AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027039.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027039.01.T01 MTR_4g088775 97.931 145 3 0 20 164 1 145 1.94e-102 291
MsG0580027039.01.T01 MTR_4g088775 97.931 145 3 0 20 164 1 145 2.64e-102 290
MsG0580027039.01.T01 MTR_0227s0030 97.241 145 4 0 20 164 258 402 2.83e-101 297
MsG0580027039.01.T01 MTR_4g073910 93.333 135 5 1 23 157 20 150 2.18e-86 250
MsG0580027039.01.T01 MTR_4g073910 93.846 130 4 1 28 157 1 126 8.26e-83 240
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027039.01.T01 AT4G04190 80.690 145 28 0 20 164 1 145 5.96e-85 248
MsG0580027039.01.T01 AT4G04190 77.174 92 21 0 73 164 4 95 1.25e-46 149
MsG0580027039.01.T01 AT4G04190 73.529 68 18 0 97 164 2 69 2.22e-28 101

Find 42 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCACATGGGAGGCTATTTC+TGG 0.190004 5:-51720971 None:intergenic
TCAAGATAGTGAATTCAAAT+TGG 0.234330 5:+51723202 MsG0580027039.01.T01:CDS
GATTCTTGCTAGTGGAGTTC+AGG 0.278444 5:+51723898 MsG0580027039.01.T01:CDS
AGGTATGGAGGAAACAATTT+TGG 0.283816 5:+51720904 MsG0580027039.01.T01:CDS
GCTATTTCTGGTGGTACTAT+TGG 0.287945 5:-51720959 None:intergenic
CAAGATAGTGAATTCAAATT+GGG 0.391075 5:+51723203 MsG0580027039.01.T01:CDS
TATGGATGATAAACATTACT+TGG 0.412292 5:-51723972 None:intergenic
ATTTCAGTTGATTCGCAGCC+AGG 0.420437 5:+51720884 MsG0580027039.01.T01:CDS
CTCTCCTTGGCTGCATCTAA+AGG 0.430287 5:-51723236 None:intergenic
TGAGGCAGAAGTTACATCAT+TGG 0.440927 5:+51723271 MsG0580027039.01.T01:CDS
ATTCTTGCTAGTGGAGTTCA+GGG 0.446759 5:+51723899 MsG0580027039.01.T01:CDS
ATAGCCTCCCATGTGCTTCA+AGG 0.447424 5:+51720977 MsG0580027039.01.T01:CDS
ATAAACAATGTGCTGAAAGA+AGG 0.448532 5:+51722917 MsG0580027039.01.T01:CDS
GGTTGGTGATGATCTAATGA+TGG 0.465679 5:+51720925 MsG0580027039.01.T01:CDS
AGTTGATTCGCAGCCAGGTA+TGG 0.476882 5:+51720889 MsG0580027039.01.T01:CDS
AGTGGAGTTCAGGGCATTGA+AGG 0.478999 5:+51723908 MsG0580027039.01.T01:CDS
CGCACAAGATGGAGCTTGCA+TGG 0.489197 5:+51723935 MsG0580027039.01.T01:CDS
AAATGCAGGATAAGGAGATA+AGG 0.500799 5:+51723171 MsG0580027039.01.T01:intron
ATCTATGTGATGGAATTCTC+AGG 0.512451 5:+51721005 MsG0580027039.01.T01:CDS
AACATTACTTGGAATCAGTA+AGG 0.517254 5:-51723961 None:intergenic
GCAATCTCGTCTTGACAGAA+TGG 0.518091 5:-51722889 None:intergenic
AAAATTGTTTCCTCCATACC+TGG 0.521815 5:-51720902 None:intergenic
TAAACAATGTGCTGAAAGAA+GGG 0.524342 5:+51722918 MsG0580027039.01.T01:CDS
TTGAAGGTTTCCGCACAAGA+TGG 0.534765 5:+51723924 MsG0580027039.01.T01:CDS
TCTGGTGGTACTATTGGAGA+TGG 0.536418 5:-51720953 None:intergenic
AGGCGCTTGATTCTTGCTAG+TGG 0.550829 5:+51723890 MsG0580027039.01.T01:intron
AAGCTGAGTAGACCTCTCCT+TGG 0.576407 5:-51723249 None:intergenic
GATCAACACCTTGAAGCACA+TGG 0.578714 5:-51720985 None:intergenic
GTTGGTGATGATCTAATGAT+GGG 0.590636 5:+51720926 MsG0580027039.01.T01:CDS
CTTTAGATGCAGCCAAGGAG+AGG 0.605785 5:+51723237 MsG0580027039.01.T01:CDS
GGAGAGGTCTACTCAGCTTG+AGG 0.616954 5:+51723253 MsG0580027039.01.T01:CDS
GGTGGTACTATTGGAGATGG+AGG 0.621226 5:-51720950 None:intergenic
TGATTCGCAGCCAGGTATGG+AGG 0.623014 5:+51720892 MsG0580027039.01.T01:CDS
CATGCAAGCTCCATCTTGTG+CGG 0.626079 5:-51723934 None:intergenic
CAAGGTGTTGATCTATGTGA+TGG 0.631079 5:+51720995 MsG0580027039.01.T01:CDS
AATGCCTTTAGATGCAGCCA+AGG 0.636287 5:+51723232 MsG0580027039.01.T01:CDS
ATCAACACCTTGAAGCACAT+GGG 0.638729 5:-51720984 None:intergenic
AGGATAAGGAGATAAGGAAG+CGG 0.662134 5:+51723177 MsG0580027039.01.T01:intron
ACATGGGAGGCTATTTCTGG+TGG 0.667115 5:-51720968 None:intergenic
CAGAAGTTACATCATTGGAG+AGG 0.672063 5:+51723276 MsG0580027039.01.T01:CDS
AACACCTTGAAGCACATGGG+AGG 0.675268 5:-51720981 None:intergenic
ATTACTTGGAATCAGTAAGG+CGG 0.723469 5:-51723958 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTAGTTAAAAAAAAAAAA+AGG - Chr5:51721524-51721543 None:intergenic 10.0%
!! ATATTAAAAAAACTATCAAA+GGG + Chr5:51723591-51723610 MsG0580027039.01.T01:intron 10.0%
!!! ATTTTATTTATTTATATGTG+TGG + Chr5:51720856-51720875 MsG0580027039.01.T01:CDS 10.0%
!!! TTTTATTTATTTATATGTGT+GGG + Chr5:51720857-51720876 MsG0580027039.01.T01:CDS 10.0%
!! AAGATTGAGATAAAAAATAA+GGG - Chr5:51721059-51721078 None:intergenic 15.0%
!! ATTAATTTCATAATTGTACT+TGG + Chr5:51723656-51723675 MsG0580027039.01.T01:intron 15.0%
!! GATATTAAAAAAACTATCAA+AGG + Chr5:51723590-51723609 MsG0580027039.01.T01:intron 15.0%
!! TGTTGAAATTGTTAATAAAA+AGG - Chr5:51723041-51723060 None:intergenic 15.0%
!! TTTGAAAAAAAAAAAAATGC+AGG + Chr5:51723157-51723176 MsG0580027039.01.T01:intron 15.0%
!!! ATGTTGAAATTTTTTATATC+TGG + Chr5:51723770-51723789 MsG0580027039.01.T01:intron 15.0%
!!! GGATTTTATTTTGAAATTTT+CGG + Chr5:51723802-51723821 MsG0580027039.01.T01:intron 15.0%
!!! TATAACTCCAAATTTTATTT+AGG + Chr5:51721903-51721922 MsG0580027039.01.T01:intron 15.0%
!!! TCTTTTTTTCAAATCAAAAT+GGG + Chr5:51720832-51720851 MsG0580027039.01.T01:CDS 15.0%
!!! TTCTTTTTTTCAAATCAAAA+TGG + Chr5:51720831-51720850 MsG0580027039.01.T01:CDS 15.0%
!!! TTTTGGCTTTATAATTTATT+GGG + Chr5:51722681-51722700 MsG0580027039.01.T01:intron 15.0%
!!! TTTTTGGCTTTATAATTTAT+TGG + Chr5:51722680-51722699 MsG0580027039.01.T01:intron 15.0%
!! AAAAAAAAAAATGCAGGATA+AGG + Chr5:51723163-51723182 MsG0580027039.01.T01:intron 20.0%
!! AAAAATTATAGCACATAATC+TGG + Chr5:51723840-51723859 MsG0580027039.01.T01:intron 20.0%
!! AATGAAACAAAAGAAAATGA+TGG - Chr5:51723131-51723150 None:intergenic 20.0%
!! AATGTTGCCTAAATAAAATT+TGG - Chr5:51721913-51721932 None:intergenic 20.0%
!! GAAGATTGAGATAAAAAATA+AGG - Chr5:51721060-51721079 None:intergenic 20.0%
!! TAAAAATAATGCAATCTGTA+CGG - Chr5:51721097-51721116 None:intergenic 20.0%
!! TAAATTATAAAGCCAAAAAG+TGG - Chr5:51722679-51722698 None:intergenic 20.0%
!!! ATTTTCAAATAATTGCTATG+TGG + Chr5:51723300-51723319 MsG0580027039.01.T01:intron 20.0%
!!! CAAAATTTCTTTAGAATCTT+AGG - Chr5:51723424-51723443 None:intergenic 20.0%
!!! CTAAGATTCTAAAGAAATTT+TGG + Chr5:51723422-51723441 MsG0580027039.01.T01:intron 20.0%
!!! GTTAACAACAAAAATACTTT+TGG + Chr5:51721196-51721215 MsG0580027039.01.T01:intron 20.0%
