Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042369.01.T01 | AET01513.1 | 81.789 | 313 | 17 | 2 | 1 | 313 | 10 | 282 | 0 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042369.01.T01 | Q8L5A7 | 49.544 | 329 | 157 | 4 | 4 | 329 | 29 | 351 | 9.83E-118 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042369.01.T01 | G7LGN3 | 81.789 | 313 | 17 | 2 | 1 | 313 | 10 | 282 | 0.0 | 511 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048134.01 | MsG0880042369.01 | 0.834072 | 3.701784e-56 | 4.344907e-53 |
| MsG0180001008.01 | MsG0880042369.01 | 0.839943 | 1.171128e-57 | 1.642803e-54 |
| MsG0180001027.01 | MsG0880042369.01 | 0.816240 | 6.123352e-52 | 4.315523e-49 |
| MsG0180003320.01 | MsG0880042369.01 | 0.814247 | 1.697890e-51 | 1.133395e-48 |
| MsG0180005572.01 | MsG0880042369.01 | 0.800764 | 1.236904e-48 | 5.806997e-46 |
| MsG0780040497.01 | MsG0880042369.01 | 0.872583 | 2.844211e-67 | 1.196660e-63 |
| MsG0780040498.01 | MsG0880042369.01 | 0.827888 | 1.219925e-54 | 1.193250e-51 |
| MsG0780041248.01 | MsG0880042369.01 | 0.808543 | 2.941020e-50 | 1.686230e-47 |
| MsG0880041977.01 | MsG0880042369.01 | 0.806806 | 6.879821e-50 | 3.769591e-47 |
| MsG0880042369.01 | MsG0880045854.01 | 0.809777 | 1.599647e-50 | 9.477552e-48 |
| MsG0880042369.01 | MsG0880046273.01 | 0.802693 | 4.969660e-49 | 2.450279e-46 |
| MsG0880042369.01 | MsG0880047383.01 | 0.829078 | 6.296109e-55 | 6.375594e-52 |
| MsG0680031474.01 | MsG0880042369.01 | 0.808062 | 3.723966e-50 | 2.108287e-47 |
| MsG0680033467.01 | MsG0880042369.01 | 0.815866 | 7.422748e-52 | 5.177808e-49 |
| MsG0680034418.01 | MsG0880042369.01 | 0.856601 | 2.880566e-62 | 6.913028e-59 |
| MsG0680034728.01 | MsG0880042369.01 | 0.821208 | 4.562251e-53 | 3.688187e-50 |
| MsG0480019024.01 | MsG0880042369.01 | 0.820283 | 7.442222e-53 | 5.863460e-50 |
| MsG0480019146.01 | MsG0880042369.01 | 0.844686 | 6.483811e-59 | 1.054934e-55 |
| MsG0480020118.01 | MsG0880042369.01 | 0.809045 | 2.297201e-50 | 1.334681e-47 |
| MsG0480022055.01 | MsG0880042369.01 | 0.812763 | 3.599231e-51 | 2.308079e-48 |
| MsG0480022886.01 | MsG0880042369.01 | 0.805173 | 1.516656e-49 | 7.969612e-47 |
| MsG0580024087.01 | MsG0880042369.01 | 0.802037 | 6.783885e-49 | 3.289295e-46 |
| MsG0580024840.01 | MsG0880042369.01 | 0.803490 | 3.400349e-49 | 1.711066e-46 |
| MsG0580025432.01 | MsG0880042369.01 | 0.803444 | 3.475853e-49 | 1.746955e-46 |
| MsG0380016299.01 | MsG0880042369.01 | 0.839692 | 1.360896e-57 | 1.893963e-54 |
| MsG0380017901.01 | MsG0880042369.01 | 0.821535 | 3.833947e-53 | 3.127573e-50 |
