AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039258.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039258.01.T01 MTR_7g069070 96.657 329 10 1 1 328 1 329 0.0 653
MsG0780039258.01.T01 MTR_8g090295 38.308 201 117 2 125 323 71 266 2.24e-47 161
MsG0780039258.01.T01 MTR_8g090295 35.714 126 74 2 125 248 71 191 2.98e-23 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039258.01.T01 AT3G08950 59.697 330 121 3 11 328 5 334 6.84e-131 377
MsG0780039258.01.T01 AT4G39740 43.312 157 89 0 167 323 115 271 1.14e-43 151

Find 80 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGGACATTGATGTATTT+TGG 0.139865 7:+60865040 MsG0780039258.01.T01:CDS
TAGATTGAGAAGCAAGTTTA+TGG 0.154943 7:+60863489 MsG0780039258.01.T01:intron
TCAAACAGTGATTCTGATTC+TGG 0.240238 7:+60863609 MsG0780039258.01.T01:CDS
AGTTCCTCGGGACAGATATC+TGG 0.248240 7:-60865076 None:intergenic
GAGATATTGTCATTGAATTT+AGG 0.255902 7:+60867024 MsG0780039258.01.T01:three_prime_UTR
CCAAAGTTGATTGGATTAAC+TGG 0.296210 7:+60865946 MsG0780039258.01.T01:CDS
AATCTCCAAAATTATCTAAA+AGG 0.303425 7:-60867099 None:intergenic
CGAGCATGTTACTTATTATA+CGG 0.311040 7:-60866968 None:intergenic
ACTTGCTGATGGAGTAATTA+AGG 0.318558 7:+60866937 MsG0780039258.01.T01:CDS
ATAAGGACTTCATGGGTAAA+TGG 0.323446 7:+60865023 MsG0780039258.01.T01:CDS
AATTCTTTCCAGATACTTGA+TGG 0.323856 7:+60866862 MsG0780039258.01.T01:intron
CTATCAGACGGTGGTTTATT+CGG 0.331931 7:-60863579 None:intergenic
AGAAGAGAGGAAGTGGGTTT+GGG 0.332337 7:-60863290 None:intergenic
AAGAAGAGAGGAAGTGGGTT+TGG 0.336158 7:-60863291 None:intergenic
TAAAATGACATACATGACTA+TGG 0.350804 7:-60866061 None:intergenic
AGAAGCAAGTTTATGGTAAT+GGG 0.356500 7:+60863496 MsG0780039258.01.T01:CDS
CTGCGGGAAAAGCTGCGATT+GGG 0.363194 7:+60864957 MsG0780039258.01.T01:CDS
GTAGCGGAAGAGGTTGGTTT+TGG 0.370329 7:-60863231 None:intergenic
GTCATTGAATTTAGGCTTTG+TGG 0.376294 7:+60867032 MsG0780039258.01.T01:three_prime_UTR
TGGGTTTGGGATTGCGAAGA+AGG 0.378633 7:-60863277 None:intergenic
GAATTTCATCCAAAGTTGAT+TGG 0.378707 7:+60865937 MsG0780039258.01.T01:intron
TAACATGCTCGCCTTGCTAT+TGG 0.385843 7:+60866980 MsG0780039258.01.T01:exon
GAGAAGCAAGTTTATGGTAA+TGG 0.410270 7:+60863495 MsG0780039258.01.T01:CDS
CTCCTTACAGAGGAGAAATC+TGG 0.412185 7:+60865742 MsG0780039258.01.T01:intron
TGTAACTGATAAGGACTTCA+TGG 0.424704 7:+60865015 MsG0780039258.01.T01:CDS
CCAGTTAATCCAATCAACTT+TGG 0.424864 7:-60865946 None:intergenic
TGATGATTCGTAAGCTCAAA+TGG 0.436005 7:-60864983 None:intergenic
AGCGAGAAGCGTAGCGGAAG+AGG 0.436565 7:-60863241 None:intergenic
TGGTGAAAGAAGAGAGGAAG+TGG 0.447234 7:-60863297 None:intergenic
TAATTGACGTCATTGTTCAA+TGG 0.462850 7:+60867158 MsG0780039258.01.T01:three_prime_UTR
TGTTTCAGAGGTAGTTAAGC+AGG 0.465407 7:+60864928 MsG0780039258.01.T01:CDS
TCTGCGGGAAAAGCTGCGAT+TGG 0.466176 7:+60864956 MsG0780039258.01.T01:CDS
AGTGATTCTGATTCTGGTAA+AGG 0.468239 7:+60863615 MsG0780039258.01.T01:CDS
ACAAAGCTCAACCAAGCAAC+CGG 0.468889 7:-60863987 None:intergenic
CCAAGTCTAAAATAATTTGA+AGG 0.469623 7:+60867070 MsG0780039258.01.T01:three_prime_UTR
CAGACGGTGGTTTATTCGGT+GGG 0.472687 7:-60863575 None:intergenic
TACTAACTTCTGTAGTTCCT+CGG 0.474104 7:-60865089 None:intergenic
GAAAAGAAACGACATATAGA+AGG 0.474838 7:+60864056 MsG0780039258.01.T01:CDS
TCTGGTAAAGGAAAAGAGTC+TGG 0.482957 7:+60863627 MsG0780039258.01.T01:CDS
TCTTTCACACCAACCTCGCC+AGG 0.487138 7:+60863334 MsG0780039258.01.T01:CDS
AACTTCACAAATCCCATGTC+AGG 0.490485 7:-60866887 None:intergenic
CGGGAAACGTGTAACTGATA+AGG 0.502114 7:+60865006 MsG0780039258.01.T01:CDS
GAGAATGAACCTGGCGAGGT+TGG 0.505718 7:-60863343 None:intergenic
