AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000614.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000614.01.T01 MTR_1g011750 100.000 134 0 0 1 134 1 134 1.34e-93 266
MsG0180000614.01.T01 MTR_1g011850 100.000 134 0 0 1 134 1 134 1.34e-93 266
MsG0180000614.01.T01 MTR_1g071040 86.567 134 18 0 1 134 1 134 2.58e-73 215
MsG0180000614.01.T01 MTR_1g114050 81.250 128 24 0 7 134 4 131 3.79e-71 209
MsG0180000614.01.T01 MTR_4g048490 61.940 134 22 1 1 134 1 105 4.96e-41 132
MsG0180000614.01.T01 MTR_2g082510 64.545 110 37 2 24 132 14 122 1.87e-40 132
MsG0180000614.01.T01 MTR_2g082220 64.545 110 37 2 24 132 14 122 2.52e-40 131
MsG0180000614.01.T01 MTR_7g108320 58.333 132 47 4 1 130 1 126 3.25e-40 131
MsG0180000614.01.T01 MTR_7g114060 58.197 122 49 2 10 130 3 123 1.06e-39 130
MsG0180000614.01.T01 MTR_7g114040 58.197 122 49 2 10 130 3 123 1.06e-39 130
MsG0180000614.01.T01 MTR_7g093910 61.682 107 39 2 25 130 21 126 3.91e-38 126
MsG0180000614.01.T01 MTR_7g113160 55.652 115 49 2 19 132 19 132 9.60e-37 123
MsG0180000614.01.T01 MTR_2g096610 59.292 113 44 2 23 134 19 130 2.34e-36 122
MsG0180000614.01.T01 MTR_4g063280 59.292 113 44 2 23 134 15 126 7.03e-36 120
MsG0180000614.01.T01 MTR_4g071150 61.111 108 40 2 27 133 25 131 5.73e-35 118
MsG0180000614.01.T01 MTR_8g086640 60.550 109 41 2 27 134 25 132 6.37e-35 118
MsG0180000614.01.T01 MTR_4g064967 59.633 109 42 2 27 134 25 132 7.16e-35 118
MsG0180000614.01.T01 MTR_4g064005 59.633 109 42 2 27 134 25 132 8.43e-35 118
MsG0180000614.01.T01 MTR_2g096570 60.185 108 41 2 27 133 24 130 1.16e-34 118
MsG0180000614.01.T01 MTR_7g027610 57.391 115 25 1 20 134 8 98 1.91e-34 116
MsG0180000614.01.T01 MTR_4g063410 60.952 105 39 2 27 130 25 128 5.14e-34 116
MsG0180000614.01.T01 MTR_0653s0030 56.481 108 22 1 5 112 15 97 1.27e-30 107
MsG0180000614.01.T01 MTR_7g114050 53.448 116 40 5 19 132 13 116 2.20e-28 101
MsG0180000614.01.T01 MTR_4g063300 62.687 67 24 1 55 120 17 83 5.00e-20 79.3
MsG0180000614.01.T01 MTR_6g005150 45.283 106 47 4 27 130 27 123 1.37e-19 79.0
MsG0180000614.01.T01 MTR_7g427690 78.947 38 8 0 96 133 412 449 4.76e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000614.01.T01 AT1G52740 88.060 134 16 0 1 134 1 134 5.26e-76 222
MsG0180000614.01.T01 AT3G54560 84.559 136 19 1 1 134 1 136 7.74e-72 211
MsG0180000614.01.T01 AT3G54560 84.559 136 19 1 1 134 1 136 7.74e-72 211
MsG0180000614.01.T01 AT2G38810 81.618 136 23 1 1 134 1 136 1.01e-71 211
MsG0180000614.01.T01 AT2G38810 81.618 136 23 1 1 134 1 136 1.01e-71 211
MsG0180000614.01.T01 AT2G38810 81.618 136 23 1 1 134 1 136 1.01e-71 211
MsG0180000614.01.T01 AT2G38810 81.618 136 23 1 1 134 1 136 1.01e-71 211
MsG0180000614.01.T01 AT4G13570 66.667 111 33 1 18 124 8 118 3.28e-45 143
MsG0180000614.01.T01 AT4G13570 75.556 90 22 0 35 124 35 124 3.59e-44 141
MsG0180000614.01.T01 AT4G27230 64.545 110 37 2 24 132 14 122 2.42e-40 131
MsG0180000614.01.T01 AT4G27230 64.545 110 37 2 24 132 14 122 2.42e-40 131
MsG0180000614.01.T01 AT5G54640 64.545 110 37 2 24 132 14 122 2.45e-40 131
MsG0180000614.01.T01 AT3G20670 65.741 108 35 2 24 130 14 120 6.88e-40 130
