Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028985.01.T01 | XP_003616375.2 | 96.785 | 311 | 10 | 0 | 1 | 311 | 1 | 311 | 0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028985.01.T01 | Q9FJ00 | 53.968 | 189 | 65 | 5 | 130 | 311 | 121 | 294 | 1.16E-53 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028985.01.T01 | G7K1Y5 | 96.785 | 311 | 10 | 0 | 1 | 311 | 1 | 311 | 0.0 | 627 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0580028985.01.T01 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003320.01 | MsG0580028985.01 | 0.811818 | 5.788950e-51 | 3.619478e-48 |
| MsG0480019146.01 | MsG0580028985.01 | 0.808670 | 2.762819e-50 | 1.589275e-47 |
| MsG0480020118.01 | MsG0580028985.01 | 0.861194 | 1.217843e-63 | 3.416893e-60 |
| MsG0480022055.01 | MsG0580028985.01 | 0.800368 | 1.489029e-48 | 6.921300e-46 |
| MsG0580028985.01 | MsG0580029676.01 | 0.804159 | 2.469579e-49 | 1.264234e-46 |
| MsG0580028985.01 | MsG0680034238.01 | 0.803711 | 3.060341e-49 | 1.548630e-46 |
| MsG0580028985.01 | MsG0680034418.01 | 0.815319 | 9.827089e-52 | 6.753112e-49 |
| MsG0580028985.01 | MsG0780037998.01 | 0.803369 | 3.602924e-49 | 1.807268e-46 |
| MsG0580028985.01 | MsG0780038657.01 | 0.819008 | 1.455460e-52 | 1.106866e-49 |
| MsG0580028985.01 | MsG0780040497.01 | 0.831230 | 1.877612e-55 | 2.024951e-52 |
| MsG0580028985.01 | MsG0880042369.01 | 0.803053 | 4.188280e-49 | 2.083935e-46 |
| MsG0280009232.01 | MsG0580028985.01 | 0.807719 | 4.405854e-50 | 2.472014e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028985.01.T01 | MTR_5g079500 | 96.785 | 311 | 10 | 0 | 1 | 311 | 1 | 311 | 0.0 | 627 |
| MsG0580028985.01.T01 | MTR_2g021380 | 93.902 | 82 | 4 | 1 | 18 | 99 | 1 | 81 | 1.27e-46 | 153 |
| MsG0580028985.01.T01 | MTR_3g073460 | 85.714 | 84 | 8 | 3 | 18 | 99 | 1 | 82 | 5.09e-35 | 123 |
| MsG0580028985.01.T01 | MTR_5g005110 | 46.957 | 115 | 47 | 2 | 172 | 286 | 192 | 292 | 2.56e-25 | 103 |
| MsG0580028985.01.T01 | MTR_1g106470 | 50.000 | 94 | 41 | 2 | 197 | 286 | 173 | 264 | 2.21e-24 | 100 |
| MsG0580028985.01.T01 | MTR_1g106460 | 46.667 | 120 | 51 | 3 | 167 | 286 | 200 | 306 | 9.72e-24 | 99.4 |
| MsG0580028985.01.T01 | MTR_3g103030 | 58.571 | 70 | 29 | 0 | 217 | 286 | 228 | 297 | 1.59e-22 | 95.9 |
| MsG0580028985.01.T01 | MTR_1g018090 | 62.903 | 62 | 23 | 0 | 225 | 286 | 281 | 342 | 2.68e-22 | 95.9 |
| MsG0580028985.01.T01 | MTR_8g093500 | 50.000 | 80 | 33 | 1 | 201 | 280 | 104 | 176 | 4.52e-19 | 85.5 |
| MsG0580028985.01.T01 | MTR_3g101810 | 62.500 | 56 | 21 | 0 | 225 | 280 | 178 | 233 | 2.71e-18 | 83.2 |
| MsG0580028985.01.T01 | MTR_1g106480 | 60.345 | 58 | 23 | 0 | 231 | 288 | 82 | 139 | 7.80e-18 | 79.3 |
| MsG0580028985.01.T01 | MTR_7g069590 | 66.038 | 53 | 18 | 0 | 225 | 277 | 33 | 85 | 1.10e-17 | 79.0 |
| MsG0580028985.01.T01 | MTR_4g131160 | 42.453 | 106 | 57 | 1 | 180 | 281 | 154 | 259 | 1.62e-17 | 82.8 |
| MsG0580028985.01.T01 | MTR_4g131160 | 42.453 | 106 | 57 | 1 | 180 | 281 | 157 | 262 | 1.66e-17 | 82.8 |
| MsG0580028985.01.T01 | MTR_1g080890 | 50.769 | 65 | 32 | 0 | 217 | 281 | 192 | 256 | 2.44e-14 | 73.2 |
| MsG0580028985.01.T01 | MTR_5g017210 | 55.696 | 79 | 33 | 1 | 202 | 280 | 123 | 199 | 5.86e-11 | 62.0 |
| MsG0580028985.01.T01 | MTR_2g067000 | 43.421 | 76 | 43 | 0 | 205 | 280 | 144 | 219 | 8.57e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028985.01.T01 | AT5G37800 | 53.968 | 189 | 65 | 5 | 130 | 311 | 121 | 294 | 1.18e-54 | 180 |
| MsG0580028985.01.T01 | AT1G66470 | 62.585 | 147 | 48 | 2 | 163 | 309 | 147 | 286 | 2.80e-51 | 171 |
| MsG0580028985.01.T01 | AT2G14760 | 60.000 | 70 | 28 | 0 | 217 | 286 | 236 | 305 | 4.46e-24 | 100 |
| MsG0580028985.01.T01 | AT4G33880 | 60.000 | 70 | 28 | 0 | 217 | 286 | 265 | 334 | 8.08e-24 | 100 |
| MsG0580028985.01.T01 | AT1G27740 | 54.430 | 79 | 36 | 0 | 208 | 286 | 157 | 235 | 1.70e-23 | 97.4 |
| MsG0580028985.01.T01 | AT5G43175 | 58.442 | 77 | 30 | 1 | 212 | 286 | 124 | 200 | 1.89e-23 | 96.7 |
| MsG0580028985.01.T01 | AT2G14760 | 50.602 | 83 | 28 | 1 | 217 | 286 | 236 | 318 | 1.37e-20 | 90.9 |
| MsG0580028985.01.T01 | AT5G01305 | 57.576 | 66 | 28 | 0 | 212 | 277 | 31 | 96 | 5.28e-20 | 85.9 |
| MsG0580028985.01.T01 | AT2G24260 | 50.000 | 86 | 39 | 1 | 217 | 302 | 34 | 115 | 2.11e-19 | 85.9 |
| MsG0580028985.01.T01 | AT2G24260 | 50.000 | 86 | 39 | 1 | 217 | 302 | 137 | 218 | 1.27e-18 | 85.5 |
| MsG0580028985.01.T01 | AT4G30980 | 40.678 | 118 | 58 | 3 | 184 | 301 | 104 | 209 | 3.00e-18 | 84.0 |
| MsG0580028985.01.T01 | AT4G30980 | 40.678 | 118 | 58 | 3 | 184 | 301 | 152 | 257 | 4.46e-18 | 84.0 |
| MsG0580028985.01.T01 | AT4G00120 | 43.820 | 89 | 48 | 2 | 192 | 280 | 88 | 174 | 9.74e-17 | 77.4 |
| MsG0580028985.01.T01 | AT5G58010 | 50.000 | 72 | 36 | 0 | 210 | 281 | 91 | 162 | 1.07e-16 | 79.3 |
| MsG0580028985.01.T01 | AT3G21330 | 58.929 | 56 | 23 | 0 | 225 | 280 | 276 | 331 | 7.61e-16 | 77.8 |
| MsG0580028985.01.T01 | AT3G50330 | 64.179 | 67 | 22 | 1 | 225 | 291 | 126 | 190 | 1.56e-11 | 63.5 |
| MsG0580028985.01.T01 | AT5G09750 | 51.250 | 80 | 32 | 1 | 201 | 280 | 109 | 181 | 4.29e-11 | 62.0 |
Find 42 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGCAGCTGATGAATTT+TGG | 0.276615 | 5:+89932619 | MsG0580028985.01.T01:CDS |
| TTGCTGCAAATTATTCTCAT+TGG | 0.332794 | 5:-89931472 | None:intergenic |
| CATGGCTTCTTTGCATTGGC+AGG | 0.350562 | 5:-89932048 | None:intergenic |
| CTTGAAGAAGCGATCTTCTA+TGG | 0.360051 | 5:+89931719 | MsG0580028985.01.T01:CDS |
| GATGGTTCACAAAGCACTAA+TGG | 0.373871 | 5:+89931249 | MsG0580028985.01.T01:CDS |
| AATGCAAAAGAGAAGCAAAA+TGG | 0.391258 | 5:+89931594 | MsG0580028985.01.T01:CDS |
| CGTTTGGCACAAGTTCTTGT+AGG | 0.393441 | 5:-89932269 | None:intergenic |
| TCATCATCACAAGGGACATT+TGG | 0.398490 | 5:-89931648 | None:intergenic |
| TTCTTACTTGCAGCTGTGCA+TGG | 0.415931 | 5:-89932066 | None:intergenic |
| TGCTTAGCTTTCAACAGAGC+TGG | 0.417572 | 5:+89931442 | MsG0580028985.01.T01:CDS |
| AAATCTACCTTGGAACCGTT+TGG | 0.425715 | 5:-89932285 | None:intergenic |
| ACCTTGGCAGCAACACTTTG+AGG | 0.436246 | 5:-89932120 | None:intergenic |
| TGTGCATGGCTTCTTTGCAT+TGG | 0.456555 | 5:-89932052 | None:intergenic |
| AGCAACACTTTGAGGATCCT+TGG | 0.463727 | 5:-89932112 | None:intergenic |
| TCCTCAAAGTGTTGCTGCCA+AGG | 0.467735 | 5:+89932119 | MsG0580028985.01.T01:CDS |
| GAAACTTCAAGTGGTAGCTA+TGG | 0.482106 | 5:+89931558 | MsG0580028985.01.T01:CDS |
| ATGAGAATAATTTGCAGCAA+TGG | 0.492330 | 5:+89931475 | MsG0580028985.01.T01:CDS |
| ACAATGTAGAATGTTGTTGT+TGG | 0.495112 | 5:-89931157 | None:intergenic |
| GGTTGATTTGGTTACTATGT+TGG | 0.497594 | 5:+89932421 | MsG0580028985.01.T01:intron |
| TCTCCTACTCTATGCAGAAA+AGG | 0.510749 | 5:+89931312 | MsG0580028985.01.T01:CDS |
| GAGTCTTTGATTAATTTCAA+AGG | 0.522051 | 5:+89931375 | MsG0580028985.01.T01:CDS |
| ACAAATTTGTGCATGGTGCA+AGG | 0.524955 | 5:+89931522 | MsG0580028985.01.T01:CDS |
| ACACTTTGAGGATCCTTGGA+TGG | 0.541193 | 5:-89932108 | None:intergenic |
| CTACAAGAACTTGTGCCAAA+CGG | 0.551928 | 5:+89932270 | MsG0580028985.01.T01:CDS |
| GTTTCTTCAGTTGCAAGTGA+AGG | 0.554782 | 5:+89932466 | MsG0580028985.01.T01:CDS |
| TGATGATAGCTTAATAAAAG+AGG | 0.558766 | 5:+89931677 | MsG0580028985.01.T01:CDS |
| GGTGGAAAAGCTCCTGACAT+TGG | 0.579618 | 5:+89932651 | MsG0580028985.01.T01:CDS |
| TAGCTTTCAACAGAGCTGGA+TGG | 0.582750 | 5:+89931446 | MsG0580028985.01.T01:CDS |
| AGAAGATCGCTTCTTCAAGA+CGG | 0.585959 | 5:-89931715 | None:intergenic |
| ACTTGTGCCAAACGGTTCCA+AGG | 0.588357 | 5:+89932278 | MsG0580028985.01.T01:CDS |
| CAAAATGGTGAAAGTTCATG+TGG | 0.590862 | 5:+89931609 | MsG0580028985.01.T01:CDS |
| AATAGCTTTGAAACTTCAAG+TGG | 0.597044 | 5:+89931549 | MsG0580028985.01.T01:CDS |
| TAGAGTAGGAGAATTTGTAA+TGG | 0.598886 | 5:-89931301 | None:intergenic |
| AAGTAACACAAATTTGTGCA+TGG | 0.601950 | 5:+89931515 | MsG0580028985.01.T01:CDS |
| ACATAAGTCAAATCCATCCA+AGG | 0.604373 | 5:+89932095 | MsG0580028985.01.T01:CDS |
| TCTATGATTGAAGAAGAAGA+TGG | 0.607243 | 5:+89931231 | MsG0580028985.01.T01:CDS |
| ATGGTGAAAGTTCATGTGGA+TGG | 0.618317 | 5:+89931613 | MsG0580028985.01.T01:CDS |
| GAAGAGAGAGAATAAGTGAG+AGG | 0.626364 | 5:+89932238 | MsG0580028985.01.T01:CDS |
| TCATCGTCGTCATCATCACA+AGG | 0.632243 | 5:-89931657 | None:intergenic |
| TATTACAACAATCTCATGCA+AGG | 0.641770 | 5:+89931408 | MsG0580028985.01.T01:CDS |
| TGATAGCTTAATAAAAGAGG+CGG | 0.653073 | 5:+89931680 | MsG0580028985.01.T01:CDS |
| CATCGTCGTCATCATCACAA+GGG | 0.736454 | 5:-89931656 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTAATAAAATTAA+CGG | - | Chr5:89931924-89931943 | None:intergenic | 0.0% |
| !! | CAAATTATTAGAACATATTT+AGG | + | Chr5:89931944-89931963 | MsG0580028985.01.T01:intron | 15.0% |
| !! | AATCAAAACATGATATAACT+TGG | - | Chr5:89932157-89932176 | None:intergenic | 20.0% |
| !! | ATCAAAACATGATATAACTT+GGG | - | Chr5:89932156-89932175 | None:intergenic | 20.0% |
| !! | GTAAAAATTTACAAAGACTT+TGG | - | Chr5:89932362-89932381 | None:intergenic | 20.0% |
| !!! | TTTTGTTCTATATTTGTTCA+TGG | + | Chr5:89932590-89932609 | MsG0580028985.01.T01:intron | 20.0% |
| ! | ACTAATTTGAAAATCTACCT+TGG | - | Chr5:89932298-89932317 | None:intergenic | 25.0% |
| ! | AGCAAAATCTATTACCATTT+AGG | + | Chr5:89931763-89931782 | MsG0580028985.01.T01:intron | 25.0% |
| ! | GAGTACTTAATGAAATAGAA+TGG | + | Chr5:89931978-89931997 | MsG0580028985.01.T01:intron | 25.0% |
| ! | GAGTCTTTGATTAATTTCAA+AGG | + | Chr5:89931375-89931394 | MsG0580028985.01.T01:CDS | 25.0% |
| ! | TAGAATGGAAAATTGAGATA+AGG | + | Chr5:89931993-89932012 | MsG0580028985.01.T01:intron | 25.0% |
| ! | TGATGATAGCTTAATAAAAG+AGG | + | Chr5:89931677-89931696 | MsG0580028985.01.T01:CDS | 25.0% |
| ! | TTTATCAAATTAGTCCTTGA+AGG | - | Chr5:89932523-89932542 | None:intergenic | 25.0% |
| !! | AAGGTTTGTTTGTGTTTATA+GGG | + | Chr5:89932012-89932031 | MsG0580028985.01.T01:intron | 25.0% |
| !! | CTCTTTTGCATTATTGAATA+TGG | - | Chr5:89931586-89931605 | None:intergenic | 25.0% |
| !! | TAAGGTTTGTTTGTGTTTAT+AGG | + | Chr5:89932011-89932030 | MsG0580028985.01.T01:intron | 25.0% |
| !!! | CACAAATTTGTGTTACTTTT+AGG | - | Chr5:89931513-89931532 | None:intergenic | 25.0% |
| AAGAAAGCAACATAACTTTG+AGG | - | Chr5:89932321-89932340 | None:intergenic | 30.0% | |
| AAGTAACACAAATTTGTGCA+TGG | + | Chr5:89931515-89931534 | MsG0580028985.01.T01:CDS | 30.0% | |
| AATGCAAAAGAGAAGCAAAA+TGG | + | Chr5:89931594-89931613 | MsG0580028985.01.T01:CDS | 30.0% | |
| AATTTACAAAGACTTTGGCT+TGG | - | Chr5:89932357-89932376 | None:intergenic | 30.0% | |
| ACAATGTAGAATGTTGTTGT+TGG | - | Chr5:89931160-89931179 | None:intergenic | 30.0% | |
| ATGACTCTAAACATCCTAAA+TGG | - | Chr5:89931780-89931799 | None:intergenic | 30.0% | |
| CTTTAGCACAAATACTCAAT+TGG | + | Chr5:89932494-89932513 | MsG0580028985.01.T01:intron | 30.0% | |
| TAGAGTAGGAGAATTTGTAA+TGG | - | Chr5:89931304-89931323 | None:intergenic | 30.0% | |
| TATTACAACAATCTCATGCA+AGG | + | Chr5:89931408-89931427 | MsG0580028985.01.T01:CDS | 30.0% | |
| TCTATATTTGTTCATGGTGT+AGG | + | Chr5:89932596-89932615 | MsG0580028985.01.T01:intron | 30.0% | |
| TCTATGATTGAAGAAGAAGA+TGG | + | Chr5:89931231-89931250 | MsG0580028985.01.T01:CDS | 30.0% | |
| TGATAGCTTAATAAAAGAGG+CGG | + | Chr5:89931680-89931699 | MsG0580028985.01.T01:CDS | 30.0% | |
| TTGCTGCAAATTATTCTCAT+TGG | - | Chr5:89931475-89931494 | None:intergenic | 30.0% | |
| ! | AGGTTTGTTTGTGTTTATAG+GGG | + | Chr5:89932013-89932032 | MsG0580028985.01.T01:intron | 30.0% |
| ! | ATGAGAATAATTTGCAGCAA+TGG | + | Chr5:89931475-89931494 | MsG0580028985.01.T01:CDS | 30.0% |
| ! | ATTCTAATGATGACTTTTGC+AGG | + | Chr5:89932400-89932419 | MsG0580028985.01.T01:intron | 30.0% |
| !! | AATAGCTTTGAAACTTCAAG+TGG | + | Chr5:89931549-89931568 | MsG0580028985.01.T01:CDS | 30.0% |
| !! | TATTTTTGACGAGACTACTA+TGG | + | Chr5:89931179-89931198 | MsG0580028985.01.T01:CDS | 30.0% |
| ACATAAGTCAAATCCATCCA+AGG | + | Chr5:89932095-89932114 | MsG0580028985.01.T01:CDS | 35.0% | |
| CAAAATGGTGAAAGTTCATG+TGG | + | Chr5:89931609-89931628 | MsG0580028985.01.T01:CDS | 35.0% | |
| CAGTTATGTGCAATATATCG+AGG | - | Chr5:89931838-89931857 | None:intergenic | 35.0% | |
| GTTTGTTTGTGTTTATAGGG+GGG | + | Chr5:89932015-89932034 | MsG0580028985.01.T01:intron | 35.0% | |
| TACTCAATTGGAAACCTTCA+AGG | + | Chr5:89932506-89932525 | MsG0580028985.01.T01:intron | 35.0% | |
| ! | GGTTTGTTTGTGTTTATAGG+GGG | + | Chr5:89932014-89932033 | MsG0580028985.01.T01:intron | 35.0% |
| ! | TGTTTTACTTGACCAATGTC+AGG | - | Chr5:89932666-89932685 | None:intergenic | 35.0% |
| !! | GGTTGATTTGGTTACTATGT+TGG | + | Chr5:89932421-89932440 | MsG0580028985.01.T01:intron | 35.0% |
| !!! | ATGACTTTTGCAGGTTGATT+TGG | + | Chr5:89932409-89932428 | MsG0580028985.01.T01:intron | 35.0% |
| AAATCTACCTTGGAACCGTT+TGG | - | Chr5:89932288-89932307 | None:intergenic | 40.0% | |
| ACAAATTTGTGCATGGTGCA+AGG | + | Chr5:89931522-89931541 | MsG0580028985.01.T01:CDS | 40.0% | |
| AGAAGATCGCTTCTTCAAGA+CGG | - | Chr5:89931718-89931737 | None:intergenic | 40.0% | |
| ATGGTGAAAGTTCATGTGGA+TGG | + | Chr5:89931613-89931632 | MsG0580028985.01.T01:CDS | 40.0% | |
| CTACAAGAACTTGTGCCAAA+CGG | + | Chr5:89932270-89932289 | MsG0580028985.01.T01:CDS | 40.0% | |
| CTTGAAGAAGCGATCTTCTA+TGG | + | Chr5:89931719-89931738 | MsG0580028985.01.T01:CDS | 40.0% | |
| GAAACTTCAAGTGGTAGCTA+TGG | + | Chr5:89931558-89931577 | MsG0580028985.01.T01:CDS | 40.0% | |
| GAAGAGAGAGAATAAGTGAG+AGG | + | Chr5:89932238-89932257 | MsG0580028985.01.T01:CDS | 40.0% | |
| GCACATAACTGCAGTCAAAT+GGG | + | Chr5:89931847-89931866 | MsG0580028985.01.T01:intron | 40.0% | |
| GTTTCTTCAGTTGCAAGTGA+AGG | + | Chr5:89932466-89932485 | MsG0580028985.01.T01:CDS | 40.0% | |
| TCATCATCACAAGGGACATT+TGG | - | Chr5:89931651-89931670 | None:intergenic | 40.0% | |
| TCTCCTACTCTATGCAGAAA+AGG | + | Chr5:89931312-89931331 | MsG0580028985.01.T01:CDS | 40.0% | |
| TGCACATAACTGCAGTCAAA+TGG | + | Chr5:89931846-89931865 | MsG0580028985.01.T01:intron | 40.0% | |
| TTTGTTCATGGTGTAGGTGT+TGG | + | Chr5:89932602-89932621 | MsG0580028985.01.T01:intron | 40.0% | |
| ! | GATGGTTCACAAAGCACTAA+TGG | + | Chr5:89931249-89931268 | MsG0580028985.01.T01:CDS | 40.0% |
| ! | TGACCTTTTCTGCATAGAGT+AGG | - | Chr5:89931318-89931337 | None:intergenic | 40.0% |
| ! | TGTTGGCAGCTGATGAATTT+TGG | + | Chr5:89932619-89932638 | MsG0580028985.01.T01:CDS | 40.0% |
| !! | GATGAATTTTGGCCTGTCAA+TGG | + | Chr5:89932630-89932649 | MsG0580028985.01.T01:CDS | 40.0% |
| AACTGCAGTCAAATGGGTCA+CGG | + | Chr5:89931853-89931872 | MsG0580028985.01.T01:intron | 45.0% | |
| CATCGTCGTCATCATCACAA+GGG | - | Chr5:89931659-89931678 | None:intergenic | 45.0% | |
| CGTTTGGCACAAGTTCTTGT+AGG | - | Chr5:89932272-89932291 | None:intergenic | 45.0% | |
| TAGCTTTCAACAGAGCTGGA+TGG | + | Chr5:89931446-89931465 | MsG0580028985.01.T01:CDS | 45.0% | |
| TCATCGTCGTCATCATCACA+AGG | - | Chr5:89931660-89931679 | None:intergenic | 45.0% | |
| TGTGCATGGCTTCTTTGCAT+TGG | - | Chr5:89932055-89932074 | None:intergenic | 45.0% | |
| TTCTTACTTGCAGCTGTGCA+TGG | - | Chr5:89932069-89932088 | None:intergenic | 45.0% | |
| ! | ACACTTTGAGGATCCTTGGA+TGG | - | Chr5:89932111-89932130 | None:intergenic | 45.0% |
| ! | AGCAACACTTTGAGGATCCT+TGG | - | Chr5:89932115-89932134 | None:intergenic | 45.0% |
| ! | CTTGGGTTTGAAGCAAACCT+TGG | - | Chr5:89932139-89932158 | None:intergenic | 45.0% |
| ! | TGATGTTTCTGTCCTGATCG+CGG | + | Chr5:89931891-89931910 | MsG0580028985.01.T01:intron | 45.0% |
| ! | TGCTTAGCTTTCAACAGAGC+TGG | + | Chr5:89931442-89931461 | MsG0580028985.01.T01:CDS | 45.0% |
| !! | GAATTTTGGCCTGTCAATGG+TGG | + | Chr5:89932633-89932652 | MsG0580028985.01.T01:CDS | 45.0% |
| !!! | GATAAATTATTAATATTTTA+GGG | + | Chr5:89932537-89932556 | MsG0580028985.01.T01:intron | 5.0% |
| !!! | TGATAAATTATTAATATTTT+AGG | + | Chr5:89932536-89932555 | MsG0580028985.01.T01:intron | 5.0% |
| ACCTTGGCAGCAACACTTTG+AGG | - | Chr5:89932123-89932142 | None:intergenic | 50.0% | |
| ACTTGTGCCAAACGGTTCCA+AGG | + | Chr5:89932278-89932297 | MsG0580028985.01.T01:CDS | 50.0% | |
| GGTGGAAAAGCTCCTGACAT+TGG | + | Chr5:89932651-89932670 | MsG0580028985.01.T01:CDS | 50.0% | |
| ! | CATGGCTTCTTTGCATTGGC+AGG | - | Chr5:89932051-89932070 | None:intergenic | 50.0% |
| ! | GGAGCTTTTCCACCATTGAC+AGG | - | Chr5:89932645-89932664 | None:intergenic | 50.0% |
| !! | TCCTCAAAGTGTTGCTGCCA+AGG | + | Chr5:89932119-89932138 | MsG0580028985.01.T01:CDS | 50.0% |
| AACGGTCTGCAACCGCGATC+AGG | - | Chr5:89931906-89931925 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 89931147 | 89932719 | 89931147 | ID=MsG0580028985.01;Name=MsG0580028985.01 |
| Chr5 | mRNA | 89931147 | 89932719 | 89931147 | ID=MsG0580028985.01.T01;Parent=MsG0580028985.01;Name=MsG0580028985.01.T01;_AED=0.10;_eAED=0.12;_QI=0|0|0|1|1|1|5|0|311 |
| Chr5 | exon | 89931147 | 89931740 | 89931147 | ID=MsG0580028985.01.T01:exon:17542;Parent=MsG0580028985.01.T01 |
| Chr5 | exon | 89932033 | 89932140 | 89932033 | ID=MsG0580028985.01.T01:exon:17543;Parent=MsG0580028985.01.T01 |
| Chr5 | exon | 89932234 | 89932299 | 89932234 | ID=MsG0580028985.01.T01:exon:17544;Parent=MsG0580028985.01.T01 |
| Chr5 | exon | 89932422 | 89932487 | 89932422 | ID=MsG0580028985.01.T01:exon:17545;Parent=MsG0580028985.01.T01 |
| Chr5 | exon | 89932618 | 89932719 | 89932618 | ID=MsG0580028985.01.T01:exon:17546;Parent=MsG0580028985.01.T01 |
| Chr5 | CDS | 89931147 | 89931740 | 89931147 | ID=MsG0580028985.01.T01:cds;Parent=MsG0580028985.01.T01 |
| Chr5 | CDS | 89932033 | 89932140 | 89932033 | ID=MsG0580028985.01.T01:cds;Parent=MsG0580028985.01.T01 |
| Chr5 | CDS | 89932234 | 89932299 | 89932234 | ID=MsG0580028985.01.T01:cds;Parent=MsG0580028985.01.T01 |
| Chr5 | CDS | 89932422 | 89932487 | 89932422 | ID=MsG0580028985.01.T01:cds;Parent=MsG0580028985.01.T01 |
| Chr5 | CDS | 89932618 | 89932719 | 89932618 | ID=MsG0580028985.01.T01:cds;Parent=MsG0580028985.01.T01 |
| Gene Sequence |
| Protein sequence |
