AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003572.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003572.01.T01 MTR_1g064260 99.123 114 1 0 67 180 1 114 2.07e-79 236
MsG0180003572.01.T01 MTR_7g101290 92.793 111 8 0 70 180 5 115 1.07e-73 221
MsG0180003572.01.T01 MTR_0041s0100 92.793 111 8 0 70 180 5 115 1.07e-73 221
MsG0180003572.01.T01 MTR_2g094790 85.965 114 16 0 67 180 1 114 4.77e-69 209
MsG0180003572.01.T01 MTR_4g058740 92.233 103 8 0 78 180 12 114 3.64e-66 202
MsG0180003572.01.T01 MTR_3g113710 78.095 105 23 0 76 180 12 116 8.19e-59 183
MsG0180003572.01.T01 MTR_3g113710 78.095 105 23 0 76 180 12 116 1.71e-58 183
MsG0180003572.01.T01 MTR_1g057020 75.238 105 26 0 76 180 6 110 3.11e-58 182
MsG0180003572.01.T01 MTR_1g015830 66.346 104 35 0 77 180 7 110 5.14e-48 155
MsG0180003572.01.T01 MTR_1g024145 67.816 87 28 0 94 180 150 236 7.73e-37 128
MsG0180003572.01.T01 MTR_1g064260 98.276 58 1 0 123 180 1 58 8.51e-35 120
MsG0180003572.01.T01 MTR_1g024850 74.286 70 18 0 76 145 14 83 4.50e-34 116
MsG0180003572.01.T01 MTR_4g080270 66.667 84 26 2 1 83 1 83 1.22e-29 106
MsG0180003572.01.T01 MTR_3g463840 65.476 84 27 2 1 83 1 83 9.81e-29 105
MsG0180003572.01.T01 MTR_0025s0030 71.795 78 18 3 1 76 1 76 1.96e-28 102
MsG0180003572.01.T01 MTR_2g097460 83.607 61 9 1 1 60 1 61 2.22e-27 103
MsG0180003572.01.T01 MTR_7g029190 64.286 84 28 2 1 83 1 83 2.79e-27 104
MsG0180003572.01.T01 MTR_2g088410 64.286 84 28 2 1 83 1 83 3.99e-27 103
MsG0180003572.01.T01 MTR_2g058950 63.095 84 29 2 1 83 1 83 1.25e-26 100
MsG0180003572.01.T01 MTR_4g112560 61.905 84 30 2 1 83 1 83 1.57e-26 99.4
MsG0180003572.01.T01 MTR_2g088420 63.095 84 29 2 1 83 1 83 1.58e-26 100
MsG0180003572.01.T01 MTR_4g112550 63.095 84 29 2 1 83 1 83 2.22e-26 101
MsG0180003572.01.T01 MTR_5g042120 70.130 77 21 2 1 76 1 76 2.33e-26 101
MsG0180003572.01.T01 MTR_8g080750 61.905 84 30 2 1 83 1 83 3.08e-26 101
MsG0180003572.01.T01 MTR_4g045797 57.143 98 34 3 1 91 1 97 3.14e-26 99.0
MsG0180003572.01.T01 MTR_2g011030 60.215 93 27 4 1 85 1 91 3.59e-26 96.3
MsG0180003572.01.T01 MTR_5g019740 61.905 84 30 2 1 83 1 83 5.11e-26 99.0
MsG0180003572.01.T01 MTR_4g020670 63.095 84 29 2 1 83 1 83 5.36e-26 102
MsG0180003572.01.T01 MTR_4g020660 61.905 84 30 2 1 83 1 83 1.06e-25 97.8
MsG0180003572.01.T01 MTR_3g032610 83.929 56 8 1 1 55 1 56 3.90e-24 95.9
MsG0180003572.01.T01 MTR_5g054370 70.492 61 17 1 1 60 1 61 1.41e-22 89.7
MsG0180003572.01.T01 MTR_1g015830 62.069 58 22 0 123 180 1 58 2.32e-20 83.6
MsG0180003572.01.T01 MTR_5g028740 59.740 77 15 3 1 76 1 62 1.02e-17 77.4
MsG0180003572.01.T01 MTR_3g113710 82.927 41 7 0 140 180 10 50 4.28e-17 74.7
MsG0180003572.01.T01 MTR_5g042130 75.410 61 14 1 1 60 1 61 1.30e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003572.01.T01 AT2G37210 87.826 115 13 1 67 180 1 115 3.50e-70 213
MsG0180003572.01.T01 AT2G37210 87.826 115 13 1 67 180 1 115 6.38e-70 211
MsG0180003572.01.T01 AT3G53450 86.957 115 14 1 67 180 1 115 1.45e-68 208
MsG0180003572.01.T01 AT2G28305 89.524 105 11 0 76 180 5 109 1.28e-65 198
MsG0180003572.01.T01 AT2G28305 89.524 105 11 0 76 180 5 109 2.37e-65 199
MsG0180003572.01.T01 AT2G28305 89.524 105 11 0 76 180 5 109 9.40e-65 198
MsG0180003572.01.T01 AT5G06300 83.810 105 17 0 76 180 6 110 1.19e-62 193
MsG0180003572.01.T01 AT5G03270 83.654 104 17 0 76 179 16 119 4.96e-58 181
MsG0180003572.01.T01 AT5G03270 83.654 104 17 0 76 179 16 119 7.70e-58 180
MsG0180003572.01.T01 AT2G35990 69.524 105 32 0 76 180 6 110 2.77e-54 172
MsG0180003572.01.T01 AT4G35190 71.560 109 31 0 72 180 2 110 8.84e-53 167
MsG0180003572.01.T01 AT4G35190 71.560 109 31 0 72 180 2 110 1.36e-52 168
MsG0180003572.01.T01 AT5G11950 64.762 105 37 0 76 180 7 111 1.02e-47 155
MsG0180003572.01.T01 AT5G11950 64.762 105 37 0 76 180 7 111 1.02e-47 155
MsG0180003572.01.T01 AT5G11950 64.762 105 37 0 76 180 7 111 1.02e-47 155
MsG0180003572.01.T01 AT2G35990 70.690 58 17 0 123 180 1 58 2.25e-25 96.7
MsG0180003572.01.T01 AT2G35990 70.690 58 17 0 123 180 1 58 2.25e-25 96.7
MsG0180003572.01.T01 AT5G11950 62.069 58 22 0 123 180 1 58 2.46e-20 83.6

Find 32 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATATTGATCTAGTTTA+TGG 0.173128 1:-64339280 MsG0180003572.01.T01:CDS
AAGAAAGTTTAGTAAACTTA+AGG 0.324842 1:-64344990 MsG0180003572.01.T01:CDS
TATTCTAAAATTCGGAATAA+TGG 0.325157 1:-64344948 MsG0180003572.01.T01:intron
CAAGATGCTGCCATTGAACT+TGG 0.349737 1:-64339737 MsG0180003572.01.T01:CDS
AGGAGGAAGCATTGGTCTAA+TGG 0.380070 1:-64339257 MsG0180003572.01.T01:CDS
CATTGAACTTGGAAATGAAT+TGG 0.407304 1:-64339726 MsG0180003572.01.T01:intron
GATGGTGGAAGACATGTCAT+AGG 0.434367 1:-64339211 MsG0180003572.01.T01:CDS
CTCTCTAGGCATGAGTGTCT+TGG 0.437074 1:+64339049 None:intergenic
