Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029441.01.T01 | AES99926.1 | 78.531 | 177 | 38 | 0 | 1 | 177 | 139 | 315 | 4.43E-94 | 286 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029441.01.T01 | Q9SD53 | 26.163 | 172 | 122 | 4 | 3 | 170 | 285 | 455 | 6.27E-15 | 75.1 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029441.01.T01 | G7KCL7 | 78.531 | 177 | 38 | 0 | 1 | 177 | 139 | 315 | 2.12e-94 | 286 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180003361.01 | MsG0580029441.01 | 0.823648 | 1.236692e-53 | 1.071277e-50 |
MsG0480018909.01 | MsG0580029441.01 | 0.803736 | 3.022920e-49 | 1.530810e-46 |
MsG0480021784.01 | MsG0580029441.01 | 0.803338 | 3.656939e-49 | 1.832917e-46 |
MsG0580024489.01 | MsG0580029441.01 | 0.806035 | 1.000301e-49 | 5.373877e-47 |
MsG0580024690.01 | MsG0580029441.01 | 0.829632 | 4.619076e-55 | 4.754275e-52 |
MsG0380017869.01 | MsG0580029441.01 | 0.828173 | 1.041546e-54 | 1.027316e-51 |
MsG0580027650.01 | MsG0580029441.01 | 0.802001 | 6.899526e-49 | 3.342262e-46 |
MsG0580029441.01 | MsG0680031353.01 | 0.802378 | 5.772514e-49 | 2.823495e-46 |
MsG0580029441.01 | MsG0680031974.01 | 0.800292 | 1.543208e-48 | 7.159329e-46 |
MsG0580029441.01 | MsG0780038424.01 | 0.810137 | 1.338414e-50 | 8.004266e-48 |
MsG0580029441.01 | MsG0780038688.01 | 0.806048 | 9.939074e-50 | 5.341371e-47 |
MsG0580029441.01 | MsG0880043034.01 | 0.800915 | 1.152023e-48 | 5.429669e-46 |
MsG0580029441.01 | MsG0880043516.01 | 0.802277 | 6.054542e-49 | 2.953735e-46 |
MsG0280007414.01 | MsG0580029441.01 | 0.800116 | 1.676189e-48 | 7.741093e-46 |
MsG0280008361.01 | MsG0580029441.01 | 0.802922 | 4.456585e-49 | 2.210152e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029441.01.T01 | MTR_5g086260 | 78.531 | 177 | 38 | 0 | 1 | 177 | 139 | 315 | 5.37e-98 | 286 |
MsG0580029441.01.T01 | MTR_5g086340 | 65.714 | 175 | 59 | 1 | 1 | 175 | 264 | 437 | 2.10e-74 | 230 |
MsG0580029441.01.T01 | MTR_5g087580 | 61.143 | 175 | 67 | 1 | 3 | 177 | 48 | 221 | 9.75e-73 | 218 |
MsG0580029441.01.T01 | MTR_8g042830 | 55.676 | 185 | 72 | 2 | 1 | 176 | 236 | 419 | 4.00e-64 | 203 |
MsG0580029441.01.T01 | MTR_5g016570 | 46.857 | 175 | 91 | 2 | 2 | 175 | 358 | 531 | 2.44e-39 | 140 |
MsG0580029441.01.T01 | MTR_7g011980 | 35.795 | 176 | 110 | 3 | 2 | 175 | 172 | 346 | 2.67e-33 | 121 |
MsG0580029441.01.T01 | MTR_6g010850 | 37.572 | 173 | 105 | 3 | 2 | 172 | 179 | 350 | 4.66e-33 | 121 |
MsG0580029441.01.T01 | MTR_6g011050 | 39.286 | 168 | 99 | 3 | 2 | 167 | 239 | 405 | 3.92e-32 | 119 |
MsG0580029441.01.T01 | MTR_6g010920 | 37.278 | 169 | 102 | 4 | 2 | 167 | 238 | 405 | 1.57e-31 | 117 |
MsG0580029441.01.T01 | MTR_6g011060 | 37.079 | 178 | 105 | 4 | 2 | 175 | 249 | 423 | 2.13e-31 | 117 |
MsG0580029441.01.T01 | MTR_7g060310 | 38.857 | 175 | 102 | 2 | 1 | 171 | 315 | 488 | 3.36e-31 | 117 |
MsG0580029441.01.T01 | MTR_6g009590 | 36.158 | 177 | 110 | 3 | 2 | 176 | 241 | 416 | 3.78e-30 | 114 |
MsG0580029441.01.T01 | MTR_7g059480 | 40.571 | 175 | 95 | 4 | 2 | 170 | 602 | 773 | 9.11e-30 | 114 |
MsG0580029441.01.T01 | MTR_0024s0080 | 36.932 | 176 | 108 | 3 | 2 | 175 | 236 | 410 | 1.98e-29 | 112 |
MsG0580029441.01.T01 | MTR_7g059525 | 39.884 | 173 | 99 | 2 | 2 | 170 | 112 | 283 | 2.85e-29 | 109 |
MsG0580029441.01.T01 | MTR_7g060840 | 38.953 | 172 | 100 | 2 | 3 | 170 | 262 | 432 | 4.07e-29 | 111 |
MsG0580029441.01.T01 | MTR_6g009580 | 35.838 | 173 | 108 | 3 | 2 | 172 | 65 | 236 | 6.15e-29 | 107 |
MsG0580029441.01.T01 | MTR_2g035640 | 33.333 | 165 | 108 | 2 | 2 | 165 | 180 | 343 | 1.08e-28 | 109 |
MsG0580029441.01.T01 | MTR_6g010810 | 36.158 | 177 | 109 | 4 | 2 | 175 | 237 | 412 | 3.03e-28 | 108 |
MsG0580029441.01.T01 | MTR_6g009610 | 35.795 | 176 | 110 | 3 | 2 | 175 | 241 | 415 | 3.07e-28 | 108 |
MsG0580029441.01.T01 | MTR_6g010890 | 34.483 | 174 | 105 | 4 | 2 | 167 | 250 | 422 | 5.22e-28 | 108 |
MsG0580029441.01.T01 | MTR_7g060080 | 35.260 | 173 | 107 | 2 | 2 | 170 | 20 | 191 | 9.27e-28 | 103 |
MsG0580029441.01.T01 | MTR_7g059540 | 38.150 | 173 | 102 | 2 | 2 | 170 | 295 | 466 | 1.62e-27 | 107 |
MsG0580029441.01.T01 | MTR_7g059540 | 38.150 | 173 | 102 | 2 | 2 | 170 | 304 | 475 | 1.62e-27 | 107 |
MsG0580029441.01.T01 | MTR_7g060260 | 38.506 | 174 | 102 | 2 | 2 | 171 | 255 | 427 | 1.80e-27 | 107 |
MsG0580029441.01.T01 | MTR_7g060330 | 38.857 | 175 | 101 | 2 | 1 | 171 | 316 | 488 | 8.27e-27 | 105 |
MsG0580029441.01.T01 | MTR_3g107590 | 34.463 | 177 | 113 | 3 | 2 | 176 | 251 | 426 | 1.01e-26 | 105 |
MsG0580029441.01.T01 | MTR_6g009170 | 37.634 | 186 | 105 | 6 | 2 | 178 | 245 | 428 | 1.52e-26 | 104 |
MsG0580029441.01.T01 | MTR_8g042170 | 33.511 | 188 | 107 | 4 | 2 | 171 | 271 | 458 | 5.60e-26 | 103 |
MsG0580029441.01.T01 | MTR_8g042400 | 33.511 | 188 | 107 | 4 | 2 | 171 | 158 | 345 | 7.07e-25 | 99.0 |
MsG0580029441.01.T01 | MTR_8g037923 | 34.759 | 187 | 96 | 5 | 2 | 166 | 284 | 466 | 2.19e-24 | 99.0 |
MsG0580029441.01.T01 | MTR_8g037920 | 34.659 | 176 | 91 | 4 | 11 | 166 | 234 | 405 | 3.34e-24 | 97.8 |
MsG0580029441.01.T01 | MTR_7g060020 | 34.783 | 184 | 100 | 4 | 2 | 178 | 265 | 435 | 1.13e-23 | 96.7 |
MsG0580029441.01.T01 | MTR_7g059520 | 35.632 | 174 | 97 | 4 | 2 | 170 | 9 | 172 | 1.18e-23 | 92.0 |
MsG0580029441.01.T01 | MTR_7g060320 | 39.655 | 174 | 100 | 2 | 1 | 170 | 292 | 464 | 1.80e-22 | 93.6 |
MsG0580029441.01.T01 | MTR_0182s0060 | 35.838 | 173 | 105 | 3 | 2 | 170 | 346 | 516 | 8.65e-22 | 91.7 |
MsG0580029441.01.T01 | MTR_3g079390 | 30.409 | 171 | 116 | 3 | 2 | 170 | 280 | 449 | 1.82e-21 | 90.5 |
MsG0580029441.01.T01 | MTR_2g036320 | 35.057 | 174 | 103 | 6 | 2 | 167 | 290 | 461 | 2.03e-21 | 90.9 |
MsG0580029441.01.T01 | MTR_7g060115 | 34.254 | 181 | 105 | 3 | 2 | 178 | 285 | 455 | 2.12e-21 | 90.5 |
MsG0580029441.01.T01 | MTR_8g042070 | 32.292 | 192 | 104 | 5 | 2 | 171 | 77 | 264 | 3.74e-20 | 85.1 |
MsG0580029441.01.T01 | MTR_8g005225 | 26.804 | 194 | 120 | 3 | 3 | 176 | 271 | 462 | 3.92e-20 | 87.0 |
MsG0580029441.01.T01 | MTR_6g009600 | 39.623 | 106 | 62 | 2 | 2 | 106 | 27 | 131 | 5.76e-20 | 82.0 |
MsG0580029441.01.T01 | MTR_7g060160 | 32.044 | 181 | 109 | 4 | 2 | 178 | 237 | 407 | 1.64e-19 | 84.7 |
MsG0580029441.01.T01 | MTR_7g446270 | 34.706 | 170 | 106 | 2 | 1 | 166 | 312 | 480 | 3.84e-19 | 84.0 |
MsG0580029441.01.T01 | MTR_7g059510 | 33.143 | 175 | 102 | 4 | 1 | 170 | 253 | 417 | 1.16e-18 | 82.4 |
MsG0580029441.01.T01 | MTR_7g060370 | 36.207 | 174 | 103 | 4 | 2 | 170 | 300 | 470 | 3.44e-18 | 81.3 |
MsG0580029441.01.T01 | MTR_8g005265 | 28.125 | 192 | 116 | 3 | 2 | 173 | 266 | 455 | 5.73e-18 | 80.9 |
MsG0580029441.01.T01 | MTR_2g041180 | 32.584 | 178 | 102 | 8 | 2 | 167 | 274 | 445 | 3.67e-17 | 78.6 |
MsG0580029441.01.T01 | MTR_2g036310 | 32.704 | 159 | 97 | 6 | 20 | 170 | 2 | 158 | 1.06e-16 | 73.6 |
MsG0580029441.01.T01 | MTR_8g005325 | 29.348 | 184 | 104 | 4 | 2 | 163 | 284 | 463 | 1.63e-16 | 76.6 |
MsG0580029441.01.T01 | MTR_7g060220 | 34.104 | 173 | 108 | 3 | 2 | 170 | 266 | 436 | 1.09e-15 | 74.3 |
MsG0580029441.01.T01 | MTR_8g005235 | 27.604 | 192 | 113 | 6 | 2 | 171 | 254 | 441 | 6.34e-15 | 72.0 |
MsG0580029441.01.T01 | MTR_7g059810 | 34.104 | 173 | 108 | 3 | 2 | 170 | 274 | 444 | 2.78e-14 | 70.1 |
MsG0580029441.01.T01 | MTR_0209s0060 | 29.609 | 179 | 98 | 6 | 2 | 161 | 257 | 426 | 6.02e-14 | 69.3 |
MsG0580029441.01.T01 | MTR_0209s0030 | 29.609 | 179 | 98 | 6 | 2 | 161 | 257 | 426 | 6.02e-14 | 69.3 |
MsG0580029441.01.T01 | MTR_8g005295 | 27.072 | 181 | 106 | 4 | 2 | 158 | 319 | 497 | 2.19e-13 | 67.8 |
MsG0580029441.01.T01 | MTR_4g009590 | 28.729 | 181 | 112 | 7 | 6 | 176 | 386 | 559 | 6.58e-13 | 66.2 |
MsG0580029441.01.T01 | MTR_3g107600 | 26.923 | 156 | 86 | 4 | 2 | 156 | 443 | 571 | 1.02e-11 | 62.8 |
MsG0580029441.01.T01 | MTR_4g009620 | 27.419 | 186 | 116 | 8 | 2 | 176 | 380 | 557 | 2.26e-11 | 62.0 |
MsG0580029441.01.T01 | MTR_8g005285 | 25.414 | 181 | 109 | 4 | 2 | 158 | 305 | 483 | 8.78e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029441.01.T01 | AT3G50120 | 42.857 | 175 | 98 | 2 | 2 | 175 | 355 | 528 | 5.76e-41 | 144 |
MsG0580029441.01.T01 | AT3G50160 | 39.429 | 175 | 104 | 2 | 2 | 175 | 325 | 498 | 2.92e-38 | 137 |
MsG0580029441.01.T01 | AT3G50140 | 39.429 | 175 | 104 | 2 | 2 | 175 | 363 | 536 | 6.22e-38 | 136 |
MsG0580029441.01.T01 | AT3G50170 | 39.429 | 175 | 104 | 2 | 2 | 175 | 363 | 536 | 1.48e-37 | 135 |
MsG0580029441.01.T01 | AT3G50150 | 38.857 | 175 | 105 | 2 | 2 | 175 | 333 | 506 | 1.51e-37 | 135 |
MsG0580029441.01.T01 | AT4G31980 | 37.647 | 170 | 103 | 2 | 2 | 170 | 510 | 677 | 4.50e-32 | 121 |
MsG0580029441.01.T01 | AT3G50130 | 38.506 | 174 | 105 | 2 | 2 | 174 | 388 | 560 | 9.68e-31 | 117 |
MsG0580029441.01.T01 | AT3G50180 | 34.270 | 178 | 111 | 2 | 2 | 174 | 408 | 584 | 6.52e-28 | 109 |
MsG0580029441.01.T01 | AT3G50190 | 31.461 | 178 | 117 | 3 | 2 | 175 | 314 | 490 | 1.95e-26 | 104 |
MsG0580029441.01.T01 | AT5G11290 | 32.353 | 170 | 111 | 3 | 2 | 170 | 184 | 350 | 2.77e-26 | 102 |
MsG0580029441.01.T01 | AT5G11290 | 32.353 | 170 | 111 | 3 | 2 | 170 | 253 | 419 | 5.86e-26 | 102 |
MsG0580029441.01.T01 | AT3G60470 | 35.795 | 176 | 110 | 3 | 2 | 176 | 367 | 540 | 2.13e-23 | 96.3 |
MsG0580029441.01.T01 | AT5G22540 | 34.028 | 144 | 92 | 3 | 7 | 148 | 266 | 408 | 7.67e-22 | 91.7 |
MsG0580029441.01.T01 | AT2G44930 | 31.148 | 183 | 114 | 4 | 2 | 178 | 327 | 503 | 3.64e-21 | 90.1 |
MsG0580029441.01.T01 | AT3G47250 | 30.114 | 176 | 119 | 4 | 3 | 175 | 303 | 477 | 8.31e-20 | 86.3 |
MsG0580029441.01.T01 | AT3G47250 | 30.114 | 176 | 119 | 4 | 3 | 175 | 303 | 477 | 8.31e-20 | 86.3 |
MsG0580029441.01.T01 | AT3G47250 | 30.114 | 176 | 119 | 4 | 3 | 175 | 303 | 477 | 8.31e-20 | 86.3 |
MsG0580029441.01.T01 | AT2G36430 | 33.898 | 177 | 114 | 3 | 2 | 176 | 273 | 448 | 1.37e-19 | 85.5 |
MsG0580029441.01.T01 | AT3G44710 | 29.545 | 176 | 122 | 2 | 2 | 175 | 326 | 501 | 1.57e-19 | 85.5 |
MsG0580029441.01.T01 | AT5G22560 | 30.178 | 169 | 115 | 3 | 2 | 168 | 340 | 507 | 4.13e-19 | 84.3 |
MsG0580029441.01.T01 | AT2G28580 | 31.638 | 177 | 109 | 5 | 2 | 172 | 330 | 500 | 5.75e-19 | 84.0 |
MsG0580029441.01.T01 | AT2G28580 | 31.410 | 156 | 97 | 3 | 21 | 172 | 368 | 517 | 5.96e-19 | 83.6 |
MsG0580029441.01.T01 | AT2G28580 | 31.410 | 156 | 97 | 3 | 21 | 172 | 365 | 514 | 6.12e-19 | 83.6 |
MsG0580029441.01.T01 | AT2G28580 | 31.638 | 177 | 109 | 5 | 2 | 172 | 279 | 449 | 6.25e-19 | 83.6 |
MsG0580029441.01.T01 | AT2G28580 | 31.410 | 156 | 97 | 3 | 21 | 172 | 382 | 531 | 6.77e-19 | 83.6 |
MsG0580029441.01.T01 | AT5G22550 | 28.409 | 176 | 123 | 3 | 2 | 175 | 313 | 487 | 5.55e-18 | 80.9 |
MsG0580029441.01.T01 | AT5G22550 | 28.409 | 176 | 123 | 3 | 2 | 175 | 264 | 438 | 6.09e-18 | 80.5 |
MsG0580029441.01.T01 | AT3G47200 | 26.163 | 172 | 122 | 4 | 3 | 170 | 285 | 455 | 6.40e-16 | 75.1 |
MsG0580029441.01.T01 | AT3G47200 | 26.163 | 172 | 122 | 4 | 3 | 170 | 285 | 455 | 6.40e-16 | 75.1 |
MsG0580029441.01.T01 | AT1G67150 | 27.647 | 170 | 122 | 1 | 3 | 172 | 193 | 361 | 4.50e-13 | 66.6 |
MsG0580029441.01.T01 | AT1G67150 | 27.647 | 170 | 122 | 1 | 3 | 172 | 236 | 404 | 4.66e-13 | 66.6 |
MsG0580029441.01.T01 | AT1G67150 | 27.647 | 170 | 122 | 1 | 3 | 172 | 236 | 404 | 4.66e-13 | 66.6 |
MsG0580029441.01.T01 | AT1G67150 | 27.647 | 170 | 122 | 1 | 3 | 172 | 240 | 408 | 4.74e-13 | 66.6 |
MsG0580029441.01.T01 | AT3G02645 | 28.000 | 150 | 105 | 2 | 2 | 149 | 350 | 498 | 3.12e-11 | 61.6 |
Find 38 sgRNAs with CRISPR-Local
Find 44 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCCAACGAGTTGAACAATT+TGG | 0.245536 | 5:-97017715 | None:intergenic |
CGTGTTGTCTACTACTATTA+AGG | 0.283367 | 5:-97017517 | None:intergenic |
AAAAGATGTTACCTTGTTAT+CGG | 0.302978 | 5:-97017592 | None:intergenic |
CCTTCAATCGAGGTGTTCTT+AGG | 0.321521 | 5:+97017487 | MsG0580029441.01.T01:CDS |
CGTTCTCAAGATAGTTGATT+AGG | 0.331878 | 5:-97017680 | None:intergenic |
GAATAATAGTAAGAGCAAAA+AGG | 0.409383 | 5:-97017893 | None:intergenic |
GCTCCAAGGCCATGAGGTTA+AGG | 0.418526 | 5:-97017551 | None:intergenic |
ATTCCTTAACCTCATGGCCT+TGG | 0.421735 | 5:+97017548 | MsG0580029441.01.T01:CDS |
ATGGATTGCAATGGAGAACT+TGG | 0.448261 | 5:+97017750 | MsG0580029441.01.T01:CDS |
ACACTTACTTTAAGAATCCA+TGG | 0.451026 | 5:+97017841 | MsG0580029441.01.T01:CDS |
GTGTTGTCTACTACTATTAA+GGG | 0.456703 | 5:-97017516 | None:intergenic |
CCTAAGAACACCTCGATTGA+AGG | 0.471335 | 5:-97017487 | None:intergenic |
AAGTTCTCCATTGCAATCCA+TGG | 0.472099 | 5:-97017748 | None:intergenic |
GCAATGGAGCTTAAAGAGGC+TGG | 0.505520 | 5:+97017420 | None:intergenic |
AGCCAAATTGTTCAACTCGT+TGG | 0.520680 | 5:+97017713 | MsG0580029441.01.T01:CDS |
AGTTCTCCATTGCAATCCAT+GGG | 0.524419 | 5:-97017747 | None:intergenic |
CACTTACTTTAAGAATCCAT+GGG | 0.526297 | 5:+97017842 | MsG0580029441.01.T01:CDS |
GTAGGAAACCGTGGAAAAGA+TGG | 0.537234 | 5:+97017802 | MsG0580029441.01.T01:CDS |
ATACATATTCCTTAACCTCA+TGG | 0.539977 | 5:+97017542 | MsG0580029441.01.T01:CDS |
ATCTGCAATGGAGCTTAAAG+AGG | 0.545147 | 5:+97017416 | None:intergenic |
ATTCAAACTATATACACAGT+TGG | 0.561149 | 5:+97017912 | MsG0580029441.01.T01:CDS |
CAATGGAGAACTTGGAGAAG+TGG | 0.569190 | 5:+97017758 | MsG0580029441.01.T01:CDS |
CGTAGTTGAAGCCGATAACA+AGG | 0.577409 | 5:+97017581 | MsG0580029441.01.T01:CDS |
AGAGTGTGATTTCTTACTGT+AGG | 0.595533 | 5:+97017784 | MsG0580029441.01.T01:CDS |
ACAAGAGATACAATAGCCCA+TGG | 0.623258 | 5:-97017858 | None:intergenic |
TTTCTTACTGTAGGAAACCG+TGG | 0.625114 | 5:+97017793 | MsG0580029441.01.T01:CDS |
AGTTGATTAGGATATGACTT+CGG | 0.631023 | 5:-97017668 | None:intergenic |
TGTCTACTACTATTAAGGGC+GGG | 0.632807 | 5:-97017512 | None:intergenic |
AACTACGTGGAGACGCTCCA+AGG | 0.645173 | 5:-97017565 | None:intergenic |
AGAGATGTTTCCTTCAATCG+AGG | 0.652766 | 5:+97017477 | MsG0580029441.01.T01:CDS |
TGTTATCGGCTTCAACTACG+TGG | 0.657789 | 5:-97017578 | None:intergenic |
TTCTCCATTGCAATCCATGG+GGG | 0.668558 | 5:-97017745 | None:intergenic |
GCTTCAAGAAAAGCGAAACG+AGG | 0.673060 | 5:+97017448 | MsG0580029441.01.T01:CDS |
TTGTCTACTACTATTAAGGG+CGG | 0.675393 | 5:-97017513 | None:intergenic |
CTTAATAGTAGTAGACAACA+CGG | 0.685653 | 5:+97017518 | MsG0580029441.01.T01:CDS |
GTTCTCCATTGCAATCCATG+GGG | 0.702774 | 5:-97017746 | None:intergenic |
GGAGACGCTCCAAGGCCATG+AGG | 0.715446 | 5:-97017557 | None:intergenic |
GATTGAAGGAAACATCTCTG+AGG | 0.729285 | 5:-97017473 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | ATTCAAACTATATACACAGT+TGG | + | Chr5:97017912-97017931 | MsG0580029441.01.T01:CDS | 25.0% |
! | GAATAATAGTAAGAGCAAAA+AGG | - | Chr5:97017896-97017915 | None:intergenic | 25.0% |
!! | AAAAGATGTTACCTTGTTAT+CGG | - | Chr5:97017595-97017614 | None:intergenic | 25.0% |
!! | AACATCTTTTGTATGCTTTA+TGG | + | Chr5:97017605-97017624 | MsG0580029441.01.T01:CDS | 25.0% |
!! | AGTTGGTCAATTTTATCAAA+AGG | + | Chr5:97017929-97017948 | MsG0580029441.01.T01:CDS | 25.0% |
AGTTGATTAGGATATGACTT+CGG | - | Chr5:97017671-97017690 | None:intergenic | 30.0% | |
ATACATATTCCTTAACCTCA+TGG | + | Chr5:97017542-97017561 | MsG0580029441.01.T01:CDS | 30.0% | |
CTTAATAGTAGTAGACAACA+CGG | + | Chr5:97017518-97017537 | MsG0580029441.01.T01:CDS | 30.0% | |
GTGTTGTCTACTACTATTAA+GGG | - | Chr5:97017519-97017538 | None:intergenic | 30.0% | |
! | ACACTTACTTTAAGAATCCA+TGG | + | Chr5:97017841-97017860 | MsG0580029441.01.T01:CDS | 30.0% |
! | CACTTACTTTAAGAATCCAT+GGG | + | Chr5:97017842-97017861 | MsG0580029441.01.T01:CDS | 30.0% |
! | GGTCAATTTTATCAAAAGGA+GGG | + | Chr5:97017933-97017952 | MsG0580029441.01.T01:CDS | 30.0% |
! | TGGTCAATTTTATCAAAAGG+AGG | + | Chr5:97017932-97017951 | MsG0580029441.01.T01:CDS | 30.0% |
AGAGTGTGATTTCTTACTGT+AGG | + | Chr5:97017784-97017803 | MsG0580029441.01.T01:CDS | 35.0% | |
CGTGTTGTCTACTACTATTA+AGG | - | Chr5:97017520-97017539 | None:intergenic | 35.0% | |
CGTTCTCAAGATAGTTGATT+AGG | - | Chr5:97017683-97017702 | None:intergenic | 35.0% | |
TTGTCTACTACTATTAAGGG+CGG | - | Chr5:97017516-97017535 | None:intergenic | 35.0% | |
AAGAGCAAAAAGGAAGACAG+CGG | - | Chr5:97017886-97017905 | None:intergenic | 40.0% | |
AAGTTCTCCATTGCAATCCA+TGG | - | Chr5:97017751-97017770 | None:intergenic | 40.0% | |
ACAAGAGATACAATAGCCCA+TGG | - | Chr5:97017861-97017880 | None:intergenic | 40.0% | |
AGAGATGTTTCCTTCAATCG+AGG | + | Chr5:97017477-97017496 | MsG0580029441.01.T01:CDS | 40.0% | |
AGCCAAATTGTTCAACTCGT+TGG | + | Chr5:97017713-97017732 | MsG0580029441.01.T01:CDS | 40.0% | |
AGTTCTCCATTGCAATCCAT+GGG | - | Chr5:97017750-97017769 | None:intergenic | 40.0% | |
GATTGAAGGAAACATCTCTG+AGG | - | Chr5:97017476-97017495 | None:intergenic | 40.0% | |
TGTCTACTACTATTAAGGGC+GGG | - | Chr5:97017515-97017534 | None:intergenic | 40.0% | |
TTTCTTACTGTAGGAAACCG+TGG | + | Chr5:97017793-97017812 | MsG0580029441.01.T01:CDS | 40.0% | |
! | ATGGATTGCAATGGAGAACT+TGG | + | Chr5:97017750-97017769 | MsG0580029441.01.T01:CDS | 40.0% |
! | TGCCAACGAGTTGAACAATT+TGG | - | Chr5:97017718-97017737 | None:intergenic | 40.0% |
ATTCCTTAACCTCATGGCCT+TGG | + | Chr5:97017548-97017567 | MsG0580029441.01.T01:CDS | 45.0% | |
CAATGGAGAACTTGGAGAAG+TGG | + | Chr5:97017758-97017777 | MsG0580029441.01.T01:CDS | 45.0% | |
CCTAAGAACACCTCGATTGA+AGG | - | Chr5:97017490-97017509 | None:intergenic | 45.0% | |
CGTAGTTGAAGCCGATAACA+AGG | + | Chr5:97017581-97017600 | MsG0580029441.01.T01:CDS | 45.0% | |
GCTTCAAGAAAAGCGAAACG+AGG | + | Chr5:97017448-97017467 | MsG0580029441.01.T01:CDS | 45.0% | |
GTAGGAAACCGTGGAAAAGA+TGG | + | Chr5:97017802-97017821 | MsG0580029441.01.T01:CDS | 45.0% | |
GTTCTCCATTGCAATCCATG+GGG | - | Chr5:97017749-97017768 | None:intergenic | 45.0% | |
TTCTCCATTGCAATCCATGG+GGG | - | Chr5:97017748-97017767 | None:intergenic | 45.0% | |
! | CCTTCAATCGAGGTGTTCTT+AGG | + | Chr5:97017487-97017506 | MsG0580029441.01.T01:CDS | 45.0% |
!! | TGTTATCGGCTTCAACTACG+TGG | - | Chr5:97017581-97017600 | None:intergenic | 45.0% |
! | CTTGCACGCCATCTTTTCCA+CGG | - | Chr5:97017813-97017832 | None:intergenic | 50.0% |
AACTACGTGGAGACGCTCCA+AGG | - | Chr5:97017568-97017587 | None:intergenic | 55.0% | |
GCTCCAAGGCCATGAGGTTA+AGG | - | Chr5:97017554-97017573 | None:intergenic | 55.0% | |
GTTGGCAAAAGAAGCCCCCA+TGG | + | Chr5:97017731-97017750 | MsG0580029441.01.T01:CDS | 55.0% | |
! | GAAGCCCCCATGGATTGCAA+TGG | + | Chr5:97017741-97017760 | MsG0580029441.01.T01:CDS | 55.0% |
GGAGACGCTCCAAGGCCATG+AGG | - | Chr5:97017560-97017579 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 97017423 | 97017959 | 97017423 | ID=MsG0580029441.01;Name=MsG0580029441.01 |
Chr5 | mRNA | 97017423 | 97017959 | 97017423 | ID=MsG0580029441.01.T01;Parent=MsG0580029441.01;Name=MsG0580029441.01.T01;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|178 |
Chr5 | exon | 97017423 | 97017959 | 97017423 | ID=MsG0580029441.01.T01:exon:24802;Parent=MsG0580029441.01.T01 |
Chr5 | CDS | 97017423 | 97017959 | 97017423 | ID=MsG0580029441.01.T01:cds;Parent=MsG0580029441.01.T01 |
Gene Sequence |
Protein sequence |