TGCGGGAAAAGCTGCGATTG+GGG 0.507996 7:+60864958 MsG0780039258.01.T01:CDS
ATACTTGATGGCACCTGACA+TGG 0.521774 7:+60866874 MsG0780039258.01.T01:CDS
GTGTGTTGCAGCCGGTTGCT+TGG 0.531202 7:+60863976 MsG0780039258.01.T01:intron
TGTTCAACAGTATCCCTCTC+AGG 0.533850 7:-60865799 None:intergenic
GTTAAGCAGGGACCTTCTGC+GGG 0.534373 7:+60864941 MsG0780039258.01.T01:CDS
TTATCTCTGTTGATCCTGAG+AGG 0.545683 7:+60865785 MsG0780039258.01.T01:CDS
GTTCCTCGGGACAGATATCT+GGG 0.552780 7:-60865075 None:intergenic
ACTAACTTCTGTAGTTCCTC+GGG 0.554513 7:-60865088 None:intergenic
GAGTGATGGTGAAAGAAGAG+AGG 0.554818 7:-60863303 None:intergenic
AGAAGCGTAGCGGAAGAGGT+TGG 0.556250 7:-60863237 None:intergenic
GGTGAAAGAAGAGAGGAAGT+GGG 0.558612 7:-60863296 None:intergenic
TATCTCTGTTGATCCTGAGA+GGG 0.559192 7:+60865786 MsG0780039258.01.T01:CDS
GGTCGTTGATGCTGCATCAG+AGG 0.573749 7:+60863517 MsG0780039258.01.T01:CDS
AGTTAAGCAGGGACCTTCTG+CGG 0.574559 7:+60864940 MsG0780039258.01.T01:CDS
GATGTTGACTCACTTGCTGA+TGG 0.579983 7:+60866926 MsG0780039258.01.T01:CDS
TCAGACGGTGGTTTATTCGG+TGG 0.582076 7:-60863576 None:intergenic
CCTTCATTTCATCAAACACA+TGG 0.590970 7:+60863193 None:intergenic
GAAGACAGCAGAGGAAGACT+CGG 0.592685 7:+60866020 MsG0780039258.01.T01:CDS
TTTGATGAATTACTATCAGA+CGG 0.595613 7:-60863591 None:intergenic
TTGAGCTTACGAATCATCAC+GGG 0.601003 7:+60864987 MsG0780039258.01.T01:CDS
AGACGGTGGTTTATTCGGTG+GGG 0.604822 7:-60863574 None:intergenic
GTAACTGATAAGGACTTCAT+GGG 0.605698 7:+60865016 MsG0780039258.01.T01:CDS
AAGAAGTACTACCAATAGCA+AGG 0.609770 7:-60866991 None:intergenic
GCGGGAAAAGCTGCGATTGG+GGG 0.610060 7:+60864959 MsG0780039258.01.T01:CDS
GTTTCAGAGGTAGTTAAGCA+GGG 0.611915 7:+60864929 MsG0780039258.01.T01:CDS
TTTGAGCTTACGAATCATCA+CGG 0.614612 7:+60864986 MsG0780039258.01.T01:CDS
TACTTGATGGCACCTGACAT+GGG 0.617481 7:+60866875 MsG0780039258.01.T01:CDS
AGAGAGAGCGAGAAGCGTAG+CGG 0.620758 7:-60863247 None:intergenic
AGAAGAGAATGAACCTGGCG+AGG 0.623470 7:-60863347 None:intergenic
GAAAGATGACGATAGAGTGA+TGG 0.637253 7:-60863317 None:intergenic
AGATATACAAAATGTTTCAG+AGG 0.642439 7:+60864916 MsG0780039258.01.T01:intron
GAGGGATACTGTTGAACAAG+TGG 0.649326 7:+60865804 MsG0780039258.01.T01:CDS
TTATTATATGAAGACAGCAG+AGG 0.675812 7:+60866011 MsG0780039258.01.T01:CDS
CTGCCCAGATATCTGTCCCG+AGG 0.677827 7:+60865072 MsG0780039258.01.T01:CDS
CAAGTGGCTGAATATGTCAA+AGG 0.681667 7:+60865820 MsG0780039258.01.T01:CDS
GATGAATTACTATCAGACGG+TGG 0.700809 7:-60863588 None:intergenic
ATTGGTATATTACTATGACA+AGG 0.715806 7:+60864034 MsG0780039258.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATATATATTATACTATT+TGG + Chr7:60866091-60866110 MsG0780039258.01.T01:intron 10.0%
!! AAAACAATTTATAGCTAATA+TGG - Chr7:60865500-60865519 None:intergenic 15.0%
!! ATTGTACTTAAAAAAAGATT+AGG + Chr7:60867186-60867205 MsG0780039258.01.T01:three_prime_UTR 15.0%
!! TAGTATAATATATATGAAGT+AGG - Chr7:60866089-60866108 None:intergenic 15.0%
!! TTATTTAAAAATACAAGTAG+AGG - Chr7:60864471-60864490 None:intergenic 15.0%
!! TTGTACTTAAAAAAAGATTA+GGG + Chr7:60867187-60867206 MsG0780039258.01.T01:three_prime_UTR 15.0%
!! TTTATTCTTACATTTCAATT+GGG + Chr7:60863424-60863443 MsG0780039258.01.T01:intron 15.0%
!!! AATAAGATGGATATATTTTT+AGG - Chr7:60866695-60866714 None:intergenic 15.0%
!!! TAATATGATTTTTATGAGTT+CGG + Chr7:60863911-60863930 MsG0780039258.01.T01:intron 15.0%
!!! TAATTCCTTTTAGATAATTT+TGG + Chr7:60867094-60867113 MsG0780039258.01.T01:three_prime_UTR 15.0%
!!! TTATGATATCTAATCTTTTT+TGG + Chr7:60864353-60864372 MsG0780039258.01.T01:intron 15.0%
!!! TTTTATTCTTACATTTCAAT+TGG + Chr7:60863423-60863442 MsG0780039258.01.T01:intron 15.0%
