGTTTGGAAATGTTGATAATTCTGGTGATCTTGATGTTGATTATCTTGATGAGGATGCAAAGGAGCATCTATCTGCATTGGCTGACAAGCTGGGTCCATCATTGACAGATATAGATCGATCCAGTGGTGGACTGGCTGTATGGTGTTCCATGGCTATACACTGGCTTCCTAAATATGGTGTCAGTGTATGTGCTTCTGCTTTCTGTTGTATGATGCACCCATGGCTCCCCATATTGATGAAGCAAAGCTTTATTAAAAGAGTGAAATCTTTTGATATTTTAGAGGAAGAAATTGAAGTAAATCTGGATCTATTGTGGGGAAAGGCTGAAGATGCTGTCGATTACGAAGATATTGATGAAGAGTATGATGGTCCGGAGACGGAACTGCGAACGAAGAGGACTATTATGGCCAAAAAAGGATTTTTTCGCTGCCGAAGCCTCTCTGAAGCTTTGGAGCGCAAAACTTCTGTCTTCGATGATGAAAATTATGATGAAGAATCTGATAAGGAACAAGACTTTGTGAACAATGAAGCTAAAGTCGAACATCTCTCTATCTGCTTGAATTTGAGTATACCAACTGTGCTTCTGAGCTATGATTTAACACCCAAGTGTTGGGCTCAATGGAGTGCTCTTGAGCATGATTTACAAGTGTCTCTGCAGACTGAAGAATTGGACGCTGATGTACAAACACCTGAGGAAGGACCTGAATTTTTGAAGAGGTCTATGGCTACACCATTGCCTGTATTGTACGTGGACGATGGAAAGGCAGTTTTACGCTTTTCTGAAATCTTTGGTATTCAGGAACCTCCTCGAAAGGGAGAAAAGAAAGAGCGTCGGCATTCCACTCCTAGAGGTATATACCTAGAGATAGCACATTTACCTGAATTCGTTTTGCAAATGTTAGAATTTGTTGAGTTTTCCGAGAGAGATGATCGGCAACCAAAGGACTCTTGTCTTAGTGGTGAACCAATGAAAGAGGATTTTGCAGACGATCTTGCCTGGAAAGATCATACCCTCATGTTAGCCAACTTTTATCCTCTTGATCAGCGAGACTGGGAAGATGAAATCCTTTGGGGCAACTCTCCTGCTGCAAGTGATAATGATAATATGTTGAGAGCTGTGAAATTTCTGGATCTGAATTGA
Protein sequence

>MsG0580025340.01.T01

MFMKVKLSSCTGTLRIGLVMKDDEEEYEESGKGNHFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDRSSGGLAVWCSMAIHWLPKYGVSVCASAFCCMMHPWLPILMKQSFIKRVKSFDILEEEIEVNLDLLWGKAEDAVDYEDIDEEYDGPETELRTKRTIMAKKGFFRCRSLSEALERKTSVFDDENYDEESDKEQDFVNNEAKVEHLSICLNLSIPTVLLSYDLTPKCWAQWSALEHDLQVSLQTEELDADVQTPEEGPEFLKRSMATPLPVLYVDDGKAVLRFSEIFGIQEPPRKGEKKERRHSTPRGIYLEIAHLPEFVLQMLEFVEFSERDDRQPKDSCLSGEPMKEDFADDLAWKDHTLMLANFYPLDQRDWEDEILWGNSPAASDNDNMLRAVKFLDLN*