AlfalfaGEDB | MsG0580028613.01

M. sativa cultivar ZhongmuNo.1 / MsG0580028613.01

KEGG: -
GO: GO:0005515
PFAM: PF00179 PF13855

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028613.01.T01	XP_003612135.2	94.03	134	8	0	107	240	240	373	3.49E-72	249

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028613.01.T01	P35135	96.203	79	3	0	28	106	24	102	7.71E-52	168

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028613.01.T01	G7KGF1	94.030	134	8	0	107	240	240	373	2.48e-72	249

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047790.01	MsG0580028613.01	0.832517	9.034059e-56	1.012131e-52
MsG0080048462.01	MsG0580028613.01	-0.809002	2.346486e-50	1.361676e-47
MsG0180000145.01	MsG0580028613.01	-0.806539	7.833578e-50	4.262813e-47
MsG0180000240.01	MsG0580028613.01	0.834953	2.224002e-56	2.680455e-53
MsG0180000355.01	MsG0580028613.01	-0.807094	5.978283e-50	3.300073e-47
MsG0180000400.01	MsG0580028613.01	0.847555	1.073653e-59	1.915598e-56
MsG0180001886.01	MsG0580028613.01	-0.824021	1.011581e-53	8.853909e-51
MsG0180002492.01	MsG0580028613.01	-0.817204	3.723065e-52	2.693965e-49
MsG0180003309.01	MsG0580028613.01	0.872692	2.616806e-67	1.105421e-63
MsG0180003572.01	MsG0580028613.01	-0.823198	1.575893e-53	1.347729e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028613.01.T01	MTR_5g021670	94.030	134	8	0	107	240	240	373	6.30e-76	249
MsG0580028613.01.T01	MTR_5g021670	37.143	140	81	4	101	240	505	637	6.36e-13	68.2
MsG0580028613.01.T01	MTR_5g021670	30.464	151	85	2	109	240	560	709	1.03e-12	67.8
MsG0580028613.01.T01	MTR_5g021670	33.588	131	81	3	110	240	369	493	1.57e-11	64.3
MsG0580028613.01.T01	MTR_5g021670	35.115	131	79	2	110	240	537	661	2.21e-11	63.9
MsG0580028613.01.T01	MTR_5g075580	98.734	79	1	0	28	106	24	102	3.10e-54	171
MsG0580028613.01.T01	MTR_3g062450	97.468	79	2	0	28	106	24	102	1.50e-53	170
MsG0580028613.01.T01	MTR_7g116940	90.805	87	7	1	28	113	24	110	4.59e-53	168
MsG0580028613.01.T01	MTR_7g116940	94.937	79	4	0	28	106	24	102	3.22e-52	166
MsG0580028613.01.T01	MTR_7g116940	94.937	79	4	0	28	106	24	102	5.75e-52	166

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028613.01.T01	AT5G41700	92.593	81	6	27	107	23	103	1.38e-53	170
MsG0580028613.01.T01	AT4G27960	94.937	79	4	28	106	24	102	1.03e-52	167
MsG0580028613.01.T01	AT5G41700	94.937	79	4	28	106	24	102	1.35e-52	167
MsG0580028613.01.T01	AT5G41700	94.937	79	4	28	106	24	102	1.35e-52	167
MsG0580028613.01.T01	AT5G41700	94.937	79	4	28	106	24	102	1.35e-52	167
MsG0580028613.01.T01	AT1G64230	93.671	79	5	28	106	24	102	1.45e-52	167
MsG0580028613.01.T01	AT1G64230	93.671	79	5	28	106	24	102	1.45e-52	167
MsG0580028613.01.T01	AT5G41700	94.937	79	4	28	106	25	103	1.65e-52	167
MsG0580028613.01.T01	AT1G64230	92.500	80	6	27	106	32	111	4.29e-52	166
MsG0580028613.01.T01	AT5G53300	92.500	80	6	27	106	23	102	5.11e-52	164

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Find 88 sgRNAs with CRISPR-Local

Find 679 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCCATTGGGGACGGGGAT+GGG	0.396524	5:-83409016	MsG0580028613.01.T01:CDS
AAGAACACTGAAACACGTGT+TGG	0.639217	5:+83399498	None:intergenic
AATACCTTTGGTGGCTTGAA+GGG	0.473573	5:+83406240	None:intergenic
AATCCCATCCCCGTCCCCAA+TGG	0.520092	5:+83409013	None:intergenic
AATCGCCGACGGAATCACGC+CGG	0.657691	5:+83399678	None:intergenic
AATGGTTTCACGAATTTCGT+TGG	0.455919	5:-83399529	MsG0580028613.01.T01:CDS
ACCTTGGAAATGGTTAAAGC+TGG	0.447093	5:+83403735	None:intergenic
ACGACGGGGACGGGATGGGG+CGG	0.412114	5:-83409048	None:intergenic
ACGCCGGAAAGTGAATTTGC+TGG	0.454956	5:+83399694	None:intergenic
ACTTTCCGGCGTGATTCCGT+CGG	0.566468	5:-83399683	MsG0580028613.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGAAAATATAACCCGG+GGG	-	Chr5:83401362-83401381	MsG0580028613.01.T01:intron	30.0%
AACTACGAGAATGTCATATT+AGG	-	Chr5:83405747-83405766	MsG0580028613.01.T01:intron	30.0%
AATTATAACTGGCTAATGCT+CGG	+	Chr5:83404777-83404796	None:intergenic	30.0%
ACAAAAGGACCTAAAATAGA+GGG	+	Chr5:83404859-83404878	None:intergenic	30.0%
ACTTGCACCAAAATTATAAC+TGG	+	Chr5:83404788-83404807	None:intergenic	30.0%
AGAAAATCCTACTGTAAGTT+GGG	+	Chr5:83404386-83404405	None:intergenic	30.0%
AGAAAGAAATATAAACACGG+TGG	+	Chr5:83405479-83405498	None:intergenic	30.0%
AGACACTTGTAATGATCTTA+TGG	-	Chr5:83408339-83408358	MsG0580028613.01.T01:intron	30.0%
AGTAGGTTATGATTATTGCA+AGG	+	Chr5:83404104-83404123	None:intergenic	30.0%
ATAAGCAAAGGCAAAAGTTA+TGG	-	Chr5:83408260-83408279	MsG0580028613.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	83399309	83409056	83399309	ID=MsG0580028613.01;Name=MsG0580028613.01
Chr5	mRNA	83399309	83409056	83399309	ID=MsG0580028613.01.T01;Parent=MsG0580028613.01;Name=MsG0580028613.01.T01;_AED=0.50;_eAED=0.55;_QI=0\|0.33\|0.5\|1\|1\|1\|4\|0\|242
Chr5	exon	83408975	83409056	83408975	ID=MsG0580028613.01.T01:exon:33350;Parent=MsG0580028613.01.T01
Chr5	exon	83406245	83406372	83406245	ID=MsG0580028613.01.T01:exon:33349;Parent=MsG0580028613.01.T01
Chr5	exon	83403737	83403841	83403737	ID=MsG0580028613.01.T01:exon:33348;Parent=MsG0580028613.01.T01
Chr5	exon	83399309	83399722	83399309	ID=MsG0580028613.01.T01:exon:33347;Parent=MsG0580028613.01.T01
Chr5	CDS	83408975	83409056	83408975	ID=MsG0580028613.01.T01:cds;Parent=MsG0580028613.01.T01
Chr5	CDS	83406245	83406372	83406245	ID=MsG0580028613.01.T01:cds;Parent=MsG0580028613.01.T01
Chr5	CDS	83403737	83403841	83403737	ID=MsG0580028613.01.T01:cds;Parent=MsG0580028613.01.T01
Chr5	CDS	83399309	83399722	83399309	ID=MsG0580028613.01.T01:cds;Parent=MsG0580028613.01.T01

Gene Sequence

>MsG0580028613.01.T01

ATGGGGCGGGAATATCCGAACCCATTGGGGACGGGGATGGGATTCAATTTCTCATCCCCGTTGGATATGGACACAGTAACGGGTCCTGTGGCTGAGGACATGTTCCACTGGCAAGCCACAATCATGGGACCGGCTGATAGCCCATATACTGGTGGTGTGTTCCTGGTTTCAATTCATTTTCCTCCTGACTATCCCTTCAAGCCACCAAAGGTTGCTTTTAGGACCAAGGTGTTCCACCCAAACATCAACAGTAATGGCAGTATATGTCTCGACATTCTGAAGGAACAGTGGAGCCCAGCTTTAACCATTTCCAAGCTATCTCCAGCAAATTCACTTTCCGGCGTGATTCCGTCGGCGATTTCGGCGCTTCCGATGCTTCAGGTGATGTCACTTTCTCACAATAATCTTACTGGATCAATTCCTGCTTCGGTTTTTTGCAATGTTTCGGTCCACGCGCCGTCTTTGAGGATAGTTCAGCTTGGATTCAATGGTTTCACGAATTTCGTTGGAGTTGAAACCAACACGTGTTTCAGTGTTCTTCAGGTTTTGGATATTCAACATAATAGCATAAGAGGCATGTTTCCCTTGTGGTTAACCAATGTAACTACTCTGTCAGTGCTTGATCTTTCGAGTAATGCACTTTCCGACGAAATTCCGCGGCAAATAGGAAATCTCGCCGGGTTGACGGAGTTGAAGGTGGCTAATAATTCATTCACTGGCTTCTCCTAA

Protein sequence

>MsG0580028613.01.T01

MGREYPNPLGTGMGFNFSSPLDMDTVTGPVAEDMFHWQATIMGPADSPYTGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLSPANSLSGVIPSAISALPMLQVMSLSHNNLTGSIPASVFCNVSVHAPSLRIVQLGFNGFTNFVGVETNTCFSVLQVLDIQHNSIRGMFPLWLTNVTTLSVLDLSSNALSDEIPRQIGNLAGLTELKVANNSFTGFS*