AAGCATTGGTCTAATGGGTT+CGG 0.439439 1:-64339251 MsG0180003572.01.T01:CDS
GGAGGAAGCATTGGTCTAAT+GGG 0.451429 1:-64339256 MsG0180003572.01.T01:CDS
TCTCTAGGCATGAGTGTCTT+GGG 0.451553 1:+64339050 None:intergenic
TTCTTTAGCTCAGGCTAACC+TGG 0.461437 1:+64338509 None:intergenic
CAATTCATTTCCAAGTTCAA+TGG 0.462751 1:+64339727 None:intergenic
GGTGTACTATTCTTTAGCTC+AGG 0.493281 1:+64338500 None:intergenic
ACAAATACAATGGAGACAAA+TGG 0.506437 1:-64339833 MsG0180003572.01.T01:CDS
ATTGATCTAGTTTATGGAGG+AGG 0.513882 1:-64339274 MsG0180003572.01.T01:CDS
GTTTATGGAGGAGGAAGCAT+TGG 0.534440 1:-64339265 MsG0180003572.01.T01:CDS
GTTTCACAAGCTGTTCATGA+TGG 0.539577 1:-64339229 MsG0180003572.01.T01:CDS
TTTGCAGCTAACTGGTGAAA+CGG 0.542234 1:-64338611 MsG0180003572.01.T01:intron
CTGTAGCAGATATGCATCAA+AGG 0.549564 1:-64338573 MsG0180003572.01.T01:CDS
TAAGAGTGTCAAAGTTCAAG+AGG 0.560240 1:-64339805 MsG0180003572.01.T01:CDS
GCATCAAAGGAAGGCAGAGA+TGG 0.563589 1:-64338560 MsG0180003572.01.T01:CDS
AATATTGATCTAGTTTATGG+AGG 0.578824 1:-64339277 MsG0180003572.01.T01:CDS
TCACAAGCTGTTCATGATGG+TGG 0.582768 1:-64339226 MsG0180003572.01.T01:CDS
TTAGCTCAGGCTAACCTGGT+AGG 0.591608 1:+64338513 None:intergenic
CAGCTAACTGGTGAAACGGT+GGG 0.599390 1:-64338607 MsG0180003572.01.T01:CDS
ATGGTGGAAGACATGTCATA+GGG 0.603354 1:-64339210 MsG0180003572.01.T01:intron
GCAGCTAACTGGTGAAACGG+TGG 0.613685 1:-64338608 MsG0180003572.01.T01:intron
GTTGCAAGAAACAAATACAA+TGG 0.613778 1:-64339843 MsG0180003572.01.T01:CDS
CAAGACACTCATGCCTAGAG+AGG 0.614658 1:-64339048 MsG0180003572.01.T01:intron
AAGAGTGTCAAAGTTCAAGA+GGG 0.616352 1:-64339804 MsG0180003572.01.T01:CDS
AGCAGATATGCATCAAAGGA+AGG 0.629113 1:-64338569 MsG0180003572.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATATGAAAAAACTTT+AGG + Chr1:64344195-64344214 None:intergenic 10.0%
!! AAGAATGAATTAAAATTAAA+GGG - Chr1:64340706-64340725 MsG0180003572.01.T01:intron 10.0%
!! GAAATATATATTTCTTAAAT+AGG - Chr1:64341450-64341469 MsG0180003572.01.T01:intron 10.0%
!! TAAAAGTAATAATAAAGAAA+TGG - Chr1:64344814-64344833 MsG0180003572.01.T01:intron 10.0%
!! TAAGAATGAATTAAAATTAA+AGG - Chr1:64340705-64340724 MsG0180003572.01.T01:intron 10.0%
!! TATTTATCAAAAAAATTAGT+TGG - Chr1:64342438-64342457 MsG0180003572.01.T01:intron 10.0%
!!! AAAATCTTATTTATTTTTTG+TGG - Chr1:64343969-64343988 MsG0180003572.01.T01:intron 10.0%
!!! AATTAATACTTTTTAAAACT+AGG - Chr1:64339521-64339540 MsG0180003572.01.T01:intron 10.0%
!!! AGAAAAAATATTCTAAAATT+CGG - Chr1:64338654-64338673 MsG0180003572.01.T01:intron 10.0%
!!! TTTTTTAGTATAATAAAATG+CGG + Chr1:64341581-64341600 None:intergenic 10.0%
!! AATGAAAAAGTGAATAATAA+AGG + Chr1:64344668-64344687 None:intergenic 15.0%
!! CACTTTACATATTATTATAA+TGG + Chr1:64341523-64341542 None:intergenic 15.0%
!! GAAAAACATATAAAAAAACA+AGG - Chr1:64342818-64342837 MsG0180003572.01.T01:intron 15.0%
!!! ATTCAAATCTATATCTTTTA+GGG + Chr1:64338991-64339010 None:intergenic 15.0%
!!! ATTTTTTTTTCTCAAAAAAG+AGG + Chr1:64343954-64343973 None:intergenic 15.0%
!!! TAGAATTATACATTACTTTT+AGG + Chr1:64341557-64341576 None:intergenic 15.0%
!!! TATCTCAAAATTTTGATAAA+TGG + Chr1:64342420-64342439 None:intergenic 15.0%
!!! TATTAAGTTTGAAATGAAAA+TGG + Chr1:64344264-64344283 None:intergenic 15.0%
!!! TATTCAAATCTATATCTTTT+AGG + Chr1:64338992-64339011 None:intergenic 15.0%
!!! TGTTAAAGTTATTTTCTTTT+GGG - Chr1:64344767-64344786 MsG0180003572.01.T01:intron 15.0%
!!! TTGATATAAATTTTACAGAT+GGG - Chr1:64338962-64338981 MsG0180003572.01.T01:intron 15.0%
!!! TTGTTAAAGTTATTTTCTTT+TGG - Chr1:64344766-64344785 MsG0180003572.01.T01:intron 15.0%
!!! TTTGATATAAATTTTACAGA+TGG - Chr1:64338961-64338980 MsG0180003572.01.T01:intron 15.0%
!!! TTTTTAGTATAATAAAATGC+GGG + Chr1:64341580-64341599 None:intergenic 15.0%
!! AAAAAGTTTCTATCCATAAT+AGG + Chr1:64342190-64342209 None:intergenic 20.0%
!! AAACATATAAAAAAACAAGG+TGG - Chr1:64342821-64342840 MsG0180003572.01.T01:intron 20.0%
!! AAGAAAGTTTAGTAAACTTA+AGG - Chr1:64338620-64338639 MsG0180003572.01.T01:intron 20.0%
!! AATTAAAATATATCACAACG+GGG - Chr1:64340896-64340915 MsG0180003572.01.T01:intron 20.0%
!! ACAAACCATTAAAATTGATT+GGG + Chr1:64344300-64344319 None:intergenic 20.0%
!! ATAATTCTTCATGACTTAAA+TGG + Chr1:64340970-64340989 None:intergenic 20.0%
!! ATATTGAATTATAAGCCAAA+TGG - Chr1:64340659-64340678 MsG0180003572.01.T01:intron 20.0%
!! ATTCTGTAGTAAATTGTAAA+AGG + Chr1:64339073-64339092 None:intergenic 20.0%
!! CAATTAAAATATATCACAAC+GGG - Chr1:64340895-64340914 MsG0180003572.01.T01:intron 20.0%
!! CCAATTAAAATATATCACAA+CGG - Chr1:64340894-64340913 MsG0180003572.01.T01:intron 20.0%
!! TATAGATTTAATTGAAGATC+TGG - Chr1:64339636-64339655 MsG0180003572.01.T01:intron 20.0%
!! TATCAAAAAAATTAGTTGGT+GGG - Chr1:64342442-64342461 MsG0180003572.01.T01:intron 20.0%