| MsG0480018440.01 | MsG0880042369.01 | 0.801617 | 8.276082e-49 | 3.970042e-46 |
| MsG0580026521.01 | MsG0880042369.01 | 0.804219 | 2.399591e-49 | 1.230250e-46 |
| MsG0580027337.01 | MsG0880042369.01 | 0.800225 | 1.592400e-48 | 7.374724e-46 |
| MsG0580027752.01 | MsG0880042369.01 | 0.801420 | 9.082551e-49 | 4.335461e-46 |
| MsG0580027753.01 | MsG0880042369.01 | 0.809524 | 1.813485e-50 | 1.067182e-47 |
| MsG0580028985.01 | MsG0880042369.01 | 0.803053 | 4.188280e-49 | 2.083935e-46 |
| MsG0580029359.01 | MsG0880042369.01 | 0.800912 | 1.153537e-48 | 5.436428e-46 |
| MsG0580029676.01 | MsG0880042369.01 | 0.809023 | 2.322223e-50 | 1.348361e-47 |
| MsG0580029938.01 | MsG0880042369.01 | 0.805092 | 1.577575e-49 | 8.272249e-47 |
| MsG0280006546.01 | MsG0880042369.01 | 0.800923 | 1.147620e-48 | 5.409963e-46 |
| MsG0280007922.01 | MsG0880042369.01 | 0.810181 | 1.309581e-50 | 7.840573e-48 |
| MsG0280009112.01 | MsG0880042369.01 | 0.806360 | 8.543287e-50 | 4.627703e-47 |
| MsG0280009232.01 | MsG0880042369.01 | 0.852259 | 5.192116e-61 | 1.078789e-57 |
| MsG0780036649.01 | MsG0880042369.01 | 0.832097 | 1.148173e-55 | 1.270418e-52 |
| MsG0780036839.01 | MsG0880042369.01 | 0.843520 | 1.331960e-58 | 2.089393e-55 |
| MsG0780038519.01 | MsG0880042369.01 | 0.813914 | 2.010564e-51 | 1.330015e-48 |
| MsG0780039883.01 | MsG0880042369.01 | 0.803758 | 2.992468e-49 | 1.516205e-46 |
| MsG0780039949.01 | MsG0880042369.01 | 0.816072 | 6.675988e-52 | 4.683551e-49 |
| MsG0780039979.01 | MsG0880042369.01 | 0.801751 | 7.768190e-49 | 3.739102e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042369.01.T01 | MTR_8g014380 | 81.789 | 313 | 17 | 2 | 1 | 313 | 10 | 282 | 0.0 | 511 |
| MsG0880042369.01.T01 | MTR_8g040520 | 68.955 | 335 | 98 | 5 | 3 | 335 | 12 | 342 | 2.79e-161 | 454 |
| MsG0880042369.01.T01 | MTR_7g007710 | 68.196 | 327 | 99 | 2 | 3 | 329 | 6 | 327 | 1.59e-156 | 442 |
| MsG0880042369.01.T01 | MTR_8g040820 | 65.957 | 329 | 109 | 3 | 3 | 329 | 12 | 339 | 2.61e-154 | 437 |
| MsG0880042369.01.T01 | MTR_8g035720 | 62.682 | 343 | 113 | 3 | 1 | 329 | 60 | 401 | 1.92e-151 | 432 |
| MsG0880042369.01.T01 | MTR_7g007680 | 65.957 | 329 | 106 | 2 | 1 | 329 | 6 | 328 | 4.66e-151 | 429 |
| MsG0880042369.01.T01 | MTR_8g040490 | 65.350 | 329 | 110 | 4 | 3 | 329 | 12 | 338 | 2.82e-150 | 428 |
| MsG0880042369.01.T01 | MTR_8g040430 | 61.702 | 329 | 124 | 2 | 3 | 329 | 12 | 340 | 1.37e-144 | 412 |
| MsG0880042369.01.T01 | MTR_3g013500 | 62.264 | 318 | 114 | 4 | 13 | 329 | 20 | 332 | 1.27e-138 | 397 |
| MsG0880042369.01.T01 | MTR_8g041790 | 63.914 | 327 | 98 | 3 | 4 | 329 | 13 | 320 | 8.20e-137 | 392 |
| MsG0880042369.01.T01 | MTR_8g040250 | 58.491 | 318 | 98 | 4 | 13 | 329 | 6 | 290 | 3.06e-120 | 348 |
| MsG0880042369.01.T01 | MTR_3g435130 | 47.112 | 329 | 167 | 4 | 1 | 327 | 4 | 327 | 1.76e-106 | 315 |
| MsG0880042369.01.T01 | MTR_8g066220 | 49.206 | 315 | 154 | 4 | 13 | 326 | 16 | 325 | 5.29e-106 | 313 |
| MsG0880042369.01.T01 | MTR_0071s0010 | 48.896 | 317 | 155 | 4 | 13 | 327 | 15 | 326 | 3.31e-104 | 309 |
| MsG0880042369.01.T01 | MTR_3g046670 | 48.896 | 317 | 155 | 4 | 13 | 327 | 15 | 326 | 3.31e-104 | 309 |
| MsG0880042369.01.T01 | MTR_8g040820 | 64.953 | 214 | 75 | 0 | 116 | 329 | 27 | 240 | 4.64e-97 | 288 |
| MsG0880042369.01.T01 | MTR_8g066210 | 45.886 | 316 | 150 | 4 | 13 | 327 | 16 | 311 | 4.51e-95 | 285 |
| MsG0880042369.01.T01 | MTR_8g040430 | 62.150 | 214 | 81 | 0 | 116 | 329 | 27 | 240 | 6.13e-93 | 277 |
| MsG0880042369.01.T01 | MTR_8g040730 | 65.714 | 175 | 51 | 4 | 1 | 175 | 330 | 495 | 1.88e-68 | 223 |
| MsG0880042369.01.T01 | MTR_8g040730 | 54.237 | 236 | 60 | 7 | 1 | 234 | 7 | 196 | 7.23e-68 | 222 |
| MsG0880042369.01.T01 | MTR_8g040710 | 68.707 | 147 | 45 | 1 | 179 | 324 | 136 | 282 | 2.30e-64 | 205 |
| MsG0880042369.01.T01 | MTR_8g066280 | 51.913 | 183 | 87 | 1 | 146 | 328 | 22 | 203 | 1.11e-61 | 196 |
| MsG0880042369.01.T01 | MTR_3g434790 | 46.486 | 185 | 98 | 1 | 142 | 326 | 43 | 226 | 2.09e-53 | 176 |
| MsG0880042369.01.T01 | MTR_8g040315 | 64.463 | 121 | 42 | 1 | 209 | 329 | 8 | 127 | 4.91e-41 | 140 |
| MsG0880042369.01.T01 | MTR_8g040410 | 61.667 | 60 | 20 | 1 | 64 | 120 | 21 | 80 | 1.79e-17 | 78.6 |
| MsG0880042369.01.T01 | MTR_8g040410 | 47.191 | 89 | 29 | 1 | 218 | 306 | 75 | 145 | 1.90e-17 | 78.6 |
| MsG0880042369.01.T01 | MTR_8g066190 | 39.604 | 101 | 43 | 1 | 228 | 328 | 4 | 86 | 3.17e-14 | 67.8 |
| MsG0880042369.01.T01 | MTR_8g038710 | 69.565 | 46 | 13 | 1 | 131 | 175 | 11 | 56 | 8.43e-14 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042369.01.T01 | AT5G07010 | 49.544 | 329 | 157 | 4 | 4 | 329 | 29 | 351 | 1.00e-118 | 347 |
| MsG0880042369.01.T01 | AT5G07000 | 49.846 | 325 | 152 | 5 | 10 | 329 | 21 | 339 | 2.62e-113 | 333 |
| MsG0880042369.01.T01 | AT3G45070 | 44.904 | 314 | 167 | 4 | 15 | 327 | 13 | 321 | 7.69e-90 | 272 |
| MsG0880042369.01.T01 | AT3G45070 | 44.904 | 314 | 167 | 4 | 15 | 327 | 8 | 316 | 7.89e-90 | 272 |
| MsG0880042369.01.T01 | AT3G45070 | 44.904 | 314 | 167 | 4 | 15 | 327 | 40 | 348 | 1.73e-89 | 272 |
| MsG0880042369.01.T01 | AT5G43690 | 42.056 | 321 | 178 | 4 | 12 | 329 | 11 | 326 | 5.07e-89 | 270 |
| MsG0880042369.01.T01 | AT1G18590 | 42.284 | 324 | 172 | 5 | 12 | 329 | 24 | 338 | 2.12e-85 | 261 |
| MsG0880042369.01.T01 | AT1G13420 | 43.226 | 310 | 165 | 5 | 22 | 329 | 26 | 326 | 4.03e-85 | 260 |
| MsG0880042369.01.T01 | AT2G03770 | 42.902 | 317 | 167 | 5 | 14 | 329 | 14 | 317 | 4.20e-85 | 260 |
| MsG0880042369.01.T01 | AT3G45080 | 42.902 | 317 | 174 | 5 | 13 | 327 | 11 | 322 | 2.46e-81 | 250 |
| MsG0880042369.01.T01 | AT1G74100 | 39.628 | 323 | 180 | 6 | 10 | 326 | 14 | 327 | 1.17e-77 | 241 |
| MsG0880042369.01.T01 | AT2G03760 | 43.533 | 317 | 166 | 5 | 15 | 329 | 14 | 319 | 2.04e-77 | 240 |
| MsG0880042369.01.T01 | AT2G14920 | 40.514 | 311 | 178 | 6 | 22 | 329 | 22 | 328 | 1.42e-75 | 236 |
| MsG0880042369.01.T01 | AT2G03750 | 39.375 | 320 | 178 | 7 | 13 | 327 | 35 | 343 | 1.20e-74 | 234 |
| MsG0880042369.01.T01 | AT1G28170 | 42.122 | 311 | 166 | 6 | 24 | 329 | 20 | 321 | 7.30e-73 | 229 |
| MsG0880042369.01.T01 | AT4G26280 | 38.679 | 318 | 169 | 4 | 13 | 327 | 8 | 302 | 1.24e-72 | 228 |
| MsG0880042369.01.T01 | AT1G74090 | 38.769 | 325 | 186 | 5 | 10 | 329 | 26 | 342 | 4.91e-71 | 224 |
| MsG0880042369.01.T01 | AT1G13430 | 40.741 | 324 | 173 | 7 | 22 | 329 | 26 | 346 | 1.87e-69 | 221 |
| MsG0880042369.01.T01 | AT2G27570 | 36.076 | 316 | 141 | 5 | 13 | 327 | 11 | 266 | 9.51e-61 | 196 |
Find 54 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTGAATACAATGTTTA+TGG | 0.114920 | 8:-7691773 | MsG0880042369.01.T01:CDS |
| CTCTCACTTCCTAGAATAAA+AGG | 0.164874 | 8:-7692040 | MsG0880042369.01.T01:CDS |
| TAAGTCCATTTGGTTCATTT+TGG | 0.191898 | 8:-7691502 | MsG0880042369.01.T01:CDS |
| AACCAAGTTGTGCCGGATTT+TGG | 0.212430 | 8:+7691890 | None:intergenic |
| CTTCTTGTCCATCCCTTGAT+TGG | 0.256892 | 8:+7692107 | None:intergenic |
| CCATCGTTTCTCTTCCTTAG+AGG | 0.272409 | 8:-7691837 | MsG0880042369.01.T01:CDS |
| AACAACAATATCATTGTCTT+TGG | 0.276447 | 8:+7691922 | None:intergenic |
| CTCTCCTCTTCTCTAGTAAA+AGG | 0.283220 | 8:+7691353 | None:intergenic |
| GGATTAACTGCTTAAATTCA+TGG | 0.322746 | 8:+7692062 | None:intergenic |
| CATGGTTTACCTTGTCTTGT+TGG | 0.323860 | 8:+7692080 | None:intergenic |
| GAAAGGCAGAAGTAGGAGAT+TGG | 0.371537 | 8:-7691217 | MsG0880042369.01.T01:CDS |
| TTGGTTCATTCATGTTTGAT+AGG | 0.385655 | 8:+7691720 | None:intergenic |
| AAATTATCTTTCTCCTTCAA+TGG | 0.395279 | 8:-7691192 | MsG0880042369.01.T01:CDS |
| ATAGGTTGGATTAAATTTGA+TGG | 0.396304 | 8:+7691971 | None:intergenic |
| ATAGGTTGATTTGAAAACTT+TGG | 0.404717 | 8:+7691738 | None:intergenic |
| GGTCACTTTAAGTTGTTGAT+AGG | 0.404842 | 8:+7691128 | None:intergenic |
| CTTTGAAAAGATGAAGGAAT+TGG | 0.406361 | 8:-7691294 | MsG0880042369.01.T01:CDS |
| GTAAATAAATCTGGATCTGT+TGG | 0.414990 | 8:-7691269 | MsG0880042369.01.T01:CDS |
| AAGTAATGGATGATCCTCTA+AGG | 0.416314 | 8:+7691823 | None:intergenic |
| GAACAAGTTCTTCTTTAGAA+AGG | 0.435606 | 8:-7691234 | MsG0880042369.01.T01:CDS |
| GAATTGGAGGTAAATAAATC+TGG | 0.436449 | 8:-7691278 | MsG0880042369.01.T01:CDS |
| TGTGATGGGATAAGTCCATT+TGG | 0.449863 | 8:-7691512 | MsG0880042369.01.T01:CDS |
| AATTCATCTATGCTTAAAGT+TGG | 0.454200 | 8:+7691548 | None:intergenic |
| TCATAACTTGGGTTACTTGA+AGG | 0.455738 | 8:-7691477 | MsG0880042369.01.T01:CDS |
| ATGTGGCTTTGAAAAGATGA+AGG | 0.468544 | 8:-7691300 | MsG0880042369.01.T01:CDS |
| ATCATAGAAGAAAAGTTAAG+TGG | 0.477385 | 8:-7691152 | MsG0880042369.01.T01:CDS |
| GTTGCTAGCTTACCAAAATC+CGG | 0.477830 | 8:-7691902 | MsG0880042369.01.T01:CDS |
| TGCTTTCAACCAAGTTGTGC+CGG | 0.488743 | 8:+7691883 | None:intergenic |
| ATCTCATGGGAGACCAATCA+AGG | 0.491533 | 8:-7692120 | None:intergenic |
| TTTGAAAAGAGTTTATAGGT+TGG | 0.496983 | 8:+7691957 | None:intergenic |
| GAAAACATAATCAATTTATG+TGG | 0.499434 | 8:-7691317 | MsG0880042369.01.T01:CDS |
| ATTGGACTCTTTAATTGACT+TGG | 0.500029 | 8:+7691661 | None:intergenic |
| TGATCCCAAAATGAACCAAA+TGG | 0.505427 | 8:+7691497 | None:intergenic |
| GTAGACACAAAAGTGTCAAA+AGG | 0.506973 | 8:+7691611 | None:intergenic |
| TACCAAAATCCGGCACAACT+TGG | 0.510919 | 8:-7691892 | MsG0880042369.01.T01:CDS |
| TTCTTTAGAAAGGCAGAAGT+AGG | 0.511273 | 8:-7691224 | MsG0880042369.01.T01:CDS |
| TGAAAAGATGAAGGAATTGG+AGG | 0.515225 | 8:-7691291 | MsG0880042369.01.T01:CDS |
| TAAACATTGTATTCAAAGAA+AGG | 0.517657 | 8:+7691776 | None:intergenic |
| TGTGAATTGAATTTAAGTAA+TGG | 0.520270 | 8:+7691809 | None:intergenic |
| CTTCCTAGAATAAAAGGGTG+GGG | 0.534016 | 8:-7692034 | MsG0880042369.01.T01:CDS |
| TCTCACTTCCTAGAATAAAA+GGG | 0.537148 | 8:-7692039 | MsG0880042369.01.T01:CDS |
| TTCCTAGAATAAAAGGGTGG+GGG | 0.558654 | 8:-7692033 | MsG0880042369.01.T01:CDS |
| GGGTTACTTGAAGGAATGCA+TGG | 0.572338 | 8:-7691468 | MsG0880042369.01.T01:CDS |
| CACTTCCTAGAATAAAAGGG+TGG | 0.572694 | 8:-7692036 | MsG0880042369.01.T01:CDS |
| TTTGAATACAATGTTTATGG+TGG | 0.593264 | 8:-7691770 | MsG0880042369.01.T01:CDS |
| AGAAGCAAGCCAACAAGACA+AGG | 0.609027 | 8:-7692089 | MsG0880042369.01.T01:CDS |
| ACTTCCTAGAATAAAAGGGT+GGG | 0.610406 | 8:-7692035 | MsG0880042369.01.T01:CDS |
| TCCTAGAATAAAAGGGTGGG+GGG | 0.616532 | 8:-7692032 | MsG0880042369.01.T01:CDS |
| GAAACGATGGCGATTAACAA+TGG | 0.622327 | 8:+7691850 | None:intergenic |
| GACTTGGCTAGTGAAAAGAA+TGG | 0.625045 | 8:+7691677 | None:intergenic |
| ATGGGAGACCAATCAAGGGA+TGG | 0.625439 | 8:-7692115 | MsG0880042369.01.T01:CDS |
| CCTCTAAGGAAGAGAAACGA+TGG | 0.665867 | 8:+7691837 | None:intergenic |
| TCTCATGGGAGACCAATCAA+GGG | 0.668978 | 8:-7692119 | None:intergenic |
| TATCAAACATGAATGAACCA+AGG | 0.671305 | 8:-7691718 | MsG0880042369.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAAAAAAATAAAAATCTT+GGG | + | Chr8:7691242-7691261 | None:intergenic | 10.0% |
| !! | CTTGAAAAAAATAAAAATCT+TGG | + | Chr8:7691243-7691262 | None:intergenic | 15.0% |
| !!! | AATAGAATTGCAAATTTTTT+GGG | - | Chr8:7691865-7691884 | MsG0880042369.01.T01:CDS | 15.0% |
| !!! | CAAGATTTTTATTTTTTTCA+AGG | - | Chr8:7691241-7691260 | MsG0880042369.01.T01:CDS | 15.0% |
| !!! | TTTATTTTTTTCAAGGTTTT+TGG | - | Chr8:7691248-7691267 | MsG0880042369.01.T01:CDS | 15.0% |
| !! | GAAAACATAATCAATTTATG+TGG | - | Chr8:7691928-7691947 | MsG0880042369.01.T01:CDS | 20.0% |
| !! | TAAACATTGTATTCAAAGAA+AGG | + | Chr8:7691472-7691491 | None:intergenic | 20.0% |
| !! | TGTGAATTGAATTTAAGTAA+TGG | + | Chr8:7691439-7691458 | None:intergenic | 20.0% |
| !! | TTCTTTGAATACAATGTTTA+TGG | - | Chr8:7691472-7691491 | MsG0880042369.01.T01:CDS | 20.0% |
| !!! | CAATAGAATTGCAAATTTTT+TGG | - | Chr8:7691864-7691883 | MsG0880042369.01.T01:CDS | 20.0% |
| !!! | GGTTTTTTGCTAATAAAATA+AGG | - | Chr8:7691659-7691678 | MsG0880042369.01.T01:CDS | 20.0% |
| !!! | TAACTTTTCTTCTATGATTT+TGG | + | Chr8:7692091-7692110 | None:intergenic | 20.0% |
| !!! | TGATTTTGAAAAGAGTTTAT+AGG | + | Chr8:7691295-7691314 | None:intergenic | 20.0% |
| !!! | TTTTTGAAAGTTATTGTGAT+GGG | - | Chr8:7691719-7691738 | MsG0880042369.01.T01:CDS | 20.0% |
| !!! | TTTTTTGAAAGTTATTGTGA+TGG | - | Chr8:7691718-7691737 | MsG0880042369.01.T01:CDS | 20.0% |
| ! | AAATTATCTTTCTCCTTCAA+TGG | - | Chr8:7692053-7692072 | MsG0880042369.01.T01:CDS | 25.0% |
| ! | AACAACAATATCATTGTCTT+TGG | + | Chr8:7691326-7691345 | None:intergenic | 25.0% |
| ! | AATTCATCTATGCTTAAAGT+TGG | + | Chr8:7691700-7691719 | None:intergenic | 25.0% |
| ! | ATCATAGAAGAAAAGTTAAG+TGG | - | Chr8:7692093-7692112 | MsG0880042369.01.T01:CDS | 25.0% |
| ! | TTTGAAAAGAGTTTATAGGT+TGG | + | Chr8:7691291-7691310 | None:intergenic | 25.0% |
| ! | TTTGAATACAATGTTTATGG+TGG | - | Chr8:7691475-7691494 | MsG0880042369.01.T01:CDS | 25.0% |
| !! | ATAGGTTGGATTAAATTTGA+TGG | + | Chr8:7691277-7691296 | None:intergenic | 25.0% |
| !!! | ATAGGTTGATTTGAAAACTT+TGG | + | Chr8:7691510-7691529 | None:intergenic | 25.0% |
| ATTGGACTCTTTAATTGACT+TGG | + | Chr8:7691587-7691606 | None:intergenic | 30.0% | |
| GAATTGGAGGTAAATAAATC+TGG | - | Chr8:7691967-7691986 | MsG0880042369.01.T01:CDS | 30.0% | |
| GGATTAACTGCTTAAATTCA+TGG | + | Chr8:7691186-7691205 | None:intergenic | 30.0% | |
| GTAAATAAATCTGGATCTGT+TGG | - | Chr8:7691976-7691995 | MsG0880042369.01.T01:CDS | 30.0% | |
| TATCAAACATGAATGAACCA+AGG | - | Chr8:7691527-7691546 | MsG0880042369.01.T01:CDS | 30.0% | |
| TCTCACTTCCTAGAATAAAA+GGG | - | Chr8:7691206-7691225 | MsG0880042369.01.T01:CDS | 30.0% | |
| TTGGTTCATTCATGTTTGAT+AGG | + | Chr8:7691528-7691547 | None:intergenic | 30.0% | |
| ! | CTTTGAAAAGATGAAGGAAT+TGG | - | Chr8:7691951-7691970 | MsG0880042369.01.T01:CDS | 30.0% |
| ! | GAACAAGTTCTTCTTTAGAA+AGG | - | Chr8:7692011-7692030 | MsG0880042369.01.T01:CDS | 30.0% |
| ! | GATAGTTTTTCTTCCATTGA+AGG | + | Chr8:7692069-7692088 | None:intergenic | 30.0% |
| !! | AAGTCCATTTGGTTCATTTT+GGG | - | Chr8:7691744-7691763 | MsG0880042369.01.T01:CDS | 30.0% |
| !! | TAAGTCCATTTGGTTCATTT+TGG | - | Chr8:7691743-7691762 | MsG0880042369.01.T01:CDS | 30.0% |
| !!! | TCATTTTGGGATCATAACTT+GGG | - | Chr8:7691757-7691776 | MsG0880042369.01.T01:CDS | 30.0% |
| !!! | TTCATTTTGGGATCATAACT+TGG | - | Chr8:7691756-7691775 | MsG0880042369.01.T01:CDS | 30.0% |
| ACTTCCTAGAATAAAAGGGT+GGG | - | Chr8:7691210-7691229 | MsG0880042369.01.T01:CDS | 35.0% | |
| CTCTCACTTCCTAGAATAAA+AGG | - | Chr8:7691205-7691224 | MsG0880042369.01.T01:CDS | 35.0% | |
| TCATAACTTGGGTTACTTGA+AGG | - | Chr8:7691768-7691787 | MsG0880042369.01.T01:CDS | 35.0% | |
| TGAAAAGATGAAGGAATTGG+AGG | - | Chr8:7691954-7691973 | MsG0880042369.01.T01:CDS | 35.0% | |
| TGATCCCAAAATGAACCAAA+TGG | + | Chr8:7691751-7691770 | None:intergenic | 35.0% | |
| ! | ATGAATGAACCAAGGCTTTT+TGG | - | Chr8:7691535-7691554 | MsG0880042369.01.T01:CDS | 35.0% |
| ! | CTATCCTTTTACTAGAGAAG+AGG | - | Chr8:7691888-7691907 | MsG0880042369.01.T01:CDS | 35.0% |
| ! | TGAATGAACCAAGGCTTTTT+GGG | - | Chr8:7691536-7691555 | MsG0880042369.01.T01:CDS | 35.0% |
| ! | TTCTTTAGAAAGGCAGAAGT+AGG | - | Chr8:7692021-7692040 | MsG0880042369.01.T01:CDS | 35.0% |
| ! | TTGACACTTTTGTGTCTACT+TGG | - | Chr8:7691638-7691657 | MsG0880042369.01.T01:CDS | 35.0% |
| !! | AAGTAATGGATGATCCTCTA+AGG | + | Chr8:7691425-7691444 | None:intergenic | 35.0% |
| !! | ATGTGGCTTTGAAAAGATGA+AGG | - | Chr8:7691945-7691964 | MsG0880042369.01.T01:CDS | 35.0% |
| !! | CTTTTATTCTAGGAAGTGAG+AGG | + | Chr8:7691207-7691226 | None:intergenic | 35.0% |
| !! | GTAGACACAAAAGTGTCAAA+AGG | + | Chr8:7691637-7691656 | None:intergenic | 35.0% |
| CACTTCCTAGAATAAAAGGG+TGG | - | Chr8:7691209-7691228 | MsG0880042369.01.T01:CDS | 40.0% | |
| CATGGTTTACCTTGTCTTGT+TGG | + | Chr8:7691168-7691187 | None:intergenic | 40.0% | |
| CTCTCCTCTTCTCTAGTAAA+AGG | + | Chr8:7691895-7691914 | None:intergenic | 40.0% | |
| CTTCCTAGAATAAAAGGGTG+GGG | - | Chr8:7691211-7691230 | MsG0880042369.01.T01:CDS | 40.0% | |
| GAAACGATGGCGATTAACAA+TGG | + | Chr8:7691398-7691417 | None:intergenic | 40.0% | |
| GACTTGGCTAGTGAAAAGAA+TGG | + | Chr8:7691571-7691590 | None:intergenic | 40.0% | |
| TTCCTAGAATAAAAGGGTGG+GGG | - | Chr8:7691212-7691231 | MsG0880042369.01.T01:CDS | 40.0% | |
| ! | GTTGCTAGCTTACCAAAATC+CGG | - | Chr8:7691343-7691362 | MsG0880042369.01.T01:CDS | 40.0% |
| ! | TGTGATGGGATAAGTCCATT+TGG | - | Chr8:7691733-7691752 | MsG0880042369.01.T01:CDS | 40.0% |
| ACATGAGTCCCAAAAAGCCT+TGG | + | Chr8:7691547-7691566 | None:intergenic | 45.0% | |
| AGAAGCAAGCCAACAAGACA+AGG | - | Chr8:7691156-7691175 | MsG0880042369.01.T01:CDS | 45.0% | |
| CCATCGTTTCTCTTCCTTAG+AGG | - | Chr8:7691408-7691427 | MsG0880042369.01.T01:CDS | 45.0% | |
| CTTCTTGTCCATCCCTTGAT+TGG | + | Chr8:7691141-7691160 | None:intergenic | 45.0% | |
| GAAAGGCAGAAGTAGGAGAT+TGG | - | Chr8:7692028-7692047 | MsG0880042369.01.T01:CDS | 45.0% | |
| GGGTTACTTGAAGGAATGCA+TGG | - | Chr8:7691777-7691796 | MsG0880042369.01.T01:CDS | 45.0% | |
| TACCAAAATCCGGCACAACT+TGG | - | Chr8:7691353-7691372 | MsG0880042369.01.T01:CDS | 45.0% | |
| TCCTAGAATAAAAGGGTGGG+GGG | - | Chr8:7691213-7691232 | MsG0880042369.01.T01:CDS | 45.0% | |
| TGCTTTCAACCAAGTTGTGC+CGG | + | Chr8:7691365-7691384 | None:intergenic | 45.0% | |
| ! | AACCAAGTTGTGCCGGATTT+TGG | + | Chr8:7691358-7691377 | None:intergenic | 45.0% |
| ! | CCTCTAAGGAAGAGAAACGA+TGG | + | Chr8:7691411-7691430 | None:intergenic | 45.0% |
| !!! | TATATAAATTATTTTACAAT+TGG | + | Chr8:7691605-7691624 | None:intergenic | 5.0% |
| ATGGGAGACCAATCAAGGGA+TGG | - | Chr8:7691130-7691149 | MsG0880042369.01.T01:CDS | 50.0% | |
| ! | GCCCCCCACCCTTTTATTCT+AGG | + | Chr8:7691217-7691236 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 7691130 | 7692137 | 7691130 | ID=MsG0880042369.01;Name=MsG0880042369.01 |
| Chr8 | mRNA | 7691130 | 7692137 | 7691130 | ID=MsG0880042369.01.T01;Parent=MsG0880042369.01;Name=MsG0880042369.01.T01;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|335 |
| Chr8 | exon | 7691130 | 7692137 | 7691130 | ID=MsG0880042369.01.T01:exon:2734;Parent=MsG0880042369.01.T01 |
| Chr8 | CDS | 7691130 | 7692137 | 7691130 | ID=MsG0880042369.01.T01:cds;Parent=MsG0880042369.01.T01 |
| Gene Sequence |
| Protein sequence |
