AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023194.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023194.01.T01 MTR_8g088840 86.700 203 18 1 1 194 3 205 5.00e-126 363
MsG0480023194.01.T01 MTR_8g088840 86.700 203 18 1 1 194 3 205 9.27e-126 362
MsG0480023194.01.T01 MTR_4g049650 70.443 203 51 2 1 194 1 203 9.26e-95 281
MsG0480023194.01.T01 MTR_8g088800 63.068 176 54 3 28 194 5 178 4.15e-67 211
MsG0480023194.01.T02 MTR_8g088840 53.906 128 22 2 5 132 255 345 1.43e-30 114
MsG0480023194.01.T02 MTR_8g088840 53.906 128 22 2 5 132 255 345 1.51e-30 114
MsG0480023194.01.T02 MTR_4g049650 54.464 112 14 2 5 116 253 327 7.15e-26 101
MsG0480023194.01.T02 MTR_8g088800 42.063 126 31 3 3 128 226 309 2.75e-16 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023194.01.T01 AT1G61000 45.813 203 98 4 1 194 1 200 3.55e-51 171

Find 118 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGGAGTTGAACTATTTC+TGG 0.108708 4:-82068736 None:intergenic
CATACCTGGTTGATAGTTTA+AGG 0.114797 4:-82071871 None:intergenic
TGAGGCCTCTTTACTGTTTA+TGG 0.140836 4:-82073975 None:intergenic
ATACAAATACACATAATTTA+AGG 0.152950 4:+82071825 MsG0480023194.01.T01:three_prime_UTR
CATTCTGTTATAGTTGAAAT+TGG 0.212825 4:+82069452 MsG0480023194.01.T01:intron
AAGTAAATGTTGAGTAATTA+AGG 0.235072 4:-82071985 None:intergenic
ATCCAAAACGACGCCGGTTC+TGG 0.244271 4:-82068803 None:intergenic
AAGTTGAATGTGTATTTCTT+AGG 0.261839 4:-82069095 None:intergenic
GGCAGCAACATTATTCATAT+TGG 0.271571 4:+82072261 MsG0480023194.01.T01:three_prime_UTR
CCCCAGAACCGGCGTCGTTT+TGG 0.274787 4:+82068801 MsG0480023194.01.T01:CDS
AATGATACCTGTACTTTATC+AGG 0.298393 4:-82070026 None:intergenic
ATGACATCTGTTTATTGTTC+AGG 0.300374 4:-82069569 None:intergenic
ACTTTATCAATACAATTTGT+TGG 0.326768 4:+82071947 MsG0480023194.01.T01:three_prime_UTR
TGGCAATTTGAAAGTTGTTT+AGG 0.327054 4:-82068753 None:intergenic
TCGTAAGAGGGAAATGAAAT+TGG 0.336741 4:+82074157 MsG0480023194.01.T01:three_prime_UTR
TATTTCTGGGCGACGAAGCC+TGG 0.337312 4:-82068722 None:intergenic
AAGAGAAATGCCTTCTGTTC+AGG 0.346775 4:+82069503 MsG0480023194.01.T01:CDS
ACTGAACGACAACATCTATA+AGG 0.370533 4:-82072213 None:intergenic
ATTCTTCAATCCTCATTACT+AGG 0.385115 4:-82072137 None:intergenic
CACTTTATCCATTACTTGTC+AGG 0.397770 4:+82072414 MsG0480023194.01.T01:three_prime_UTR
TCCAAAACGACGCCGGTTCT+GGG 0.404325 4:-82068802 None:intergenic
TTCTCAATTTCTGTCTCGAC+AGG 0.407777 4:+82069170 MsG0480023194.01.T01:CDS
AACTCGGTTCGATGAGGATC+AGG 0.411529 4:-82069134 None:intergenic
GACTGTGGAAATGGATGATA+AGG 0.411995 4:+82069622 MsG0480023194.01.T01:three_prime_UTR
TTCTAGTGCTGAATATAAAC+TGG 0.418483 4:+82069953 MsG0480023194.01.T01:three_prime_UTR
ATTCCCTCCATACAAAACTA+TGG 0.424020 4:+82071594 MsG0480023194.01.T01:three_prime_UTR
TAAAGTGATCTGTATTATCT+AGG 0.425831 4:-82072398 None:intergenic
CAAAGATATACAACCCAAAA+GGG 0.427363 4:-82072036 None:intergenic
GACCTCTCCAACCCCAGAAC+CGG 0.432944 4:+82068790 MsG0480023194.01.T01:CDS
AAAACATCTTATTTATATCA+AGG 0.441531 4:-82071702 None:intergenic
TTAGGAGTTGAACTATTTCT+GGG 0.443565 4:-82068735 None:intergenic
TCAAAGATATACAACCCAAA+AGG 0.445291 4:-82072037 None:intergenic
GAAGGAGAGGACTGTGGAAA+TGG 0.451566 4:+82069613 MsG0480023194.01.T01:three_prime_UTR
GTCTGGACAAATTGACTACT+TGG 0.451688 4:-82072074 None:intergenic
AAGTACTATAAAGAAGTTGA+AGG 0.454355 4:+82069595 MsG0480023194.01.T01:three_prime_UTR
CTTGCATGAAGAGAGCTTTG+AGG 0.454841 4:+82071456 MsG0480023194.01.T01:intron
ATTTCTGGGCGACGAAGCCT+GGG 0.463415 4:-82068721 None:intergenic
ATGGATCCAACGTGAAGATC+AGG 0.466945 4:-82069017 None:intergenic
CTATCACAACCCCACAAAAC+CGG 0.468358 4:+82073295 MsG0480023194.01.T01:intron
TTTGTGTACCTGACAAGTAA+TGG 0.471638 4:-82072422 None:intergenic
CATACCTCATGAGTCGTAAG+AGG 0.478432 4:+82074144 MsG0480023194.01.T01:three_prime_UTR
AGAATCTGCAACAATTAAAG+TGG 0.479517 4:+82074001 MsG0480023194.01.T01:three_prime_UTR
CTAGAATGAGAATTGCTACA+AGG 0.485044 4:-82072305 None:intergenic
TTCTTCAATCCTCATTACTA+GGG 0.487298 4:-82072136 None:intergenic
AACGACGCCGGTTCTGGGGT+TGG 0.494116 4:-82068797 None:intergenic
AAGCAGTTTGAGAAAGAATG+TGG 0.494844 4:+82073592 MsG0480023194.01.T01:three_prime_UTR
CTTCAATATAATAGAGCTAG+TGG 0.495430 4:+82072163 MsG0480023194.01.T01:three_prime_UTR
TCCCTCATCAGTTGAGCATA+CGG 0.495984 4:+82073558 MsG0480023194.01.T01:intron
CTCTTACGACTCATGAGGTA+TGG 0.500144 4:-82074143 None:intergenic
TGTGGTTTCATGACGGATGA+AGG 0.517102 4:+82073610 MsG0480023194.01.T01:three_prime_UTR
TATTCTTAGAAATTGCGGTT+GGG 0.519107 4:+82073271 MsG0480023194.01.T01:intron
AACAATTAAAGTGGATCAGA+TGG 0.521990 4:+82074010 MsG0480023194.01.T01:three_prime_UTR
AACACCGTTTGACAATGGTC+TGG 0.522074 4:-82072091 None:intergenic
AATGCGATATCAGAAATTGT+AGG 0.523805 4:+82069299 MsG0480023194.01.T01:intron
TTTCCAAGGTATGTTGTCAC+AGG 0.524470 4:+82071566 MsG0480023194.01.T01:three_prime_UTR
AGGATTGGAGCTCACTTGAC+AGG 0.527282 4:-82074291 None:intergenic
CAGAAATTGAGAAGAGCACA+AGG 0.528436 4:-82069160 None:intergenic
CCCCACAAAACCGGCTTGTG+AGG 0.530091 4:+82073304 MsG0480023194.01.T01:intron
ATGATTATTCTTAGAAATTG+CGG 0.530141 4:+82073266 MsG0480023194.01.T01:intron
GTAAAGCTTGATAGCGTGAA+TGG 0.532383 4:-82069036 None:intergenic
TATCTTCTTCAACCGCTACT+CGG 0.533638 4:-82068677 None:intergenic
GTACAAAATGTTCAAGAGCA+TGG 0.533679 4:+82069975 MsG0480023194.01.T01:three_prime_UTR
GCAGTGTGTAGAACAAGGAT+TGG 0.535168 4:-82074306 None:intergenic
TGTAGGCGAATTCAACGCGT+TGG 0.538926 4:+82069316 MsG0480023194.01.T01:CDS
TTATTCTTAGAAATTGCGGT+TGG 0.539529 4:+82073270 MsG0480023194.01.T01:intron
AATGCCTTCTGTTCAGGAGG+TGG 0.540178 4:+82069509 MsG0480023194.01.T01:CDS
CAACAAGGGCAGTCTTCTCA+TGG 0.541457 4:-82071537 None:intergenic
CAAGCTTTACAACAAGATCA+AGG 0.542989 4:+82069049 MsG0480023194.01.T01:CDS
GGTGCATGCAATACAAGAGC+AGG 0.547295 4:+82072467 MsG0480023194.01.T01:three_prime_UTR
TTGTCCAGACCATTGTCAAA+CGG 0.548745 4:+82072087 MsG0480023194.01.T01:three_prime_UTR
GGAGAGGTCGTTCTCTGTAA+CGG 0.551483 4:-82068776 None:intergenic
CGTCCTGTGACAACATACCT+TGG 0.551486 4:-82071569 None:intergenic
GAGGTCGTTCTCTGTAACGG+TGG 0.563344 4:-82068773 None:intergenic
TTGCTGAATGCAATGAAGCA+AGG 0.563783 4:+82069478 MsG0480023194.01.T01:CDS
GAAGTTGAAGGAGAGGACTG+TGG 0.566165 4:+82069607 MsG0480023194.01.T01:three_prime_UTR
CGCCGGTTCTGGGGTTGGAG+AGG 0.567983 4:-82068792 None:intergenic
GTGGATATTTAAAACACCCA+TGG 0.568147 4:-82071647 None:intergenic
TGCTGAATGCAATGAAGCAA+GGG 0.574995 4:+82069479 MsG0480023194.01.T01:CDS
AAAAGTAAACTGCATCTCAT+GGG 0.576845 4:+82072342 MsG0480023194.01.T01:three_prime_UTR
GCTTCCACCTCCTGAACAGA+AGG 0.580189 4:-82069513 None:intergenic
AATGTCAAAGCACTACAAGC+AGG 0.581236 4:+82072446 MsG0480023194.01.T01:three_prime_UTR
AGACCATTGTCAAACGGTGT+TGG 0.582045 4:+82072093 MsG0480023194.01.T01:three_prime_UTR
GGAGAAAATCGAGGTAGTTG+AGG 0.585716 4:-82068840 None:intergenic
CTATAAAGAAGTTGAAGGAG+AGG 0.589917 4:+82069600 MsG0480023194.01.T01:three_prime_UTR
ATTGTTGCAGATTCTTACTG+AGG 0.590011 4:-82073993 None:intergenic
GTAATCCTCACCTCACAAGC+CGG 0.591008 4:-82073314 None:intergenic
CCTAAGCAGTATAAAATCAG+AGG 0.594871 4:+82073642 MsG0480023194.01.T01:three_prime_UTR
TCATCAGTTGAGCATACGGA+AGG 0.597109 4:+82073562 MsG0480023194.01.T01:intron
GGATGCCATAAACAGTAAAG+AGG 0.598178 4:+82073970 MsG0480023194.01.T01:three_prime_UTR
CCAAAACGACGCCGGTTCTG+GGG 0.606248 4:-82068801 None:intergenic
TGAAGAGAATAAGATTACAC+AGG 0.606538 4:+82069358 MsG0480023194.01.T01:CDS
TCAATCGCCTGATAAAGTAC+AGG 0.611191 4:+82070019 MsG0480023194.01.T01:three_prime_UTR
CTTCTCATGGAAATTGTGCA+TGG 0.612119 4:-82071524 None:intergenic
TGTTGAGGCTATGTTATCGA+AGG 0.614295 4:+82073704 MsG0480023194.01.T01:three_prime_UTR
TTTCCCTCTTACGACTCATG+AGG 0.615142 4:-82074148 None:intergenic
CAAGGTATGTTGTCACAGGA+CGG 0.617641 4:+82071570 MsG0480023194.01.T01:three_prime_UTR
TTCAATATAATAGAGCTAGT+GGG 0.622516 4:+82072164 MsG0480023194.01.T01:three_prime_UTR
GAGAATCCTGATCTTCACGT+TGG 0.626453 4:+82069011 MsG0480023194.01.T01:CDS
AAAGATATACAACCCAAAAG+GGG 0.631912 4:-82072035 None:intergenic
TGTCGAACTACGAATACCCC+AGG 0.633001 4:+82068704 MsG0480023194.01.T01:CDS
GTAGAGATCCAAAACGACGC+CGG 0.633388 4:-82068809 None:intergenic
ATACCTCATGAGTCGTAAGA+GGG 0.640140 4:+82074145 MsG0480023194.01.T01:three_prime_UTR
AGAAATGCCTTCTGTTCAGG+AGG 0.641002 4:+82069506 MsG0480023194.01.T01:CDS
AAAGAAATTAGCTCGAGACG+AGG 0.643031 4:+82071480 MsG0480023194.01.T01:three_prime_UTR
AAGATATACAACCCAAAAGG+GGG 0.651956 4:-82072034 None:intergenic
CAAAGACAAATCATACCTCG+TGG 0.654486 4:-82071666 None:intergenic
AAACAAGACAGAAAATGTTG+AGG 0.654770 4:+82073689 MsG0480023194.01.T01:three_prime_UTR
ACACGGCAGTGTGTAGAACA+AGG 0.655928 4:-82074311 None:intergenic
AGTCCAACACCGTTTGACAA+TGG 0.661365 4:-82072096 None:intergenic
ATTTCTCACAGCGAAGACAA+CGG 0.661952 4:+82068957 MsG0480023194.01.T01:intron
ACAATTCTGAGTCCGAGTAG+CGG 0.677637 4:+82068665 MsG0480023194.01.T01:five_prime_UTR
AAAGCCTTAAACTATCAACC+AGG 0.677969 4:+82071867 MsG0480023194.01.T01:three_prime_UTR
AAGCAGTATAAAATCAGAGG+CGG 0.680414 4:+82073645 MsG0480023194.01.T01:three_prime_UTR
CATCAGTTGAGCATACGGAA+GGG 0.682691 4:+82073563 MsG0480023194.01.T01:intron
AATTACAATCAACATTAACA+CGG 0.686431 4:-82074328 None:intergenic
GAAAGAATGTGGTTTCATGA+CGG 0.687011 4:+82073603 MsG0480023194.01.T01:three_prime_UTR
GTTACTCGTGGAGAAAATCG+AGG 0.705965 4:-82068849 None:intergenic
TTTCTGGGCGACGAAGCCTG+GGG 0.708948 4:-82068720 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAAAAAAAATGGTATT+TGG + Chr4:82071085-82071104 MsG0480023194.01.T01:intron 10.0%
!!! ATTTTCAAAATTTAACAATT+AGG - Chr4:82069263-82069282 None:intergenic 10.0%
!!! TTTTTTATACAAGAAAATTA+TGG - Chr4:82070394-82070413 None:intergenic 10.0%
!! AATATATATTAATTCTGTGT+TGG + Chr4:82069852-82069871 MsG0480023194.01.T01:intron 15.0%
!! ACAGTAAGAATAAAAATTAA+AGG - Chr4:82074242-82074261 None:intergenic 15.0%
!! ATACAAATACACATAATTTA+AGG + Chr4:82071825-82071844 MsG0480023194.01.T01:three_prime_UTR 15.0%
!! ATTAGTTATTTACTGAAAAT+GGG - Chr4:82070758-82070777 None:intergenic 15.0%
!! TATTAGTTATTTACTGAAAA+TGG - Chr4:82070759-82070778 None:intergenic 15.0%
!! TTTATGTGAATAATTAATGT+TGG + Chr4:82069754-82069773 MsG0480023194.01.T01:intron 15.0%
!!! AAAACATCTTATTTATATCA+AGG - Chr4:82071705-82071724 None:intergenic 15.0%
!!! AATAACAAAACTTTTATGTT+TGG + Chr4:82074395-82074414 MsG0480023194.01.T01:three_prime_UTR 15.0%
!!! ATAACAAAACTTTTATGTTT+GGG + Chr4:82074396-82074415 MsG0480023194.01.T01:three_prime_UTR 15.0%
!!! ATTGTTAAATTTTGAAAATC+AGG + Chr4:82069264-82069283 MsG0480023194.01.T01:intron 15.0%
!!! ATTTTGTAAATGCATTTTAT+TGG + Chr4:82070152-82070171 MsG0480023194.01.T01:intron 15.0%
!!! TCATTATTCATATTTCTTTT+TGG + Chr4:82072240-82072259 MsG0480023194.01.T01:three_prime_UTR 15.0%
!!! TTGTTAAATTTTGAAAATCA+GGG + Chr4:82069265-82069284 MsG0480023194.01.T01:intron 15.0%
!!! TTTGTTATTTTGGATTTAAA+TGG + Chr4:82072597-82072616 MsG0480023194.01.T01:intron 15.0%
!! AAAAAAATAAACTTCATACC+TGG - Chr4:82071888-82071907 None:intergenic 20.0%
!! AAAACATTAAAAGCTAAACT+TGG + Chr4:82073025-82073044 MsG0480023194.01.T01:three_prime_UTR 20.0%
!! AACAGTGATAAAAAAATTCA+TGG - Chr4:82071333-82071352 None:intergenic 20.0%
!! AAGAAAATTATGGAATATGA+AGG - Chr4:82070384-82070403 None:intergenic 20.0%
!! AAGTAAATGTTGAGTAATTA+AGG - Chr4:82071988-82072007 None:intergenic 20.0%
!! AATTACAATCAACATTAACA+CGG - Chr4:82074331-82074350 None:intergenic 20.0%
!! ACTTTATCAATACAATTTGT+TGG + Chr4:82071947-82071966 MsG0480023194.01.T01:three_prime_UTR 20.0%
!! ATGATTATTCTTAGAAATTG+CGG + Chr4:82073266-82073285 MsG0480023194.01.T01:intron 20.0%
!! ATTAGTTGTTCTTTAATGTT+GGG - Chr4:82070464-82070483 None:intergenic 20.0%
!! ATTATGCTAAACTTCATTAT+CGG - Chr4:82069658-82069677 None:intergenic 20.0%
!! ATTGAAAAGAAACAAATTGT+AGG + Chr4:82071264-82071283 MsG0480023194.01.T01:intron 20.0%
!! TAAGGAAAGCAAATTTAAAT+AGG - Chr4:82071435-82071454 None:intergenic 20.0%
!! TATTAGTTGTTCTTTAATGT+TGG - Chr4:82070465-82070484 None:intergenic 20.0%
!! TGAATAATTAATGTTGGATT+AGG + Chr4:82069760-82069779 MsG0480023194.01.T01:intron 20.0%
!! TTTCTATTCCACTTAATAAA+TGG - Chr4:82073732-82073751 None:intergenic 20.0%
!!! AGCTTTTTCTTTTGTTATTT+TGG + Chr4:82072587-82072606 MsG0480023194.01.T01:intron 20.0%
!!! AGGTTAGTTTATTAGTTAAT+GGG + Chr4:82070562-82070581 MsG0480023194.01.T01:intron 20.0%
!!! ATTTTAATTTATGTGTGTGT+TGG + Chr4:82069403-82069422 MsG0480023194.01.T01:intron 20.0%
!!! ATTTTGAATTTTGAATCACA+CGG + Chr4:82068628-82068647 MsG0480023194.01.T01:five_prime_UTR 20.0%
!!! TAATGTTGATTGTAATTTTG+AGG + Chr4:82074334-82074353 MsG0480023194.01.T01:three_prime_UTR 20.0%
!!! TGAATTTTTTTATCACTGTT+CGG + Chr4:82071333-82071352 MsG0480023194.01.T01:intron 20.0%
!!! TTATTTTGTTTCAAAACCAT+GGG + Chr4:82071631-82071650 MsG0480023194.01.T01:three_prime_UTR 20.0%
!!! TTTATTTTGTTTCAAAACCA+TGG + Chr4:82071630-82071649 MsG0480023194.01.T01:three_prime_UTR 20.0%
! AACATCAAGAAGTAAGAATA+TGG - Chr4:82069686-82069705 None:intergenic 25.0%
! AAGCAAATTTAAATAGGTAG+AGG - Chr4:82071429-82071448 None:intergenic 25.0%
! AAGTACTATAAAGAAGTTGA+AGG + Chr4:82069595-82069614 MsG0480023194.01.T01:three_prime_UTR 25.0%
! AAGTTGAATGTGTATTTCTT+AGG - Chr4:82069098-82069117 None:intergenic 25.0%
! AGTCTATTTAAACTAACTAG+TGG + Chr4:82072821-82072840 MsG0480023194.01.T01:intron 25.0%
! AGTTATTGTTAGTTAAGAAG+TGG + Chr4:82070530-82070549 MsG0480023194.01.T01:intron 25.0%
! ATAGACTATTCTAAACCTAA+TGG - Chr4:82072808-82072827 None:intergenic 25.0%
! ATATTCTTACTTCTTGATGT+TGG + Chr4:82069685-82069704 MsG0480023194.01.T01:intron 25.0%
! CAAAATGAATCAATGACATT+TGG - Chr4:82070881-82070900 None:intergenic 25.0%
! CATTCTGTTATAGTTGAAAT+TGG + Chr4:82069452-82069471 MsG0480023194.01.T01:intron 25.0%
! GAAATCATTACAAGATAACA+TGG - Chr4:82073467-82073486 None:intergenic 25.0%
! GTATTATATCAATTACCAAC+AGG - Chr4:82074093-82074112 None:intergenic 25.0%
! TAAAGTGATCTGTATTATCT+AGG - Chr4:82072401-82072420 None:intergenic 25.0%
! TAGACTATTCTAAACCTAAT+GGG - Chr4:82072807-82072826 None:intergenic 25.0%
! TATGAATTTATCCCTCTATA+TGG + Chr4:82072554-82072573 MsG0480023194.01.T01:intron 25.0%
! TATTCTTACTTCTTGATGTT+GGG + Chr4:82069686-82069705 MsG0480023194.01.T01:intron 25.0%
! TTAAGAAGTGGTTATTTAAG+AGG + Chr4:82070542-82070561 MsG0480023194.01.T01:intron 25.0%
! TTCAATATAATAGAGCTAGT+GGG + Chr4:82072164-82072183 MsG0480023194.01.T01:three_prime_UTR 25.0%
! TTCTGCTAAAACTATTGAAA+AGG + Chr4:82072997-82073016 MsG0480023194.01.T01:three_prime_UTR 25.0%
!! AACAATTAGGTCATGTTTTA+GGG - Chr4:82069250-82069269 None:intergenic 25.0%
!! AATGGTATTTGGTTTAAAAC+AGG + Chr4:82071096-82071115 MsG0480023194.01.T01:intron 25.0%
!! TAACAATTAGGTCATGTTTT+AGG - Chr4:82069251-82069270 None:intergenic 25.0%
!! TTTCTTCTCATGTAGATTTT+GGG + Chr4:82071907-82071926 MsG0480023194.01.T01:three_prime_UTR 25.0%
!! TTTTCTTCTCATGTAGATTT+TGG + Chr4:82071906-82071925 MsG0480023194.01.T01:three_prime_UTR 25.0%
!!! AAAAACACCATAGTTTTGTA+TGG - Chr4:82071604-82071623 None:intergenic 25.0%
!!! AAATTTTGAAAATCAGGGAT+GGG + Chr4:82069270-82069289 MsG0480023194.01.T01:intron 25.0%
!!! GAGGTTAGTTTATTAGTTAA+TGG + Chr4:82070561-82070580 MsG0480023194.01.T01:intron 25.0%
!!! TAAATTTTGAAAATCAGGGA+TGG + Chr4:82069269-82069288 MsG0480023194.01.T01:intron 25.0%
!!! TCATTGATTCATTTTGTTGT+GGG + Chr4:82070885-82070904 MsG0480023194.01.T01:intron 25.0%
!!! TTTGATTTTGTGAACAGAAT+AGG - Chr4:82070069-82070088 None:intergenic 25.0%
!!! TTTTGTTTTTACGAGATTGT+TGG + Chr4:82071721-82071740 MsG0480023194.01.T01:three_prime_UTR 25.0%
AAAAAGTAAACTGCATCTCA+TGG + Chr4:82072341-82072360 MsG0480023194.01.T01:three_prime_UTR 30.0%
AAAACTGTTGACAAATTACC+TGG + Chr4:82073205-82073224 MsG0480023194.01.T01:intron 30.0%
AAAAGTAAACTGCATCTCAT+GGG + Chr4:82072342-82072361 MsG0480023194.01.T01:three_prime_UTR 30.0%
AAACAAGACAGAAAATGTTG+AGG + Chr4:82073689-82073708 MsG0480023194.01.T01:three_prime_UTR 30.0%
AAAGATATACAACCCAAAAG+GGG - Chr4:82072038-82072057 None:intergenic 30.0%
AACAATTAAAGTGGATCAGA+TGG + Chr4:82074010-82074029 MsG0480023194.01.T01:three_prime_UTR 30.0%
AAGATTGAAGATTGAGAGAA+GGG - Chr4:82068884-82068903 None:intergenic 30.0%
AATGATACCTGTACTTTATC+AGG - Chr4:82070029-82070048 None:intergenic 30.0%
AATGCGATATCAGAAATTGT+AGG + Chr4:82069299-82069318 MsG0480023194.01.T01:intron 30.0%
AGAATCTGCAACAATTAAAG+TGG + Chr4:82074001-82074020 MsG0480023194.01.T01:three_prime_UTR 30.0%
AGCATTTAAAAACAGAACCA+CGG - Chr4:82070855-82070874 None:intergenic 30.0%
ATCCCTTTGATTACAAACAA+TGG - Chr4:82070735-82070754 None:intergenic 30.0%
ATGACATCTGTTTATTGTTC+AGG - Chr4:82069572-82069591 None:intergenic 30.0%
ATTAGGACATTTAACCCTTT+CGG + Chr4:82069777-82069796 MsG0480023194.01.T01:intron 30.0%
ATTCTTACTTCTTGATGTTG+GGG + Chr4:82069687-82069706 MsG0480023194.01.T01:intron 30.0%
ATTCTTCAATCCTCATTACT+AGG - Chr4:82072140-82072159 None:intergenic 30.0%
ATTTCTTTAGCACTTCCTTT+AGG + Chr4:82072970-82072989 MsG0480023194.01.T01:intron 30.0%
CAAAGATATACAACCCAAAA+GGG - Chr4:82072039-82072058 None:intergenic 30.0%
CTTCAATATAATAGAGCTAG+TGG + Chr4:82072163-82072182 MsG0480023194.01.T01:three_prime_UTR 30.0%
CTTGGAAAAAACTTCAACAA+GGG - Chr4:82071554-82071573 None:intergenic 30.0%
GAAGGAGACATAAATTATGT+TGG - Chr4:82070366-82070385 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG - Chr4:82072679-82072698 None:intergenic 30.0%
GGAACTAAATTGAAAGTAAG+TGG + Chr4:82071285-82071304 MsG0480023194.01.T01:intron 30.0%
TAATCCTCCTCTCTATTTAT+AGG - Chr4:82070636-82070655 None:intergenic 30.0%
TACCAATTGATAGAACATAC+AGG - Chr4:82070787-82070806 None:intergenic 30.0%
TACCTGTATGTTCTATCAAT+TGG + Chr4:82070782-82070801 MsG0480023194.01.T01:intron 30.0%
TATGGAAGAAATTTCAGTAG+AGG + Chr4:82069723-82069742 MsG0480023194.01.T01:intron 30.0%
TATTCTTAGAAATTGCGGTT+GGG + Chr4:82073271-82073290 MsG0480023194.01.T01:intron 30.0%
TCAAAGATATACAACCCAAA+AGG - Chr4:82072040-82072059 None:intergenic 30.0%
TCAGTGTTTATACTTTCCAA+TGG - Chr4:82073758-82073777 None:intergenic 30.0%
TGAAGAGAATAAGATTACAC+AGG + Chr4:82069358-82069377 MsG0480023194.01.T01:CDS 30.0%
TGCACAATAACTATCTTTGA+AGG - Chr4:82072936-82072955 None:intergenic 30.0%
TGCATTTACAAAATTCACAC+AGG - Chr4:82070146-82070165 None:intergenic 30.0%
TGCCATTGTTTGTAATCAAA+GGG + Chr4:82070730-82070749 MsG0480023194.01.T01:intron 30.0%
TGCTAAAGAAATCAAACAAG+AGG - Chr4:82072962-82072981 None:intergenic 30.0%
TGGCAATTTGAAAGTTGTTT+AGG - Chr4:82068756-82068775 None:intergenic 30.0%
TTACAAAATTCACACAGGAT+GGG - Chr4:82070141-82070160 None:intergenic 30.0%
TTAGCATGACGATTGAAATT+TGG + Chr4:82072530-82072549 MsG0480023194.01.T01:intron 30.0%
TTATTCTTAGAAATTGCGGT+TGG + Chr4:82073270-82073289 MsG0480023194.01.T01:intron 30.0%
TTCTTCAATCCTCATTACTA+GGG - Chr4:82072139-82072158 None:intergenic 30.0%
TTGGTTGAAAATCAAAGCAA+AGG + Chr4:82073084-82073103 MsG0480023194.01.T01:three_prime_UTR 30.0%
TTTACAAAATTCACACAGGA+TGG - Chr4:82070142-82070161 None:intergenic 30.0%
TTTAGGAGTTGAACTATTTC+TGG - Chr4:82068739-82068758 None:intergenic 30.0%
! AACTATCTTTGAAGGAAGAA+AGG - Chr4:82072928-82072947 None:intergenic 30.0%
! ATTTATGTGTGTGTTGGTAT+TGG + Chr4:82069409-82069428 MsG0480023194.01.T01:intron 30.0%
! TACAGGTATCATTTTCATGT+TGG + Chr4:82070036-82070055 MsG0480023194.01.T01:intron 30.0%
! TAGAAATCTGAGGTAACAAA+AGG - Chr4:82069938-82069957 None:intergenic 30.0%
! TATTTCAAGTGAATACCCTT+TGG - Chr4:82071188-82071207 None:intergenic 30.0%
! TCTTCAACAGACTGATTTAA+AGG - Chr4:82071222-82071241 None:intergenic 30.0%
! TTAGGAGTTGAACTATTTCT+GGG - Chr4:82068738-82068757 None:intergenic 30.0%
! TTCTAGTGCTGAATATAAAC+TGG + Chr4:82069953-82069972 MsG0480023194.01.T01:three_prime_UTR 30.0%
! TTGAATTTTCCCTAGTAATG+AGG + Chr4:82072127-82072146 MsG0480023194.01.T01:three_prime_UTR 30.0%
! TTTTAGCAGAATTGACCTAA+AGG - Chr4:82072988-82073007 None:intergenic 30.0%
!! ATTAATTCTGTGTTGGTAGT+TGG + Chr4:82069859-82069878 MsG0480023194.01.T01:intron 30.0%
!! TATAGGCAGCATGTTTTATT+TGG - Chr4:82070619-82070638 None:intergenic 30.0%
!! TGTTGCCATTTATCTTCTTT+TGG + Chr4:82074064-82074083 MsG0480023194.01.T01:intron 30.0%
!!! GTCATTGATTCATTTTGTTG+TGG + Chr4:82070884-82070903 MsG0480023194.01.T01:intron 30.0%
AAAGCCTTAAACTATCAACC+AGG + Chr4:82071867-82071886 MsG0480023194.01.T01:three_prime_UTR 35.0%
AACTTAATACATGCATAGCC+TGG + Chr4:82070264-82070283 MsG0480023194.01.T01:intron 35.0%
AAGATATACAACCCAAAAGG+GGG - Chr4:82072037-82072056 None:intergenic 35.0%
AAGCAGTATAAAATCAGAGG+CGG + Chr4:82073645-82073664 MsG0480023194.01.T01:three_prime_UTR 35.0%
AAGCAGTTTGAGAAAGAATG+TGG + Chr4:82073592-82073611 MsG0480023194.01.T01:three_prime_UTR 35.0%
AATTCAGCCTTTGTACCAAA+GGG + Chr4:82071170-82071189 MsG0480023194.01.T01:intron 35.0%
ACACCAAAGTCACAACATAA+GGG + Chr4:82070493-82070512 MsG0480023194.01.T01:intron 35.0%
ACTGAACGACAACATCTATA+AGG - Chr4:82072216-82072235 None:intergenic 35.0%
AGTCAAATAGCTATAGGACA+GGG - Chr4:82072497-82072516 None:intergenic 35.0%
AGTGGAATAGAAAACTCCAT+TGG + Chr4:82073739-82073758 MsG0480023194.01.T01:intron 35.0%
ATGTATTCCACCCATTAATC+AGG + Chr4:82072781-82072800 MsG0480023194.01.T01:intron 35.0%
ATTCCCTCCATACAAAACTA+TGG + Chr4:82071594-82071613 MsG0480023194.01.T01:three_prime_UTR 35.0%
ATTGTTGCAGATTCTTACTG+AGG - Chr4:82073996-82074015 None:intergenic 35.0%
ATTTAAAAACAGAACCACGG+TGG - Chr4:82070852-82070871 None:intergenic 35.0%
ATTTCTTGTCTGCAATTGAC+AGG + Chr4:82073946-82073965 MsG0480023194.01.T01:intron 35.0%
CAAGCTTTACAACAAGATCA+AGG + Chr4:82069049-82069068 MsG0480023194.01.T01:CDS 35.0%
CAATTGGTATAAGCTCTTTG+TGG + Chr4:82070798-82070817 MsG0480023194.01.T01:intron 35.0%
CACTTTATCCATTACTTGTC+AGG + Chr4:82072414-82072433 MsG0480023194.01.T01:three_prime_UTR 35.0%
CCATTTCTGCAAAATCATGA+AGG + Chr4:82069215-82069234 MsG0480023194.01.T01:intron 35.0%
CCTAAGCAGTATAAAATCAG+AGG + Chr4:82073642-82073661 MsG0480023194.01.T01:three_prime_UTR 35.0%
CCTTGGAAAAAACTTCAACA+AGG - Chr4:82071555-82071574 None:intergenic 35.0%
CTAACAATAACTGACCTAAC+AGG - Chr4:82070522-82070541 None:intergenic 35.0%
CTAGAATGAGAATTGCTACA+AGG - Chr4:82072308-82072327 None:intergenic 35.0%
CTATAAAGAAGTTGAAGGAG+AGG + Chr4:82069600-82069619 MsG0480023194.01.T01:three_prime_UTR 35.0%
CTGCCATTGTTTGTAATCAA+AGG + Chr4:82070729-82070748 MsG0480023194.01.T01:intron 35.0%
GAAAGAATGTGGTTTCATGA+CGG + Chr4:82073603-82073622 MsG0480023194.01.T01:three_prime_UTR 35.0%
GAAAGTAAGTGGAAACTAGA+GGG + Chr4:82071296-82071315 MsG0480023194.01.T01:intron 35.0%
GAAGATTGAAGATTGAGAGA+AGG - Chr4:82068885-82068904 None:intergenic 35.0%
GAATTTATCCCTCTATATGG+AGG + Chr4:82072557-82072576 MsG0480023194.01.T01:intron 35.0%
GACATGAGTCAAATAGCTAT+AGG - Chr4:82072503-82072522 None:intergenic 35.0%
GAGGTGAAATCGTAAGAAAT+TGG + Chr4:82070939-82070958 MsG0480023194.01.T01:intron 35.0%
GGCAGCAACATTATTCATAT+TGG + Chr4:82072261-82072280 MsG0480023194.01.T01:three_prime_UTR 35.0%
GGCTTCCAAAAGAAGATAAA+TGG - Chr4:82074072-82074091 None:intergenic 35.0%
GTACAAAATGTTCAAGAGCA+TGG + Chr4:82069975-82069994 MsG0480023194.01.T01:three_prime_UTR 35.0%
GTGGTAACCACACAAAATTA+AGG - Chr4:82070182-82070201 None:intergenic 35.0%
TAATTGGTGTAGGAGATTTG+AGG + Chr4:82070920-82070939 MsG0480023194.01.T01:intron 35.0%
TACAAAATTCACACAGGATG+GGG - Chr4:82070140-82070159 None:intergenic 35.0%
TACAAGATAACATGGTGTAG+TGG - Chr4:82073459-82073478 None:intergenic 35.0%
TATTCAGCACTAGAAATCTG+AGG - Chr4:82069948-82069967 None:intergenic 35.0%
TCGTAAGAGGGAAATGAAAT+TGG + Chr4:82074157-82074176 MsG0480023194.01.T01:three_prime_UTR 35.0%
TGAAAGAAAATGCAAACGAG+TGG - Chr4:82073891-82073910 None:intergenic 35.0%
TGAAAGTAAGTGGAAACTAG+AGG + Chr4:82071295-82071314 MsG0480023194.01.T01:intron 35.0%
TGCAAGTTACATAACCGAAA+GGG - Chr4:82069794-82069813 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+CGG - Chr4:82072674-82072693 None:intergenic 35.0%
TTTGTGTACCTGACAAGTAA+TGG - Chr4:82072425-82072444 None:intergenic 35.0%
! AATTGGTAGCAGTAGGAAAT+AGG + Chr4:82070956-82070975 MsG0480023194.01.T01:intron 35.0%
! ATCTGTGAAAGCATGAGTTA+TGG + Chr4:82073161-82073180 MsG0480023194.01.T01:intron 35.0%
! CCTCTGATTTTATACTGCTT+AGG - Chr4:82073645-82073664 None:intergenic 35.0%
! CCTTCATGATTTTGCAGAAA+TGG - Chr4:82069218-82069237 None:intergenic 35.0%
! GGTCATTGTTAGTGTTATTC+TGG + Chr4:82071117-82071136 MsG0480023194.01.T01:intron 35.0%
! GTAACTTGCACATATATTGC+AGG + Chr4:82069804-82069823 MsG0480023194.01.T01:intron 35.0%
! GTGGATATTTAAAACACCCA+TGG - Chr4:82071650-82071669 None:intergenic 35.0%
! TATGGCTGCAATTTGAAGTA+TGG - Chr4:82074128-82074147 None:intergenic 35.0%
! TGTAGGTGTTATGTTACAGA+AGG - Chr4:82070294-82070313 None:intergenic 35.0%
! TTTCCATTGGTAATTGGTGT+AGG + Chr4:82070910-82070929 MsG0480023194.01.T01:intron 35.0%
! TTTTCCTTCCTCCATATAGA+GGG - Chr4:82072568-82072587 None:intergenic 35.0%
!! CATACCTGGTTGATAGTTTA+AGG - Chr4:82071874-82071893 None:intergenic 35.0%
!! CGAAGGTACCATTTATTAAG+TGG + Chr4:82073721-82073740 MsG0480023194.01.T01:intron 35.0%
!! GCTTTGATTTTCAACCAACT+TGG - Chr4:82073082-82073101 None:intergenic 35.0%
!! TTTTACGAGATTGTTGGTAG+TGG + Chr4:82071727-82071746 MsG0480023194.01.T01:three_prime_UTR 35.0%
!!! AACACCATAGTTTTGTATGG+AGG - Chr4:82071601-82071620 None:intergenic 35.0%
!!! ACACCATAGTTTTGTATGGA+GGG - Chr4:82071600-82071619 None:intergenic 35.0%
!!! ATGGTAGTGGTGTCTTTTTT+TGG + Chr4:82072628-82072647 MsG0480023194.01.T01:intron 35.0%
!!! CCTTGTTGAAGTTTTTTCCA+AGG + Chr4:82071552-82071571 MsG0480023194.01.T01:three_prime_UTR 35.0%
!!! TGGGGTTTTTGAGTAGTATA+TGG + Chr4:82069705-82069724 MsG0480023194.01.T01:intron 35.0%
AAAAATCATGCCACAATGCC+AGG - Chr4:82073226-82073245 None:intergenic 40.0%
AAACAATGGCAGCACTTTGA+GGG - Chr4:82070721-82070740 None:intergenic 40.0%
AAAGAAATTAGCTCGAGACG+AGG + Chr4:82071480-82071499 MsG0480023194.01.T01:three_prime_UTR 40.0%
AAGAGAAATGCCTTCTGTTC+AGG + Chr4:82069503-82069522 MsG0480023194.01.T01:CDS 40.0%
AATCCATAGACTGACTGAAG+TGG + Chr4:82073425-82073444 MsG0480023194.01.T01:intron 40.0%
ACATCAGATAAGAGATGGTC+TGG - Chr4:82073360-82073379 None:intergenic 40.0%
AGCTCTCTTCATGCAAGATA+AGG - Chr4:82071453-82071472 None:intergenic 40.0%
AGTGAGAAAGGACAGAGATA+TGG + Chr4:82070991-82071010 MsG0480023194.01.T01:intron 40.0%
ATACCTCATGAGTCGTAAGA+GGG + Chr4:82074145-82074164 MsG0480023194.01.T01:three_prime_UTR 40.0%
ATAGAGAGGAGGATTAGAGA+TGG + Chr4:82070640-82070659 MsG0480023194.01.T01:intron 40.0%
ATCTCTGTCCTTTCTCACTT+GGG - Chr4:82070990-82071009 None:intergenic 40.0%
ATGACTCTTGACCTTCTCTT+GGG + Chr4:82070216-82070235 MsG0480023194.01.T01:intron 40.0%
ATTTCTCACAGCGAAGACAA+CGG + Chr4:82068957-82068976 MsG0480023194.01.T01:intron 40.0%
CAAAGACAAATCATACCTCG+TGG - Chr4:82071669-82071688 None:intergenic 40.0%
CAATCGTCATGCTAAATGAC+AGG - Chr4:82072525-82072544 None:intergenic 40.0%
CACACCAAAGTCACAACATA+AGG + Chr4:82070492-82070511 MsG0480023194.01.T01:intron 40.0%
CACCTACACTTAGCAAAACA+AGG + Chr4:82070306-82070325 MsG0480023194.01.T01:intron 40.0%
CATAATATATGCAAGGTCCG+GGG - Chr4:82072672-82072691 None:intergenic 40.0%
CATGCTGCCTATAAATAGAG+AGG + Chr4:82070626-82070645 MsG0480023194.01.T01:intron 40.0%
CTGGCAATGTGTTCATAAGT+GGG - Chr4:82073341-82073360 None:intergenic 40.0%
CTTCTCATGGAAATTGTGCA+TGG - Chr4:82071527-82071546 None:intergenic 40.0%
GAAGATTGAGAGAAGGGAAA+GGG - Chr4:82068878-82068897 None:intergenic 40.0%
GAATTCAGCCTTTGTACCAA+AGG + Chr4:82071169-82071188 MsG0480023194.01.T01:intron 40.0%
GACTGTGGAAATGGATGATA+AGG + Chr4:82069622-82069641 MsG0480023194.01.T01:three_prime_UTR 40.0%
GAGTCAAATAGCTATAGGAC+AGG - Chr4:82072498-82072517 None:intergenic 40.0%
GCATAATATATGCAAGGTCC+GGG - Chr4:82072673-82072692 None:intergenic 40.0%
GGATGCCATAAACAGTAAAG+AGG + Chr4:82073970-82073989 MsG0480023194.01.T01:three_prime_UTR 40.0%
GTCTCACATCAGATAAGAGA+TGG - Chr4:82073365-82073384 None:intergenic 40.0%
GTCTGGACAAATTGACTACT+TGG - Chr4:82072077-82072096 None:intergenic 40.0%
GTGAATACCCTTTGGTACAA+AGG - Chr4:82071180-82071199 None:intergenic 40.0%
GTGCAAGTTACATAACCGAA+AGG - Chr4:82069795-82069814 None:intergenic 40.0%
TAGAGAGGAGGATTAGAGAT+GGG + Chr4:82070641-82070660 MsG0480023194.01.T01:intron 40.0%
TATCTCTGTCCTTTCTCACT+TGG - Chr4:82070991-82071010 None:intergenic 40.0%
TATCTTCTTCAACCGCTACT+CGG - Chr4:82068680-82068699 None:intergenic 40.0%
TATGTTACAGAAGGTTTGCC+AGG - Chr4:82070285-82070304 None:intergenic 40.0%
TCAATCGCCTGATAAAGTAC+AGG + Chr4:82070019-82070038 MsG0480023194.01.T01:three_prime_UTR 40.0%
TCTCCTACACCAATTACCAA+TGG - Chr4:82070916-82070935 None:intergenic 40.0%
TCTGGCAATGTGTTCATAAG+TGG - Chr4:82073342-82073361 None:intergenic 40.0%
TGAAGATTGAGAGAAGGGAA+AGG - Chr4:82068879-82068898 None:intergenic 40.0%
TGACAAATTACCTGGCATTG+TGG + Chr4:82073213-82073232 MsG0480023194.01.T01:intron 40.0%
TGAGGCCTCTTTACTGTTTA+TGG - Chr4:82073978-82073997 None:intergenic 40.0%
TGCTGAATGCAATGAAGCAA+GGG + Chr4:82069479-82069498 MsG0480023194.01.T01:CDS 40.0%
TGGCAATGTGTTCATAAGTG+GGG - Chr4:82073340-82073359 None:intergenic 40.0%
TGTTGAGGCTATGTTATCGA+AGG + Chr4:82073704-82073723 MsG0480023194.01.T01:three_prime_UTR 40.0%
TTATCCCTCTATATGGAGGA+AGG + Chr4:82072561-82072580 MsG0480023194.01.T01:intron 40.0%
TTCTCAATTTCTGTCTCGAC+AGG + Chr4:82069170-82069189 MsG0480023194.01.T01:CDS 40.0%
TTGCTGAATGCAATGAAGCA+AGG + Chr4:82069478-82069497 MsG0480023194.01.T01:CDS 40.0%
TTGTCCAGACCATTGTCAAA+CGG + Chr4:82072087-82072106 MsG0480023194.01.T01:three_prime_UTR 40.0%
TTTCCAAGGTATGTTGTCAC+AGG + Chr4:82071566-82071585 MsG0480023194.01.T01:three_prime_UTR 40.0%
! AACCTAATGGGCCTGATTAA+TGG - Chr4:82072795-82072814 None:intergenic 40.0%
! AATGTCAAAGCACTACAAGC+AGG + Chr4:82072446-82072465 MsG0480023194.01.T01:three_prime_UTR 40.0%
! ACCTAATGGGCCTGATTAAT+GGG - Chr4:82072794-82072813 None:intergenic 40.0%
! ATTTTGTGTGGTTACCACAG+TGG + Chr4:82070184-82070203 MsG0480023194.01.T01:intron 40.0%
! CAGAAATTGAGAAGAGCACA+AGG - Chr4:82069163-82069182 None:intergenic 40.0%
! CGTAAGAAATTGGTAGCAGT+AGG + Chr4:82070949-82070968 MsG0480023194.01.T01:intron 40.0%
! CTTGCCATTTGAGAGGAATA+GGG + Chr4:82070669-82070688 MsG0480023194.01.T01:intron 40.0%
! CTTGCTGTGTAGAGTAATCT+TGG + Chr4:82071389-82071408 MsG0480023194.01.T01:intron 40.0%
! CTTTTCCTTCCTCCATATAG+AGG - Chr4:82072569-82072588 None:intergenic 40.0%
! GAAGAGCACAAGGAAAAACT+CGG - Chr4:82069153-82069172 None:intergenic 40.0%
! TAGTTAGTAGCTGAGTTGAG+AGG + Chr4:82070585-82070604 MsG0480023194.01.T01:intron 40.0%
! TCTTGCCATTTGAGAGGAAT+AGG + Chr4:82070668-82070687 MsG0480023194.01.T01:intron 40.0%
! TGGACTGCCTTAATTTTGTG+TGG + Chr4:82070172-82070191 MsG0480023194.01.T01:intron 40.0%
! TGGGTGTTTCCATTGGTAAT+TGG + Chr4:82070904-82070923 MsG0480023194.01.T01:intron 40.0%
! TTTGTTGTGGGTGTTTCCAT+TGG + Chr4:82070897-82070916 MsG0480023194.01.T01:intron 40.0%
!! ATACAGCGAGCTTTTTGAAG+AGG + Chr4:82074039-82074058 MsG0480023194.01.T01:three_prime_UTR 40.0%
!! ATCTTCTTTTGGAAGCCTGT+TGG + Chr4:82074075-82074094 MsG0480023194.01.T01:intron 40.0%
!! CTCATGTAGATTTTGGGTCA+GGG + Chr4:82071913-82071932 MsG0480023194.01.T01:three_prime_UTR 40.0%
!! GGGTGTTTTAAATATCCACG+AGG + Chr4:82071651-82071670 MsG0480023194.01.T01:three_prime_UTR 40.0%
!! GTAAAGCTTGATAGCGTGAA+TGG - Chr4:82069039-82069058 None:intergenic 40.0%
!! TCTCATGTAGATTTTGGGTC+AGG + Chr4:82071912-82071931 MsG0480023194.01.T01:three_prime_UTR 40.0%
!!! CTCCTTGTTTTGCTAAGTGT+AGG - Chr4:82070311-82070330 None:intergenic 40.0%
!!! GTAGTGGTGTCTTTTTTTGG+TGG + Chr4:82072631-82072650 MsG0480023194.01.T01:intron 40.0%
AAAATTCACACAGGATGGGG+TGG - Chr4:82070137-82070156 None:intergenic 45.0%
AACACCGTTTGACAATGGTC+TGG - Chr4:82072094-82072113 None:intergenic 45.0%
AAGGCCCTATTCCTCTCAAA+TGG - Chr4:82070676-82070695 None:intergenic 45.0%
ACAATTCTGAGTCCGAGTAG+CGG + Chr4:82068665-82068684 MsG0480023194.01.T01:five_prime_UTR 45.0%
ACCCATTAATCAGGCCCATT+AGG + Chr4:82072790-82072809 MsG0480023194.01.T01:intron 45.0%
AGAAATGCCTTCTGTTCAGG+AGG + Chr4:82069506-82069525 MsG0480023194.01.T01:CDS 45.0%
AGACCATTGTCAAACGGTGT+TGG + Chr4:82072093-82072112 MsG0480023194.01.T01:three_prime_UTR 45.0%
AGTCCAACACCGTTTGACAA+TGG - Chr4:82072099-82072118 None:intergenic 45.0%
ATACGCCTCCCATTTGGAAA+TGG - Chr4:82073143-82073162 None:intergenic 45.0%
ATATACAACCCAAAAGGGGG+AGG - Chr4:82072034-82072053 None:intergenic 45.0%
ATGGATCCAACGTGAAGATC+AGG - Chr4:82069020-82069039 None:intergenic 45.0%
CAAACAATGGCAGCACTTTG+AGG - Chr4:82070722-82070741 None:intergenic 45.0%
CAAGGTATGTTGTCACAGGA+CGG + Chr4:82071570-82071589 MsG0480023194.01.T01:three_prime_UTR 45.0%
CAATTGAGCTTACGAGGACA+TGG + Chr4:82072704-82072723 MsG0480023194.01.T01:intron 45.0%
CACAGTCATTACCCAAGAGA+AGG - Chr4:82070230-82070249 None:intergenic 45.0%
CAGCCCTTATGTTGTGACTT+TGG - Chr4:82070499-82070518 None:intergenic 45.0%
CATACCTCATGAGTCGTAAG+AGG + Chr4:82074144-82074163 MsG0480023194.01.T01:three_prime_UTR 45.0%
CATCAGTTGAGCATACGGAA+GGG + Chr4:82073563-82073582 MsG0480023194.01.T01:intron 45.0%
CATGACTCTTGACCTTCTCT+TGG + Chr4:82070215-82070234 MsG0480023194.01.T01:intron 45.0%
CATGTCCTCGTAAGCTCAAT+TGG - Chr4:82072706-82072725 None:intergenic 45.0%
CCATACCAATTGAGCTTACG+AGG + Chr4:82072698-82072717 MsG0480023194.01.T01:intron 45.0%
CCTCGTAAGCTCAATTGGTA+TGG - Chr4:82072701-82072720 None:intergenic 45.0%
CTATCACAACCCCACAAAAC+CGG + Chr4:82073295-82073314 MsG0480023194.01.T01:intron 45.0%
CTCTTACGACTCATGAGGTA+TGG - Chr4:82074146-82074165 None:intergenic 45.0%
CTGGTACCCCATTTCCAAAT+GGG + Chr4:82073132-82073151 MsG0480023194.01.T01:intron 45.0%
CTTGCATGAAGAGAGCTTTG+AGG + Chr4:82071456-82071475 MsG0480023194.01.T01:intron 45.0%
CTTGTGCAAGCAAGTAATGC+TGG + Chr4:82073113-82073132 MsG0480023194.01.T01:intron 45.0%
GAATGATGAATCTTCCACCG+TGG + Chr4:82070835-82070854 MsG0480023194.01.T01:intron 45.0%
GAGAATCCTGATCTTCACGT+TGG + Chr4:82069011-82069030 MsG0480023194.01.T01:CDS 45.0%
GCAGTGTGTAGAACAAGGAT+TGG - Chr4:82074309-82074328 None:intergenic 45.0%
GCCTACCTCTCAATGCTAAA+AGG - Chr4:82070695-82070714 None:intergenic 45.0%
GCTGCCTATAAATAGAGAGG+AGG + Chr4:82070629-82070648 MsG0480023194.01.T01:intron 45.0%
GGAGAAAATCGAGGTAGTTG+AGG - Chr4:82068843-82068862 None:intergenic 45.0%
GGCAATGTGTTCATAAGTGG+GGG - Chr4:82073339-82073358 None:intergenic 45.0%
GTTACTCGTGGAGAAAATCG+AGG - Chr4:82068852-82068871 None:intergenic 45.0%
TAAGCTCTTTGTGGTCTCTG+TGG + Chr4:82070807-82070826 MsG0480023194.01.T01:intron 45.0%
TACGCCTCCCATTTGGAAAT+GGG - Chr4:82073142-82073161 None:intergenic 45.0%
TCATCAGTTGAGCATACGGA+AGG + Chr4:82073562-82073581 MsG0480023194.01.T01:intron 45.0%
TCCCTCATCAGTTGAGCATA+CGG + Chr4:82073558-82073577 MsG0480023194.01.T01:intron 45.0%
TCCGTATGCTCAACTGATGA+GGG - Chr4:82073562-82073581 None:intergenic 45.0%
TCTTGTCTGCAATTGACAGG+TGG + Chr4:82073949-82073968 MsG0480023194.01.T01:intron 45.0%
TTCCGTATGCTCAACTGATG+AGG - Chr4:82073563-82073582 None:intergenic 45.0%
TTTCCCTCTTACGACTCATG+AGG - Chr4:82074151-82074170 None:intergenic 45.0%
! AGCTGAGTTGAGAGGTAGTT+AGG + Chr4:82070593-82070612 MsG0480023194.01.T01:intron 45.0%
! AGGAAAAACTCGGTTCGATG+AGG - Chr4:82069143-82069162 None:intergenic 45.0%
! AGTACTGGAGAAGTCACTTG+AGG + Chr4:82073056-82073075 MsG0480023194.01.T01:three_prime_UTR 45.0%
! GGATCATCTTGCCATTTGAG+AGG + Chr4:82070662-82070681 MsG0480023194.01.T01:intron 45.0%
! GTCATGAGAGTTTTCCACTG+TGG - Chr4:82070201-82070220 None:intergenic 45.0%
! TAATGGGCCTGATTAATGGG+TGG - Chr4:82072791-82072810 None:intergenic 45.0%
!! GCCTTTTAGCATTGAGAGGT+AGG + Chr4:82070691-82070710 MsG0480023194.01.T01:intron 45.0%
!! TAGGGCCTTTTAGCATTGAG+AGG + Chr4:82070687-82070706 MsG0480023194.01.T01:intron 45.0%
!! TGTGGTTTCATGACGGATGA+AGG + Chr4:82073610-82073629 MsG0480023194.01.T01:three_prime_UTR 45.0%
!!! GTGGTGTCTTTTTTTGGTGG+TGG + Chr4:82072634-82072653 MsG0480023194.01.T01:intron 45.0%
!!! TCTTTTTTTGGTGGTGGCCA+GGG + Chr4:82072640-82072659 MsG0480023194.01.T01:intron 45.0%
!! TACTATAATATTAAAAAAAA+TGG + Chr4:82071078-82071097 MsG0480023194.01.T01:intron 5.0%
AATGCCTTCTGTTCAGGAGG+TGG + Chr4:82069509-82069528 MsG0480023194.01.T01:CDS 50.0%
ACACGGCAGTGTGTAGAACA+AGG - Chr4:82074314-82074333 None:intergenic 50.0%
ACGCCTCCCATTTGGAAATG+GGG - Chr4:82073141-82073160 None:intergenic 50.0%
AGGATTGGAGCTCACTTGAC+AGG - Chr4:82074294-82074313 None:intergenic 50.0%
CAACAAGGGCAGTCTTCTCA+TGG - Chr4:82071540-82071559 None:intergenic 50.0%
CAACATAAGGGCTGCCTGTT+AGG + Chr4:82070505-82070524 MsG0480023194.01.T01:intron 50.0%
CGTCCTGTGACAACATACCT+TGG - Chr4:82071572-82071591 None:intergenic 50.0%
GAAGGAGAGGACTGTGGAAA+TGG + Chr4:82069613-82069632 MsG0480023194.01.T01:three_prime_UTR 50.0%
GAAGTCACTTGAGGCCAAGT+TGG + Chr4:82073065-82073084 MsG0480023194.01.T01:three_prime_UTR 50.0%
GAAGTTGAAGGAGAGGACTG+TGG + Chr4:82069607-82069626 MsG0480023194.01.T01:three_prime_UTR 50.0%
GCTGGTACCCCATTTCCAAA+TGG + Chr4:82073131-82073150 MsG0480023194.01.T01:intron 50.0%
GGAGAGGTCGTTCTCTGTAA+CGG - Chr4:82068779-82068798 None:intergenic 50.0%
GGGAAAGGGATAGTTACTCG+TGG - Chr4:82068864-82068883 None:intergenic 50.0%
GGTGCATGCAATACAAGAGC+AGG + Chr4:82072467-82072486 MsG0480023194.01.T01:three_prime_UTR 50.0%
GTAATCCTCACCTCACAAGC+CGG - Chr4:82073317-82073336 None:intergenic 50.0%
GTACCCCATTTCCAAATGGG+AGG + Chr4:82073135-82073154 MsG0480023194.01.T01:intron 50.0%
GTAGAGATCCAAAACGACGC+CGG - Chr4:82068812-82068831 None:intergenic 50.0%
TAGCCAGACCCAAGTGAGAA+AGG + Chr4:82070979-82070998 MsG0480023194.01.T01:intron 50.0%
TCACAGATACGCCTCCCATT+TGG - Chr4:82073149-82073168 None:intergenic 50.0%
TGTAGGCGAATTCAACGCGT+TGG + Chr4:82069316-82069335 MsG0480023194.01.T01:CDS 50.0%
TGTCCTTTCTCACTTGGGTC+TGG - Chr4:82070985-82071004 None:intergenic 50.0%
TGTCGAACTACGAATACCCC+AGG + Chr4:82068704-82068723 MsG0480023194.01.T01:CDS 50.0%
! AACTCGGTTCGATGAGGATC+AGG - Chr4:82069137-82069156 None:intergenic 50.0%
! AACTTGGCGACGAAGAGTAC+TGG + Chr4:82073041-82073060 MsG0480023194.01.T01:three_prime_UTR 50.0%
! AATTTGCGACCTCCCCCTTT+TGG + Chr4:82072022-82072041 MsG0480023194.01.T01:three_prime_UTR 50.0%
! ATTTGCGACCTCCCCCTTTT+GGG + Chr4:82072023-82072042 MsG0480023194.01.T01:three_prime_UTR 50.0%
! GAGGACATGGTAGTGTGTCT+TGG + Chr4:82072717-82072736 MsG0480023194.01.T01:intron 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG - Chr4:82073308-82073327 None:intergenic 50.0%
!! CGGTTTTGTGGGGTTGTGAT+AGG - Chr4:82073297-82073316 None:intergenic 50.0%
!! GTGCCACTTCAGTCAGTCTA+TGG - Chr4:82073431-82073450 None:intergenic 50.0%
!!! GTCTTTTTTTGGTGGTGGCC+AGG + Chr4:82072639-82072658 MsG0480023194.01.T01:intron 50.0%
GAGGTCGTTCTCTGTAACGG+TGG - Chr4:82068776-82068795 None:intergenic 55.0%
GCTTCCACCTCCTGAACAGA+AGG - Chr4:82069516-82069535 None:intergenic 55.0%
! ATTTCTGGGCGACGAAGCCT+GGG - Chr4:82068724-82068743 None:intergenic 55.0%
!! ATCCAAAACGACGCCGGTTC+TGG - Chr4:82068806-82068825 None:intergenic 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG + Chr4:82073309-82073328 MsG0480023194.01.T01:intron 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG - Chr4:82073309-82073328 None:intergenic 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG - Chr4:82073307-82073326 None:intergenic 55.0%
!! TATTTCTGGGCGACGAAGCC+TGG - Chr4:82068725-82068744 None:intergenic 55.0%
!! TCCAAAACGACGCCGGTTCT+GGG - Chr4:82068805-82068824 None:intergenic 55.0%
AAGGTCCGGGGTTCAAACCC+TGG - Chr4:82072660-82072679 None:intergenic 60.0%
GACCTCTCCAACCCCAGAAC+CGG + Chr4:82068790-82068809 MsG0480023194.01.T01:CDS 60.0%
TTTCTGGGCGACGAAGCCTG+GGG - Chr4:82068723-82068742 None:intergenic 60.0%
!! CCAAAACGACGCCGGTTCTG+GGG - Chr4:82068804-82068823 None:intergenic 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG + Chr4:82073304-82073323 MsG0480023194.01.T01:intron 60.0%
GGTGGCCAGGGTTTGAACCC+CGG + Chr4:82072652-82072671 MsG0480023194.01.T01:intron 65.0%
! CCCCAGAACCGGCGTCGTTT+TGG + Chr4:82068801-82068820 MsG0480023194.01.T01:CDS 65.0%
!! AACGACGCCGGTTCTGGGGT+TGG - Chr4:82068800-82068819 None:intergenic 65.0%
!! CGCCGGTTCTGGGGTTGGAG+AGG - Chr4:82068795-82068814 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 82068624 82074431 82068624 ID=MsG0480023194.01;Name=MsG0480023194.01
Chr4 mRNA 82068624 82074431 82068624 ID=MsG0480023194.01.T01;Parent=MsG0480023194.01;Name=MsG0480023194.01.T01;_AED=0.49;_eAED=0.49;_QI=79|0.88|0.9|1|0.33|0.6|10|1815|194
Chr4 exon 82068624 82068866 82068624 ID=MsG0480023194.01.T01:exon:846;Parent=MsG0480023194.01.T01
Chr4 exon 82068968 82069191 82068968 ID=MsG0480023194.01.T01:exon:847;Parent=MsG0480023194.01.T01
Chr4 exon 82069312 82069379 82069312 ID=MsG0480023194.01.T01:exon:848;Parent=MsG0480023194.01.T01
Chr4 exon 82069465 82069643 82069465 ID=MsG0480023194.01.T01:exon:849;Parent=MsG0480023194.01.T01
Chr4 exon 82069951 82070040 82069951 ID=MsG0480023194.01.T01:exon:850;Parent=MsG0480023194.01.T01
Chr4 exon 82071467 82072488 82071467 ID=MsG0480023194.01.T01:exon:851;Parent=MsG0480023194.01.T01
Chr4 exon 82073569 82073725 82073569 ID=MsG0480023194.01.T01:exon:853;Parent=MsG0480023194.01.T01
Chr4 exon 82073968 82074060 82073968 ID=MsG0480023194.01.T01:exon:854;Parent=MsG0480023194.01.T01
Chr4 exon 82074143 82074431 82074143 ID=MsG0480023194.01.T01:exon:855;Parent=MsG0480023194.01.T01
Chr4 five_prime_UTR 82068624 82068702 82068624 ID=MsG0480023194.01.T01:five_prime_utr;Parent=MsG0480023194.01.T01
Chr4 CDS 82068703 82068866 82068703 ID=MsG0480023194.01.T01:cds;Parent=MsG0480023194.01.T01
Chr4 CDS 82068968 82069191 82068968 ID=MsG0480023194.01.T01:cds;Parent=MsG0480023194.01.T01
Chr4 CDS 82069312 82069379 82069312 ID=MsG0480023194.01.T01:cds;Parent=MsG0480023194.01.T01
Chr4 CDS 82069465 82069593 82069465 ID=MsG0480023194.01.T01:cds;Parent=MsG0480023194.01.T01
Chr4 three_prime_UTR 82069594 82069643 82069594 ID=MsG0480023194.01.T01:three_prime_utr;Parent=MsG0480023194.01.T01
Chr4 three_prime_UTR 82069951 82070040 82069951 ID=MsG0480023194.01.T01:three_prime_utr;Parent=MsG0480023194.01.T01
Chr4 three_prime_UTR 82071467 82072488 82071467 ID=MsG0480023194.01.T01:three_prime_utr;Parent=MsG0480023194.01.T01
Chr4 three_prime_UTR 82072992 82073105 82072992 ID=MsG0480023194.01.T01:three_prime_utr;Parent=MsG0480023194.01.T01
Chr4 three_prime_UTR 82073569 82073725 82073569 ID=MsG0480023194.01.T01:three_prime_utr;Parent=MsG0480023194.01.T01
Chr4 three_prime_UTR 82073968 82074060 82073968 ID=MsG0480023194.01.T01:three_prime_utr;Parent=MsG0480023194.01.T01
Chr4 three_prime_UTR 82074143 82074431 82074143 ID=MsG0480023194.01.T01:three_prime_utr;Parent=MsG0480023194.01.T01
Chr4 mRNA 82071457 82073324 82071457 ID=MsG0480023194.01.T02;Parent=MsG0480023194.01;Name=MsG0480023194.01.T02;_AED=0.50;_eAED=0.56;_QI=0|0.33|0.25|1|0|0.25|4|0|146
Chr4 exon 82071457 82071652 82071457 ID=MsG0480023194.01.T02:exon:856;Parent=MsG0480023194.01.T02
Chr4 exon 82072403 82072488 82072403 ID=MsG0480023194.01.T02:exon:857;Parent=MsG0480023194.01.T02
Chr4 exon 82073280 82073324 82073280 ID=MsG0480023194.01.T02:exon:858;Parent=MsG0480023194.01.T02
Chr4 CDS 82071457 82071652 82071457 ID=MsG0480023194.01.T02:cds;Parent=MsG0480023194.01.T02
Chr4 CDS 82072403 82072488 82072403 ID=MsG0480023194.01.T02:cds;Parent=MsG0480023194.01.T02
Chr4 CDS 82072992 82073105 82072992 ID=MsG0480023194.01.T02:cds;Parent=MsG0480023194.01.T02
Chr4 CDS 82073280 82073324 82073280 ID=MsG0480023194.01.T02:cds;Parent=MsG0480023194.01.T02
Gene Sequence

>MsG0480023194.01.T01

ATGTCGAACTACGAATACCCCAGGCTTCGTCGCCCAGAAATAGTTCAACTCCTAAACAACTTTCAAATTGCCACCGTTACAGAGAACGACCTCTCCAACCCCAGAACCGGCGTCGTTTTGGATCTCTACTCTCGCATCCTCAACTACCTCGATTTTCTCCACGACGAAGACAACGGACAGCTAGATTTCGATGCACTAGAGCATCTCGAGAATCCTGATCTTCACGTTGGATCCATTCACGCTATCAAGCTTTACAACAAGATCAAGGAAATGCTCAGCGCACTTGAATGTCCTAAGAAATACACATTCAACTTTGCTGATCTTCTCAAACCTGATCCTCATCGAACCGAGTTTTTCCTTGTGCTCTTCTCAATTTCTGTCTCGACAGAAATTGTAGGCGAATTCAACGCGTTGGAACAGAAGATAGTTGAGATTGAAGAGAATAAGATTACACAGTTGAAATTGGCGATTGCTGAATGCAATGAAGCAAGGGAAAGAGAAATGCCTTCTGTTCAGGAGGTGGAAGCACAAGTTAAAGAGTTGCGTCAAACTATTGCAAACCTGAACAATAAACAGATGTCATGA

>MsG0480023194.01.T02

TTGCATGAAGAGAGCTTTGAGGAAAAGAAATTAGCTCGAGACGAGGCGAGAAATGCTGAAAGATTAGCCATGCACAATTTCCATGAGAAGACTGCCCTTGTTGAAGTTTTTTCCAAGGTATGTTGTCACAGGACGGTATTCCCTCCATACAAAACTATGGTGTTTTTAGAATCTTTATTTTGTTTCAAAACCATGGATAATACAGATCACTTTATCCATTACTTGTCAGGTACACAAAAAATGTCAAAGCACTACAAGCAGGTGCATGCAATACAAGAGCAGGTCAATTCTGCTAAAACTATTGAAAAGGATCTTAAAACATTAAAAGCTAAACTTGGCGACGAAGAGTACTGGAGAAGTCACTTGAGGCCAAGTTGGTTGAAAATCAAAGCAAAGAAATTGCGGTTGGGCCTATCACAACCCCACAAAACCGGCTTGTGA

Protein sequence

>MsG0480023194.01.T01

MSNYEYPRLRRPEIVQLLNNFQIATVTENDLSNPRTGVVLDLYSRILNYLDFLHDEDNGQLDFDALEHLENPDLHVGSIHAIKLYNKIKEMLSALECPKKYTFNFADLLKPDPHRTEFFLVLFSISVSTEIVGEFNALEQKIVEIEENKITQLKLAIAECNEAREREMPSVQEVEAQVKELRQTIANLNNKQMS*

>MsG0480023194.01.T02

LHEESFEEKKLARDEARNAERLAMHNFHEKTALVEVFSKVCCHRTVFPPYKTMVFLESLFCFKTMDNTDHFIHYLSGTQKMSKHYKQVHAIQEQVNSAKTIEKDLKTLKAKLGDEEYWRSHLRPSWLKIKAKKLRLGLSQPHKTGL*