!! TATTAGAAATATAACCTACA+TGG + Chr1:64339956-64339975 None:intergenic 20.0%
!! TCAAAAATTTACACTAATGA+TGG - Chr1:64342719-64342738 MsG0180003572.01.T01:intron 20.0%
!! TCATAAAAATGAAAACTTTG+AGG + Chr1:64344439-64344458 None:intergenic 20.0%
!! TTAACTTAAAATACAGAACA+GGG + Chr1:64344722-64344741 None:intergenic 20.0%
!! TTATCAAAAAAATTAGTTGG+TGG - Chr1:64342441-64342460 MsG0180003572.01.T01:intron 20.0%
!!! AAAATTCTTTTAGAACCTTT+TGG - Chr1:64339707-64339726 MsG0180003572.01.T01:intron 20.0%
!!! AAATCTTTTTGATCTTTGTT+CGG + Chr1:64339303-64339322 None:intergenic 20.0%
!!! AAATTCTTTTAGAACCTTTT+GGG - Chr1:64339708-64339727 MsG0180003572.01.T01:intron 20.0%
!!! AACTTTTTTCTATGATTTGT+CGG - Chr1:64342202-64342221 MsG0180003572.01.T01:intron 20.0%
!!! ACTTTTGATTAGAATTTGAA+TGG + Chr1:64338823-64338842 None:intergenic 20.0%
!!! AGAAATATTGATCTAGTTTA+TGG - Chr1:64344330-64344349 MsG0180003572.01.T01:intron 20.0%
!!! ATCATTAGTGTAAATTTTTG+AGG + Chr1:64342720-64342739 None:intergenic 20.0%
!!! ATTTGGCTTATAATTCAATA+TGG + Chr1:64340660-64340679 None:intergenic 20.0%
!!! ATTTTTTCTAAACCTTGAAA+GGG + Chr1:64340046-64340065 None:intergenic 20.0%
!!! CTTATTTATTTTTTGTGGAT+GGG - Chr1:64343974-64343993 MsG0180003572.01.T01:intron 20.0%
!!! GGAAATTGTAATCTAAAATA+TGG - Chr1:64338929-64338948 MsG0180003572.01.T01:intron 20.0%
!!! TATTCTAAAATTCGGAATAA+TGG - Chr1:64338662-64338681 MsG0180003572.01.T01:intron 20.0%
!!! TCAGACAATTTTTCTATTTT+TGG + Chr1:64340769-64340788 None:intergenic 20.0%
!!! TCATTAGTGTAAATTTTTGA+GGG + Chr1:64342719-64342738 None:intergenic 20.0%
!!! TCTTATTTATTTTTTGTGGA+TGG - Chr1:64343973-64343992 MsG0180003572.01.T01:intron 20.0%
!!! TGTCTTTTTAAATCGTTATT+TGG + Chr1:64340226-64340245 None:intergenic 20.0%
!!! TTATTTATTTTTTGTGGATG+GGG - Chr1:64343975-64343994 MsG0180003572.01.T01:intron 20.0%
!!! TTTTACACCATTAATTACTT+TGG - Chr1:64339160-64339179 MsG0180003572.01.T01:intron 20.0%
!!! TTTTTCCATTTTGTTTCAAT+TGG + Chr1:64338705-64338724 None:intergenic 20.0%
! AAACTATCAACTTAAAAGCA+TGG - Chr1:64340552-64340571 MsG0180003572.01.T01:intron 25.0%
! AAATGAAGAGTTCTATAAGA+CGG - Chr1:64342552-64342571 MsG0180003572.01.T01:intron 25.0%
! AACAATTAATATGCACCATT+TGG - Chr1:64340622-64340641 MsG0180003572.01.T01:intron 25.0%
! AATGATTACGTTACATGTTA+TGG - Chr1:64343264-64343283 MsG0180003572.01.T01:intron 25.0%
! AATTAATAATCGTTGTGGAT+GGG + Chr1:64342037-64342056 None:intergenic 25.0%
! ACAAGATGTTTAAGGAATAT+GGG - Chr1:64341739-64341758 MsG0180003572.01.T01:intron 25.0%
! ACATTAAACATTTATCTGTG+AGG + Chr1:64341051-64341070 None:intergenic 25.0%
! AGGAAAAAAAACAGTATGTA+AGG + Chr1:64343934-64343953 None:intergenic 25.0%
! ATAAATACTTTCGATGAAGA+GGG - Chr1:64341473-64341492 MsG0180003572.01.T01:intron 25.0%
! ATAAGAAACATAGTGTAAGT+TGG + Chr1:64341874-64341893 None:intergenic 25.0%
! ATCCTATAGACCAAAATTAA+TGG - Chr1:64343175-64343194 MsG0180003572.01.T01:intron 25.0%
! ATCTAGTAAGTGATATAGAA+TGG - Chr1:64339551-64339570 MsG0180003572.01.T01:intron 25.0%
! ATGAAAAACTTATGTTTCAC+GGG + Chr1:64341171-64341190 None:intergenic 25.0%
! ATGATTACGTTACATGTTAT+GGG - Chr1:64343265-64343284 MsG0180003572.01.T01:intron 25.0%
! ATTCCTTTGTATATTTCAGT+TGG - Chr1:64344041-64344060 MsG0180003572.01.T01:intron 25.0%
! CAATTCCAATTGAAACAAAA+TGG - Chr1:64338697-64338716 MsG0180003572.01.T01:intron 25.0%
! CACAAACCATTAAAATTGAT+TGG + Chr1:64344301-64344320 None:intergenic 25.0%
! CTTAACTTAAAATACAGAAC+AGG + Chr1:64344723-64344742 None:intergenic 25.0%
! GATGAAAAACTTATGTTTCA+CGG + Chr1:64341172-64341191 None:intergenic 25.0%
! GATTCAACATTTATGAAAGA+AGG - Chr1:64339040-64339059 MsG0180003572.01.T01:intron 25.0%
! GATTTAATAATCTACCATGT+AGG - Chr1:64339939-64339958 MsG0180003572.01.T01:intron 25.0%
! TAAACAGAAACTAGTTAAGA+TGG + Chr1:64341943-64341962 None:intergenic 25.0%
! TATAAAAACTCTATCGATAC+AGG - Chr1:64339439-64339458 MsG0180003572.01.T01:intron 25.0%
! TGATCAATTAATAATCGTTG+TGG + Chr1:64342042-64342061 None:intergenic 25.0%
! TTAATGACACATTCCTATTA+TGG - Chr1:64342174-64342193 MsG0180003572.01.T01:intron 25.0%
! TTCCTTTGTATATTTCAGTT+GGG - Chr1:64344042-64344061 MsG0180003572.01.T01:intron 25.0%
! TTTATGTTTACAAGATCCTA+TGG - Chr1:64343133-64343152 MsG0180003572.01.T01:intron 25.0%
!! AAAAGACTTGGAAAATTTTC+TGG - Chr1:64338760-64338779 MsG0180003572.01.T01:intron 25.0%
!! AACTATCAACTTAAAAGCAT+GGG - Chr1:64340553-64340572 MsG0180003572.01.T01:intron 25.0%
!! AATATTGATCTAGTTTATGG+AGG - Chr1:64344333-64344352 MsG0180003572.01.T01:intron 25.0%
!! CTTATCCCAATCAATTTTAA+TGG - Chr1:64344292-64344311 MsG0180003572.01.T01:intron 25.0%
!! GAAGATTAGTCAATGTTAAA+TGG + Chr1:64342795-64342814 None:intergenic 25.0%
!! TCTTCAAACATATTCTTTTC+TGG + Chr1:64339236-64339255 None:intergenic 25.0%
!! TGTTGTTTATATAAACCCAA+TGG - Chr1:64343508-64343527 MsG0180003572.01.T01:intron 25.0%