!! AAATTATATGTAACTGACAT+AGG + Chr7:60866797-60866816 MsG0780039258.01.T01:intron 20.0%
!! AATCTCCAAAATTATCTAAA+AGG - Chr7:60867102-60867121 None:intergenic 20.0%
!! AATTACAATGTGAAAAAAAC+TGG - Chr7:60866305-60866324 None:intergenic 20.0%
!! AATTATATGTAACTGACATA+GGG + Chr7:60866798-60866817 MsG0780039258.01.T01:intron 20.0%
!! AGTAATTCGTCAAAAATATA+AGG + Chr7:60864698-60864717 MsG0780039258.01.T01:intron 20.0%
!! GAATAAAACAATGAAATTAG+AGG - Chr7:60863411-60863430 None:intergenic 20.0%
!! TAATATATAAGTATCCTTGT+AGG + Chr7:60866598-60866617 MsG0780039258.01.T01:intron 20.0%
!! TCCATTAATTGAAAAATCAA+TGG - Chr7:60866227-60866246 None:intergenic 20.0%
!! TGACTTATTTAAGCTTATAT+TGG - Chr7:60865604-60865623 None:intergenic 20.0%
!! TGATTGAATTTCAAATAGTT+TGG + Chr7:60864320-60864339 MsG0780039258.01.T01:intron 20.0%
!! TTTGCATTTAATTGTTAAAC+TGG + Chr7:60864543-60864562 MsG0780039258.01.T01:intron 20.0%
!!! ATGTTAATTGTATGTCTTTT+TGG + Chr7:60864156-60864175 MsG0780039258.01.T01:intron 20.0%
!!! ATTTTTAGGAATAGAAGTTT+AGG - Chr7:60866681-60866700 None:intergenic 20.0%
!!! CAATTTTCTCAGATTATTTT+TGG + Chr7:60863802-60863821 MsG0780039258.01.T01:intron 20.0%
!!! GAGATTTGACATTTTTAATA+GGG + Chr7:60867116-60867135 MsG0780039258.01.T01:three_prime_UTR 20.0%
!!! GGAATTTATTTTAGATGAAA+AGG - Chr7:60866262-60866281 None:intergenic 20.0%
!!! TGTTAATTGTATGTCTTTTT+GGG + Chr7:60864157-60864176 MsG0780039258.01.T01:intron 20.0%
!!! TTTGTTTTTCTGATTTTAAC+TGG + Chr7:60864005-60864024 MsG0780039258.01.T01:CDS 20.0%
!!! TTTTTAGGAATAGAAGTTTA+GGG - Chr7:60866680-60866699 None:intergenic 20.0%
! ACATACAATTAACATAGACA+TGG - Chr7:60864151-60864170 None:intergenic 25.0%
! AGATATACAAAATGTTTCAG+AGG + Chr7:60864916-60864935 MsG0780039258.01.T01:intron 25.0%
! AGGAAAAAATGAGATAGTAT+AGG + Chr7:60866128-60866147 MsG0780039258.01.T01:intron 25.0%
! ATATAGAAGGTAGATTACTA+TGG + Chr7:60864069-60864088 MsG0780039258.01.T01:intron 25.0%
! ATTGGTATATTACTATGACA+AGG + Chr7:60864034-60864053 MsG0780039258.01.T01:CDS 25.0%
! CTTCAAAGTTATGAATAAGA+TGG - Chr7:60866708-60866727 None:intergenic 25.0%
! GAATACAAAATTACTTGATC+TGG - Chr7:60864599-60864618 None:intergenic 25.0%
! GAGATATTGTCATTGAATTT+AGG + Chr7:60867024-60867043 MsG0780039258.01.T01:three_prime_UTR 25.0%
! TAAAATGACATACATGACTA+TGG - Chr7:60866064-60866083 None:intergenic 25.0%
! TAAGAAAATAATAAAGGGAC+AGG - Chr7:60864666-60864685 None:intergenic 25.0%
! TATAAACACTGCAAATTCAA+TGG + Chr7:60864573-60864592 MsG0780039258.01.T01:intron 25.0%
! TGAAATTAGAGGTAAAAAAG+TGG - Chr7:60863400-60863419 None:intergenic 25.0%
! TTAAATAAGTCAATCCAAAC+AGG + Chr7:60865612-60865631 MsG0780039258.01.T01:intron 25.0%
! TTGAAATATATCCATGCAAA+GGG + Chr7:60866404-60866423 MsG0780039258.01.T01:intron 25.0%
! TTGTTCACTGTATTATTGTT+TGG + Chr7:60864186-60864205 MsG0780039258.01.T01:intron 25.0%
! TTTGATGAATTACTATCAGA+CGG - Chr7:60863594-60863613 None:intergenic 25.0%
!! AAATGGACATTGATGTATTT+TGG + Chr7:60865040-60865059 MsG0780039258.01.T01:CDS 25.0%
!! CCAAGTCTAAAATAATTTGA+AGG + Chr7:60867070-60867089 MsG0780039258.01.T01:three_prime_UTR 25.0%
!! GATTTTATAGAATCTTAGCA+GGG + Chr7:60864735-60864754 MsG0780039258.01.T01:intron 25.0%
!! GGAGATTTGACATTTTTAAT+AGG + Chr7:60867115-60867134 MsG0780039258.01.T01:three_prime_UTR 25.0%
!! GGTTTTTATGATCAAATTGA+AGG - Chr7:60863379-60863398 None:intergenic 25.0%
!! TAGCTATAAATTGTTTTCAC+AGG + Chr7:60865503-60865522 MsG0780039258.01.T01:intron 25.0%
!! TGATTTTATAGAATCTTAGC+AGG + Chr7:60864734-60864753 MsG0780039258.01.T01:intron 25.0%
!! TTTGAAATATATCCATGCAA+AGG + Chr7:60866403-60866422 MsG0780039258.01.T01:intron 25.0%
!!! AATCTTTTTTGGTGTAAACT+GGG + Chr7:60864364-60864383 MsG0780039258.01.T01:intron 25.0%
!!! ACACTTTTTATATCTCATGT+TGG + Chr7:60865867-60865886 MsG0780039258.01.T01:intron 25.0%
!!! ACTAGTGTTTTAGATCTTAA+TGG + Chr7:60865661-60865680 MsG0780039258.01.T01:intron 25.0%
!!! CCTTCAAATTATTTTAGACT+TGG - Chr7:60867073-60867092 None:intergenic 25.0%
!!! GCCATTGATTTTTCAATTAA+TGG + Chr7:60866223-60866242 MsG0780039258.01.T01:intron 25.0%
!!! TAATCTTTTTTGGTGTAAAC+TGG + Chr7:60864363-60864382 MsG0780039258.01.T01:intron 25.0%
!!! TTATTTTAGATGAAAAGGTG+AGG - Chr7:60866257-60866276 None:intergenic 25.0%
!!! TTTTAGGAATAGAAGTTTAG+GGG - Chr7:60866679-60866698 None:intergenic 25.0%
AAAAAAGAAGAGAATGAACC+TGG - Chr7:60863355-60863374 None:intergenic 30.0%
AATAAGTAAGTGTTTGTTCG+TGG + Chr7:60865126-60865145 MsG0780039258.01.T01:intron 30.0%
AATTCTTTCCAGATACTTGA+TGG + Chr7:60866862-60866881 MsG0780039258.01.T01:intron 30.0%
AGAAGCAAGTTTATGGTAAT+GGG + Chr7:60863496-60863515 MsG0780039258.01.T01:CDS 30.0%
CGGTGTTTGATATCTAATAA+CGG + Chr7:60864444-60864463 MsG0780039258.01.T01:intron 30.0%
GAAAAGAAACGACATATAGA+AGG + Chr7:60864056-60864075 MsG0780039258.01.T01:CDS 30.0%
GAAATTCAATCAGCATTATC+AGG - Chr7:60864312-60864331 None:intergenic 30.0%
GAGTTTATAGACATGTCATA+AGG + Chr7:60865536-60865555 MsG0780039258.01.T01:intron 30.0%
TAATTGACGTCATTGTTCAA+TGG + Chr7:60867158-60867177 MsG0780039258.01.T01:three_prime_UTR 30.0%
TAGATTGAGAAGCAAGTTTA+TGG + Chr7:60863489-60863508 MsG0780039258.01.T01:intron 30.0%
TCAAATTCATAGACAGAAAC+TGG - Chr7:60866342-60866361 None:intergenic 30.0%
TTATTATATGAAGACAGCAG+AGG + Chr7:60866011-60866030 MsG0780039258.01.T01:CDS 30.0%
TTTCACATTGTAATTGCTCT+TGG + Chr7:60866310-60866329 MsG0780039258.01.T01:intron 30.0%
TTTGGACATTCAATGAATCT+AGG + Chr7:60864204-60864223 MsG0780039258.01.T01:intron 30.0%
! ATGGGATTTGTGAAGTTTTT+CGG + Chr7:60866893-60866912 MsG0780039258.01.T01:CDS 30.0%
! CACATTTCTCACATTTGTTA+AGG + Chr7:60866535-60866554 MsG0780039258.01.T01:intron 30.0%
! CGAGCATGTTACTTATTATA+CGG - Chr7:60866971-60866990 None:intergenic 30.0%
! GAATTTCATCCAAAGTTGAT+TGG + Chr7:60865937-60865956 MsG0780039258.01.T01:intron 30.0%
!! CAACACTTTTTATCTCATCT+GGG - Chr7:60865975-60865994 None:intergenic 30.0%
!! GGAATGAGGTTATTTGTTTT+TGG + Chr7:60863949-60863968 MsG0780039258.01.T01:intron 30.0%
!! GTTGTTTCTTAGTGATATCA+TGG + Chr7:60864855-60864874 MsG0780039258.01.T01:intron 30.0%
!!! ATTTGGCTTTCACTTTTAAC+AGG + Chr7:60866108-60866127 MsG0780039258.01.T01:intron 30.0%
!!! GTTTTTCTGATTTTAACTGG+AGG + Chr7:60864008-60864027 MsG0780039258.01.T01:CDS 30.0%
AAAAACCAATTGACACGTCA+TGG - Chr7:60864521-60864540 None:intergenic 35.0%
AATTAATCCCCATCATGTCA+AGG + Chr7:60866446-60866465 MsG0780039258.01.T01:intron 35.0%
ACCACCAAGAAACAAAGATT+TGG - Chr7:60864812-60864831 None:intergenic 35.0%
AGTGATTCTGATTCTGGTAA+AGG + Chr7:60863615-60863634 MsG0780039258.01.T01:CDS 35.0%
ATAAGGACTTCATGGGTAAA+TGG + Chr7:60865023-60865042 MsG0780039258.01.T01:CDS 35.0%
ATTAATCCCCATCATGTCAA+GGG + Chr7:60866447-60866466 MsG0780039258.01.T01:intron 35.0%
ATTCACAAGAGATACATGTG+TGG + Chr7:60865260-60865279 MsG0780039258.01.T01:intron 35.0%
CACATGTTTCAGTATCATGT+CGG - Chr7:60863765-60863784 None:intergenic 35.0%
CCAGTTAATCCAATCAACTT+TGG - Chr7:60865949-60865968 None:intergenic 35.0%
GAGAAGCAAGTTTATGGTAA+TGG + Chr7:60863495-60863514 MsG0780039258.01.T01:CDS 35.0%
GATTACCAAAAATCTCTTCG+CGG + Chr7:60863672-60863691 MsG0780039258.01.T01:CDS 35.0%
GATTTAACTACTCTAGATCG+AGG - Chr7:60866283-60866302 None:intergenic 35.0%
GGATCAACAGAGATAAAAAC+TGG - Chr7:60865781-60865800 None:intergenic 35.0%
GTAACTGATAAGGACTTCAT+GGG + Chr7:60865016-60865035 MsG0780039258.01.T01:CDS 35.0%
GTCATTGAATTTAGGCTTTG+TGG + Chr7:60867032-60867051 MsG0780039258.01.T01:three_prime_UTR 35.0%
GTGGATAAGATATATGCATG+TGG + Chr7:60864111-60864130 MsG0780039258.01.T01:intron 35.0%
TAATAAAGGGACAGGATCAT+AGG - Chr7:60864658-60864677 None:intergenic 35.0%
TACTAACTTCTGTAGTTCCT+CGG - Chr7:60865092-60865111 None:intergenic 35.0%
TCAAACAGTGATTCTGATTC+TGG + Chr7:60863609-60863628 MsG0780039258.01.T01:CDS 35.0%
TGATGATTCGTAAGCTCAAA+TGG - Chr7:60864986-60865005 None:intergenic 35.0%
TGTAACTGATAAGGACTTCA+TGG + Chr7:60865015-60865034 MsG0780039258.01.T01:CDS 35.0%
TTCACAAGAGATACATGTGT+GGG + Chr7:60865261-60865280 MsG0780039258.01.T01:intron 35.0%
TTTGAGCTTACGAATCATCA+CGG + Chr7:60864986-60865005 MsG0780039258.01.T01:CDS 35.0%
! ACTTGCTGATGGAGTAATTA+AGG + Chr7:60866937-60866956 MsG0780039258.01.T01:CDS 35.0%
! ATTGTTTTCACAGGCTATCA+TGG + Chr7:60865512-60865531 MsG0780039258.01.T01:intron 35.0%
! CATGCCAAATCTTTGTTTCT+TGG + Chr7:60864805-60864824 MsG0780039258.01.T01:intron 35.0%
! CCAAAGTTGATTGGATTAAC+TGG + Chr7:60865946-60865965 MsG0780039258.01.T01:CDS 35.0%
! CTCACATTTGTTAAGGACTT+GGG + Chr7:60866542-60866561 MsG0780039258.01.T01:intron 35.0%
! TCTCACATTTGTTAAGGACT+TGG + Chr7:60866541-60866560 MsG0780039258.01.T01:intron 35.0%
! TGAGTTAGTTGAGTGTTTTG+TGG + Chr7:60864092-60864111 MsG0780039258.01.T01:intron 35.0%
!! AAGAAGTACTACCAATAGCA+AGG - Chr7:60866994-60867013 None:intergenic 35.0%
!! ACACTGACACTTTTGATTGA+AGG + Chr7:60863734-60863753 MsG0780039258.01.T01:intron 35.0%
!! ATTAGTCTTTGCAGTTGTAG+CGG - Chr7:60864396-60864415 None:intergenic 35.0%
!! GAAAGAGAATCAGTTGATAG+AGG - Chr7:60866751-60866770 None:intergenic 35.0%
!! GCAACACTTTTTATCTCATC+TGG - Chr7:60865976-60865995 None:intergenic 35.0%
!! TTTGAGTTGTACTTGGAATG+AGG + Chr7:60863935-60863954 MsG0780039258.01.T01:intron 35.0%
!!! TTTCTGATTTTAACTGGAGG+TGG + Chr7:60864011-60864030 MsG0780039258.01.T01:CDS 35.0%
AAATTGAGTCACAGCTCACA+GGG - Chr7:60866655-60866674 None:intergenic 40.0%
AACTTCACAAATCCCATGTC+AGG - Chr7:60866890-60866909 None:intergenic 40.0%
ACTAACTTCTGTAGTTCCTC+GGG - Chr7:60865091-60865110 None:intergenic 40.0%
ATATCAAACACCGCCCATTT+GGG - Chr7:60864437-60864456 None:intergenic 40.0%
ATGCATTCCCTTGACATGAT+GGG - Chr7:60866457-60866476 None:intergenic 40.0%
CAAGTGGCTGAATATGTCAA+AGG + Chr7:60865820-60865839 MsG0780039258.01.T01:CDS 40.0%
CACTAGTATGCTTTCTCATG+TGG - Chr7:60865648-60865667 None:intergenic 40.0%
CTATCAGACGGTGGTTTATT+CGG - Chr7:60863582-60863601 None:intergenic 40.0%
GAAAGATGACGATAGAGTGA+TGG - Chr7:60863320-60863339 None:intergenic 40.0%
GATGAATTACTATCAGACGG+TGG - Chr7:60863591-60863610 None:intergenic 40.0%
GCTTTCTCATGTGGTCTTTA+AGG - Chr7:60865639-60865658 None:intergenic 40.0%
GGGTTAGATGGCAATAATGA+TGG + Chr7:60865288-60865307 MsG0780039258.01.T01:intron 40.0%
GTTTCAGAGGTAGTTAAGCA+GGG + Chr7:60864929-60864948 MsG0780039258.01.T01:CDS 40.0%
TAACACCACTGAGACTGTTT+GGG - Chr7:60865578-60865597 None:intergenic 40.0%
TAATGCCATGACGTGTCAAT+TGG + Chr7:60864513-60864532 MsG0780039258.01.T01:intron 40.0%
TACAAAGCTTACCCTTTGCA+TGG - Chr7:60866418-60866437 None:intergenic 40.0%
TATCTCTGTTGATCCTGAGA+GGG + Chr7:60865786-60865805 MsG0780039258.01.T01:CDS 40.0%
TATGCATTCCCTTGACATGA+TGG - Chr7:60866458-60866477 None:intergenic 40.0%
TCTGGTAAAGGAAAAGAGTC+TGG + Chr7:60863627-60863646 MsG0780039258.01.T01:CDS 40.0%
TGAAGCTTCAAGTGCTTTGT+TGG + Chr7:60865314-60865333 MsG0780039258.01.T01:intron 40.0%
TGCATGAGTTGTCAGAACTT+AGG + Chr7:60865387-60865406 MsG0780039258.01.T01:intron 40.0%
TGTCTTACGTCAGCATATGT+TGG + Chr7:60866490-60866509 MsG0780039258.01.T01:intron 40.0%
TGTTTCAGAGGTAGTTAAGC+AGG + Chr7:60864928-60864947 MsG0780039258.01.T01:CDS 40.0%
TTAACACCACTGAGACTGTT+TGG - Chr7:60865579-60865598 None:intergenic 40.0%
TTATCTCTGTTGATCCTGAG+AGG + Chr7:60865785-60865804 MsG0780039258.01.T01:CDS 40.0%
TTCCAGATTTCTCCTCTGTA+AGG - Chr7:60865747-60865766 None:intergenic 40.0%
TTGAGCTTACGAATCATCAC+GGG + Chr7:60864987-60865006 MsG0780039258.01.T01:CDS 40.0%
! ACTAATCCCTTGAGCTTTGT+GGG + Chr7:60864410-60864429 MsG0780039258.01.T01:intron 40.0%
! CAGGGTCAATTCTTGTTTGA+GGG + Chr7:60864753-60864772 MsG0780039258.01.T01:intron 40.0%
! CGGTGTGTATCTGAAACTAT+TGG + Chr7:60863697-60863716 MsG0780039258.01.T01:intron 40.0%
! CTCATGTTGGTTATTTGCTG+CGG + Chr7:60865880-60865899 MsG0780039258.01.T01:intron 40.0%
! GCCAAATCTTTGTTTCTTGG+TGG + Chr7:60864808-60864827 MsG0780039258.01.T01:intron 40.0%
! TCTCTTTTGTCTCCTTACAG+AGG + Chr7:60865732-60865751 MsG0780039258.01.T01:intron 40.0%
! TGAGTTGAATTCCTACCAAC+TGG - Chr7:60866517-60866536 None:intergenic 40.0%
!! GAGATAGTATAGGTGTTGAC+TGG + Chr7:60866138-60866157 MsG0780039258.01.T01:intron 40.0%
!! GTTCGGATTTGAGTTGTACT+TGG + Chr7:60863928-60863947 MsG0780039258.01.T01:intron 40.0%
!!! GATTTTAACTGGAGGTGGAT+TGG + Chr7:60864016-60864035 MsG0780039258.01.T01:CDS 40.0%
!!! GTTGGTTTTGGTGGATATCA+TGG - Chr7:60863222-60863241 None:intergenic 40.0%
AAGAGATACATGTGTGGGCT+TGG + Chr7:60865266-60865285 MsG0780039258.01.T01:intron 45.0%
ACAAAGCTCAACCAAGCAAC+CGG - Chr7:60863990-60864009 None:intergenic 45.0%
AGACTGTTTGGGAGAGCTTA+TGG - Chr7:60865567-60865586 None:intergenic 45.0%
AGAGATACATGTGTGGGCTT+GGG + Chr7:60865267-60865286 MsG0780039258.01.T01:intron 45.0%
AGGCTCAGAAAACACCTACA+AGG - Chr7:60866615-60866634 None:intergenic 45.0%
CAAATTGAGTCACAGCTCAC+AGG - Chr7:60866656-60866675 None:intergenic 45.0%
CATATGTTGGTCCAGTTGGT+AGG + Chr7:60866503-60866522 MsG0780039258.01.T01:intron 45.0%
CCAAAAATCTCTTCGCGGAT+CGG + Chr7:60863677-60863696 MsG0780039258.01.T01:CDS 45.0%
CGGGAAACGTGTAACTGATA+AGG + Chr7:60865006-60865025 MsG0780039258.01.T01:CDS 45.0%
CTCCTTACAGAGGAGAAATC+TGG + Chr7:60865742-60865761 MsG0780039258.01.T01:intron 45.0%
GACTAATCCCTTGAGCTTTG+TGG + Chr7:60864409-60864428 MsG0780039258.01.T01:intron 45.0%
GAGGGATACTGTTGAACAAG+TGG + Chr7:60865804-60865823 MsG0780039258.01.T01:CDS 45.0%
GATATCAAACACCGCCCATT+TGG - Chr7:60864438-60864457 None:intergenic 45.0%
GGTGAAAGAAGAGAGGAAGT+GGG - Chr7:60863299-60863318 None:intergenic 45.0%
TCAGCATATGTTGGTCCAGT+TGG + Chr7:60866499-60866518 MsG0780039258.01.T01:intron 45.0%
TGCATTCCCTTGACATGATG+GGG - Chr7:60866456-60866475 None:intergenic 45.0%
TGGGTTTCAATCTCCTTGTG+AGG + Chr7:60866561-60866580 MsG0780039258.01.T01:intron 45.0%
TGGTGAAAGAAGAGAGGAAG+TGG - Chr7:60863300-60863319 None:intergenic 45.0%
TGTTCAACAGTATCCCTCTC+AGG - Chr7:60865802-60865821 None:intergenic 45.0%
TTGGTATTGTGTGTTGCAGC+CGG + Chr7:60863968-60863987 MsG0780039258.01.T01:intron 45.0%
! AAGAAGAGAGGAAGTGGGTT+TGG - Chr7:60863294-60863313 None:intergenic 45.0%
! AGAAGAGAGGAAGTGGGTTT+GGG - Chr7:60863293-60863312 None:intergenic 45.0%
! ATACTTGATGGCACCTGACA+TGG + Chr7:60866874-60866893 MsG0780039258.01.T01:CDS 45.0%
! GAGTGATGGTGAAAGAAGAG+AGG - Chr7:60863306-60863325 None:intergenic 45.0%
! GCAGGGTCAATTCTTGTTTG+AGG + Chr7:60864752-60864771 MsG0780039258.01.T01:intron 45.0%
! GTCAGAACTTAGGCACTGTT+TGG + Chr7:60865397-60865416 MsG0780039258.01.T01:intron 45.0%
! GTGGTCTTTAAGGACCTGTT+TGG - Chr7:60865629-60865648 None:intergenic 45.0%
! TAACATGCTCGCCTTGCTAT+TGG + Chr7:60866980-60866999 MsG0780039258.01.T01:exon 45.0%
! TACTTGATGGCACCTGACAT+GGG + Chr7:60866875-60866894 MsG0780039258.01.T01:CDS 45.0%
! TAGGTGTTTTCTGAGCCTTG+AGG + Chr7:60866617-60866636 MsG0780039258.01.T01:intron 45.0%
!! GATGTTGACTCACTTGCTGA+TGG + Chr7:60866926-60866945 MsG0780039258.01.T01:CDS 45.0%
!! ATAATATAAGAAAATAATAA+AGG - Chr7:60864672-60864691 None:intergenic 5.0%
!! TAATATAAGAAAATAATAAA+GGG - Chr7:60864671-60864690 None:intergenic 5.0%
AGAAGAGAATGAACCTGGCG+AGG - Chr7:60863350-60863369 None:intergenic 50.0%
AGTCTTTGCAGTTGTAGCGG+AGG - Chr7:60864393-60864412 None:intergenic 50.0%
AGTTAAGCAGGGACCTTCTG+CGG + Chr7:60864940-60864959 MsG0780039258.01.T01:CDS 50.0%
AGTTCCTCGGGACAGATATC+TGG - Chr7:60865079-60865098 None:intergenic 50.0%
CAGACGGTGGTTTATTCGGT+GGG - Chr7:60863578-60863597 None:intergenic 50.0%
GAAGACAGCAGAGGAAGACT+CGG + Chr7:60866020-60866039 MsG0780039258.01.T01:CDS 50.0%
GAGATACATGTGTGGGCTTG+GGG + Chr7:60865268-60865287 MsG0780039258.01.T01:intron 50.0%
GTTCCTCGGGACAGATATCT+GGG - Chr7:60865078-60865097 None:intergenic 50.0%
TCACAGCTCACAGGGCTATA+GGG - Chr7:60866647-60866666 None:intergenic 50.0%
TCAGACGGTGGTTTATTCGG+TGG - Chr7:60863579-60863598 None:intergenic 50.0%
TCTCCTTGTGAGGAACTCGT+TGG + Chr7:60866571-60866590 MsG0780039258.01.T01:intron 50.0%
TTGGGTCCCACAAAGCTCAA+GGG - Chr7:60864419-60864438 None:intergenic 50.0%
TTTGGGTCCCACAAAGCTCA+AGG - Chr7:60864420-60864439 None:intergenic 50.0%
! AGACGGTGGTTTATTCGGTG+GGG - Chr7:60863577-60863596 None:intergenic 50.0%
! CCGATCCGCGAAGAGATTTT+TGG - Chr7:60863680-60863699 None:intergenic 50.0%
! GAGCTTTGTGGGACCCAAAT+GGG + Chr7:60864421-60864440 MsG0780039258.01.T01:intron 50.0%
! GTCAGGTGCCATCAAGTATC+TGG - Chr7:60866873-60866892 None:intergenic 50.0%
! TGAGCTTTGTGGGACCCAAA+TGG + Chr7:60864420-60864439 MsG0780039258.01.T01:intron 50.0%
! TGGGTTTGGGATTGCGAAGA+AGG - Chr7:60863280-60863299 None:intergenic 50.0%
!!! GTAGCGGAAGAGGTTGGTTT+TGG - Chr7:60863234-60863253 None:intergenic 50.0%
CACAGCTCACAGGGCTATAG+GGG - Chr7:60866646-60866665 None:intergenic 55.0%
CTGCCAACGAGTTCCTCACA+AGG - Chr7:60866577-60866596 None:intergenic 55.0%
CTGCGGGAAAAGCTGCGATT+GGG + Chr7:60864957-60864976 MsG0780039258.01.T01:CDS 55.0%
CTTTGTGGGACCCAAATGGG+CGG + Chr7:60864424-60864443 MsG0780039258.01.T01:intron 55.0%
GAGAATGAACCTGGCGAGGT+TGG - Chr7:60863346-60863365 None:intergenic 55.0%
GCTCTCCCAAACAGTCTCAG+TGG + Chr7:60865570-60865589 MsG0780039258.01.T01:intron 55.0%
GGTCGTTGATGCTGCATCAG+AGG + Chr7:60863517-60863536 MsG0780039258.01.T01:CDS 55.0%
GTCACAGCTCACAGGGCTAT+AGG - Chr7:60866648-60866667 None:intergenic 55.0%
GTTAAGCAGGGACCTTCTGC+GGG + Chr7:60864941-60864960 MsG0780039258.01.T01:CDS 55.0%
TCTGCGGGAAAAGCTGCGAT+TGG + Chr7:60864956-60864975 MsG0780039258.01.T01:CDS 55.0%
TCTTTCACACCAACCTCGCC+AGG + Chr7:60863334-60863353 MsG0780039258.01.T01:CDS 55.0%
TGCGGGAAAAGCTGCGATTG+GGG + Chr7:60864958-60864977 MsG0780039258.01.T01:CDS 55.0%
TGTGTGGGCTTGGGGTTAGA+TGG + Chr7:60865276-60865295 MsG0780039258.01.T01:intron 55.0%
! AGAAGCGTAGCGGAAGAGGT+TGG - Chr7:60863240-60863259 None:intergenic 55.0%
! AGAGAGAGCGAGAAGCGTAG+CGG - Chr7:60863250-60863269 None:intergenic 55.0%
! ATCGCAGCTTTTCCCGCAGA+AGG - Chr7:60864956-60864975 None:intergenic 55.0%
!!! GCGGAAGAGGTTGGTTTTGG+TGG - Chr7:60863231-60863250 None:intergenic 55.0%
CTGCCCAGATATCTGTCCCG+AGG + Chr7:60865072-60865091 MsG0780039258.01.T01:CDS 60.0%
GCGGGAAAAGCTGCGATTGG+GGG + Chr7:60864959-60864978 MsG0780039258.01.T01:CDS 60.0%
GGGCTATAGGGGAAGCCTCA+AGG - Chr7:60866635-60866654 None:intergenic 60.0%
GTGTGTTGCAGCCGGTTGCT+TGG + Chr7:60863976-60863995 MsG0780039258.01.T01:intron 60.0%
! AGCGAGAAGCGTAGCGGAAG+AGG - Chr7:60863244-60863263 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 60863203 60867267 60863203 ID=MsG0780039258.01;Name=MsG0780039258.01
Chr7 mRNA 60863203 60867267 60863203 ID=MsG0780039258.01.T01;Parent=MsG0780039258.01;Name=MsG0780039258.01.T01;_AED=0.35;_eAED=0.35;_QI=9|1|1|1|1|1|7|285|328
Chr7 exon 60863203 60863355 60863203 ID=MsG0780039258.01.T01:exon:8551;Parent=MsG0780039258.01.T01
Chr7 exon 60863492 60863698 60863492 ID=MsG0780039258.01.T01:exon:8552;Parent=MsG0780039258.01.T01
Chr7 exon 60863987 60864077 60863987 ID=MsG0780039258.01.T01:exon:8553;Parent=MsG0780039258.01.T01
Chr7 exon 60864918 60865130 60864918 ID=MsG0780039258.01.T01:exon:8554;Parent=MsG0780039258.01.T01
Chr7 exon 60865752 60865841 60865752 ID=MsG0780039258.01.T01:exon:8555;Parent=MsG0780039258.01.T01
Chr7 exon 60865938 60866070 60865938 ID=MsG0780039258.01.T01:exon:8556;Parent=MsG0780039258.01.T01
Chr7 exon 60866874 60867267 60866874 ID=MsG0780039258.01.T01:exon:8557;Parent=MsG0780039258.01.T01
Chr7 five_prime_UTR 60863203 60863211 60863203 ID=MsG0780039258.01.T01:five_prime_utr;Parent=MsG0780039258.01.T01
Chr7 CDS 60863212 60863355 60863212 ID=MsG0780039258.01.T01:cds;Parent=MsG0780039258.01.T01
Chr7 CDS 60863492 60863698 60863492 ID=MsG0780039258.01.T01:cds;Parent=MsG0780039258.01.T01
Chr7 CDS 60863987 60864077 60863987 ID=MsG0780039258.01.T01:cds;Parent=MsG0780039258.01.T01
Chr7 CDS 60864918 60865130 60864918 ID=MsG0780039258.01.T01:cds;Parent=MsG0780039258.01.T01
Chr7 CDS 60865752 60865841 60865752 ID=MsG0780039258.01.T01:cds;Parent=MsG0780039258.01.T01
Chr7 CDS 60865938 60866070 60865938 ID=MsG0780039258.01.T01:cds;Parent=MsG0780039258.01.T01
Chr7 CDS 60866874 60866982 60866874 ID=MsG0780039258.01.T01:cds;Parent=MsG0780039258.01.T01
Chr7 three_prime_UTR 60866983 60867267 60866983 ID=MsG0780039258.01.T01:three_prime_utr;Parent=MsG0780039258.01.T01
Gene Sequence

>MsG0780039258.01.T01

ATGGCGTCCATGATATCCACCAAAACCAACCTCTTCCGCTACGCTTCTCGCTCTCTCTTCTTTCACCTTCTTCGCAATCCCAAACCCACTTCCTCTCTTCTTTCACCATCACTCTATCGTCATCTTTCACACCAACCTCGCCAGATTGAGAAGCAAGTTTATGGTAATGGGTCGTTGATGCTGCATCAGAGGTTTCTATCTAGTACTGATAATCATGATAAATCATCCCCACCGAATAAACCACCGTCTGATAGTAATTCATCAAACAGTGATTCTGATTCTGGTAAAGGAAAAGAGTCTGGTGATGAGCAGAAACAGAAAAGTGATTACCAAAAATCTCTTCGCGGATCGCCGGTTGCTTGGTTGAGCTTTGTTTTTCTGATTTTAACTGGAGGTGGATTGGTATATTACTATGACAAGGAAAAGAAACGACATATAGAAGATATACAAAATGTTTCAGAGGTAGTTAAGCAGGGACCTTCTGCGGGAAAAGCTGCGATTGGGGGTCCATTTGAGCTTACGAATCATCACGGGAAACGTGTAACTGATAAGGACTTCATGGGTAAATGGACATTGATGTATTTTGGATTTACTCACTGCCCAGATATCTGTCCCGAGGAACTACAGAAGTTAGTAGCTGCAGTTGATAAAATAAAGGAGAAATCTGGAATTGAAACTGTGCCAGTTTTTATCTCTGTTGATCCTGAGAGGGATACTGTTGAACAAGTGGCTGAATATGTCAAAGAATTTCATCCAAAGTTGATTGGATTAACTGGTAGCCCAGATGAGATAAAAAGTGTTGCACGTGCGTATCGTGTTTATTATATGAAGACAGCAGAGGAAGACTCGGATTATCTTGTTGATCATTCCATAGTCATATACTTGATGGCACCTGACATGGGATTTGTGAAGTTTTTCGGCAAGAACAACGATGTTGACTCACTTGCTGATGGAGTAATTAAGGAGATAAAGCCGTATAATAAGTAA

Protein sequence

>MsG0780039258.01.T01

MASMISTKTNLFRYASRSLFFHLLRNPKPTSSLLSPSLYRHLSHQPRQIEKQVYGNGSLMLHQRFLSSTDNHDKSSPPNKPPSDSNSSNSDSDSGKGKESGDEQKQKSDYQKSLRGSPVAWLSFVFLILTGGGLVYYYDKEKKRHIEDIQNVSEVVKQGPSAGKAAIGGPFELTNHHGKRVTDKDFMGKWTLMYFGFTHCPDICPEELQKLVAAVDKIKEKSGIETVPVFISVDPERDTVEQVAEYVKEFHPKLIGLTGSPDEIKSVARAYRVYYMKTAEEDSDYLVDHSIVIYLMAPDMGFVKFFGKNNDVDSLADGVIKEIKPYNK*