!!! TTTTAATATCCATCTTCAAA+TGG - Chr5:51723580-51723599 None:intergenic 20.0%
!!! TTTTATATCTGGTTATCATA+AGG + Chr5:51723781-51723800 MsG0580027039.01.T01:intron 20.0%
!!! TTTTTTTTAACTAAGTGACT+CGG + Chr5:51721528-51721547 MsG0580027039.01.T01:intron 20.0%
! AACTTCTAACATTTATCAGT+GGG - Chr5:51722749-51722768 None:intergenic 25.0%
! ATGTAGTCTAGATTTAAACA+TGG + Chr5:51722345-51722364 MsG0580027039.01.T01:intron 25.0%
! CAAGATAGTGAATTCAAATT+GGG + Chr5:51723203-51723222 MsG0580027039.01.T01:CDS 25.0%
! CTTGATAAGAGTTTATAAAG+AGG + Chr5:51722527-51722546 MsG0580027039.01.T01:intron 25.0%
! TCAAGATAGTGAATTCAAAT+TGG + Chr5:51723202-51723221 MsG0580027039.01.T01:CDS 25.0%
! TTAGGAAAAAATCATCTTCA+AGG - Chr5:51723406-51723425 None:intergenic 25.0%
! TTTAAATCTAGACTACATTG+CGG - Chr5:51722343-51722362 None:intergenic 25.0%
!! AAACATGGCATTTTTCATAA+TGG + Chr5:51722360-51722379 MsG0580027039.01.T01:intron 25.0%
!! AAGCTTCATTCATATCTTTT+AGG + Chr5:51722844-51722863 MsG0580027039.01.T01:intron 25.0%
!! ATCCTTTGTTTAAAAAAGGT+AGG + Chr5:51722009-51722028 MsG0580027039.01.T01:intron 25.0%
!! GACACGTTCAATTATAATTT+TGG - Chr5:51723534-51723553 None:intergenic 25.0%
!! GAGAAAAGTATAGAATTAGA+TGG + Chr5:51721473-51721492 MsG0580027039.01.T01:intron 25.0%
!! GGATATCCTTTGTTTAAAAA+AGG + Chr5:51722005-51722024 MsG0580027039.01.T01:intron 25.0%
!! TGTCTATTTTCTCAAAAACT+GGG + Chr5:51722176-51722195 MsG0580027039.01.T01:intron 25.0%
!!! AAAAATGAGTATCCACTTTT+TGG + Chr5:51722664-51722683 MsG0580027039.01.T01:intron 25.0%
!!! ATTAGCTCTACAAAAGATAA+GGG - Chr5:51721827-51721846 None:intergenic 25.0%
!!! ATTTTGAAATTTTCGGTGTA+TGG + Chr5:51723809-51723828 MsG0580027039.01.T01:intron 25.0%
!!! TATTAGCTCTACAAAAGATA+AGG - Chr5:51721828-51721847 None:intergenic 25.0%
AATTAGTGTGAAAGCTAAAG+TGG - Chr5:51723730-51723749 None:intergenic 30.0%
AGGATATCCTAACTAAACAA+AGG - Chr5:51721994-51722013 None:intergenic 30.0%
ATAAACAATGTGCTGAAAGA+AGG + Chr5:51722917-51722936 MsG0580027039.01.T01:CDS 30.0%
ATACTGTACTCAAGAAAGTA+AGG - Chr5:51723617-51723636 None:intergenic 30.0%
ATAGAAACTAGTAACCTAAC+TGG - Chr5:51721886-51721905 None:intergenic 30.0%
ATTACTCACCGTAATATTTG+AGG + Chr5:51723067-51723086 MsG0580027039.01.T01:intron 30.0%
ATTGTACTTGGATTTCCTTA+CGG + Chr5:51723668-51723687 MsG0580027039.01.T01:intron 30.0%
CAACTTCTAACATTTATCAG+TGG - Chr5:51722750-51722769 None:intergenic 30.0%
CGAATTTAATCAACTGTACT+CGG - Chr5:51722121-51722140 None:intergenic 30.0%
GCTATTCATTTCAAATGTAC+AGG + Chr5:51723870-51723889 MsG0580027039.01.T01:intron 30.0%
GGATATCCTAACTAAACAAA+GGG - Chr5:51721993-51722012 None:intergenic 30.0%
TAAACAATGTGCTGAAAGAA+GGG + Chr5:51722918-51722937 MsG0580027039.01.T01:CDS 30.0%
TAACAAATCCGAGTATAAAG+AGG - Chr5:51721180-51721199 None:intergenic 30.0%
TAATATCCATCTTCAAATGG+TGG - Chr5:51723577-51723596 None:intergenic 30.0%
TCTCAAAAACTGGGATAAAT+AGG + Chr5:51722185-51722204 MsG0580027039.01.T01:intron 30.0%
TTCTGATTCCTCTTTATACT+CGG + Chr5:51721169-51721188 MsG0580027039.01.T01:intron 30.0%
! AGGTATTTCTAAGTTAGTTG+AGG + Chr5:51721736-51721755 MsG0580027039.01.T01:intron 30.0%
! CTGTCTATTTTCTCAAAAAC+TGG + Chr5:51722175-51722194 MsG0580027039.01.T01:intron 30.0%
! CTTTTGTAGAGCTAATAAGA+GGG + Chr5:51721831-51721850 MsG0580027039.01.T01:intron 30.0%
! CTTTTTGTGTAGGTTTAGAA+TGG + Chr5:51721304-51721323 MsG0580027039.01.T01:intron 30.0%
! TCTTTTGTAGAGCTAATAAG+AGG + Chr5:51721830-51721849 MsG0580027039.01.T01:intron 30.0%
! TTTTGTAGAGCTAATAAGAG+GGG + Chr5:51721832-51721851 MsG0580027039.01.T01:intron 30.0%
AAAATTGTTTCCTCCATACC+TGG - Chr5:51720905-51720924 None:intergenic 35.0%
AAATGCAGGATAAGGAGATA+AGG + Chr5:51723171-51723190 MsG0580027039.01.T01:intron 35.0%
ACATGTTGTTAAGCTTTGCT+GGG + Chr5:51722232-51722251 MsG0580027039.01.T01:intron 35.0%
ACGGTCTTCAATATTTCGAT+TGG + Chr5:51723687-51723706 MsG0580027039.01.T01:intron 35.0%
ACTTTGTGTGATTGAAGAAG+TGG + Chr5:51722619-51722638 MsG0580027039.01.T01:intron 35.0%
AGAATTAGATGGCACGTTAA+GGG + Chr5:51721484-51721503 MsG0580027039.01.T01:intron 35.0%
ATTGTGAAAAACTCTGTCTG+AGG - Chr5:51722292-51722311 None:intergenic 35.0%
CACACTAATTATTTGACGCA+CGG + Chr5:51723740-51723759 MsG0580027039.01.T01:intron 35.0%
CGCATGAACTGTTGAAATTT+GGG - Chr5:51722599-51722618 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG - Chr5:51722574-51722593 None:intergenic 35.0%
CTAAGCAAAGAAACATTCTC+TGG - Chr5:51723345-51723364 None:intergenic 35.0%
CTCTTGATTCTGTCAATAAC+AGG - Chr5:51722056-51722075 None:intergenic 35.0%
CTTGTCTTAGTAGAAGACAT+TGG + Chr5:51721602-51721621 MsG0580027039.01.T01:intron 35.0%
GAAGTAGTCAAAGAAAGAGA+GGG - Chr5:51723005-51723024 None:intergenic 35.0%
GAGTATAAAGAGGAATCAGA+AGG - Chr5:51721170-51721189 None:intergenic 35.0%
GCATGAACTGTTGAAATTTG+GGG - Chr5:51722598-51722617 None:intergenic 35.0%
GTTTAAAAAAGGTAGGCCTA+AGG + Chr5:51722016-51722035 MsG0580027039.01.T01:intron 35.0%
TAGAATTAGATGGCACGTTA+AGG + Chr5:51721483-51721502 MsG0580027039.01.T01:intron 35.0%
TCGAAATATTGAAGACCGTA+AGG - Chr5:51723686-51723705 None:intergenic 35.0%
TCGCATGAACTGTTGAAATT+TGG - Chr5:51722600-51722619 None:intergenic 35.0%
TGAAGTAGTCAAAGAAAGAG+AGG - Chr5:51723006-51723025 None:intergenic 35.0%
TGAGATGTCTGCAATGAAAA+AGG + Chr5:51721568-51721587 MsG0580027039.01.T01:intron 35.0%
TGTCCCTACCTCAAATATTA+CGG - Chr5:51723078-51723097 None:intergenic 35.0%
TTGGAAGAAGAATATGCTGT+CGG - Chr5:51723515-51723534 None:intergenic 35.0%
! AGAGATTAAGGTATTAAGCC+TGG + Chr5:51722718-51722737 MsG0580027039.01.T01:intron 35.0%
! AGGTATGGAGGAAACAATTT+TGG + Chr5:51720904-51720923 MsG0580027039.01.T01:CDS 35.0%
! AGTCTTCCCTTTGTTTAGTT+AGG + Chr5:51721984-51722003 MsG0580027039.01.T01:intron 35.0%
! ATCTATGTGATGGAATTCTC+AGG + Chr5:51721005-51721024 MsG0580027039.01.T01:CDS 35.0%
! CTGTAATGAGCTTTTTGTGT+AGG + Chr5:51721294-51721313 MsG0580027039.01.T01:intron 35.0%
! TCACCGTAATATTTGAGGTA+GGG + Chr5:51723072-51723091 MsG0580027039.01.T01:intron 35.0%
! TCAGACAGAGTTTTTCACAA+TGG + Chr5:51722291-51722310 MsG0580027039.01.T01:intron 35.0%
!! ATAAGGGTGTCATCTGAATA+TGG - Chr5:51721811-51721830 None:intergenic 35.0%
!! ATGGAGGAAACAATTTTGGT+TGG + Chr5:51720908-51720927 MsG0580027039.01.T01:CDS 35.0%
!! GTTGGTGATGATCTAATGAT+GGG + Chr5:51720926-51720945 MsG0580027039.01.T01:CDS 35.0%
!!! GGCCTACCTTTTTTAAACAA+AGG - Chr5:51722014-51722033 None:intergenic 35.0%
AATTAGATGGCACGTTAAGG+GGG + Chr5:51721486-51721505 MsG0580027039.01.T01:intron 40.0%
ACAGAAAAGTGAAGGGACAA+AGG - Chr5:51721692-51721711 None:intergenic 40.0%
AGGATAAGGAGATAAGGAAG+CGG + Chr5:51723177-51723196 MsG0580027039.01.T01:intron 40.0%
ATCAACACCTTGAAGCACAT+GGG - Chr5:51720987-51721006 None:intergenic 40.0%
ATTCTTGCTAGTGGAGTTCA+GGG + Chr5:51723899-51723918 MsG0580027039.01.T01:CDS 40.0%
ATTTCTCCGAACAGGTTTGT+GGG + Chr5:51721930-51721949 MsG0580027039.01.T01:intron 40.0%
CAACCAGACAGAAAAGTGAA+GGG - Chr5:51721699-51721718 None:intergenic 40.0%
CAGAAAAGTGAAGGGACAAA+GGG - Chr5:51721691-51721710 None:intergenic 40.0%
CAGAAGTTACATCATTGGAG+AGG + Chr5:51723276-51723295 MsG0580027039.01.T01:CDS 40.0%
CTTTGCTTAGCATAACCTGA+GGG + Chr5:51723355-51723374 MsG0580027039.01.T01:intron 40.0%
GAATTAGATGGCACGTTAAG+GGG + Chr5:51721485-51721504 MsG0580027039.01.T01:intron 40.0%
GACAGAATCAAGAGTAAGCT+CGG + Chr5:51722062-51722081 MsG0580027039.01.T01:intron 40.0%
GACATGTTGTTAAGCTTTGC+TGG + Chr5:51722231-51722250 MsG0580027039.01.T01:intron 40.0%
GTATGAGCTTACATCCAGTT+AGG + Chr5:51721869-51721888 MsG0580027039.01.T01:intron 40.0%
TCAACCAGACAGAAAAGTGA+AGG - Chr5:51721700-51721719 None:intergenic 40.0%
TCCTCTTGAAAAGAAAGAGC+CGG - Chr5:51721346-51721365 None:intergenic 40.0%
TCTTTGCTTAGCATAACCTG+AGG + Chr5:51723354-51723373 MsG0580027039.01.T01:intron 40.0%
TGACAAGAGTGGAGAGATTA+AGG + Chr5:51722706-51722725 MsG0580027039.01.T01:intron 40.0%
TGAGGCAGAAGTTACATCAT+TGG + Chr5:51723271-51723290 MsG0580027039.01.T01:CDS 40.0%
TGGAATTTCCAACAACCACA+GGG - Chr5:51722389-51722408 None:intergenic 40.0%
TTGAGGAAGTTCAAAGCAAG+AGG + Chr5:51721716-51721735 MsG0580027039.01.T01:intron 40.0%
TTTATTGGGTCTGACAAGAG+TGG + Chr5:51722695-51722714 MsG0580027039.01.T01:intron 40.0%
! AGCTATGATAATGAACCACG+GGG - Chr5:51722320-51722339 None:intergenic 40.0%
! CTCACCGTAATATTTGAGGT+AGG + Chr5:51723071-51723090 MsG0580027039.01.T01:intron 40.0%
! GAGCTATGATAATGAACCAC+GGG - Chr5:51722321-51722340 None:intergenic 40.0%
! GGAGCTATGATAATGAACCA+CGG - Chr5:51722322-51722341 None:intergenic 40.0%
!! ATTTATCAGTGGGTTGAACC+AGG - Chr5:51722739-51722758 None:intergenic 40.0%
!! CAAGGTGTTGATCTATGTGA+TGG + Chr5:51720995-51721014 MsG0580027039.01.T01:CDS 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG + Chr5:51722572-51722591 MsG0580027039.01.T01:intron 40.0%
!! GCTATTTCTGGTGGTACTAT+TGG - Chr5:51720962-51720981 None:intergenic 40.0%
!! GGTTGGTGATGATCTAATGA+TGG + Chr5:51720925-51720944 MsG0580027039.01.T01:CDS 40.0%
!! TTCACTTTTCTGTCTGGTTG+AGG + Chr5:51721699-51721718 MsG0580027039.01.T01:intron 40.0%
!! TTGTGTTGGCTTGTCTTTGA+GGG + Chr5:51722470-51722489 MsG0580027039.01.T01:intron 40.0%
AAGCCAACACAAGGCAACTA+GGG - Chr5:51722462-51722481 None:intergenic 45.0%
AATGCCTTTAGATGCAGCCA+AGG + Chr5:51723232-51723251 MsG0580027039.01.T01:CDS 45.0%
AGTAAGCTCGGTTCATGGAA+GGG + Chr5:51722074-51722093 MsG0580027039.01.T01:intron 45.0%
CATTTCTCCGAACAGGTTTG+TGG + Chr5:51721929-51721948 MsG0580027039.01.T01:intron 45.0%
CGAATGCCACCATTTGAAGA+TGG + Chr5:51723568-51723587 MsG0580027039.01.T01:intron 45.0%
CTCAAAGACAAGCCAACACA+AGG - Chr5:51722471-51722490 None:intergenic 45.0%
CTCCAAGACATTCCATCAGA+GGG - Chr5:51721772-51721791 None:intergenic 45.0%
GATCAACACCTTGAAGCACA+TGG - Chr5:51720988-51721007 None:intergenic 45.0%
GATTCTTGCTAGTGGAGTTC+AGG + Chr5:51723898-51723917 MsG0580027039.01.T01:CDS 45.0%
GCAATACCCACAAACCTGTT+CGG - Chr5:51721939-51721958 None:intergenic 45.0%
GCAATCTCGTCTTGACAGAA+TGG - Chr5:51722892-51722911 None:intergenic 45.0%
GGAATTTCCAACAACCACAG+GGG - Chr5:51722388-51722407 None:intergenic 45.0%
GGGCAGATCGCAATTAAAGT+GGG - Chr5:51722441-51722460 None:intergenic 45.0%
GTAGTCAAAGAAAGAGAGGG+AGG - Chr5:51723002-51723021 None:intergenic 45.0%
GTGAAAAACTCTGTCTGAGG+AGG - Chr5:51722289-51722308 None:intergenic 45.0%
GTGGAATTTCCAACAACCAC+AGG - Chr5:51722390-51722409 None:intergenic 45.0%
TAGGCAACATTTCTCCGAAC+AGG + Chr5:51721922-51721941 MsG0580027039.01.T01:intron 45.0%
TCAAGAGTAAGCTCGGTTCA+TGG + Chr5:51722069-51722088 MsG0580027039.01.T01:intron 45.0%
TCTGGTGGTACTATTGGAGA+TGG - Chr5:51720956-51720975 None:intergenic 45.0%
TTGAAGGTTTCCGCACAAGA+TGG + Chr5:51723924-51723943 MsG0580027039.01.T01:CDS 45.0%
! AGTTAGCTTCATGTTCCCTC+AGG - Chr5:51723373-51723392 None:intergenic 45.0%
! CAAGATGAAATCGACTCTCG+TGG + Chr5:51721268-51721287 MsG0580027039.01.T01:intron 45.0%
! GCTATGATAATGAACCACGG+GGG - Chr5:51722319-51722338 None:intergenic 45.0%
! GGTGTCATCTGAATATGGCT+AGG - Chr5:51721806-51721825 None:intergenic 45.0%
! TTTTCATAATGGCACCCCTG+TGG + Chr5:51722371-51722390 MsG0580027039.01.T01:intron 45.0%
!! ATTTCAGTTGATTCGCAGCC+AGG + Chr5:51720884-51720903 MsG0580027039.01.T01:CDS 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG - Chr5:51722565-51722584 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG + Chr5:51722562-51722581 MsG0580027039.01.T01:intron 45.0%
!! CTTGTGTTGGCTTGTCTTTG+AGG + Chr5:51722469-51722488 MsG0580027039.01.T01:intron 45.0%
!! TAGTCCCACATGGGTTAGAT+AGG + Chr5:51722501-51722520 MsG0580027039.01.T01:intron 45.0%
!! TGTCCCTTCACTTTTCTGTC+TGG + Chr5:51721693-51721712 MsG0580027039.01.T01:intron 45.0%
!! TGTGTTGGCTTGTCTTTGAG+GGG + Chr5:51722471-51722490 MsG0580027039.01.T01:intron 45.0%
AAAACTCTGTCTGAGGAGGC+AGG - Chr5:51722285-51722304 None:intergenic 50.0%
AAAGAAAGAGAGGGAGGAGG+AGG - Chr5:51722996-51723015 None:intergenic 50.0%
AACACCTTGAAGCACATGGG+AGG - Chr5:51720984-51721003 None:intergenic 50.0%
AAGCTGAGTAGACCTCTCCT+TGG - Chr5:51723252-51723271 None:intergenic 50.0%
ACACTCCTCACCTTACAAGC+CGG + Chr5:51722552-51722571 MsG0580027039.01.T01:intron 50.0%
AGCCAACACAAGGCAACTAG+GGG - Chr5:51722461-51722480 None:intergenic 50.0%
AGCGTCCTATCTAACCCATG+TGG - Chr5:51722509-51722528 None:intergenic 50.0%
AGGCGCTTGATTCTTGCTAG+TGG + Chr5:51723890-51723909 MsG0580027039.01.T01:intron 50.0%
ATAGCCTCCCATGTGCTTCA+AGG + Chr5:51720977-51720996 MsG0580027039.01.T01:CDS 50.0%
CAAGCCAACACAAGGCAACT+AGG - Chr5:51722463-51722482 None:intergenic 50.0%
CATGCAAGCTCCATCTTGTG+CGG - Chr5:51723937-51723956 None:intergenic 50.0%
CCTCCAAGACATTCCATCAG+AGG - Chr5:51721773-51721792 None:intergenic 50.0%
CCTCTGATGGAATGTCTTGG+AGG + Chr5:51721770-51721789 MsG0580027039.01.T01:intron 50.0%
CTCCCTCTGATGGAATGTCT+TGG + Chr5:51721767-51721786 MsG0580027039.01.T01:intron 50.0%
CTCTCCTTGGCTGCATCTAA+AGG - Chr5:51723239-51723258 None:intergenic 50.0%
CTTTAGATGCAGCCAAGGAG+AGG + Chr5:51723237-51723256 MsG0580027039.01.T01:CDS 50.0%
GAGTAAGCTCGGTTCATGGA+AGG + Chr5:51722073-51722092 MsG0580027039.01.T01:intron 50.0%
GCGTCCTATCTAACCCATGT+GGG - Chr5:51722508-51722527 None:intergenic 50.0%
GGATGTTCATCTCCCTCTGA+TGG + Chr5:51721757-51721776 MsG0580027039.01.T01:intron 50.0%
GGGGCAGATCGCAATTAAAG+TGG - Chr5:51722442-51722461 None:intergenic 50.0%
GGTGGTACTATTGGAGATGG+AGG - Chr5:51720953-51720972 None:intergenic 50.0%
GTCAAAGAAAGAGAGGGAGG+AGG - Chr5:51722999-51723018 None:intergenic 50.0%
TGGCCAATTACAACTGCTGC+CGG + Chr5:51721324-51721343 MsG0580027039.01.T01:intron 50.0%
! AGCACATGGGAGGCTATTTC+TGG - Chr5:51720974-51720993 None:intergenic 50.0%
! GCAGGAACACTTGTTGGTTG+AGG - Chr5:51722267-51722286 None:intergenic 50.0%
! GGGTGGATTTAGTCCCACAT+GGG + Chr5:51722492-51722511 MsG0580027039.01.T01:intron 50.0%
! TACTGTAGAGTCGACTCTCG+TGG + Chr5:51721367-51721386 MsG0580027039.01.T01:intron 50.0%
!! ACATGGGAGGCTATTTCTGG+TGG - Chr5:51720971-51720990 None:intergenic 50.0%
!! AGTGGAGTTCAGGGCATTGA+AGG + Chr5:51723908-51723927 MsG0580027039.01.T01:CDS 50.0%
!! AGTTGATTCGCAGCCAGGTA+TGG + Chr5:51720889-51720908 MsG0580027039.01.T01:CDS 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG - Chr5:51722560-51722579 None:intergenic 50.0%
!! GCCGGCTCTTTCTTTTCAAG+AGG + Chr5:51721342-51721361 MsG0580027039.01.T01:intron 50.0%
!! GTGTTGGCTTGTCTTTGAGG+GGG + Chr5:51722472-51722491 MsG0580027039.01.T01:intron 50.0%
AAATTCCACCCCGAGCGTGA+GGG + Chr5:51722401-51722420 MsG0580027039.01.T01:intron 55.0%
AATGGCACCCCTGTGGTTGT+TGG + Chr5:51722378-51722397 MsG0580027039.01.T01:intron 55.0%
CGCACAAGATGGAGCTTGCA+TGG + Chr5:51723935-51723954 MsG0580027039.01.T01:CDS 55.0%
GAGCCGGCAGCAGTTGTAAT+TGG - Chr5:51721330-51721349 None:intergenic 55.0%
GAGGAGGCAGGAACACTTGT+TGG - Chr5:51722273-51722292 None:intergenic 55.0%
GGAGAGGTCTACTCAGCTTG+AGG + Chr5:51723253-51723272 MsG0580027039.01.T01:CDS 55.0%
GGCAGAAGACACACTGCCTT+AGG - Chr5:51722035-51722054 None:intergenic 55.0%
GGGTTCCATGCTGTCCATCA+CGG + Chr5:51722094-51722113 MsG0580027039.01.T01:intron 55.0%
GGTTCCATGCTGTCCATCAC+GGG + Chr5:51722095-51722114 MsG0580027039.01.T01:intron 55.0%
TGATTCGCAGCCAGGTATGG+AGG + Chr5:51720892-51720911 MsG0580027039.01.T01:CDS 55.0%
TGCCCCTAGTTGCCTTGTGT+TGG + Chr5:51722456-51722475 MsG0580027039.01.T01:intron 55.0%
! GGGGTGGATTTAGTCCCACA+TGG + Chr5:51722491-51722510 MsG0580027039.01.T01:intron 55.0%
! TTTTCACAATGGCACCCCCG+TGG + Chr5:51722302-51722321 MsG0580027039.01.T01:intron 55.0%
!! TTGGCTTGTCTTTGAGGGGG+TGG + Chr5:51722475-51722494 MsG0580027039.01.T01:intron 55.0%
AACACATCCCCTCACGCTCG+GGG - Chr5:51722412-51722431 None:intergenic 60.0%
AATTCCACCCCGAGCGTGAG+GGG + Chr5:51722402-51722421 MsG0580027039.01.T01:intron 60.0%
CAACACATCCCCTCACGCTC+GGG - Chr5:51722413-51722432 None:intergenic 60.0%
CAACTGTACTCGGCCCGTGA+TGG - Chr5:51722111-51722130 None:intergenic 60.0%
CCAACACATCCCCTCACGCT+CGG - Chr5:51722414-51722433 None:intergenic 60.0%
GAAATTCCACCCCGAGCGTG+AGG + Chr5:51722400-51722419 MsG0580027039.01.T01:intron 60.0%
GGGACAAAGGGTCACTGTGC+TGG - Chr5:51721679-51721698 None:intergenic 60.0%
CCGAGCGTGAGGGGATGTGT+TGG + Chr5:51722411-51722430 MsG0580027039.01.T01:intron 65.0%
!! TCGGCCCGTGATGGACAGCA+TGG - Chr5:51722102-51722121 None:intergenic 65.0%
ACATCCCCTCACGCTCGGGG+TGG - Chr5:51722409-51722428 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 51720827 51723979 51720827 ID=MsG0580027039.01;Name=MsG0580027039.01
Chr5 mRNA 51720827 51723979 51720827 ID=MsG0580027039.01.T01;Parent=MsG0580027039.01;Name=MsG0580027039.01.T01;_AED=0.49;_eAED=0.55;_QI=0|1|0.5|1|1|1|4|0|164
Chr5 exon 51720827 51721040 51720827 ID=MsG0580027039.01.T01:exon:17008;Parent=MsG0580027039.01.T01
Chr5 exon 51722866 51722939 51722866 ID=MsG0580027039.01.T01:exon:17009;Parent=MsG0580027039.01.T01
Chr5 exon 51723179 51723297 51723179 ID=MsG0580027039.01.T01:exon:17010;Parent=MsG0580027039.01.T01
Chr5 exon 51723892 51723979 51723892 ID=MsG0580027039.01.T01:exon:17011;Parent=MsG0580027039.01.T01
Chr5 CDS 51720827 51721040 51720827 ID=MsG0580027039.01.T01:cds;Parent=MsG0580027039.01.T01
Chr5 CDS 51722866 51722939 51722866 ID=MsG0580027039.01.T01:cds;Parent=MsG0580027039.01.T01
Chr5 CDS 51723179 51723297 51723179 ID=MsG0580027039.01.T01:cds;Parent=MsG0580027039.01.T01
Chr5 CDS 51723892 51723979 51723892 ID=MsG0580027039.01.T01:cds;Parent=MsG0580027039.01.T01
Gene Sequence

>MsG0580027039.01.T01

CTGATTCTTTTTTTCAAATCAAAATGGGAATTTTATTTATTTATATGTGTGGGTTTCATTTCAGTTGATTCGCAGCCAGGTATGGAGGAAACAATTTTGGTTGGTGATGATCTAATGATGGGTCCTCCATCTCCAATAGTACCACCAGAAATAGCCTCCCATGTGCTTCAAGGTGTTGATCTATGTGATGGAATTCTCAGGAATCTATTTTTGTGCTTGCAAATCAACGACATTGAACCATTCTGTCAAGACGAGATTGCTCTATATAAACAATGTGCTGAAAGAAGGGATAAGGAGATAAGGAAGCGGCTTCAAGATAGTGAATTCAAATTGGGTTCGTCAATGCCTTTAGATGCAGCCAAGGAGAGGTCTACTCAGCTTGAGGCAGAAGTTACATCATTGGAGAGGCGCTTGATTCTTGCTAGTGGAGTTCAGGGCATTGAAGGTTTCCGCACAAGATGGAGCTTGCATGGCCGCCTTACTGATTCCAAGTAA
Protein sequence

>MsG0580027039.01.T01

LILFFKSKWEFYLFICVGFISVDSQPGMEETILVGDDLMMGPPSPIVPPEIASHVLQGVDLCDGILRNLFLCLQINDIEPFCQDEIALYKQCAERRDKEIRKRLQDSEFKLGSSMPLDAAKERSTQLEAEVTSLERRLILASGVQGIEGFRTRWSLHGRLTDSK*