!! TTATTTTCATGTTTATCCCT+AGG + Chr1:64340146-64340165 None:intergenic 25.0%
!! TTTCTCGTGATACTTTAAAA+TGG + Chr1:64339193-64339212 None:intergenic 25.0%
!!! AAACATGTTTTTTGTGTGTT+TGG + Chr1:64340336-64340355 None:intergenic 25.0%
!!! AAAGTTATTTTCTTTTGGGT+AGG - Chr1:64344771-64344790 MsG0180003572.01.T01:intron 25.0%
!!! AACATGTTTTTTGTGTGTTT+GGG + Chr1:64340335-64340354 None:intergenic 25.0%
!!! AATTCTTTTAGAACCTTTTG+GGG - Chr1:64339709-64339728 MsG0180003572.01.T01:intron 25.0%
!!! ATTCCAATTGTTCTAAAGAT+TGG - Chr1:64342476-64342495 MsG0180003572.01.T01:intron 25.0%
!!! CAAAATTTTGATAAATGGAG+AGG + Chr1:64342415-64342434 None:intergenic 25.0%
!!! CATTAGTGTAAATTTTTGAG+GGG + Chr1:64342718-64342737 None:intergenic 25.0%
!!! CCGTTGTGATATATTTTAAT+TGG + Chr1:64340897-64340916 None:intergenic 25.0%
!!! GATTTTTTCTAAACCTTGAA+AGG + Chr1:64340047-64340066 None:intergenic 25.0%
!!! GTTCACTTTTCTATTTAATG+TGG - Chr1:64341069-64341088 MsG0180003572.01.T01:intron 25.0%
!!! TCAATTTTAATGGTTTGTGA+AGG - Chr1:64344302-64344321 MsG0180003572.01.T01:intron 25.0%
!!! TCTGAAGTTTCATATTTTGA+AGG - Chr1:64338516-64338535 MsG0180003572.01.T01:CDS 25.0%
!!! TGCATTTTTTCTTTCTATCA+TGG - Chr1:64342747-64342766 MsG0180003572.01.T01:intron 25.0%
!!! TGTGATTTTTTTTCCTTTGA+TGG - Chr1:64342104-64342123 MsG0180003572.01.T01:intron 25.0%
AAAACAAGCAGTAATGCAAA+AGG - Chr1:64338908-64338927 MsG0180003572.01.T01:intron 30.0%
AAAATACAGAACAGGGAAAT+AGG + Chr1:64344715-64344734 None:intergenic 30.0%
AAGAAATAAGTTGTCACACA+AGG + Chr1:64342343-64342362 None:intergenic 30.0%
AATGAAGAGTTCTATAAGAC+GGG - Chr1:64342553-64342572 MsG0180003572.01.T01:intron 30.0%
AATTATAAGCCAAATGGCAA+TGG - Chr1:64340665-64340684 MsG0180003572.01.T01:intron 30.0%
ACAAATACAATGGAGACAAA+TGG - Chr1:64343777-64343796 MsG0180003572.01.T01:intron 30.0%
ACTAAAAAAGTCAAAATGCC+TGG - Chr1:64339481-64339500 MsG0180003572.01.T01:intron 30.0%
ATTCAATATGCTCCTTGTAT+CGG + Chr1:64341267-64341286 None:intergenic 30.0%
CAAAAAAAAAGAAGCCAGAA+AGG - Chr1:64340507-64340526 MsG0180003572.01.T01:intron 30.0%
CAACAAATCGATAAAAGACT+TGG - Chr1:64338748-64338767 MsG0180003572.01.T01:intron 30.0%
CAATTAATAATCGTTGTGGA+TGG + Chr1:64342038-64342057 None:intergenic 30.0%
CAATTCATTTCCAAGTTCAA+TGG + Chr1:64343886-64343905 None:intergenic 30.0%
CATTGAACTTGGAAATGAAT+TGG - Chr1:64343884-64343903 MsG0180003572.01.T01:intron 30.0%
CTAAAATTCGGAATAATGGT+AGG - Chr1:64338666-64338685 MsG0180003572.01.T01:intron 30.0%
CTTATTTCGAAATCCTTTCT+AGG + Chr1:64339386-64339405 None:intergenic 30.0%
GACAAGATGTTTAAGGAATA+TGG - Chr1:64341738-64341757 MsG0180003572.01.T01:intron 30.0%
GATAAATACTTTCGATGAAG+AGG - Chr1:64341472-64341491 MsG0180003572.01.T01:intron 30.0%
GTAACAAACAACATTAGTAC+TGG + Chr1:64343338-64343357 None:intergenic 30.0%
GTTGCAAGAAACAAATACAA+TGG - Chr1:64343767-64343786 MsG0180003572.01.T01:intron 30.0%
TAACCTAAAACCTTAAGACA+TGG - Chr1:64341016-64341035 MsG0180003572.01.T01:intron 30.0%
TCACTCATAGCATAGAATAT+AGG - Chr1:64339111-64339130 MsG0180003572.01.T01:intron 30.0%
TCTCTTTGTAAGTTAAAGTG+TGG + Chr1:64341387-64341406 None:intergenic 30.0%
TGAAATGAAATGCTATTGCT+TGG + Chr1:64343571-64343590 None:intergenic 30.0%
TGAATCAATACCTTTCATGA+AGG + Chr1:64338847-64338866 None:intergenic 30.0%
TGCATAGAGCCAATAAAATT+TGG - Chr1:64343092-64343111 MsG0180003572.01.T01:intron 30.0%
TGGGGAATGAAATATTTGAT+GGG - Chr1:64341696-64341715 MsG0180003572.01.T01:intron 30.0%
TGTTTAAGGAATATGGGTAA+TGG - Chr1:64341745-64341764 MsG0180003572.01.T01:intron 30.0%
TTGGGGAATGAAATATTTGA+TGG - Chr1:64341695-64341714 MsG0180003572.01.T01:intron 30.0%
TTTCTGACTCTTTAAACAAG+TGG + Chr1:64342904-64342923 None:intergenic 30.0%
! AAACCATGTCTTAAGGTTTT+AGG + Chr1:64341022-64341041 None:intergenic 30.0%
! CACATGTGTCCAAATTTTAT+TGG + Chr1:64343104-64343123 None:intergenic 30.0%
! GATACTTTAAAAAGCTGAGA+AGG + Chr1:64344242-64344261 None:intergenic 30.0%
! GATTAGTCAATGTTAAATGG+TGG + Chr1:64342792-64342811 None:intergenic 30.0%
! GTACTGGTAACATAATTAGT+AGG + Chr1:64343322-64343341 None:intergenic 30.0%
! TTGTGTGACAACTTATTTCT+TGG - Chr1:64342342-64342361 MsG0180003572.01.T01:intron 30.0%
!! AAAATTAGTTGGTGGGTTAT+TGG - Chr1:64342449-64342468 MsG0180003572.01.T01:intron 30.0%
!! AATTAAAGGGTCTTGTTAAC+TGG - Chr1:64340719-64340738 MsG0180003572.01.T01:intron 30.0%
!! ACTCTGTTTTAGATTTATCC+AGG + Chr1:64339826-64339845 None:intergenic 30.0%
!! ATCAAAAGTACCTTCATGAA+AGG - Chr1:64338834-64338853 MsG0180003572.01.T01:intron 30.0%
!! GTACCAATCTTTAGAACAAT+TGG + Chr1:64342482-64342501 None:intergenic 30.0%
!! TCGTGATACTTTAAAATGGT+GGG + Chr1:64339189-64339208 None:intergenic 30.0%
!! TGCCATTAATTTTGGTCTAT+AGG + Chr1:64343180-64343199 None:intergenic 30.0%