MsG0180000614.01.T01 AT1G08880 64.762 105 35 2 25 128 21 124 1.01e-39 130
MsG0180000614.01.T01 AT1G51060 63.636 110 38 2 24 132 14 122 1.11e-39 130
MsG0180000614.01.T01 AT1G54690 63.810 105 36 2 25 128 21 124 2.89e-39 129
MsG0180000614.01.T01 AT5G02560 61.947 113 41 2 23 134 21 132 1.19e-38 128
MsG0180000614.01.T01 AT5G27670 60.870 115 43 2 19 132 18 131 4.54e-37 124
MsG0180000614.01.T01 AT5G59870 61.261 111 41 2 23 132 21 130 3.64e-36 121
MsG0180000614.01.T01 AT5G02560 51.095 137 41 3 23 134 21 156 3.79e-33 115

Find 53 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTTAACTGCAGAGGTTT+TGG 0.254851 1:+8704546 MsG0180000614.01.T01:CDS
TCCTTGTCTTTGAGGTTTGC+TGG 0.259581 1:-8702026 None:intergenic
TCTTCTTGTCCTTGTCTTTG+AGG 0.316058 1:-8702034 None:intergenic
TTCCTCAAGAGCTGGTCTTC+AGG 0.343744 1:+8702070 MsG0180000614.01.T01:CDS
CCTCTGCAGTTAAATATTCC+AGG 0.399309 1:-8704540 None:intergenic
GGTGATAACAACTTTATTTG+TGG 0.407928 1:+8704803 MsG0180000614.01.T01:three_prime_UTR
GAACTGTTTGAACTGATTTG+AGG 0.432017 1:+8705004 MsG0180000614.01.T01:three_prime_UTR
CAATGGCACATGGAAGAGTT+GGG 0.442531 1:+8704488 MsG0180000614.01.T01:CDS
TATGAACATTCATTCCTTCG+AGG 0.453552 1:-8704731 None:intergenic
AGTTTATTCTGCCGCTATCC+TGG 0.454001 1:+8704522 MsG0180000614.01.T01:CDS
ACAATGGCACATGGAAGAGT+TGG 0.476378 1:+8704487 MsG0180000614.01.T01:CDS
GGAGCGAAGGGTTTGACAAC+CGG 0.477894 1:+8701996 MsG0180000614.01.T01:CDS
CTCATCAAAGGAACAATAGC+TGG 0.487626 1:+8704664 MsG0180000614.01.T01:CDS
TTGAAGTGCGAAAACATGTC+GGG 0.497395 1:+8701969 MsG0180000614.01.T01:exon
GTTTGAACTGATTTGAGGAA+AGG 0.499655 1:+8705009 MsG0180000614.01.T01:three_prime_UTR
ATAAGAGACTTGTGGATATG+AGG 0.507095 1:-8704700 None:intergenic
GGATAATTTGCTCCTTGCGT+TGG 0.524291 1:+8704824 MsG0180000614.01.T01:three_prime_UTR
AGACGATGGATACGTCCGAC+AGG 0.539450 1:-8704451 None:intergenic
AGCTCTTGAGGAACGAGATG+TGG 0.542232 1:-8702060 None:intergenic
AACCTGAAGACCAGCTCTTG+AGG 0.543571 1:-8702072 None:intergenic
ACATCTCGTTCCTCAAGAGC+TGG 0.546311 1:+8702062 MsG0180000614.01.T01:CDS
CCTGGAATATTTAACTGCAG+AGG 0.550682 1:+8704540 MsG0180000614.01.T01:CDS
CAATGCAAGCAAGGATCTGA+AGG 0.565081 1:+8704579 MsG0180000614.01.T01:CDS
CATATGTCTAGGATTAATGT+TGG 0.566765 1:+8704948 MsG0180000614.01.T01:three_prime_UTR
TGCGAAAACATGTCGGGGAA+AGG 0.567757 1:+8701975 MsG0180000614.01.T01:exon
GTTGGCTGGCAATGCAAGCA+AGG 0.571379 1:+8704570 MsG0180000614.01.T01:CDS
GAACTTGACACTCTCATCAA+AGG 0.571379 1:+8704652 MsG0180000614.01.T01:CDS
AGTTTCAGATAATCTAAAGA+AGG 0.572907 1:-8704865 None:intergenic
ACTTGTTGATAAGAGACTTG+TGG 0.572936 1:-8704708 None:intergenic
TGTCAAGTTCTTCGTCTCCA+CGG 0.583078 1:-8704639 None:intergenic
ATAGCAAGCTGTAGATGTCT+CGG 0.584334 1:-8704616 None:intergenic
CATCTACAGCTTGCTATCCG+TGG 0.586408 1:+8704622 MsG0180000614.01.T01:CDS
TCCATCGTCTTCTGAAGTCA+AGG 0.589423 1:+8704464 MsG0180000614.01.T01:CDS
TCAGATAATCTAAAGAAGGA+TGG 0.590080 1:-8704861 None:intergenic
TTTGAAGTGCGAAAACATGT+CGG 0.591882 1:+8701968 MsG0180000614.01.T01:exon
GTATGGTACTGCATATGTCT+AGG 0.597951 1:+8704937 MsG0180000614.01.T01:three_prime_UTR
CATGTCGGGGAAAGGAGCGA+AGG 0.599837 1:+8701983 MsG0180000614.01.T01:exon
GCTCTTGAGGAACGAGATGT+GGG 0.607406 1:-8702059 None:intergenic
AAAGGAACAATAGCTGGTGG+TGG 0.608922 1:+8704670 MsG0180000614.01.T01:CDS
TCTTATCAACAAGTCCTCGA+AGG 0.615894 1:+8704717 MsG0180000614.01.T01:CDS
AAGTCAAGGACAATGGCACA+TGG 0.622887 1:+8704478 MsG0180000614.01.T01:CDS
ATGTCGGGGAAAGGAGCGAA+GGG 0.624226 1:+8701984 MsG0180000614.01.T01:CDS
CAATCAATCAAACCAACGCA+AGG 0.626065 1:-8704836 None:intergenic
GACGATGGATACGTCCGACA+GGG 0.626692 1:-8704450 None:intergenic
TTCTACATACAGTTCCCTGT+CGG 0.628096 1:+8704436 MsG0180000614.01.T01:intron
ACCAGCAAACCTCAAAGACA+AGG 0.637885 1:+8702025 MsG0180000614.01.T01:CDS
TAATTCGTTCTAATTAACGC+AGG 0.639924 1:+8704752 MsG0180000614.01.T01:three_prime_UTR
AATGGCACATGGAAGAGTTG+GGG 0.645846 1:+8704489 MsG0180000614.01.T01:CDS
TGAAGTGCGAAAACATGTCG+GGG 0.649052 1:+8701970 MsG0180000614.01.T01:exon
TCTTCTGAAGTCAAGGACAA+TGG 0.655563 1:+8704471 MsG0180000614.01.T01:CDS
ATCAAAGGAACAATAGCTGG+TGG 0.661257 1:+8704667 MsG0180000614.01.T01:CDS
TCCTTGACTTCAGAAGACGA+TGG 0.668973 1:-8704465 None:intergenic
AGTTAAATATTCCAGGATAG+CGG 0.686777 1:-8704533 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATAAACATAAAAAATATTT+TGG + Chr1:8703577-8703596 MsG0180000614.01.T01:intron 10.0%
!!! TTTTTAAGTTATAGTATTTT+AGG + Chr1:8703674-8703693 MsG0180000614.01.T01:intron 10.0%
!!! AGTATTATTTTATAACTGTT+TGG + Chr1:8703869-8703888 MsG0180000614.01.T01:intron 15.0%
!!! TTTTATCAAGATTCAAATTT+GGG + Chr1:8702387-8702406 MsG0180000614.01.T01:intron 15.0%
!!! TTTTTATCAAGATTCAAATT+TGG + Chr1:8702386-8702405 MsG0180000614.01.T01:intron 15.0%
!! ACGTATAATATATATACAAG+AGG - Chr1:8703448-8703467 None:intergenic 20.0%
!! TTATTATTTCCCTTCTTAAT+AGG + Chr1:8703207-8703226 MsG0180000614.01.T01:intron 20.0%
!!! AACTTTTTTCTCTTTTGATA+TGG + Chr1:8704884-8704903 MsG0180000614.01.T01:three_prime_UTR 20.0%
!!! AATTACCTTGTTTTGTTTTA+TGG + Chr1:8702580-8702599 MsG0180000614.01.T01:intron 20.0%
!!! AGAAGGGAAATAATAATTTT+AGG - Chr1:8703203-8703222 None:intergenic 20.0%
!!! GATGGATTTTAATGTAATTT+CGG + Chr1:8704782-8704801 MsG0180000614.01.T01:three_prime_UTR 20.0%
!!! TCAAATTAGTTTCAGAATTA+TGG + Chr1:8702806-8702825 MsG0180000614.01.T01:intron 20.0%
!!! TTGAATTTTATTGAACAACT+TGG + Chr1:8702753-8702772 MsG0180000614.01.T01:intron 20.0%
!!! TTTTGTTAAAAAATTGTGAC+AGG + Chr1:8702275-8702294 MsG0180000614.01.T01:intron 20.0%
!!! TTTTTATCTAAGATGAAGAA+TGG + Chr1:8702347-8702366 MsG0180000614.01.T01:intron 20.0%
! AAAAAATTGTGACAGGATAT+TGG + Chr1:8702282-8702301 MsG0180000614.01.T01:intron 25.0%
! AAAAATTGTGACAGGATATT+GGG + Chr1:8702283-8702302 MsG0180000614.01.T01:intron 25.0%
! AAAGGAAGACAATAAACTAA+AGG - Chr1:8703106-8703125 None:intergenic 25.0%
! ACATATACACCTATTAAGAA+GGG - Chr1:8703219-8703238 None:intergenic 25.0%
! ACTATTAATTATCTGTGTGT+AGG - Chr1:8702888-8702907 None:intergenic 25.0%
! AGAATTTCTTAGTGATTCAT+TGG - Chr1:8703651-8703670 None:intergenic 25.0%
! AGTTTCAGATAATCTAAAGA+AGG - Chr1:8704868-8704887 None:intergenic 25.0%
! ATAAGCCATAAAACAAAACA+AGG - Chr1:8702588-8702607 None:intergenic 25.0%
! ATTAGATAAAAGTTAGGAGA+AGG - Chr1:8702780-8702799 None:intergenic 25.0%
! CAGTTAAGCAAATTGAAAAT+GGG - Chr1:8702507-8702526 None:intergenic 25.0%
! CTATTAATTATCTGTGTGTA+GGG - Chr1:8702887-8702906 None:intergenic 25.0%
! GAAAATCACTATATAGACAA+CGG - Chr1:8702458-8702477 None:intergenic 25.0%
! GTAAATTATGTTGCATTTGT+TGG + Chr1:8704361-8704380 MsG0180000614.01.T01:intron 25.0%
! TACATATACACCTATTAAGA+AGG - Chr1:8703220-8703239 None:intergenic 25.0%
! TATGTTTGTATATGTGAGTA+AGG + Chr1:8703250-8703269 MsG0180000614.01.T01:intron 25.0%
! TATTAATTATCTGTGTGTAG+GGG - Chr1:8702886-8702905 None:intergenic 25.0%
! TCAGTTAAGCAAATTGAAAA+TGG - Chr1:8702508-8702527 None:intergenic 25.0%
! TGTAGTTATCACTTAATCTT+TGG + Chr1:8703470-8703489 MsG0180000614.01.T01:intron 25.0%
! TTTCCATTTGCAAATTTCAT+GGG - Chr1:8702718-8702737 None:intergenic 25.0%
!! AGGGAAATAATAATTTTAGG+AGG - Chr1:8703200-8703219 None:intergenic 25.0%
!! CCTAACTTTTATCTAATCTA+CGG + Chr1:8702783-8702802 MsG0180000614.01.T01:intron 25.0%
!! TCTCTTTTCGAAAAAAGAAA+AGG - Chr1:8703124-8703143 None:intergenic 25.0%
!! TTTTCCATTTGCAAATTTCA+TGG - Chr1:8702719-8702738 None:intergenic 25.0%
!!! ATTTTAGCATGCTTAAAATG+TGG - Chr1:8704328-8704347 None:intergenic 25.0%
!!! GGCTGTTTATTTTATTTCTT+TGG + Chr1:8703045-8703064 MsG0180000614.01.T01:intron 25.0%
!!! GGGAAATAATAATTTTAGGA+GGG - Chr1:8703199-8703218 None:intergenic 25.0%
AAGAAAACGATGAAGAGAAA+GGG - Chr1:8702117-8702136 None:intergenic 30.0%
AATAATTAACCGCTTGCAAA+AGG - Chr1:8704270-8704289 None:intergenic 30.0%
AATTTCATGGGTGTAAATGT+TGG - Chr1:8702706-8702725 None:intergenic 30.0%
AATTTGTCTCATGAAACTGT+AGG + Chr1:8702677-8702696 MsG0180000614.01.T01:intron 30.0%
AGTTAAATATTCCAGGATAG+CGG - Chr1:8704536-8704555 None:intergenic 30.0%
AGTTATCACTTAATCTTTGG+TGG + Chr1:8703473-8703492 MsG0180000614.01.T01:intron 30.0%
ATATATACAAGAGGAATGCT+AGG - Chr1:8703439-8703458 None:intergenic 30.0%
ATGTAGAAAGATGTTCATGA+TGG - Chr1:8704424-8704443 None:intergenic 30.0%
ATTAACGCAGGAAAAAAAGA+TGG + Chr1:8704764-8704783 MsG0180000614.01.T01:three_prime_UTR 30.0%
CCAAAACAAAAGAGTGAAAA+AGG - Chr1:8702173-8702192 None:intergenic 30.0%
CCGTAGATTAGATAAAAGTT+AGG - Chr1:8702786-8702805 None:intergenic 30.0%
CTTGTGTGGAAAAATTATCT+TGG + Chr1:8703712-8703731 MsG0180000614.01.T01:intron 30.0%
GGTCTTGACAAATAAAACAT+GGG + Chr1:8703618-8703637 MsG0180000614.01.T01:intron 30.0%
GTATTAGAGAATGTGTTCAA+AGG - Chr1:8703289-8703308 None:intergenic 30.0%
TAATTCGTTCTAATTAACGC+AGG + Chr1:8704752-8704771 MsG0180000614.01.T01:three_prime_UTR 30.0%
TCAGATAATCTAAAGAAGGA+TGG - Chr1:8704864-8704883 None:intergenic 30.0%
TCTAATACTCACTCTCTTAT+TGG + Chr1:8703301-8703320 MsG0180000614.01.T01:intron 30.0%
TGCGAAAGAATACAAACAAA+AGG - Chr1:8703559-8703578 None:intergenic 30.0%
TTAGTTTCAGAATTATGGCA+CGG + Chr1:8702811-8702830 MsG0180000614.01.T01:intron 30.0%
TTGAATATGTTCACATGTGT+CGG + Chr1:8702925-8702944 MsG0180000614.01.T01:intron 30.0%
! ACTTGATAAGAAGTCTTATG+AGG + Chr1:8703837-8703856 MsG0180000614.01.T01:intron 30.0%
! ATATTTAACTGCAGAGGTTT+TGG + Chr1:8704546-8704565 MsG0180000614.01.T01:CDS 30.0%
! CATATGTCTAGGATTAATGT+TGG + Chr1:8704948-8704967 MsG0180000614.01.T01:three_prime_UTR 30.0%
! GGTGATAACAACTTTATTTG+TGG + Chr1:8704803-8704822 MsG0180000614.01.T01:three_prime_UTR 30.0%
! TGATTATTTCCTTTTGCAAG+CGG + Chr1:8704258-8704277 MsG0180000614.01.T01:intron 30.0%
! TGGTCTTGACAAATAAAACA+TGG + Chr1:8703617-8703636 MsG0180000614.01.T01:intron 30.0%
! TTGGACTTTTAATAGAGACT+AGG + Chr1:8703064-8703083 MsG0180000614.01.T01:intron 30.0%
!! ACATTCTCACTTTTGTTGTA+TGG + Chr1:8704920-8704939 MsG0180000614.01.T01:three_prime_UTR 30.0%
!! CCTTTTTCACTCTTTTGTTT+TGG + Chr1:8702170-8702189 MsG0180000614.01.T01:intron 30.0%
!!! AGCTTGAATGGTTTTTTGTA+GGG - Chr1:8703897-8703916 None:intergenic 30.0%
!!! TGTTTTATTTGTCAAGACCA+AGG - Chr1:8703617-8703636 None:intergenic 30.0%
AAAATTGAACCCACACAAAG+TGG + Chr1:8703351-8703370 MsG0180000614.01.T01:intron 35.0%
ACACCCATGAAATTTGCAAA+TGG + Chr1:8702712-8702731 MsG0180000614.01.T01:intron 35.0%
ACGCCTTTAATCTTAAGTGT+TGG + Chr1:8703007-8703026 MsG0180000614.01.T01:intron 35.0%
ATAAGAGACTTGTGGATATG+AGG - Chr1:8704703-8704722 None:intergenic 35.0%
ATTTATCCCACATCATCATC+CGG + Chr1:8704394-8704413 MsG0180000614.01.T01:intron 35.0%
CAAGAAAACGATGAAGAGAA+AGG - Chr1:8702118-8702137 None:intergenic 35.0%
CTAAAGGAGACTTCAAATCA+AGG - Chr1:8703090-8703109 None:intergenic 35.0%
GAAAAGAGATGATGCATGAA+TGG + Chr1:8703135-8703154 MsG0180000614.01.T01:intron 35.0%
GAGGAAAGGAAATAAGTGAA+TGG + Chr1:8705023-8705042 MsG0180000614.01.T01:three_prime_UTR 35.0%
GATTTCTTGTGTCATGTTGA+TGG + Chr1:8702526-8702545 MsG0180000614.01.T01:intron 35.0%
GCACCAACACTTAAGATTAA+AGG - Chr1:8703013-8703032 None:intergenic 35.0%
TATGAACATTCATTCCTTCG+AGG - Chr1:8704734-8704753 None:intergenic 35.0%
TTAGTAATCCAAAAGCGAGA+AGG - Chr1:8704080-8704099 None:intergenic 35.0%
! AAATGCTAACAAGTCTTGTG+TGG + Chr1:8703698-8703717 MsG0180000614.01.T01:intron 35.0%
! ACTTGTTGATAAGAGACTTG+TGG - Chr1:8704711-8704730 None:intergenic 35.0%
! AGATGTTCATGATGGAAAAC+CGG - Chr1:8704416-8704435 None:intergenic 35.0%
! CAAAAAACCTTTGACTTACC+AGG - Chr1:8704145-8704164 None:intergenic 35.0%
! TACATTTTCCTTCTCGCTTT+TGG + Chr1:8704069-8704088 MsG0180000614.01.T01:intron 35.0%
! TTTGAAGTGCGAAAACATGT+CGG + Chr1:8701968-8701987 MsG0180000614.01.T01:exon 35.0%
!! GAACTGTTTGAACTGATTTG+AGG + Chr1:8705004-8705023 MsG0180000614.01.T01:three_prime_UTR 35.0%
!! GCATGCTAAAATTTGTTGTC+TGG + Chr1:8704336-8704355 MsG0180000614.01.T01:intron 35.0%
!! GTTTGAACTGATTTGAGGAA+AGG + Chr1:8705009-8705028 MsG0180000614.01.T01:three_prime_UTR 35.0%
!! TAATAATTTTAGGAGGGCCA+TGG - Chr1:8703193-8703212 None:intergenic 35.0%
!! TGTTGGTGCTACATTGTTTA+TGG + Chr1:8703024-8703043 MsG0180000614.01.T01:intron 35.0%
!!! CTTGAATGGTTTTTTGTAGG+GGG - Chr1:8703895-8703914 None:intergenic 35.0%
!!! GAGCTTGAATGGTTTTTTGT+AGG - Chr1:8703898-8703917 None:intergenic 35.0%
!!! GCTTGAATGGTTTTTTGTAG+GGG - Chr1:8703896-8703915 None:intergenic 35.0%
AAGTAGCAGCCTGACATAAA+AGG + Chr1:8704116-8704135 MsG0180000614.01.T01:intron 40.0%
ACTTCTTATCAAGTGCCCTT+AGG - Chr1:8703831-8703850 None:intergenic 40.0%
ATAGCAAGCTGTAGATGTCT+CGG - Chr1:8704619-8704638 None:intergenic 40.0%
ATCAAAGGAACAATAGCTGG+TGG + Chr1:8704667-8704686 MsG0180000614.01.T01:CDS 40.0%
CAATCAATCAAACCAACGCA+AGG - Chr1:8704839-8704858 None:intergenic 40.0%
CCTCTGCAGTTAAATATTCC+AGG - Chr1:8704543-8704562 None:intergenic 40.0%
CCTGGAATATTTAACTGCAG+AGG + Chr1:8704540-8704559 MsG0180000614.01.T01:CDS 40.0%
CTCATCAAAGGAACAATAGC+TGG + Chr1:8704664-8704683 MsG0180000614.01.T01:CDS 40.0%
CTGTGAGTGACTAGTATCTT+TGG + Chr1:8704224-8704243 MsG0180000614.01.T01:intron 40.0%
CTTCTTAACAAGTGCCCTAA+GGG + Chr1:8703813-8703832 MsG0180000614.01.T01:intron 40.0%
CTTCTTATCAAGTGCCCTTA+GGG - Chr1:8703830-8703849 None:intergenic 40.0%
GAACTTGACACTCTCATCAA+AGG + Chr1:8704652-8704671 MsG0180000614.01.T01:CDS 40.0%
GATGAAGAGAAAGGGTAAGA+GGG - Chr1:8702109-8702128 None:intergenic 40.0%
GTATGGTACTGCATATGTCT+AGG + Chr1:8704937-8704956 MsG0180000614.01.T01:three_prime_UTR 40.0%
TAATTATCTGTGTGTAGGGG+CGG - Chr1:8702883-8702902 None:intergenic 40.0%
TACCAACACATGTTTCACTC+CGG + Chr1:8702982-8703001 MsG0180000614.01.T01:intron 40.0%
TCTTATCAACAAGTCCTCGA+AGG + Chr1:8704717-8704736 MsG0180000614.01.T01:CDS 40.0%
TCTTCTTAACAAGTGCCCTA+AGG + Chr1:8703812-8703831 MsG0180000614.01.T01:intron 40.0%
TCTTCTTGTCCTTGTCTTTG+AGG - Chr1:8702037-8702056 None:intergenic 40.0%
TTCTACATACAGTTCCCTGT+CGG + Chr1:8704436-8704455 MsG0180000614.01.T01:intron 40.0%
TTGAAGTGCGAAAACATGTC+GGG + Chr1:8701969-8701988 MsG0180000614.01.T01:exon 40.0%
! GTATCTAGGACCTTGAGTTA+GGG + Chr1:8702637-8702656 MsG0180000614.01.T01:intron 40.0%
! TATCTAGGACCTTGAGTTAG+GGG + Chr1:8702638-8702657 MsG0180000614.01.T01:intron 40.0%
!! CTTAAGATTAAAGGCGTCTC+CGG - Chr1:8703004-8703023 None:intergenic 40.0%
!! TCTTCTGAAGTCAAGGACAA+TGG + Chr1:8704471-8704490 MsG0180000614.01.T01:CDS 40.0%
!! TGTCATGTTGATGGTGTACA+TGG + Chr1:8702535-8702554 MsG0180000614.01.T01:intron 40.0%
!!! AGAGAGAGATTTGGCTTTTG+AGG - Chr1:8701917-8701936 None:intergenic 40.0%
AAAGGAACAATAGCTGGTGG+TGG + Chr1:8704670-8704689 MsG0180000614.01.T01:CDS 45.0%
AAGTCAAGGACAATGGCACA+TGG + Chr1:8704478-8704497 MsG0180000614.01.T01:CDS 45.0%
AATGGCACATGGAAGAGTTG+GGG + Chr1:8704489-8704508 MsG0180000614.01.T01:CDS 45.0%
ACAAAGTCAGTGGCGTATCT+AGG + Chr1:8702623-8702642 MsG0180000614.01.T01:intron 45.0%
ACAATGGCACATGGAAGAGT+TGG + Chr1:8704487-8704506 MsG0180000614.01.T01:CDS 45.0%
ACCAGCAAACCTCAAAGACA+AGG + Chr1:8702025-8702044 MsG0180000614.01.T01:CDS 45.0%
ACTCGAGCTTCTATCCTCAT+AGG - Chr1:8703525-8703544 None:intergenic 45.0%
AGATGATGCATGAATGGCTG+TGG + Chr1:8703141-8703160 MsG0180000614.01.T01:intron 45.0%
AGTTTATTCTGCCGCTATCC+TGG + Chr1:8704522-8704541 MsG0180000614.01.T01:CDS 45.0%
ATTGAACCCACACAAAGTGG+TGG + Chr1:8703354-8703373 MsG0180000614.01.T01:intron 45.0%
CAATGCAAGCAAGGATCTGA+AGG + Chr1:8704579-8704598 MsG0180000614.01.T01:CDS 45.0%
CAATGGCACATGGAAGAGTT+GGG + Chr1:8704488-8704507 MsG0180000614.01.T01:CDS 45.0%
CCTCATAGGAGCCAAAAAAG+CGG - Chr1:8703511-8703530 None:intergenic 45.0%
CGATGAAGAGAAAGGGTAAG+AGG - Chr1:8702110-8702129 None:intergenic 45.0%
GAGAGAGAGAGAGAGAGATT+TGG - Chr1:8701926-8701945 None:intergenic 45.0%
TATCAGCGACAGAGCTTGAA+TGG - Chr1:8703909-8703928 None:intergenic 45.0%
TATGTCCCACCACTTTGTGT+GGG - Chr1:8703363-8703382 None:intergenic 45.0%
TCCTTGACTTCAGAAGACGA+TGG - Chr1:8704468-8704487 None:intergenic 45.0%
TGAAGTGCGAAAACATGTCG+GGG + Chr1:8701970-8701989 MsG0180000614.01.T01:exon 45.0%
TGGAGATGTGATTCGAACCT+TGG + Chr1:8703597-8703616 MsG0180000614.01.T01:intron 45.0%
TGTCAAGTTCTTCGTCTCCA+CGG - Chr1:8704642-8704661 None:intergenic 45.0%
TTCAAGCTCTGTCGCTGATA+AGG + Chr1:8703909-8703928 MsG0180000614.01.T01:intron 45.0%
TTGAACCCACACAAAGTGGT+GGG + Chr1:8703355-8703374 MsG0180000614.01.T01:intron 45.0%
! ATCTAGGACCTTGAGTTAGG+GGG + Chr1:8702639-8702658 MsG0180000614.01.T01:intron 45.0%
! CGTATCTAGGACCTTGAGTT+AGG + Chr1:8702636-8702655 MsG0180000614.01.T01:intron 45.0%
! CTCTCTAGCACTCACTCTTT+TGG - Chr1:8703398-8703417 None:intergenic 45.0%
! GGAAAACCGGATGATGATGT+GGG - Chr1:8704403-8704422 None:intergenic 45.0%
! TATGTTCACATGTGTCGGTG+TGG + Chr1:8702930-8702949 MsG0180000614.01.T01:intron 45.0%
! TGGAAAACCGGATGATGATG+TGG - Chr1:8704404-8704423 None:intergenic 45.0%
!! CTTAATCTTTGGTGGTGCAG+TGG + Chr1:8703481-8703500 MsG0180000614.01.T01:intron 45.0%
!! GGATAATTTGCTCCTTGCGT+TGG + Chr1:8704824-8704843 MsG0180000614.01.T01:three_prime_UTR 45.0%
!! TCCATCGTCTTCTGAAGTCA+AGG + Chr1:8704464-8704483 MsG0180000614.01.T01:CDS 45.0%
!! TCCTTGTCTTTGAGGTTTGC+TGG - Chr1:8702029-8702048 None:intergenic 45.0%
!!! AACTGCAGAGGTTTTGGAGT+TGG + Chr1:8704552-8704571 MsG0180000614.01.T01:CDS 45.0%
!!! GAGGTTTGCTGGTGTTTTAC+CGG - Chr1:8702018-8702037 None:intergenic 45.0%
!!! GCAGTGGTAATCCGCTTTTT+TGG + Chr1:8703497-8703516 MsG0180000614.01.T01:intron 45.0%
AACCTGAAGACCAGCTCTTG+AGG - Chr1:8702075-8702094 None:intergenic 50.0%
AAGGCTGCCTGGTAAGTCAA+AGG + Chr1:8704135-8704154 MsG0180000614.01.T01:intron 50.0%
AAGTTTGCCCCCCTAACTCA+AGG - Chr1:8702650-8702669 None:intergenic 50.0%
ACATCTCGTTCCTCAAGAGC+TGG + Chr1:8702062-8702081 MsG0180000614.01.T01:CDS 50.0%
ACATGTGTCATGGCTACAGC+AGG + Chr1:8704179-8704198 MsG0180000614.01.T01:intron 50.0%
AGCTCTTGAGGAACGAGATG+TGG - Chr1:8702063-8702082 None:intergenic 50.0%
ATGGTAGAAGGGATAGAGGG+TGG + Chr1:8703167-8703186 MsG0180000614.01.T01:intron 50.0%
CGGATGGTAGAAGGGATAGA+GGG + Chr1:8703164-8703183 MsG0180000614.01.T01:intron 50.0%
CTCCGGAGTGAAACATGTGT+TGG - Chr1:8702987-8703006 None:intergenic 50.0%
GCGCACAAACACAAAGTCAG+TGG + Chr1:8702613-8702632 MsG0180000614.01.T01:intron 50.0%
GCTCTTGAGGAACGAGATGT+GGG - Chr1:8702062-8702081 None:intergenic 50.0%
GTATGTCCCACCACTTTGTG+TGG - Chr1:8703364-8703383 None:intergenic 50.0%
TCTGTCGCTGATAAGGTGAG+CGG + Chr1:8703916-8703935 MsG0180000614.01.T01:intron 50.0%
TGATGCATGAATGGCTGTGG+CGG + Chr1:8703144-8703163 MsG0180000614.01.T01:intron 50.0%
TGCGAAAACATGTCGGGGAA+AGG + Chr1:8701975-8701994 MsG0180000614.01.T01:exon 50.0%
TGCTGTAGCCATGACACATG+TGG - Chr1:8704180-8704199 None:intergenic 50.0%
TGCTTCAGCCACATGTGTCA+TGG + Chr1:8704169-8704188 MsG0180000614.01.T01:intron 50.0%
! ACCAGGCAGCCTTTTATGTC+AGG - Chr1:8704128-8704147 None:intergenic 50.0%
! TCTAGGACCTTGAGTTAGGG+GGG + Chr1:8702640-8702659 MsG0180000614.01.T01:intron 50.0%
!! CATCTACAGCTTGCTATCCG+TGG + Chr1:8704622-8704641 MsG0180000614.01.T01:CDS 50.0%
!! TTCCTCAAGAGCTGGTCTTC+AGG + Chr1:8702070-8702089 MsG0180000614.01.T01:CDS 50.0%
!!! CCGCTTTTTTGGCTCCTATG+AGG + Chr1:8703508-8703527 MsG0180000614.01.T01:intron 50.0%
AGACGATGGATACGTCCGAC+AGG - Chr1:8704454-8704473 None:intergenic 55.0%
ATGTCGGGGAAAGGAGCGAA+GGG + Chr1:8701984-8702003 MsG0180000614.01.T01:CDS 55.0%
GACGATGGATACGTCCGACA+GGG - Chr1:8704453-8704472 None:intergenic 55.0%
GCCTGACATAAAAGGCTGCC+TGG + Chr1:8704124-8704143 MsG0180000614.01.T01:intron 55.0%
GCGGATGGTAGAAGGGATAG+AGG + Chr1:8703163-8703182 MsG0180000614.01.T01:intron 55.0%
GGAGCGAAGGGTTTGACAAC+CGG + Chr1:8701996-8702015 MsG0180000614.01.T01:CDS 55.0%
GTTGGCTGGCAATGCAAGCA+AGG + Chr1:8704570-8704589 MsG0180000614.01.T01:CDS 55.0%
! ACATGTGTCGGTGTGGTGTC+GGG + Chr1:8702937-8702956 MsG0180000614.01.T01:intron 55.0%
! CACATGTGTCGGTGTGGTGT+CGG + Chr1:8702936-8702955 MsG0180000614.01.T01:intron 55.0%
!!! GCAGAGGTTTTGGAGTTGGC+TGG + Chr1:8704556-8704575 MsG0180000614.01.T01:CDS 55.0%
CATGTCGGGGAAAGGAGCGA+AGG + Chr1:8701983-8702002 MsG0180000614.01.T01:exon 60.0%
GAAGGGATAGAGGGTGGCCA+TGG + Chr1:8703173-8703192 MsG0180000614.01.T01:intron 60.0%
! GCATGAATGGCTGTGGCGGA+TGG + Chr1:8703148-8703167 MsG0180000614.01.T01:intron 60.0%
!! GGCTGTGGCGGATGGTAGAA+GGG + Chr1:8703156-8703175 MsG0180000614.01.T01:intron 60.0%
!! TGGCTGTGGCGGATGGTAGA+AGG + Chr1:8703155-8703174 MsG0180000614.01.T01:intron 60.0%
! TGTCGGTGTGGTGTCGGGCT+TGG + Chr1:8702942-8702961 MsG0180000614.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 8701902 8705044 8701902 ID=MsG0180000614.01;Name=MsG0180000614.01
Chr1 mRNA 8701902 8705044 8701902 ID=MsG0180000614.01.T01;Parent=MsG0180000614.01;Name=MsG0180000614.01.T01;_AED=0.46;_eAED=0.46;_QI=82|1|1|1|1|1|2|300|134
Chr1 exon 8704448 8705044 8704448 ID=MsG0180000614.01.T01:exon:2297;Parent=MsG0180000614.01.T01
Chr1 exon 8701902 8702091 8701902 ID=MsG0180000614.01.T01:exon:2296;Parent=MsG0180000614.01.T01
Chr1 five_prime_UTR 8701902 8701983 8701902 ID=MsG0180000614.01.T01:five_prime_utr;Parent=MsG0180000614.01.T01
Chr1 CDS 8701984 8702091 8701984 ID=MsG0180000614.01.T01:cds;Parent=MsG0180000614.01.T01
Chr1 CDS 8704448 8704744 8704448 ID=MsG0180000614.01.T01:cds;Parent=MsG0180000614.01.T01
Chr1 three_prime_UTR 8704745 8705044 8704745 ID=MsG0180000614.01.T01:three_prime_utr;Parent=MsG0180000614.01.T01
Gene Sequence

>MsG0180000614.01.T01

ATGTCGGGGAAAGGAGCGAAGGGTTTGACAACCGGTAAAACACCAGCAAACCTCAAAGACAAGGACAAGAAGAAACCCACATCTCGTTCCTCAAGAGCTGGTCTTCAGTTCCCTGTCGGACGTATCCATCGTCTTCTGAAGTCAAGGACAATGGCACATGGAAGAGTTGGGGCTACAGCTGCAGTTTATTCTGCCGCTATCCTGGAATATTTAACTGCAGAGGTTTTGGAGTTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGCGTATTACACCGAGACATCTACAGCTTGCTATCCGTGGAGACGAAGAACTTGACACTCTCATCAAAGGAACAATAGCTGGTGGTGGTGTTATTCCTCATATCCACAAGTCTCTTATCAACAAGTCCTCGAAGGAATGA

Protein sequence

>MsG0180000614.01.T01

MSGKGAKGLTTGKTPANLKDKDKKKPTSRSSRAGLQFPVGRIHRLLKSRTMAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE*