AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022055.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022055.01.T01 MTR_4g081440 68.539 178 4 1 1 126 97 274 3.13e-75 231
MsG0480022055.01.T01 MTR_4g081440 68.539 178 4 1 1 126 101 278 4.12e-75 231
MsG0480022055.01.T01 MTR_4g077150 37.500 112 52 4 17 125 20 116 1.30e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022055.01.T01 AT4G27250 44.693 179 46 3 1 126 90 268 2.75e-40 141
MsG0480022055.01.T01 AT4G27250 45.562 169 49 3 1 126 90 258 3.91e-40 141

Find 46 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGATTTGAGCAGGTTTA+TGG 0.190488 4:+67486424 None:intergenic
CAATGCACACATATTCTTAA+TGG 0.229405 4:-67485654 MsG0480022055.01.T01:CDS
ACACAGTGTCAGTTTGTATT+TGG 0.230014 4:+67486297 None:intergenic
ATGCCTGGACTCCACATCTT+TGG 0.242242 4:-67485012 MsG0480022055.01.T01:CDS
TTTATGGTTCCTTTGATTGC+AGG 0.296003 4:+67486440 None:intergenic
GTACGCTCCTTCTCCAAGTT+GGG 0.300401 4:-67484987 MsG0480022055.01.T01:CDS
ATTGACTAACATTTCATTGC+AGG 0.329367 4:-67483271 MsG0480022055.01.T01:CDS
CAGAATTAACATTAGTAATC+TGG 0.338853 4:+67483184 None:intergenic
TGAAATCCAATTCTGTGAAA+AGG 0.362071 4:-67486400 MsG0480022055.01.T01:CDS
TGATCTTCGCGCCTCATGCC+TGG 0.362792 4:-67485027 MsG0480022055.01.T01:CDS
TGCCTGGACTCCACATCTTT+GGG 0.371118 4:-67485011 MsG0480022055.01.T01:CDS
TGGCAAGATTCATCAACAAT+AGG 0.382737 4:+67486317 None:intergenic
CGTACGCTCCTTCTCCAAGT+TGG 0.395103 4:-67484988 MsG0480022055.01.T01:CDS
ACATAGAAGATGCTTGGAAA+TGG 0.426179 4:-67483245 MsG0480022055.01.T01:CDS
GAAATCCAATTCTGTGAAAA+GGG 0.430378 4:-67486399 MsG0480022055.01.T01:CDS
GTATAGTCATAGGTGTGAAT+TGG 0.447801 4:-67483352 MsG0480022055.01.T01:CDS
TCTGCTGTAAATGCACGAAT+GGG 0.461394 4:-67485710 MsG0480022055.01.T01:CDS
TTATGGTTCCTTTGATTGCA+GGG 0.488008 4:+67486441 None:intergenic
CCATTACTTACCCATCCACT+TGG 0.492651 4:+67486263 None:intergenic
ATCTGCTGTAAATGCACGAA+TGG 0.493103 4:-67485711 MsG0480022055.01.T01:CDS
AGATGAATAAGTATAGTCAT+AGG 0.493126 4:-67483362 MsG0480022055.01.T01:CDS
ATTTCAAGCAAGATTTGAGC+AGG 0.496756 4:+67486417 None:intergenic
TACGCTCCTTCTCCAAGTTG+GGG 0.501880 4:-67484986 MsG0480022055.01.T01:CDS
CGCCCAAAGATGTGGAGTCC+AGG 0.504394 4:+67485009 None:intergenic
CTAAAGATAGCAATGGAAAG+TGG 0.532380 4:-67486343 MsG0480022055.01.T01:CDS
TAGTCATAGGTGTGAATTGG+TGG 0.545207 4:-67483349 MsG0480022055.01.T01:CDS
GGAATACACAACCAAGTGGA+TGG 0.556204 4:-67486274 MsG0480022055.01.T01:CDS
AGGATAACATAGAAGATGCT+TGG 0.557792 4:-67483251 MsG0480022055.01.T01:CDS
ATAATTGACCCTGCAATCAA+AGG 0.559331 4:-67486449 MsG0480022055.01.T01:CDS
ATTACTGCTAAAGATAGCAA+TGG 0.565154 4:-67486350 MsG0480022055.01.T01:CDS
GGAGCGTACGCCCAAAGATG+TGG 0.569024 4:+67485001 None:intergenic
TCATAGGTGTGAATTGGTGG+TGG 0.571249 4:-67483346 MsG0480022055.01.T01:CDS
CATGAGGTGATCACCGGAGT+TGG 0.592467 4:-67485055 MsG0480022055.01.T01:CDS
CGCTCCTTCTCCAAGTTGGG+GGG 0.597867 4:-67484984 MsG0480022055.01.T01:intron
GAACATGCTAAAGCAAAGGT+AGG 0.608639 4:-67485632 MsG0480022055.01.T01:intron
AATGGAACATGCTAAAGCAA+AGG 0.609297 4:-67485636 MsG0480022055.01.T01:CDS
ACGCTCCTTCTCCAAGTTGG+GGG 0.611997 4:-67484985 MsG0480022055.01.T01:CDS
GAAGATCACATCACCAACTC+CGG 0.612539 4:+67485042 None:intergenic
GGAACACATGAGGTGATCAC+CGG 0.615617 4:-67485061 MsG0480022055.01.T01:CDS
GAATACACAACCAAGTGGAT+GGG 0.623474 4:-67486273 MsG0480022055.01.T01:CDS
AGATGTGGAGTCCAGGCATG+AGG 0.624712 4:+67485016 None:intergenic
GTTAATGAGAAAGAAAACAT+TGG 0.627963 4:-67486612 MsG0480022055.01.T01:intron
AAATACAAACTGACACTGTG+TGG 0.677088 4:-67486295 MsG0480022055.01.T01:CDS
CTGCTGTAAATGCACGAATG+GGG 0.681829 4:-67485709 MsG0480022055.01.T01:CDS
TGTTCCTGTAGGAACACATG+AGG 0.689751 4:-67485071 MsG0480022055.01.T01:intron
GTGTGGAATACACAACCAAG+TGG 0.719552 4:-67486278 MsG0480022055.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATCCATTAAAATAAAT+AGG - Chr4:67485607-67485626 MsG0480022055.01.T01:intron 10.0%
!! ATATGTATATTAAATTCTTC+AGG - Chr4:67484286-67484305 MsG0480022055.01.T01:intron 15.0%
!! GTTTAATCCAAAATATATTT+AGG - Chr4:67485264-67485283 MsG0480022055.01.T01:intron 15.0%
!! TATAAAATGTTGTTAAATAG+TGG - Chr4:67483821-67483840 MsG0480022055.01.T01:intron 15.0%
!! TATGTATATTAAATTCTTCA+GGG - Chr4:67484287-67484306 MsG0480022055.01.T01:intron 15.0%
!!! ATAAACGTTTTTTAATGTAT+AGG - Chr4:67483998-67484017 MsG0480022055.01.T01:intron 15.0%
!!! ATAGATCCTATTTATTTTAA+TGG + Chr4:67485616-67485635 None:intergenic 15.0%
!!! ATGAACTGTTTTTAAAATAA+CGG + Chr4:67485994-67486013 None:intergenic 15.0%
!!! ATTTAATTTGCTAAAGATAA+TGG - Chr4:67483664-67483683 MsG0480022055.01.T01:intron 15.0%
!!! TTTAATTTGCTAAAGATAAT+GGG - Chr4:67483665-67483684 MsG0480022055.01.T01:intron 15.0%
!! AAGATTACTCTATAAATAAG+GGG + Chr4:67484928-67484947 None:intergenic 20.0%
!! AATCCAAAATATATTTAGGT+TGG - Chr4:67485268-67485287 MsG0480022055.01.T01:intron 20.0%
!! AATTGATTATGTATGCATAT+AGG - Chr4:67484033-67484052 MsG0480022055.01.T01:intron 20.0%
!! ACAAGATTACTCTATAAATA+AGG + Chr4:67484930-67484949 None:intergenic 20.0%
!! ATATGCATACATAATCAATT+TGG + Chr4:67484033-67484052 None:intergenic 20.0%
!! CAAGATTACTCTATAAATAA+GGG + Chr4:67484929-67484948 None:intergenic 20.0%
!! CATGAAAAAGAACAAAAAAA+TGG + Chr4:67485444-67485463 None:intergenic 20.0%
!! CTGATTAAAATATTCAGTTA+GGG + Chr4:67486411-67486430 None:intergenic 20.0%
!! TCTGATTAAAATATTCAGTT+AGG + Chr4:67486412-67486431 None:intergenic 20.0%
!! TTATTGAGTAATCATATATG+AGG - Chr4:67484898-67484917 MsG0480022055.01.T01:intron 20.0%
!! TTTAAATATTGTTTGTGCAT+TGG - Chr4:67483254-67483273 MsG0480022055.01.T01:CDS 20.0%
!!! AGATTTTTGATATTTCATCT+CGG - Chr4:67483285-67483304 MsG0480022055.01.T01:CDS 20.0%
!!! TCATTTTTTTCATGTAAAGT+CGG - Chr4:67484656-67484675 MsG0480022055.01.T01:intron 20.0%
!!! TGTATTTTACTCTTTTTCAA+TGG + Chr4:67485535-67485554 None:intergenic 20.0%
!!! TTGAATTGATTTTACCTAAA+AGG - Chr4:67485391-67485410 MsG0480022055.01.T01:intron 20.0%
!!! TTTCTTGAGTTTTTCTATTT+TGG - Chr4:67483597-67483616 MsG0480022055.01.T01:intron 20.0%
! AAGGTAAATAACCATAATCT+AGG + Chr4:67484479-67484498 None:intergenic 25.0%
! AATTAACTGAACCATTACAT+TGG - Chr4:67485955-67485974 MsG0480022055.01.T01:intron 25.0%
! ACTAAATGCAAGAAATCAAT+AGG + Chr4:67486099-67486118 None:intergenic 25.0%
! AGATGAATAAGTATAGTCAT+AGG - Chr4:67486429-67486448 MsG0480022055.01.T01:CDS 25.0%
! CAGAATTAACATTAGTAATC+TGG + Chr4:67486610-67486629 None:intergenic 25.0%
! CGATGTTAATATTCATCAAA+CGG + Chr4:67486332-67486351 None:intergenic 25.0%
! GTTAATGAGAAAGAAAACAT+TGG - Chr4:67483179-67483198 MsG0480022055.01.T01:CDS 25.0%
! GTTGGAATATTGATATTGAT+AGG - Chr4:67486117-67486136 MsG0480022055.01.T01:intron 25.0%
! TCAAAGAAACTAAAAGATCT+GGG - Chr4:67484399-67484418 MsG0480022055.01.T01:intron 25.0%
! TCAGTTAATTAAGTTTGGTT+CGG + Chr4:67486042-67486061 None:intergenic 25.0%
! TCTGATGTTAAAATAAGACA+GGG - Chr4:67484847-67484866 MsG0480022055.01.T01:intron 25.0%
! TGTTAAGGTTTACAACTTTA+GGG + Chr4:67485481-67485500 None:intergenic 25.0%
! TTGTTAAGGTTTACAACTTT+AGG + Chr4:67485482-67485501 None:intergenic 25.0%
!! ATTGATTTCTTGCATTTAGT+TGG - Chr4:67486099-67486118 MsG0480022055.01.T01:intron 25.0%
!! GTTCCAACCTAAATATATTT+TGG + Chr4:67485274-67485293 None:intergenic 25.0%
!! TTTGATGTACTATTTCTTCA+AGG + Chr4:67484443-67484462 None:intergenic 25.0%
!!! AGTTTTTCTATTTTGGTGAT+AGG - Chr4:67483604-67483623 MsG0480022055.01.T01:intron 25.0%
!!! CAAACGTTTTTAAAGATAAG+AGG - Chr4:67485735-67485754 MsG0480022055.01.T01:CDS 25.0%
!!! CAGTTAATTTTAGTTTGGTT+CGG + Chr4:67485944-67485963 None:intergenic 25.0%
!!! CTGTTTTTAAAATAACGGTT+CGG + Chr4:67485989-67486008 None:intergenic 25.0%
!!! TACTTACACTTTTCTAGTTT+TGG - Chr4:67485839-67485858 MsG0480022055.01.T01:intron 25.0%
!!! TGGTTCAGTTAATTTTAGTT+TGG + Chr4:67485949-67485968 None:intergenic 25.0%
AAATCAATAGGTTCCTATGT+TGG + Chr4:67486087-67486106 None:intergenic 30.0%
AAATTTGTAACAACAGTGGA+CGG - Chr4:67485690-67485709 MsG0480022055.01.T01:CDS 30.0%
AACAATGCGCAACAAAATTT+GGG + Chr4:67484704-67484723 None:intergenic 30.0%
AATCAATAGGTTCCTATGTT+GGG + Chr4:67486086-67486105 None:intergenic 30.0%
AATGATCTCAACGATTACTT+CGG + Chr4:67484984-67485003 None:intergenic 30.0%
AGTTTAGACCAACATTGTTA+AGG + Chr4:67485496-67485515 None:intergenic 30.0%
ATGTGTTTGTAATGAAAGCT+AGG - Chr4:67483953-67483972 MsG0480022055.01.T01:intron 30.0%
ATTACTGCTAAAGATAGCAA+TGG - Chr4:67483441-67483460 MsG0480022055.01.T01:intron 30.0%
ATTATGTGTTGCCTAGATTA+TGG - Chr4:67484465-67484484 MsG0480022055.01.T01:intron 30.0%
ATTGACTAACATTTCATTGC+AGG - Chr4:67486520-67486539 MsG0480022055.01.T01:intron 30.0%
CAATGCACACATATTCTTAA+TGG - Chr4:67484137-67484156 MsG0480022055.01.T01:intron 30.0%
CTCAAAGAAACTAAAAGATC+TGG - Chr4:67484398-67484417 MsG0480022055.01.T01:intron 30.0%
CTCTGATGTTAAAATAAGAC+AGG - Chr4:67484846-67484865 MsG0480022055.01.T01:intron 30.0%
GAAATCCAATTCTGTGAAAA+GGG - Chr4:67483392-67483411 MsG0480022055.01.T01:intron 30.0%
GTTGTAAACCTTAACAATGT+TGG - Chr4:67485485-67485504 MsG0480022055.01.T01:intron 30.0%
TCGGTTCAGTTAATTAAGTT+TGG + Chr4:67486047-67486066 None:intergenic 30.0%
TGAAATCCAATTCTGTGAAA+AGG - Chr4:67483391-67483410 MsG0480022055.01.T01:intron 30.0%
TTAGATTTGAATGAGCTCTT+TGG - Chr4:67485050-67485069 MsG0480022055.01.T01:CDS 30.0%
TTGAGTAATCATATATGAGG+TGG - Chr4:67484901-67484920 MsG0480022055.01.T01:intron 30.0%
TTGTGTTTGTGAGTTTAAGA+CGG - Chr4:67486172-67486191 MsG0480022055.01.T01:intron 30.0%
! AACTAGAAAAGTGTAAGTAG+TGG + Chr4:67485838-67485857 None:intergenic 30.0%
! AGTTGGATTAGAATACTCTT+TGG + Chr4:67484237-67484256 None:intergenic 30.0%
! TAATGGGATTGATCTTGTTT+CGG - Chr4:67483681-67483700 MsG0480022055.01.T01:intron 30.0%
! TATTTTTCTTTATGAGTCCG+TGG + Chr4:67486220-67486239 None:intergenic 30.0%
! TTCTTTGAGGAAATTTCAGT+AGG + Chr4:67484387-67484406 None:intergenic 30.0%
! TTTGTAAGTGTCGTTATGAT+AGG + Chr4:67485586-67485605 None:intergenic 30.0%
!! AATGGTACGTGAAGTTTTAT+TGG + Chr4:67485426-67485445 None:intergenic 30.0%
!! TAATTAAGTTTGGTTCGGTT+CGG + Chr4:67486037-67486056 None:intergenic 30.0%
!!! AATTTTAGTTTGGTTCGGTT+CGG + Chr4:67485939-67485958 None:intergenic 30.0%
!!! ATGGTACGTGAAGTTTTATT+GGG + Chr4:67485425-67485444 None:intergenic 30.0%
!!! CAGATCTTTTAGTTTCTTTG+AGG + Chr4:67484400-67484419 None:intergenic 30.0%
AAATACAAACTGACACTGTG+TGG - Chr4:67483496-67483515 MsG0480022055.01.T01:intron 35.0%
AACATGCACAACAACAAACA+AGG + Chr4:67485112-67485131 None:intergenic 35.0%
AAGACTAGTAGCTAAACAGA+AGG + Chr4:67484498-67484517 None:intergenic 35.0%
AATAAGGCAAAACTGCACTA+TGG - Chr4:67484580-67484599 MsG0480022055.01.T01:intron 35.0%
AATGCTAGTAGTAGTAGCTA+AGG + Chr4:67483557-67483576 None:intergenic 35.0%
AATGGAACATGCTAAAGCAA+AGG - Chr4:67484155-67484174 MsG0480022055.01.T01:intron 35.0%
ACAATGCGCAACAAAATTTG+GGG + Chr4:67484703-67484722 None:intergenic 35.0%
ACACAGTGTCAGTTTGTATT+TGG + Chr4:67483497-67483516 None:intergenic 35.0%
ACATAGAAGATGCTTGGAAA+TGG - Chr4:67486546-67486565 MsG0480022055.01.T01:intron 35.0%
ACGCAAATTTGTAACAACAG+TGG - Chr4:67485686-67485705 MsG0480022055.01.T01:CDS 35.0%
ACTTTGACTCATGTACATAG+TGG + Chr4:67484527-67484546 None:intergenic 35.0%
AGCAGAACTTTAACACTTGA+AGG + Chr4:67483751-67483770 None:intergenic 35.0%
AGGATAACATAGAAGATGCT+TGG - Chr4:67486540-67486559 MsG0480022055.01.T01:intron 35.0%
AGTTCATTAACTGAACCGAA+TGG - Chr4:67486007-67486026 MsG0480022055.01.T01:intron 35.0%
ATAAGGCAAAACTGCACTAT+GGG - Chr4:67484581-67484600 MsG0480022055.01.T01:intron 35.0%
ATAATTGACCCTGCAATCAA+AGG - Chr4:67483342-67483361 MsG0480022055.01.T01:CDS 35.0%
ATCAATAGGTTCCTATGTTG+GGG + Chr4:67486085-67486104 None:intergenic 35.0%
ATCCAAAAACTGAACTGAAC+CGG - Chr4:67485909-67485928 MsG0480022055.01.T01:intron 35.0%
ATGTTTCATGGGATGACATA+AGG - Chr4:67485127-67485146 MsG0480022055.01.T01:intron 35.0%
ATTCTAATCCAACTACGCTA+AGG - Chr4:67484243-67484262 MsG0480022055.01.T01:intron 35.0%
ATTTCAAGCAAGATTTGAGC+AGG + Chr4:67483377-67483396 None:intergenic 35.0%
CGGTGAAAATAGCAACAAAT+TGG + Chr4:67484964-67484983 None:intergenic 35.0%
CGGTTCAATAACCAATGTAA+TGG + Chr4:67485969-67485988 None:intergenic 35.0%
CTAAAGATAGCAATGGAAAG+TGG - Chr4:67483448-67483467 MsG0480022055.01.T01:intron 35.0%
GAACAATGCGCAACAAAATT+TGG + Chr4:67484705-67484724 None:intergenic 35.0%
GAAGAGTCAGAAATATGACA+AGG - Chr4:67484359-67484378 MsG0480022055.01.T01:intron 35.0%
GAGCTCTTTGGTATGTATAA+TGG - Chr4:67485062-67485081 MsG0480022055.01.T01:CDS 35.0%
GATGACGCATTACACTTATT+AGG + Chr4:67485007-67485026 None:intergenic 35.0%
GCAGCAGAATTTGAACAAAT+TGG - Chr4:67483798-67483817 MsG0480022055.01.T01:intron 35.0%
GCTTGATTTACTAGTTCACT+TGG - Chr4:67486356-67486375 MsG0480022055.01.T01:CDS 35.0%
GGTACATTAGCAGTGAAAAA+CGG + Chr4:67483730-67483749 None:intergenic 35.0%
GTACATTAGCAGTGAAAAAC+GGG + Chr4:67483729-67483748 None:intergenic 35.0%
GTATAGTCATAGGTGTGAAT+TGG - Chr4:67486439-67486458 MsG0480022055.01.T01:CDS 35.0%
TATAAAGTCACCTGTTAGTG+AGG + Chr4:67483776-67483795 None:intergenic 35.0%
TATAATGGTAGATGCACGTT+GGG - Chr4:67485077-67485096 MsG0480022055.01.T01:intron 35.0%
TCCTACCTTGGTTATAAGTA+GGG - Chr4:67485876-67485895 MsG0480022055.01.T01:intron 35.0%
TGATTTACTAGTTCACTTGG+TGG - Chr4:67486359-67486378 MsG0480022055.01.T01:CDS 35.0%
TGGCAAGATTCATCAACAAT+AGG + Chr4:67483477-67483496 None:intergenic 35.0%
TGTTGTTGTGCATGTTTCAT+GGG - Chr4:67485116-67485135 MsG0480022055.01.T01:intron 35.0%
TTATGGTTCCTTTGATTGCA+GGG + Chr4:67483353-67483372 None:intergenic 35.0%
TTCCTACATATATATGCAGC+AGG - Chr4:67484337-67484356 MsG0480022055.01.T01:intron 35.0%
TTCCTGCTGCATATATATGT+AGG + Chr4:67484342-67484361 None:intergenic 35.0%
TTTATGGTTCCTTTGATTGC+AGG + Chr4:67483354-67483373 None:intergenic 35.0%
! AACAACCCTTTTCACAGAAT+TGG + Chr4:67483400-67483419 None:intergenic 35.0%
! AACGCATTGATAATCATCGA+AGG - Chr4:67483208-67483227 MsG0480022055.01.T01:CDS 35.0%
! ACATTCATTTTCTCCTACCT+TGG - Chr4:67485864-67485883 MsG0480022055.01.T01:intron 35.0%
! TTCATGTAAAGTCGGTCTTT+TGG - Chr4:67484664-67484683 MsG0480022055.01.T01:intron 35.0%
! TTGTTGTTGTGCATGTTTCA+TGG - Chr4:67485115-67485134 MsG0480022055.01.T01:intron 35.0%
!! CTCTTAGCTCTATACTAGTA+CGG - Chr4:67485293-67485312 MsG0480022055.01.T01:intron 35.0%
!! TAAGATTTTGACCACAACGA+AGG - Chr4:67485649-67485668 MsG0480022055.01.T01:CDS 35.0%
!! TCTTAGCTCTATACTAGTAC+GGG - Chr4:67485294-67485313 MsG0480022055.01.T01:intron 35.0%
!! TCTTTTTCATGTGAACACCA+TGG - Chr4:67485453-67485472 MsG0480022055.01.T01:intron 35.0%
!!! AGAGATGCTAACTTTTTCAC+AGG - Chr4:67486273-67486292 MsG0480022055.01.T01:CDS 35.0%
!!! CTTTTGAAGCGGGTTTTTTT+CGG - Chr4:67485240-67485259 MsG0480022055.01.T01:intron 35.0%
AAGCTGTACACTGTCTAACT+TGG - Chr4:67484199-67484218 MsG0480022055.01.T01:intron 40.0%
ACCATTTACCATTTCGTCCA+CGG - Chr4:67486200-67486219 MsG0480022055.01.T01:intron 40.0%
ATCTGCTGTAAATGCACGAA+TGG - Chr4:67484080-67484099 MsG0480022055.01.T01:intron 40.0%
ATGTTGGGGTCGGAAAATAA+AGG + Chr4:67486071-67486090 None:intergenic 40.0%
CAAGTGGGTAGAAATTGATC+TGG - Chr4:67486383-67486402 MsG0480022055.01.T01:CDS 40.0%
CATCTTTGTCCTTGTCAAGT+TGG + Chr4:67485761-67485780 None:intergenic 40.0%
CTACAATTAGACCTTCGTTG+TGG + Chr4:67485663-67485682 None:intergenic 40.0%
CTCCTACCTTGGTTATAAGT+AGG - Chr4:67485875-67485894 MsG0480022055.01.T01:intron 40.0%
GAACATGCTAAAGCAAAGGT+AGG - Chr4:67484159-67484178 MsG0480022055.01.T01:intron 40.0%
GAATACACAACCAAGTGGAT+GGG - Chr4:67483518-67483537 MsG0480022055.01.T01:intron 40.0%
GCAAGATTTGAGCAGGTTTA+TGG + Chr4:67483370-67483389 None:intergenic 40.0%
GCACATAGCAATAAGTGAGT+TGG - Chr4:67484875-67484894 MsG0480022055.01.T01:intron 40.0%
GTATAATGGTAGATGCACGT+TGG - Chr4:67485076-67485095 MsG0480022055.01.T01:intron 40.0%
TAGTCATAGGTGTGAATTGG+TGG - Chr4:67486442-67486461 MsG0480022055.01.T01:CDS 40.0%
TATGCTACAACTCTACAGCA+CGG + Chr4:67483853-67483872 None:intergenic 40.0%
TCTGCTGTAAATGCACGAAT+GGG - Chr4:67484081-67484100 MsG0480022055.01.T01:intron 40.0%
TGCGAAAAATAGCAGTGTGT+AGG + Chr4:67483882-67483901 None:intergenic 40.0%
TGTTGGGGTCGGAAAATAAA+GGG + Chr4:67486070-67486089 None:intergenic 40.0%
! CTGTATTGGGTTTTGCGATT+GGG - Chr4:67485206-67485225 MsG0480022055.01.T01:intron 40.0%
! GTTATAACAAGCACTGTTGC+AGG - Chr4:67483703-67483722 MsG0480022055.01.T01:intron 40.0%
! TCTGTATTGGGTTTTGCGAT+TGG - Chr4:67485205-67485224 MsG0480022055.01.T01:intron 40.0%
! TTATTTTCCGACCCCAACAT+AGG - Chr4:67486071-67486090 MsG0480022055.01.T01:intron 40.0%
!! AACCGGTTCAGTTCAGTTTT+TGG + Chr4:67485914-67485933 None:intergenic 40.0%
!! TTTACAACTTTAGGGTGCCA+TGG + Chr4:67485473-67485492 None:intergenic 40.0%
AAACCCGCTTCAAAAGAAGC+AGG + Chr4:67485236-67485255 None:intergenic 45.0%
ACCTTGGTTATAAGTAGGGC+TGG - Chr4:67485880-67485899 MsG0480022055.01.T01:intron 45.0%
ATAGGTTCCTATGTTGGGGT+CGG + Chr4:67486081-67486100 None:intergenic 45.0%
ATCACCTCATGTGTTCCTAC+AGG + Chr4:67484727-67484746 None:intergenic 45.0%
CAGTGGACGGAGAATGAAAT+TGG - Chr4:67485703-67485722 MsG0480022055.01.T01:CDS 45.0%
CCAAGTGGATGGGTAAGTAA+TGG - Chr4:67483528-67483547 MsG0480022055.01.T01:intron 45.0%
CCATTACTTACCCATCCACT+TGG + Chr4:67483531-67483550 None:intergenic 45.0%
CCTTGGTTATAAGTAGGGCT+GGG - Chr4:67485881-67485900 MsG0480022055.01.T01:intron 45.0%
CTGCTGTAAATGCACGAATG+GGG - Chr4:67484082-67484101 MsG0480022055.01.T01:intron 45.0%
GAAGATCACATCACCAACTC+CGG + Chr4:67484752-67484771 None:intergenic 45.0%
GAGTGTTACCTTAGCGTAGT+TGG + Chr4:67484254-67484273 None:intergenic 45.0%
GATAAGAGGCCAACTTGACA+AGG - Chr4:67485749-67485768 MsG0480022055.01.T01:intron 45.0%
GCCCTACTTATAACCAAGGT+AGG + Chr4:67485880-67485899 None:intergenic 45.0%
GGAATACACAACCAAGTGGA+TGG - Chr4:67483517-67483536 MsG0480022055.01.T01:intron 45.0%
GTGTGGAATACACAACCAAG+TGG - Chr4:67483513-67483532 MsG0480022055.01.T01:intron 45.0%
TCATAGGTGTGAATTGGTGG+TGG - Chr4:67486445-67486464 MsG0480022055.01.T01:CDS 45.0%
TCCGTGGACGAAATGGTAAA+TGG + Chr4:67486204-67486223 None:intergenic 45.0%
TCGCAAAACCCAATACAGAG+AGG + Chr4:67485204-67485223 None:intergenic 45.0%
TGTTCCTGTAGGAACACATG+AGG - Chr4:67484720-67484739 MsG0480022055.01.T01:intron 45.0%
TTATGAGTCCGTGGACGAAA+TGG + Chr4:67486211-67486230 None:intergenic 45.0%
TTGTTGCGCATTGTTCCTGT+AGG - Chr4:67484709-67484728 MsG0480022055.01.T01:intron 45.0%
! AGTTCACTTGGTGGACAAGT+GGG - Chr4:67486368-67486387 MsG0480022055.01.T01:CDS 45.0%
! ATTGGGCACTAGCACCTTTT+AGG + Chr4:67485408-67485427 None:intergenic 45.0%
! GCGCAACAAAATTTGGGGTA+TGG + Chr4:67484698-67484717 None:intergenic 45.0%
! TAGTTCACTTGGTGGACAAG+TGG - Chr4:67486367-67486386 MsG0480022055.01.T01:CDS 45.0%
!! CGAACCTGCTTCTTTTGAAG+CGG - Chr4:67485229-67485248 MsG0480022055.01.T01:intron 45.0%
!! GTTCGGTTCGGTTAACCATT+CGG + Chr4:67486025-67486044 None:intergenic 45.0%
!! TTTGGTTCGGTTCGGTTAAC+CGG + Chr4:67485931-67485950 None:intergenic 45.0%
!!! GAACCTGCTTCTTTTGAAGC+GGG - Chr4:67485230-67485249 MsG0480022055.01.T01:intron 45.0%
!! TTTAATATACATATTAAAAA+AGG + Chr4:67484280-67484299 None:intergenic 5.0%
!!! TTTTTTCAAAAAAATAAATA+AGG - Chr4:67484564-67484583 MsG0480022055.01.T01:intron 5.0%
ACAACAGCGAGTTCAACCCA+GGG + Chr4:67486156-67486175 None:intergenic 50.0%
ACGTCGGCAAAAAGGAGTGA+CGG + Chr4:67485168-67485187 None:intergenic 50.0%
ATGCCTGGACTCCACATCTT+TGG - Chr4:67484779-67484798 MsG0480022055.01.T01:intron 50.0%
CCCAGCCCTACTTATAACCA+AGG + Chr4:67485884-67485903 None:intergenic 50.0%
GGAACACATGAGGTGATCAC+CGG - Chr4:67484730-67484749 MsG0480022055.01.T01:intron 50.0%
GGGGTCGGAAAATAAAGGGT+CGG + Chr4:67486066-67486085 None:intergenic 50.0%
GTACGCTCCTTCTCCAAGTT+GGG - Chr4:67484804-67484823 MsG0480022055.01.T01:intron 50.0%
GTTCTGCTGTCCTCACTAAC+AGG - Chr4:67483763-67483782 MsG0480022055.01.T01:intron 50.0%
TACGCTCCTTCTCCAAGTTG+GGG - Chr4:67484805-67484824 MsG0480022055.01.T01:intron 50.0%
TATACCCCCCAACTTGGAGA+AGG + Chr4:67484814-67484833 None:intergenic 50.0%
TCCAAGTATACCCCCCAACT+TGG + Chr4:67484820-67484839 None:intergenic 50.0%
TGCCTGGACTCCACATCTTT+GGG - Chr4:67484780-67484799 MsG0480022055.01.T01:intron 50.0%
! TCACTCCTTTTTGCCGACGT+GGG - Chr4:67485168-67485187 MsG0480022055.01.T01:intron 50.0%
! TCCAAGTTGGGGGGTATACT+TGG - Chr4:67484816-67484835 MsG0480022055.01.T01:intron 50.0%
ACGTCGGGTCCTCTCTGTAT+TGG - Chr4:67485192-67485211 MsG0480022055.01.T01:intron 55.0%
AGATGTGGAGTCCAGGCATG+AGG + Chr4:67484778-67484797 None:intergenic 55.0%
AGGTTGAACAGCTCCACCCT+GGG - Chr4:67486137-67486156 MsG0480022055.01.T01:intron 55.0%
CACAACAGCGAGTTCAACCC+AGG + Chr4:67486157-67486176 None:intergenic 55.0%
CATGAGGTGATCACCGGAGT+TGG - Chr4:67484736-67484755 MsG0480022055.01.T01:intron 55.0%
CGTACGCTCCTTCTCCAAGT+TGG - Chr4:67484803-67484822 MsG0480022055.01.T01:intron 55.0%
CGTCGGGTCCTCTCTGTATT+GGG - Chr4:67485193-67485212 MsG0480022055.01.T01:intron 55.0%
! ACGCTCCTTCTCCAAGTTGG+GGG - Chr4:67484806-67484825 MsG0480022055.01.T01:intron 55.0%
! GTCACTCCTTTTTGCCGACG+TGG - Chr4:67485167-67485186 MsG0480022055.01.T01:intron 55.0%
! TAGGTTGAACAGCTCCACCC+TGG - Chr4:67486136-67486155 MsG0480022055.01.T01:intron 55.0%
ACAGCGAGTTCAACCCAGGG+TGG + Chr4:67486153-67486172 None:intergenic 60.0%
ACGTGCCCACGTCGGCAAAA+AGG + Chr4:67485176-67485195 None:intergenic 60.0%
CGCCCAAAGATGTGGAGTCC+AGG + Chr4:67484785-67484804 None:intergenic 60.0%
GGAGCGTACGCCCAAAGATG+TGG + Chr4:67484793-67484812 None:intergenic 60.0%
TGATCTTCGCGCCTCATGCC+TGG - Chr4:67484764-67484783 MsG0480022055.01.T01:intron 60.0%
! CGCTCCTTCTCCAAGTTGGG+GGG - Chr4:67484807-67484826 MsG0480022055.01.T01:intron 60.0%
! TTTTGCCGACGTGGGCACGT+CGG - Chr4:67485176-67485195 MsG0480022055.01.T01:intron 60.0%
TTTGCCGACGTGGGCACGTC+GGG - Chr4:67485177-67485196 MsG0480022055.01.T01:intron 65.0%
AGGACCCGACGTGCCCACGT+CGG + Chr4:67485184-67485203 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 67483167 67486646 67483167 ID=MsG0480022055.01;Name=MsG0480022055.01
Chr4 mRNA 67483167 67486646 67483167 ID=MsG0480022055.01.T01;Parent=MsG0480022055.01;Name=MsG0480022055.01.T01;_AED=0.50;_eAED=0.72;_QI=0|0|0|1|0.75|0.6|5|0|231
Chr4 exon 67486613 67486646 67486613 ID=MsG0480022055.01.T01:exon:8329;Parent=MsG0480022055.01.T01
Chr4 exon 67486270 67486491 67486270 ID=MsG0480022055.01.T01:exon:8328;Parent=MsG0480022055.01.T01
Chr4 exon 67485633 67485758 67485633 ID=MsG0480022055.01.T01:exon:8327;Parent=MsG0480022055.01.T01
Chr4 exon 67484985 67485082 67484985 ID=MsG0480022055.01.T01:exon:8326;Parent=MsG0480022055.01.T01
Chr4 exon 67483167 67483382 67483167 ID=MsG0480022055.01.T01:exon:8325;Parent=MsG0480022055.01.T01
Chr4 CDS 67486613 67486646 67486613 ID=MsG0480022055.01.T01:cds;Parent=MsG0480022055.01.T01
Chr4 CDS 67486270 67486491 67486270 ID=MsG0480022055.01.T01:cds;Parent=MsG0480022055.01.T01
Chr4 CDS 67485633 67485758 67485633 ID=MsG0480022055.01.T01:cds;Parent=MsG0480022055.01.T01
Chr4 CDS 67484985 67485082 67484985 ID=MsG0480022055.01.T01:cds;Parent=MsG0480022055.01.T01
Chr4 CDS 67483167 67483382 67483167 ID=MsG0480022055.01.T01:cds;Parent=MsG0480022055.01.T01
Gene Sequence

>MsG0480022055.01.T01

ATGCAATTCAATGTTAATGAGAAAGAAAACATTGAGAACTTTGTTCAAACAAATATAATTGACCCTGCAATCAAAGGAACCATAAACCTGCTCAAATCTTGCTTGAAATCCAATTCTGTGAAAAGGGTTGTTTTCACATCTTCTATAAGTACTATTACTGCTAAAGATAGCAATGGAAAGTGGAAACCTATTGTTGATGAATCTTGCCAAATACAAACTGACACTGTGTGGAATACACAACCAAGTGGATGGGTAAGTGAAACTGAAAACTACAAGATATTATCTGCTGTAAATGCACGAATGGGGTCAATTGCTTTAGTTCACATTGAAGATATATGCAATGCACACATATTCTTAATGGAACATGCTAAAGCAAAGGTAGGAACACATGAGGTGATCACCGGAGTTGGTGATGTGATCTTCGCGCCTCATGCCTGGACTCCACATCTTTGGGCGTACGCTCCTTCTCCAAGTTGGGGGATGAATAAGTATAGTCATAGGTGTGAATTGGTGGTGGAGAAGAAATTGTTTTCAATGATAGATGAGTTAGTAGAGAAGTGTAGAGATTTATTGACTAACATTTCATTGCAGGATAACATAGAAGATGCTTGGAAATGGAGTTCTGATGACGTTTATTCTGTCAAAGAAGCTTATTTCCAGATTACTAATGTTAATTCTGTTGAAAATTTGAGTTAA

Protein sequence

>MsG0480022055.01.T01

MQFNVNEKENIENFVQTNIIDPAIKGTINLLKSCLKSNSVKRVVFTSSISTITAKDSNGKWKPIVDESCQIQTDTVWNTQPSGWVSETENYKILSAVNARMGSIALVHIEDICNAHIFLMEHAKAKVGTHEVITGVGDVIFAPHAWTPHLWAYAPSPSWGMNKYSHRCELVVEKKLFSMIDELVEKCRDLLTNISLQDNIEDAWKWSSDDVYSVKEAYFQITNVNSVENLS*