!! TTTTCTGAAAAGTCGCTTAT+GGG + Chr1:64340272-64340291 None:intergenic 30.0%
!!! ACTCTTTTGTTTTACTTCAG+TGG - Chr1:64344845-64344864 MsG0180003572.01.T01:intron 30.0%
!!! GATTTTTTTTCCTTTGATGG+TGG - Chr1:64342107-64342126 MsG0180003572.01.T01:intron 30.0%
AAAATTTGGACACATGTGCA+GGG - Chr1:64343106-64343125 MsG0180003572.01.T01:intron 35.0%
AAGCAGAGAAAAAGAGCTTA+AGG - Chr1:64339403-64339422 MsG0180003572.01.T01:intron 35.0%
ACAAAACAGAACAAGTGGAA+AGG - Chr1:64342248-64342267 MsG0180003572.01.T01:intron 35.0%
ACAAGACAACTATTGTTGTG+GGG + Chr1:64343434-64343453 None:intergenic 35.0%
ACACTATCAAAATGGCCATT+GGG + Chr1:64343526-64343545 None:intergenic 35.0%
ACAGAAACTAGTTAAGATGG+TGG + Chr1:64341940-64341959 None:intergenic 35.0%
ACTTCAGTGACATAATGTCA+CGG - Chr1:64343061-64343080 MsG0180003572.01.T01:intron 35.0%
AGATGAGGACAAGATGTTTA+AGG - Chr1:64341731-64341750 MsG0180003572.01.T01:intron 35.0%
AGGATCCAATGGATAAGAAA+TGG + Chr1:64344978-64344997 None:intergenic 35.0%
ATAGAGTCATTGTTGCATGT+AGG - Chr1:64343033-64343052 MsG0180003572.01.T01:intron 35.0%
ATTTCGAAATCCTTTCTAGG+TGG + Chr1:64339383-64339402 None:intergenic 35.0%
CAATAGTGGTATAAAAGTCG+AGG + Chr1:64341300-64341319 None:intergenic 35.0%
CCAATACAAAACAGAACAAG+TGG - Chr1:64342243-64342262 MsG0180003572.01.T01:intron 35.0%
CTGGTAACATAATTAGTAGG+TGG + Chr1:64343319-64343338 None:intergenic 35.0%
CTGTTCCATTTCTTATCCAT+TGG - Chr1:64344970-64344989 MsG0180003572.01.T01:CDS 35.0%
GAAACGAGAGAAAAAGGATT+GGG - Chr1:64338782-64338801 MsG0180003572.01.T01:intron 35.0%
GACAAATAAACCAGTGTCAA+TGG + Chr1:64344514-64344533 None:intergenic 35.0%
GACAAGACAACTATTGTTGT+GGG + Chr1:64343435-64343454 None:intergenic 35.0%
GACCCAACTGAAATATACAA+AGG + Chr1:64344047-64344066 None:intergenic 35.0%
GACTCATAAACCATGTCTTA+AGG + Chr1:64341029-64341048 None:intergenic 35.0%
GATTTAAAAAGACATCCACG+TGG - Chr1:64340232-64340251 MsG0180003572.01.T01:intron 35.0%
GGAATGAAATATTTGATGGG+TGG - Chr1:64341699-64341718 MsG0180003572.01.T01:intron 35.0%
GTGATGTTATTCGAAGACTT+TGG + Chr1:64339281-64339300 None:intergenic 35.0%
GTTGCACTTGTACACATAAT+TGG - Chr1:64342295-64342314 MsG0180003572.01.T01:intron 35.0%
GTTTATGCTGAGCAAGTTAT+GGG + Chr1:64341971-64341990 None:intergenic 35.0%
TAAAATTTGGACACATGTGC+AGG - Chr1:64343105-64343124 MsG0180003572.01.T01:intron 35.0%
TAAGCGCATCTATTCTCTAT+GGG - Chr1:64341138-64341157 MsG0180003572.01.T01:intron 35.0%
TAATCCCAATATAGCCTTTC+TGG + Chr1:64340524-64340543 None:intergenic 35.0%
TACACTATCAAAATGGCCAT+TGG + Chr1:64343527-64343546 None:intergenic 35.0%
TACGTTACATGTTATGGGAA+AGG - Chr1:64343270-64343289 MsG0180003572.01.T01:intron 35.0%
TAGAGTCATTGTTGCATGTA+GGG - Chr1:64343034-64343053 MsG0180003572.01.T01:intron 35.0%
TAGTCAATGTTAAATGGTGG+TGG + Chr1:64342789-64342808 None:intergenic 35.0%
TCTGATTTAAGAGTTAGACC+AGG + Chr1:64339502-64339521 None:intergenic 35.0%
TGAGTGAATCACAAAATGCA+AGG + Chr1:64342528-64342547 None:intergenic 35.0%
TGGAGTACATTACTACCAAA+TGG + Chr1:64340640-64340659 None:intergenic 35.0%
TGGGTGTCCAAAGTAATTAA+TGG + Chr1:64339170-64339189 None:intergenic 35.0%
TGTTTATGCTGAGCAAGTTA+TGG + Chr1:64341972-64341991 None:intergenic 35.0%
TTAAGCGCATCTATTCTCTA+TGG - Chr1:64341137-64341156 MsG0180003572.01.T01:intron 35.0%
TTTCTCGAGCTTCGTTTATA+AGG + Chr1:64339752-64339771 None:intergenic 35.0%
! AGGAATATGGGTAATGGTAA+TGG - Chr1:64341751-64341770 MsG0180003572.01.T01:intron 35.0%
! AGTAGTAGTAGCTTTTTGTC+AGG + Chr1:64340596-64340615 None:intergenic 35.0%
! AGTGAGTACTCACGAATTTT+GGG - Chr1:64341677-64341696 MsG0180003572.01.T01:intron 35.0%
! ATGATGTGACGATGTTGATT+AGG - Chr1:64343379-64343398 MsG0180003572.01.T01:intron 35.0%
! ATTGATCTAGTTTATGGAGG+AGG - Chr1:64344336-64344355 MsG0180003572.01.T01:intron 35.0%
! CCACTTGTTCTGTTTTGTAT+TGG + Chr1:64342246-64342265 None:intergenic 35.0%
! CTCGACTTTTATACCACTAT+TGG - Chr1:64341298-64341317 MsG0180003572.01.T01:intron 35.0%
! GTAGTAGTAGCTTTTTGTCA+GGG + Chr1:64340595-64340614 None:intergenic 35.0%
! GTGTGTTTGGGATTTCATAT+GGG + Chr1:64340323-64340342 None:intergenic 35.0%
! TAAGGTATTACGTCATGAGA+GGG - Chr1:64340931-64340950 MsG0180003572.01.T01:intron 35.0%
! TCTATACTATAGTGGTGTTG+AGG + Chr1:64341917-64341936 None:intergenic 35.0%
! TGTGTGTTTGGGATTTCATA+TGG + Chr1:64340324-64340343 None:intergenic 35.0%
! TGTGTTTGGGATTTCATATG+GGG + Chr1:64340322-64340341 None:intergenic 35.0%
! TTTCTGGAAACGAGAGAAAA+AGG - Chr1:64338776-64338795 MsG0180003572.01.T01:intron 35.0%
!! AAGAGTGTCAAAGTTCAAGA+GGG - Chr1:64343806-64343825 MsG0180003572.01.T01:intron 35.0%
!! AGTGTAAATTTTTGAGGGGA+GGG + Chr1:64342714-64342733 None:intergenic 35.0%
!! ATGGGTAATGGTAATGGAAA+GGG - Chr1:64341757-64341776 MsG0180003572.01.T01:intron 35.0%
!! CTCGTGATACTTTAAAATGG+TGG + Chr1:64339190-64339209 None:intergenic 35.0%
!! CTTTTCTGAAAAGTCGCTTA+TGG + Chr1:64340273-64340292 None:intergenic 35.0%
!! TAAGAGTGTCAAAGTTCAAG+AGG - Chr1:64343805-64343824 MsG0180003572.01.T01:intron 35.0%
!! TAGTGTAAATTTTTGAGGGG+AGG + Chr1:64342715-64342734 None:intergenic 35.0%
!! TATGGGTAATGGTAATGGAA+AGG - Chr1:64341756-64341775 MsG0180003572.01.T01:intron 35.0%
!! TCTTCTAGAGCTATTTCTAG+AGG + Chr1:64338870-64338889 None:intergenic 35.0%
!! TGATAACTACTTTTCTTGCC+AGG + Chr1:64343855-64343874 None:intergenic 35.0%
!! TTTATTGGCTCTATGCACAA+TGG + Chr1:64343089-64343108 None:intergenic 35.0%
!!! AGACTTTTAGAACCCTTTCA+AGG - Chr1:64340031-64340050 MsG0180003572.01.T01:intron 35.0%
!!! TTTTTTCCTTTGATGGTGGA+GGG - Chr1:64342111-64342130 MsG0180003572.01.T01:intron 35.0%
!!! TTTTTTTCCTTTGATGGTGG+AGG - Chr1:64342110-64342129 MsG0180003572.01.T01:intron 35.0%
AACAAGTGGAAAGGAGATGA+GGG - Chr1:64342257-64342276 MsG0180003572.01.T01:intron 40.0%
AACGGTTGTGCAAGCAAATA+TGG + Chr1:64341194-64341213 None:intergenic 40.0%
ACGGGGTTGAATATAAGCTA+AGG - Chr1:64340913-64340932 MsG0180003572.01.T01:intron 40.0%
AGAAGCCAGAAAGGCTATAT+TGG - Chr1:64340516-64340535 MsG0180003572.01.T01:intron 40.0%
AGCAGATATGCATCAAAGGA+AGG - Chr1:64345041-64345060 MsG0180003572.01.T01:CDS 40.0%
AGGATCTTGTGTCATGCATT+TGG + Chr1:64343160-64343179 None:intergenic 40.0%
ATAAAAGTCGAGGTTTGGCA+AGG + Chr1:64341290-64341309 None:intergenic 40.0%
ATTCGGAATAATGGTAGGAG+AGG - Chr1:64338671-64338690 MsG0180003572.01.T01:intron 40.0%
ATTTCATATGGGGACTGCTA+TGG + Chr1:64340312-64340331 None:intergenic 40.0%
CATTGGTAAGCAGCTAAAAG+AGG + Chr1:64340851-64340870 None:intergenic 40.0%
CTGTAGCAGATATGCATCAA+AGG - Chr1:64345037-64345056 MsG0180003572.01.T01:CDS 40.0%
GAAGCCAGAAAGGCTATATT+GGG - Chr1:64340517-64340536 MsG0180003572.01.T01:intron 40.0%
GCACTATAATGACTAGTGAC+TGG - Chr1:64342317-64342336 MsG0180003572.01.T01:intron 40.0%
GGAAACGAGAGAAAAAGGAT+TGG - Chr1:64338781-64338800 MsG0180003572.01.T01:intron 40.0%
GGACAAGACAACTATTGTTG+TGG + Chr1:64343436-64343455 None:intergenic 40.0%
GGACACAAGTGAAGTGATAT+AGG - Chr1:64341843-64341862 MsG0180003572.01.T01:intron 40.0%
GTGAATCACAAAATGCAAGG+AGG + Chr1:64342525-64342544 None:intergenic 40.0%
GTGGTATAAAAGTCGAGGTT+TGG + Chr1:64341295-64341314 None:intergenic 40.0%
GTTTCACAAGCTGTTCATGA+TGG - Chr1:64344381-64344400 MsG0180003572.01.T01:intron 40.0%
TAAGTGAAGTTGGATGGATG+AGG - Chr1:64341822-64341841 MsG0180003572.01.T01:intron 40.0%
TAGCTGCAAAAAGGATCCAA+TGG + Chr1:64344989-64345008 None:intergenic 40.0%
TATTACGTCATGAGAGGGTT+TGG - Chr1:64340936-64340955 MsG0180003572.01.T01:intron 40.0%
TCACCGCTACACTATCAAAA+TGG + Chr1:64343534-64343553 None:intergenic 40.0%
TCACTTACTCGACACAACAT+AGG + Chr1:64341809-64341828 None:intergenic 40.0%
TGCTGAAAAGCTATAATGCC+TGG - Chr1:64339805-64339824 MsG0180003572.01.T01:CDS 40.0%
TTCACCAGTTAGCTGCAAAA+AGG + Chr1:64344998-64345017 None:intergenic 40.0%
TTCAGTGGCTTATAATGTGC+TGG - Chr1:64344860-64344879 MsG0180003572.01.T01:intron 40.0%
TTGTGTCGAGTAAGTGAAGT+TGG - Chr1:64341812-64341831 MsG0180003572.01.T01:intron 40.0%
TTTGCAGCTAACTGGTGAAA+CGG - Chr1:64344999-64345018 MsG0180003572.01.T01:CDS 40.0%
! AAGAGGGTTTGTGTCTTTTG+TGG - Chr1:64343822-64343841 MsG0180003572.01.T01:intron 40.0%
! ACTCTTTTGCCATTGCCATT+TGG + Chr1:64340677-64340696 None:intergenic 40.0%
! AGATGCTTTTATTGCCTACC+AGG - Chr1:64345083-64345102 MsG0180003572.01.T01:CDS 40.0%
! ATGGTGGAAGACATGTCATA+GGG - Chr1:64344400-64344419 MsG0180003572.01.T01:intron 40.0%
! ATGTGACGATGTTGATTAGG+CGG - Chr1:64343382-64343401 MsG0180003572.01.T01:intron 40.0%
! CTAAGGTATTACGTCATGAG+AGG - Chr1:64340930-64340949 MsG0180003572.01.T01:intron 40.0%
! CTTTTCAGCAGAATTACCAG+CGG + Chr1:64339795-64339814 None:intergenic 40.0%
! CTTTTCTCACATACCTCTCT+AGG + Chr1:64344578-64344597 None:intergenic 40.0%
! GAGTGAGTACTCACGAATTT+TGG - Chr1:64341676-64341695 MsG0180003572.01.T01:intron 40.0%
! GATGGTGGTCTATACTATAG+TGG + Chr1:64341925-64341944 None:intergenic 40.0%
! GTGAGTACTCACGAATTTTG+GGG - Chr1:64341678-64341697 MsG0180003572.01.T01:intron 40.0%
! TTTTGTGGATGGGGTGAAAA+TGG - Chr1:64343984-64344003 MsG0180003572.01.T01:intron 40.0%
!! AAGCATTGGTCTAATGGGTT+CGG - Chr1:64344359-64344378 MsG0180003572.01.T01:intron 40.0%
!! TAGTACTTCGGTGCCATTAA+TGG + Chr1:64343208-64343227 None:intergenic 40.0%
!! TGGGTAATGGTAATGGAAAG+GGG - Chr1:64341758-64341777 MsG0180003572.01.T01:intron 40.0%
!!! TGGCCATTTTGATAGTGTAG+CGG - Chr1:64343528-64343547 MsG0180003572.01.T01:intron 40.0%
!!! TTTTTCCTTTGATGGTGGAG+GGG - Chr1:64342112-64342131 MsG0180003572.01.T01:intron 40.0%
AAAGCTCGAGAAAATTCCGC+TGG - Chr1:64339776-64339795 MsG0180003572.01.T01:CDS 45.0%
AATCTCCAAGACACGTGAGA+GGG - Chr1:64340451-64340470 MsG0180003572.01.T01:intron 45.0%
ACAAGTGGAAAGGAGATGAG+GGG - Chr1:64342258-64342277 MsG0180003572.01.T01:intron 45.0%
ACATGCAGCGAGTAGTACTT+CGG + Chr1:64343220-64343239 None:intergenic 45.0%
AGAGCAGGAAACACAATCCT+AGG - Chr1:64340126-64340145 MsG0180003572.01.T01:intron 45.0%
ATCGGAAGTCTTCCTTCCAA+GGG + Chr1:64341249-64341268 None:intergenic 45.0%
ATTAGGCGGAACAGAACACA+AGG - Chr1:64343396-64343415 MsG0180003572.01.T01:intron 45.0%
CAAGATGCTGCCATTGAACT+TGG - Chr1:64343873-64343892 MsG0180003572.01.T01:intron 45.0%
CAATCCTTCTAAGCCCCAAA+AGG + Chr1:64339725-64339744 None:intergenic 45.0%
CTCATTCGAACCACCTAGAA+AGG - Chr1:64339370-64339389 MsG0180003572.01.T01:intron 45.0%
CTTTCTAGGTGGTTCGAATG+AGG + Chr1:64339372-64339391 None:intergenic 45.0%
GAACAAGTGGAAAGGAGATG+AGG - Chr1:64342256-64342275 MsG0180003572.01.T01:intron 45.0%
GAAGGAAGACTTCCGATACA+AGG - Chr1:64341252-64341271 MsG0180003572.01.T01:intron 45.0%
GAGCAGGAAACACAATCCTA+GGG - Chr1:64340127-64340146 MsG0180003572.01.T01:intron 45.0%
GATCTCTTGTCCATTGACAC+TGG - Chr1:64344501-64344520 MsG0180003572.01.T01:intron 45.0%
GTCGAGTAAGTGAAGTTGGA+TGG - Chr1:64341816-64341835 MsG0180003572.01.T01:intron 45.0%
GTGTCATGCATTTGGTCCAT+AGG + Chr1:64343152-64343171 None:intergenic 45.0%
TAATCTCCAAGACACGTGAG+AGG - Chr1:64340450-64340469 MsG0180003572.01.T01:intron 45.0%
TAGTAGGTGGCGTTTCACAT+GGG + Chr1:64343306-64343325 None:intergenic 45.0%
TATCGGAAGTCTTCCTTCCA+AGG + Chr1:64341250-64341269 None:intergenic 45.0%
TCACAAGCTGTTCATGATGG+TGG - Chr1:64344384-64344403 MsG0180003572.01.T01:intron 45.0%
TCTCTAGGCATGAGTGTCTT+GGG + Chr1:64344563-64344582 None:intergenic 45.0%
TCTTACGATCCAGAGATCTC+AGG + Chr1:64342596-64342615 None:intergenic 45.0%
TTAGTAGGTGGCGTTTCACA+TGG + Chr1:64343307-64343326 None:intergenic 45.0%
! GGATCCTTTTTGCAGCTAAC+TGG - Chr1:64344991-64345010 MsG0180003572.01.T01:CDS 45.0%
! GTCTTTTGTGGAAGTAGTCC+TGG - Chr1:64343834-64343853 MsG0180003572.01.T01:intron 45.0%
! GTTTATGGAGGAGGAAGCAT+TGG - Chr1:64344345-64344364 MsG0180003572.01.T01:intron 45.0%
! TAATGGCACCGTGCCATTAA+TGG - Chr1:64343192-64343211 MsG0180003572.01.T01:intron 45.0%
!! AGGAGGAAGCATTGGTCTAA+TGG - Chr1:64344353-64344372 MsG0180003572.01.T01:intron 45.0%
!! GATGGTGGAAGACATGTCAT+AGG - Chr1:64344399-64344418 MsG0180003572.01.T01:intron 45.0%
!! GGAGGAAGCATTGGTCTAAT+GGG - Chr1:64344354-64344373 MsG0180003572.01.T01:intron 45.0%
!! TCTTCCTTCCAAGGGTGTTA+AGG + Chr1:64341241-64341260 None:intergenic 45.0%
!!! AGAACCTTTTGGGGCTTAGA+AGG - Chr1:64339718-64339737 MsG0180003572.01.T01:intron 45.0%
!!! TGGCACGGTGCCATTAATTT+TGG + Chr1:64343188-64343207 None:intergenic 45.0%
!!! TTTTCCTTTGATGGTGGAGG+GGG - Chr1:64342113-64342132 MsG0180003572.01.T01:intron 45.0%
!! AATAAAATAAAAAAAAATTG+AGG + Chr1:64342071-64342090 None:intergenic 5.0%
!!! AAATATAAATTTTTGTTTTT+TGG - Chr1:64344132-64344151 MsG0180003572.01.T01:intron 5.0%
!!! ATTTTTATTTTTATGTAAAT+TGG + Chr1:64342650-64342669 None:intergenic 5.0%
!!! TATTTTTTTTTTTATATCTA+TGG - Chr1:64344209-64344228 MsG0180003572.01.T01:intron 5.0%
AAAACCCCCTCCACCATCAA+AGG + Chr1:64342120-64342139 None:intergenic 50.0%
AACCACGTCATGGCCAATAG+TGG + Chr1:64341314-64341333 None:intergenic 50.0%
AGAAGTTAACCAGTGCCCCA+GGG + Chr1:64340874-64340893 None:intergenic 50.0%
AGTTTCGTTGAGTGCGGCAA+CGG + Chr1:64341212-64341231 None:intergenic 50.0%
ATTTGGACACATGTGCAGGG+AGG - Chr1:64343109-64343128 MsG0180003572.01.T01:intron 50.0%
CAAGACACTCATGCCTAGAG+AGG - Chr1:64344562-64344581 MsG0180003572.01.T01:intron 50.0%
CAGCTAACTGGTGAAACGGT+GGG - Chr1:64345003-64345022 MsG0180003572.01.T01:CDS 50.0%
CTCTCTAGGCATGAGTGTCT+TGG + Chr1:64344564-64344583 None:intergenic 50.0%
GCATCAAAGGAAGGCAGAGA+TGG - Chr1:64345050-64345069 MsG0180003572.01.T01:CDS 50.0%
GGCAGGAGTAGGACAAACAT+AGG - Chr1:64340472-64340491 MsG0180003572.01.T01:intron 50.0%
GGGTGGAGAAAGAAGAGATG+AGG - Chr1:64341716-64341735 MsG0180003572.01.T01:intron 50.0%
GGTTTCTTAAGCATGCCCTC+CGG + Chr1:64340748-64340767 None:intergenic 50.0%
GTGTTTCCTGCTCTGATACC+AGG + Chr1:64340120-64340139 None:intergenic 50.0%
GTTTCTTAAGCATGCCCTCC+GGG + Chr1:64340747-64340766 None:intergenic 50.0%
TAAACGCGCATGCAAGCATG+CGG - Chr1:64340356-64340375 MsG0180003572.01.T01:intron 50.0%
TACCACTATTGGCCATGACG+TGG - Chr1:64341309-64341328 MsG0180003572.01.T01:intron 50.0%
TACGTCATGAGAGGGTTTGG+AGG - Chr1:64340939-64340958 MsG0180003572.01.T01:intron 50.0%
TAGCTGCTTACCAATGCCCT+GGG - Chr1:64340855-64340874 MsG0180003572.01.T01:intron 50.0%
TGATCCACTGAACCACGTCA+TGG + Chr1:64341324-64341343 None:intergenic 50.0%
TTAGCTCAGGCTAACCTGGT+AGG + Chr1:64345100-64345119 None:intergenic 50.0%
TTAGCTGCTTACCAATGCCC+TGG - Chr1:64340854-64340873 MsG0180003572.01.T01:intron 50.0%
TTCCTGCTCTGATACCAGGT+TGG + Chr1:64340116-64340135 None:intergenic 50.0%
TTTGGACACATGTGCAGGGA+GGG - Chr1:64343110-64343129 MsG0180003572.01.T01:intron 50.0%
! CTCTGATACCAGGTTGGAGT+GGG + Chr1:64340110-64340129 None:intergenic 50.0%
! TATAAGACGGGCTCACCTGA+CGG - Chr1:64342565-64342584 MsG0180003572.01.T01:intron 50.0%
!! CTTCGGTGCCATTAATGGCA+CGG + Chr1:64343203-64343222 None:intergenic 50.0%
!! GCTTAATAGAGAGTGCCACG+TGG + Chr1:64340250-64340269 None:intergenic 50.0%
!! TCCTTCCAAGGGTGTTAAGG+CGG + Chr1:64341238-64341257 None:intergenic 50.0%
AAACGCGCATGCAAGCATGC+GGG - Chr1:64340357-64340376 MsG0180003572.01.T01:intron 55.0%
AGCTGCTTACCAATGCCCTG+GGG - Chr1:64340856-64340875 MsG0180003572.01.T01:intron 55.0%
CGGGCAAGTTTCGTTGAGTG+CGG + Chr1:64341218-64341237 None:intergenic 55.0%
CTCCAACCTGGTATCAGAGC+AGG - Chr1:64340111-64340130 MsG0180003572.01.T01:intron 55.0%
CTTGTTAACTGGTGCCCGGA+GGG - Chr1:64340730-64340749 MsG0180003572.01.T01:intron 55.0%
GAGAAGTTAACCAGTGCCCC+AGG + Chr1:64340875-64340894 None:intergenic 55.0%
GCAATCGCACGTGAGTGAGT+TGG + Chr1:64343469-64343488 None:intergenic 55.0%
GCAGCTAACTGGTGAAACGG+TGG - Chr1:64345002-64345021 MsG0180003572.01.T01:CDS 55.0%
GCTGAAAACCCACTCCAACC+TGG - Chr1:64340099-64340118 MsG0180003572.01.T01:intron 55.0%
GGTGGCGTTTCACATGGGAA+AGG + Chr1:64343301-64343320 None:intergenic 55.0%
TCTTGTTAACTGGTGCCCGG+AGG - Chr1:64340729-64340748 MsG0180003572.01.T01:intron 55.0%
TTGGCCATGACGTGGTTCAG+TGG - Chr1:64341317-64341336 MsG0180003572.01.T01:intron 55.0%
! ATAAGACGGGCTCACCTGAC+GGG - Chr1:64342566-64342585 MsG0180003572.01.T01:intron 55.0%
! GCTCTGATACCAGGTTGGAG+TGG + Chr1:64340111-64340130 None:intergenic 55.0%
!! CCTTCCAAGGGTGTTAAGGC+GGG + Chr1:64341237-64341256 None:intergenic 55.0%
!! GGGTCTTGTTAACTGGTGCC+CGG - Chr1:64340726-64340745 MsG0180003572.01.T01:intron 55.0%
ACACGTGAGAGGGCAGGAGT+AGG - Chr1:64340461-64340480 MsG0180003572.01.T01:intron 60.0%
ACGGGCTCACCTGAGATCTC+TGG - Chr1:64342584-64342603 MsG0180003572.01.T01:intron 60.0%
AGATCTCAGGTGAGCCCGTC+AGG + Chr1:64342583-64342602 None:intergenic 60.0%
CCCGCCTTAACACCCTTGGA+AGG - Chr1:64341234-64341253 MsG0180003572.01.T01:intron 60.0%
CTTGCCCGCCTTAACACCCT+TGG - Chr1:64341230-64341249 MsG0180003572.01.T01:intron 60.0%
TAACCAGTGCCCCAGGGCAT+TGG + Chr1:64340868-64340887 None:intergenic 60.0%
TCCAAGACACGTGAGAGGGC+AGG - Chr1:64340455-64340474 MsG0180003572.01.T01:intron 60.0%
TCCTGCCCTCTCACGTGTCT+TGG + Chr1:64340459-64340478 None:intergenic 60.0%
TTACCAATGCCCTGGGGCAC+TGG - Chr1:64340862-64340881 MsG0180003572.01.T01:intron 60.0%
! GAGTGAGTTGGAAGCACGCG+CGG + Chr1:64343457-64343476 None:intergenic 60.0%
CGCGCATGCAAGCATGCGGG+AGG - Chr1:64340360-64340379 MsG0180003572.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 64338513 64345119 64338513 ID=MsG0180003572.01;Name=MsG0180003572.01
Chr1 mRNA 64338513 64345119 64338513 ID=MsG0180003572.01.T01;Parent=MsG0180003572.01;Name=MsG0180003572.01.T01;_AED=0.50;_eAED=0.67;_QI=0|0.75|0.4|1|0.75|0.6|5|0|186
Chr1 exon 64344949 64345119 64344949 ID=MsG0180003572.01.T01:exon:23881;Parent=MsG0180003572.01.T01
Chr1 exon 64339727 64339873 64339727 ID=MsG0180003572.01.T01:exon:23880;Parent=MsG0180003572.01.T01
Chr1 exon 64339211 64339308 64339211 ID=MsG0180003572.01.T01:exon:23879;Parent=MsG0180003572.01.T01
Chr1 exon 64339049 64339079 64339049 ID=MsG0180003572.01.T01:exon:23878;Parent=MsG0180003572.01.T01
Chr1 exon 64338513 64338626 64338513 ID=MsG0180003572.01.T01:exon:23877;Parent=MsG0180003572.01.T01
Chr1 CDS 64344949 64345119 64344949 ID=MsG0180003572.01.T01:cds;Parent=MsG0180003572.01.T01
Chr1 CDS 64339727 64339873 64339727 ID=MsG0180003572.01.T01:cds;Parent=MsG0180003572.01.T01
Chr1 CDS 64339211 64339308 64339211 ID=MsG0180003572.01.T01:cds;Parent=MsG0180003572.01.T01
Chr1 CDS 64339049 64339079 64339049 ID=MsG0180003572.01.T01:cds;Parent=MsG0180003572.01.T01
Chr1 CDS 64338513 64338626 64338513 ID=MsG0180003572.01.T01:cds;Parent=MsG0180003572.01.T01
Gene Sequence

>MsG0180003572.01.T01

ATGTCTGAAGTTTCATATTTTGAAGGAACATCTAGTTATCATGCTGATAGCATAATAGATAATAAAATTGAAGAAGCAGATTTTTTAACTGCTGAAGAAAATTTTAAAAGAAAGTTTAGTAAACTTAAGGAATTTCTGTCAAGAAAAAATATTCTAAAATTCGGAATAATGCTTAGTGAGTTGCAAGAAACAAATACAATGGAGACAAATGGTGAGATAAGAGTGTCAAAGTTCAAGAGGGTTTGTGTCTTTTGTGGAAGTAGTCCTGGCAAGAAAAGTAGTTATCAAGATGCTGCCATTGAACTTGGAAATGAATTGGTGTCAAGAAATATTGATCTAGTTTATGGAGGAGGAAGCATTGGTCTAATGGGTTCGGTTTCACAAGCTGTTCATGATGGTGGAAGACATGTCATAGGAGTTATTCCCAAGACACTCATGCCTAGAGAGCTAACTGGTGAAACGGTGGGAGAAGTAAAAGCTGTAGCAGATATGCATCAAAGGAAGGCAGAGATGGCTAAGCATTCAGATGCTTTTATTGCCTACCAGGTTAGCCTGAGCTAA

Protein sequence

>MsG0180003572.01.T01

MSEVSYFEGTSSYHADSIIDNKIEEADFLTAEENFKRKFSKLKEFLSRKNILKFGIMLSELQETNTMETNGEIRVSKFKRVCVFCGSSPGKKSSYQDAAIELGNELVSRNIDLVYGGGSIGLMGSVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIAYQVSLS*