Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033431.01.T01 | XP_013443468.2 | 72.222 | 342 | 40 | 6 | 22 | 316 | 22 | 355 | 1.74E-152 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033431.01.T01 | Q1PF16 | 35.256 | 156 | 82 | 4 | 165 | 308 | 143 | 291 | 2.23E-18 | 87 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033431.01.T01 | A0A396J7S7 | 72.222 | 342 | 40 | 6 | 22 | 316 | 22 | 355 | 8.31e-153 | 441 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000292.01 | MsG0680033431.01 | 0.818932 | 1.514118e-52 | 1.149110e-49 |
| MsG0180004246.01 | MsG0680033431.01 | 0.816749 | 4.710274e-52 | 3.366135e-49 |
| MsG0180004899.01 | MsG0680033431.01 | 0.817081 | 3.966427e-52 | 2.860475e-49 |
| MsG0280010611.01 | MsG0680033431.01 | 0.811538 | 6.658924e-51 | 4.132878e-48 |
| MsG0380012844.01 | MsG0680033431.01 | 0.817199 | 3.732095e-52 | 2.700165e-49 |
| MsG0380014794.01 | MsG0680033431.01 | 0.809833 | 1.556354e-50 | 9.234082e-48 |
| MsG0680033431.01 | MsG0780036517.01 | 0.826019 | 3.412535e-54 | 3.162484e-51 |
| MsG0680033431.01 | MsG0780036593.01 | 0.802345 | 5.863848e-49 | 2.865689e-46 |
| MsG0680033431.01 | MsG0780036595.01 | 0.817904 | 2.588162e-52 | 1.909022e-49 |
| MsG0680033431.01 | MsG0780036596.01 | 0.817086 | 3.957220e-52 | 2.854164e-49 |
| MsG0680033431.01 | MsG0780037395.01 | 0.808421 | 3.123184e-50 | 1.784989e-47 |
| MsG0680033431.01 | MsG0780037808.01 | 0.807440 | 5.048601e-50 | 2.812170e-47 |
| MsG0680033431.01 | MsG0780038334.01 | 0.841221 | 5.420349e-58 | 7.910062e-55 |
| MsG0680033431.01 | MsG0780039323.01 | 0.806796 | 6.910556e-50 | 3.785472e-47 |
| MsG0680033431.01 | MsG0780039338.01 | 0.832921 | 7.174008e-56 | 8.134540e-53 |
| MsG0680033431.01 | MsG0780041074.01 | 0.857650 | 1.413020e-62 | 3.512451e-59 |
| MsG0680033431.01 | MsG0880041864.01 | 0.803080 | 4.135409e-49 | 2.058997e-46 |
| MsG0680033431.01 | MsG0880042988.01 | 0.804536 | 2.061347e-49 | 1.065474e-46 |
| MsG0680033431.01 | MsG0880043037.01 | 0.815249 | 1.018273e-51 | 6.983822e-49 |
| MsG0680033431.01 | MsG0880045668.01 | 0.844749 | 6.235648e-59 | 1.016625e-55 |
| MsG0680033431.01 | MsG0880046370.01 | 0.824878 | 6.356519e-54 | 5.702709e-51 |
| MsG0480021060.01 | MsG0680033431.01 | 0.843571 | 1.291343e-58 | 2.028937e-55 |
| MsG0480021894.01 | MsG0680033431.01 | 0.802964 | 4.370245e-49 | 2.169593e-46 |
| MsG0480023890.01 | MsG0680033431.01 | 0.807310 | 5.380101e-50 | 2.986784e-47 |
| MsG0580024045.01 | MsG0680033431.01 | 0.803504 | 3.377528e-49 | 1.700226e-46 |
| MsG0380015486.01 | MsG0680033431.01 | 0.817025 | 4.083042e-52 | 2.940176e-49 |
| MsG0580030088.01 | MsG0680033431.01 | 0.823240 | 1.540522e-53 | 1.319041e-50 |
| MsG0680030599.01 | MsG0680033431.01 | 0.831978 | 1.228578e-55 | 1.354816e-52 |
| MsG0280010300.01 | MsG0680033431.01 | 0.801900 | 7.239498e-49 | 3.498065e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033431.01.T01 | MTR_0011s0210 | 68.986 | 345 | 52 | 7 | 22 | 317 | 22 | 360 | 4.97e-151 | 428 |
| MsG0680033431.01.T01 | MTR_0011s0260 | 69.364 | 346 | 47 | 7 | 22 | 316 | 22 | 359 | 1.01e-150 | 427 |
| MsG0680033431.01.T01 | MTR_6g047570 | 57.099 | 324 | 102 | 6 | 22 | 317 | 22 | 336 | 2.98e-113 | 331 |
| MsG0680033431.01.T01 | MTR_4g067010 | 50.606 | 330 | 94 | 7 | 22 | 315 | 23 | 319 | 5.57e-95 | 285 |
| MsG0680033431.01.T01 | MTR_4g066460 | 50.746 | 335 | 98 | 7 | 22 | 317 | 23 | 329 | 2.98e-92 | 278 |
| MsG0680033431.01.T01 | MTR_4g066380 | 47.536 | 345 | 90 | 6 | 22 | 316 | 22 | 325 | 1.06e-78 | 243 |
| MsG0680033431.01.T01 | MTR_0246s0020 | 46.175 | 366 | 118 | 11 | 22 | 317 | 23 | 379 | 3.53e-75 | 236 |
| MsG0680033431.01.T01 | MTR_0250s0040 | 46.349 | 315 | 99 | 7 | 23 | 317 | 1 | 265 | 8.80e-74 | 228 |
| MsG0680033431.01.T01 | MTR_0246s0050 | 42.553 | 329 | 136 | 11 | 28 | 317 | 7 | 321 | 1.16e-68 | 217 |
| MsG0680033431.01.T01 | MTR_4g098035 | 42.553 | 329 | 136 | 11 | 28 | 317 | 28 | 342 | 2.50e-68 | 217 |
| MsG0680033431.01.T01 | MTR_0246s0020 | 43.988 | 341 | 112 | 11 | 22 | 292 | 23 | 354 | 1.45e-60 | 197 |
| MsG0680033431.01.T01 | MTR_6g047550 | 50.000 | 228 | 78 | 6 | 22 | 214 | 22 | 248 | 3.75e-56 | 183 |
| MsG0680033431.01.T01 | MTR_5g014560 | 35.922 | 309 | 158 | 13 | 22 | 316 | 25 | 307 | 2.31e-38 | 138 |
| MsG0680033431.01.T01 | MTR_5g014520 | 36.137 | 321 | 167 | 9 | 22 | 316 | 25 | 333 | 5.74e-36 | 132 |
| MsG0680033431.01.T01 | MTR_4g009540 | 37.342 | 158 | 88 | 3 | 165 | 313 | 176 | 331 | 2.64e-23 | 98.6 |
| MsG0680033431.01.T01 | MTR_2g010450 | 34.641 | 153 | 98 | 1 | 165 | 315 | 201 | 353 | 3.27e-22 | 95.9 |
| MsG0680033431.01.T01 | MTR_4g097920 | 37.931 | 145 | 85 | 3 | 165 | 307 | 164 | 305 | 1.48e-21 | 93.2 |
| MsG0680033431.01.T01 | MTR_5g014600 | 35.625 | 160 | 85 | 3 | 165 | 308 | 173 | 330 | 1.84e-21 | 93.2 |
| MsG0680033431.01.T01 | MTR_4g097920 | 37.931 | 145 | 85 | 3 | 165 | 307 | 179 | 320 | 1.98e-21 | 93.2 |
| MsG0680033431.01.T01 | MTR_5g014550 | 46.094 | 128 | 56 | 3 | 171 | 291 | 54 | 175 | 8.78e-21 | 88.6 |
| MsG0680033431.01.T01 | MTR_2g104650 | 37.162 | 148 | 88 | 3 | 165 | 308 | 118 | 264 | 1.17e-20 | 90.1 |
| MsG0680033431.01.T01 | MTR_4g097940 | 38.621 | 145 | 84 | 3 | 165 | 307 | 179 | 320 | 1.64e-20 | 90.5 |
| MsG0680033431.01.T01 | MTR_2g104550 | 34.395 | 157 | 95 | 3 | 165 | 316 | 162 | 315 | 4.55e-20 | 89.4 |
| MsG0680033431.01.T01 | MTR_4g009110 | 36.076 | 158 | 87 | 4 | 165 | 313 | 198 | 350 | 9.90e-20 | 88.6 |
| MsG0680033431.01.T01 | MTR_4g092700 | 35.862 | 145 | 92 | 1 | 165 | 308 | 182 | 326 | 2.05e-19 | 87.4 |
| MsG0680033431.01.T01 | MTR_4g097950 | 39.610 | 154 | 81 | 2 | 165 | 308 | 94 | 245 | 3.70e-19 | 85.5 |
| MsG0680033431.01.T01 | MTR_8g009020 | 32.099 | 162 | 92 | 2 | 165 | 313 | 167 | 323 | 4.53e-19 | 86.7 |
| MsG0680033431.01.T01 | MTR_7g451650 | 33.918 | 171 | 98 | 5 | 138 | 308 | 37 | 192 | 6.11e-19 | 83.6 |
| MsG0680033431.01.T01 | MTR_4g009510 | 34.722 | 144 | 80 | 4 | 168 | 308 | 68 | 200 | 1.38e-18 | 82.8 |
| MsG0680033431.01.T01 | MTR_7g050350 | 35.252 | 139 | 81 | 3 | 170 | 308 | 1 | 130 | 2.60e-18 | 80.1 |
| MsG0680033431.01.T01 | MTR_7g451650 | 35.252 | 139 | 81 | 3 | 170 | 308 | 1 | 130 | 2.60e-18 | 80.1 |
| MsG0680033431.01.T01 | MTR_4g009420 | 32.759 | 174 | 91 | 6 | 138 | 308 | 42 | 192 | 5.71e-18 | 80.9 |
| MsG0680033431.01.T01 | MTR_2g104490 | 32.867 | 143 | 95 | 1 | 165 | 307 | 161 | 302 | 2.24e-17 | 81.6 |
| MsG0680033431.01.T01 | MTR_2g104530 | 34.247 | 146 | 91 | 2 | 165 | 309 | 129 | 270 | 2.77e-17 | 80.9 |
| MsG0680033431.01.T01 | MTR_7g080780 | 35.714 | 154 | 89 | 3 | 165 | 317 | 176 | 320 | 8.93e-17 | 80.1 |
| MsG0680033431.01.T01 | MTR_7g080780 | 35.714 | 154 | 89 | 3 | 165 | 317 | 189 | 333 | 9.62e-17 | 80.1 |
| MsG0680033431.01.T01 | MTR_8g069740 | 34.351 | 131 | 81 | 3 | 165 | 291 | 136 | 265 | 3.01e-16 | 77.8 |
| MsG0680033431.01.T01 | MTR_2g104560 | 31.098 | 164 | 107 | 3 | 155 | 314 | 65 | 226 | 3.05e-16 | 77.0 |
| MsG0680033431.01.T01 | MTR_4g009540 | 35.036 | 137 | 78 | 3 | 165 | 292 | 176 | 310 | 5.85e-16 | 77.4 |
| MsG0680033431.01.T01 | MTR_5g014640 | 31.818 | 154 | 85 | 3 | 165 | 309 | 178 | 320 | 1.44e-14 | 73.6 |
| MsG0680033431.01.T01 | MTR_2g104500 | 29.412 | 221 | 129 | 8 | 109 | 313 | 63 | 272 | 3.14e-14 | 72.0 |
| MsG0680033431.01.T01 | MTR_8g009010 | 31.447 | 159 | 88 | 4 | 152 | 308 | 128 | 267 | 4.08e-13 | 69.3 |
| MsG0680033431.01.T01 | MTR_7g451650 | 32.258 | 155 | 90 | 5 | 138 | 292 | 37 | 176 | 1.94e-12 | 65.5 |
| MsG0680033431.01.T01 | MTR_2g104490 | 31.250 | 128 | 87 | 1 | 165 | 292 | 161 | 287 | 1.31e-11 | 64.7 |
| MsG0680033431.01.T01 | MTR_4g009420 | 30.968 | 155 | 87 | 5 | 138 | 292 | 42 | 176 | 3.65e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033431.01.T01 | AT2G22760 | 35.256 | 156 | 82 | 4 | 165 | 308 | 143 | 291 | 2.28e-19 | 87.0 |
| MsG0680033431.01.T01 | AT4G37850 | 33.766 | 154 | 98 | 3 | 165 | 315 | 176 | 328 | 2.33e-17 | 81.6 |
| MsG0680033431.01.T01 | AT4G37850 | 33.766 | 154 | 98 | 3 | 165 | 315 | 176 | 328 | 2.33e-17 | 81.6 |
| MsG0680033431.01.T01 | AT2G22770 | 28.340 | 247 | 111 | 9 | 116 | 308 | 81 | 315 | 1.12e-15 | 76.6 |
| MsG0680033431.01.T01 | AT2G22750 | 37.584 | 149 | 86 | 3 | 165 | 307 | 150 | 297 | 1.39e-15 | 76.3 |
| MsG0680033431.01.T01 | AT2G22750 | 37.584 | 149 | 86 | 3 | 165 | 307 | 178 | 325 | 1.64e-15 | 76.6 |
| MsG0680033431.01.T01 | AT2G22750 | 37.584 | 149 | 86 | 3 | 165 | 307 | 174 | 321 | 2.14e-15 | 76.3 |
| MsG0680033431.01.T01 | AT2G22760 | 34.532 | 139 | 73 | 3 | 165 | 292 | 143 | 274 | 2.22e-15 | 75.5 |
| MsG0680033431.01.T01 | AT2G22750 | 37.584 | 149 | 85 | 4 | 165 | 307 | 150 | 296 | 1.92e-14 | 73.2 |
| MsG0680033431.01.T01 | AT2G22750 | 37.584 | 149 | 85 | 4 | 165 | 307 | 178 | 324 | 2.49e-14 | 73.2 |
Find 44 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTAGTAGTAGGTGAATT+TGG | 0.157544 | 6:+64754512 | None:intergenic |
| CGATATTGATAAAACAATTA+TGG | 0.241298 | 6:-64754633 | MsG0680033431.01.T01:CDS |
| AACTAGTAGTAGGTGAATTT+GGG | 0.258364 | 6:+64754513 | None:intergenic |
| AGTGGTTTGCATCTTCTTAT+AGG | 0.285856 | 6:+64753112 | None:intergenic |
| CAAGTGGAAGCAAAAGTGTT+AGG | 0.299198 | 6:-64753632 | MsG0680033431.01.T01:CDS |
| TGTAGTTACTAGTTTCAAAA+AGG | 0.306369 | 6:-64754928 | MsG0680033431.01.T01:intron |
| TAAGATAATACTATGTATAT+TGG | 0.331197 | 6:-64753068 | MsG0680033431.01.T01:three_prime_UTR |
| CACCAGTATCAAGCATATTC+AGG | 0.356769 | 6:+64754780 | None:intergenic |
| TGTATCTACCCGTGCGATGC+AGG | 0.386085 | 6:-64752995 | MsG0680033431.01.T01:three_prime_UTR |
| TGCAGGGATAAATTATGTTT+AGG | 0.391523 | 6:-64752978 | MsG0680033431.01.T01:three_prime_UTR |
| GGGACTTCTAGTCAAAATTA+TGG | 0.406834 | 6:-64753570 | MsG0680033431.01.T01:CDS |
| TCATCATCGCTGCAGAAGTC+TGG | 0.439235 | 6:+64753704 | None:intergenic |
| GGTCAAATCCAGAAAATTGT+TGG | 0.450466 | 6:+64754489 | None:intergenic |
| ATTTAGTGATGAAACAAAGT+TGG | 0.458588 | 6:-64754669 | MsG0680033431.01.T01:CDS |
| AAGTGGAAGCAAAAGTGTTA+GGG | 0.462288 | 6:-64753631 | MsG0680033431.01.T01:CDS |
| TAGGGAAATACATGTTGATT+CGG | 0.467508 | 6:-64753613 | MsG0680033431.01.T01:CDS |
| TGATATTACTATCATTGCTC+AGG | 0.480526 | 6:-64753480 | MsG0680033431.01.T01:intron |
| GTCAAATCCAGAAAATTGTT+GGG | 0.480993 | 6:+64754490 | None:intergenic |
| GAGCGCAATGAAAGTGTTGT+TGG | 0.490652 | 6:-64753665 | MsG0680033431.01.T01:CDS |
| ATCGCTGCAGAAGTCTGGTT+TGG | 0.490772 | 6:+64753709 | None:intergenic |
| AATTGTTGGGAACTAGTAGT+AGG | 0.495232 | 6:+64754503 | None:intergenic |
| GTTGATTCGGATCCAATGTA+AGG | 0.498122 | 6:-64753600 | MsG0680033431.01.T01:CDS |
| GTCCCTTGTGATCCTTACAT+TGG | 0.512495 | 6:+64753588 | None:intergenic |
| AACCTGAATATGCTTGATAC+TGG | 0.514353 | 6:-64754782 | MsG0680033431.01.T01:CDS |
| GATATCATTTATCGAAAATG+AGG | 0.521059 | 6:+64753141 | None:intergenic |
| GAGCAATGATAGTAATATCA+AGG | 0.522227 | 6:+64753483 | None:intergenic |
| GGAACACAATTTATTTGCTG+AGG | 0.543803 | 6:-64754810 | MsG0680033431.01.T01:CDS |
| TAATTTATCCCTGCATCGCA+CGG | 0.551275 | 6:+64752986 | None:intergenic |
| TCAAGGATGGAATCTCCAAA+GGG | 0.562816 | 6:+64753500 | None:intergenic |
| GTATCTACCCGTGCGATGCA+GGG | 0.568334 | 6:-64752994 | MsG0680033431.01.T01:three_prime_UTR |
| ATCAAGGATGGAATCTCCAA+AGG | 0.580088 | 6:+64753499 | None:intergenic |
| AATGATAGTAATATCAAGGA+TGG | 0.583388 | 6:+64753487 | None:intergenic |
| AAATGTGTTGCTGAGAGTTG+TGG | 0.591764 | 6:+64754688 | None:intergenic |
| AATTTATCCCTGCATCGCAC+GGG | 0.600301 | 6:+64752987 | None:intergenic |
| ATTGCGCTCATCAAATGATG+AGG | 0.605739 | 6:+64753679 | None:intergenic |
| TGTTGGTTCAATATTTCAAG+TGG | 0.607961 | 6:-64753648 | MsG0680033431.01.T01:CDS |
| GGACACTATCAAATACATGA+AGG | 0.619002 | 6:-64753801 | MsG0680033431.01.T01:CDS |
| GATCCAATGTAAGGATCACA+AGG | 0.634465 | 6:-64753591 | MsG0680033431.01.T01:CDS |
| GAATATGCTTGATACTGGTG+TGG | 0.643647 | 6:-64754777 | MsG0680033431.01.T01:CDS |
| ACTAGTAGTAGGTGAATTTG+GGG | 0.663794 | 6:+64754514 | None:intergenic |
| ACTTGTGAAGAACATACGCA+AGG | 0.680827 | 6:-64753214 | MsG0680033431.01.T01:CDS |
| GTCATCATAATAACATGACA+TGG | 0.699541 | 6:-64753175 | MsG0680033431.01.T01:exon |
| ATCCAATGTAAGGATCACAA+GGG | 0.757305 | 6:-64753590 | MsG0680033431.01.T01:CDS |
| CTAGTAGTAGGTGAATTTGG+GGG | 0.786954 | 6:+64754515 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATTAATATTAAATACAA+TGG | + | Chr6:64754609-64754628 | None:intergenic | 10.0% |
| !! | ATAAAAACTAAATATTATCA+AGG | - | Chr6:64753729-64753748 | MsG0680033431.01.T01:CDS | 10.0% |
| !! | GAATATTCTTTATAAAAATA+AGG | - | Chr6:64752923-64752942 | MsG0680033431.01.T01:three_prime_UTR | 10.0% |
| !!! | AATCTTATTATTTTATAGTT+GGG | - | Chr6:64754623-64754642 | MsG0680033431.01.T01:CDS | 10.0% |
| !!! | TAATCTTATTATTTTATAGT+TGG | - | Chr6:64754622-64754641 | MsG0680033431.01.T01:CDS | 10.0% |
| !!! | TATTGTTTTAAAAAATGAAA+TGG | - | Chr6:64754947-64754966 | MsG0680033431.01.T01:CDS | 10.0% |
| !! | AATATATCAAGCAAATATAT+TGG | + | Chr6:64754547-64754566 | None:intergenic | 15.0% |
| !! | TAAGATAATACTATGTATAT+TGG | - | Chr6:64754819-64754838 | MsG0680033431.01.T01:CDS | 15.0% |
| !! | TTGTGTAAAATTATATTAGA+TGG | - | Chr6:64754044-64754063 | MsG0680033431.01.T01:intron | 15.0% |
| !!! | AAATTAAAGTATTTTATTCC+AGG | - | Chr6:64754515-64754534 | MsG0680033431.01.T01:CDS | 15.0% |
| !!! | AATTATTCTTGTTTTCAATT+CGG | + | Chr6:64753469-64753488 | None:intergenic | 15.0% |
| !!! | GTTCGATAATATATTTTTTT+TGG | + | Chr6:64753761-64753780 | None:intergenic | 15.0% |
| !!! | TTTTATCGTTTTTCTTTTTT+TGG | - | Chr6:64754862-64754881 | MsG0680033431.01.T01:intron | 15.0% |
| !! | AAGAATTTAAAAAGAAACAG+TGG | + | Chr6:64754796-64754815 | None:intergenic | 20.0% |
| !! | AATATATTATCGAACAATAG+AGG | - | Chr6:64753766-64753785 | MsG0680033431.01.T01:CDS | 20.0% |
| !! | CGATATTGATAAAACAATTA+TGG | - | Chr6:64753254-64753273 | MsG0680033431.01.T01:intron | 20.0% |
| !!! | ATTGTAGTTTATTTTGTTCT+TGG | + | Chr6:64753170-64753189 | None:intergenic | 20.0% |
| !!! | ATTTTGTTGTCTTTGAATTT+TGG | - | Chr6:64754568-64754587 | MsG0680033431.01.T01:CDS | 20.0% |
| !!! | TATGCAGTTTAAAGTTATTT+TGG | - | Chr6:64753872-64753891 | MsG0680033431.01.T01:intron | 20.0% |
| !!! | TTACTTATTGTACCTTTTTA+AGG | + | Chr6:64753614-64753633 | None:intergenic | 20.0% |
| !!! | TTCATTTTGTTTTGAGTTTA+AGG | + | Chr6:64753427-64753446 | None:intergenic | 20.0% |
| !!! | TTTTGTTGCAATTTAAAGAT+AGG | + | Chr6:64754458-64754477 | None:intergenic | 20.0% |
| ! | AATGATAGTAATATCAAGGA+TGG | + | Chr6:64754403-64754422 | None:intergenic | 25.0% |
| ! | AGAATAAAAACAGAGTCATA+TGG | - | Chr6:64754148-64754167 | MsG0680033431.01.T01:intron | 25.0% |
| ! | ATTTAGTGATGAAACAAAGT+TGG | - | Chr6:64753218-64753237 | MsG0680033431.01.T01:CDS | 25.0% |
| ! | CAAATATATTGGAAAAAACC+TGG | + | Chr6:64754536-64754555 | None:intergenic | 25.0% |
| ! | CACTTCAAAAATTAGTTGAA+AGG | - | Chr6:64753912-64753931 | MsG0680033431.01.T01:intron | 25.0% |
| ! | GATATCATTTATCGAAAATG+AGG | + | Chr6:64754749-64754768 | None:intergenic | 25.0% |
| ! | TCAACCATTTATTTGAGAAT+TGG | + | Chr6:64753008-64753027 | None:intergenic | 25.0% |
| ! | TTATTTGAGAATTGGAGAAT+AGG | + | Chr6:64753000-64753019 | None:intergenic | 25.0% |
| ! | TTCTCCAATTCTCAAATAAA+TGG | - | Chr6:64753001-64753020 | MsG0680033431.01.T01:three_prime_UTR | 25.0% |
| ! | TTGCAATTTAAAGATAGGTA+GGG | + | Chr6:64754453-64754472 | None:intergenic | 25.0% |
| !! | TGTAGTTACTAGTTTCAAAA+AGG | - | Chr6:64752959-64752978 | MsG0680033431.01.T01:three_prime_UTR | 25.0% |
| !!! | ATTATTTTATAGTTGGGTGA+AGG | - | Chr6:64754629-64754648 | MsG0680033431.01.T01:CDS | 25.0% |
| !!! | TATTGTACCTTTTTAAGGTT+GGG | + | Chr6:64753609-64753628 | None:intergenic | 25.0% |
| !!! | TTAAAATTTCCTTTTTTCCC+AGG | - | Chr6:64753047-64753066 | MsG0680033431.01.T01:three_prime_UTR | 25.0% |
| !!! | TTATTGTACCTTTTTAAGGT+TGG | + | Chr6:64753610-64753629 | None:intergenic | 25.0% |
| !!! | TTTGTTTTGAGTTTAAGGTA+GGG | + | Chr6:64753422-64753441 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTGAGTTTAAGGT+AGG | + | Chr6:64753423-64753442 | None:intergenic | 25.0% |
| AACTAGTAGTAGGTGAATTT+GGG | + | Chr6:64753377-64753396 | None:intergenic | 30.0% | |
| ACAAAAACCTCAAAAGCAAA+AGG | - | Chr6:64753491-64753510 | MsG0680033431.01.T01:CDS | 30.0% | |
| GAGCAATGATAGTAATATCA+AGG | + | Chr6:64754407-64754426 | None:intergenic | 30.0% | |
| GTCAAATCCAGAAAATTGTT+GGG | + | Chr6:64753400-64753419 | None:intergenic | 30.0% | |
| GTCATCATAATAACATGACA+TGG | - | Chr6:64754712-64754731 | MsG0680033431.01.T01:CDS | 30.0% | |
| GTTGCAATTTAAAGATAGGT+AGG | + | Chr6:64754454-64754473 | None:intergenic | 30.0% | |
| TGATATTACTATCATTGCTC+AGG | - | Chr6:64754407-64754426 | MsG0680033431.01.T01:CDS | 30.0% | |
| TGCAGGGATAAATTATGTTT+AGG | - | Chr6:64754909-64754928 | MsG0680033431.01.T01:intron | 30.0% | |
| ! | AATAGTAGTGTTTTACCCTT+TGG | - | Chr6:64754372-64754391 | MsG0680033431.01.T01:intron | 30.0% |
| ! | TAGGGAAATACATGTTGATT+CGG | - | Chr6:64754274-64754293 | MsG0680033431.01.T01:intron | 30.0% |
| !! | TGTTGGTTCAATATTTCAAG+TGG | - | Chr6:64754239-64754258 | MsG0680033431.01.T01:intron | 30.0% |
| !!! | ATTCTTGTTTTCAATTCGGT+AGG | + | Chr6:64753465-64753484 | None:intergenic | 30.0% |
| !!! | TTTCGCCACTTTTTAACTTT+TGG | - | Chr6:64754484-64754503 | MsG0680033431.01.T01:CDS | 30.0% |
| AACCTGAATATGCTTGATAC+TGG | - | Chr6:64753105-64753124 | MsG0680033431.01.T01:three_prime_UTR | 35.0% | |
| AATTGTTGGGAACTAGTAGT+AGG | + | Chr6:64753387-64753406 | None:intergenic | 35.0% | |
| ACTAGTAGTAGGTGAATTTG+GGG | + | Chr6:64753376-64753395 | None:intergenic | 35.0% | |
| AGAGCTAGTTAATAGCTATG+AGG | + | Chr6:64753648-64753667 | None:intergenic | 35.0% | |
| ATCCAATGTAAGGATCACAA+GGG | - | Chr6:64754297-64754316 | MsG0680033431.01.T01:intron | 35.0% | |
| CGACACCAAAAGTTAAAAAG+TGG | + | Chr6:64754492-64754511 | None:intergenic | 35.0% | |
| GAACTAGTAGTAGGTGAATT+TGG | + | Chr6:64753378-64753397 | None:intergenic | 35.0% | |
| GAGCTAGTTAATAGCTATGA+GGG | + | Chr6:64753647-64753666 | None:intergenic | 35.0% | |
| GGACACTATCAAATACATGA+AGG | - | Chr6:64754086-64754105 | MsG0680033431.01.T01:intron | 35.0% | |
| GGGACTTCTAGTCAAAATTA+TGG | - | Chr6:64754317-64754336 | MsG0680033431.01.T01:intron | 35.0% | |
| GGTCAAATCCAGAAAATTGT+TGG | + | Chr6:64753401-64753420 | None:intergenic | 35.0% | |
| TCTCGTGCTATAATATGTTG+AGG | - | Chr6:64753514-64753533 | MsG0680033431.01.T01:CDS | 35.0% | |
| TCTTGTTCCCAACCTTAAAA+AGG | - | Chr6:64753599-64753618 | MsG0680033431.01.T01:CDS | 35.0% | |
| ! | ACTAGTTCCCAACAATTTTC+TGG | - | Chr6:64753390-64753409 | MsG0680033431.01.T01:intron | 35.0% |
| ! | AGTGGTTTGCATCTTCTTAT+AGG | + | Chr6:64754778-64754797 | None:intergenic | 35.0% |
| ! | GGAACACAATTTATTTGCTG+AGG | - | Chr6:64753077-64753096 | MsG0680033431.01.T01:three_prime_UTR | 35.0% |
| !! | AAGTGGAAGCAAAAGTGTTA+GGG | - | Chr6:64754256-64754275 | MsG0680033431.01.T01:intron | 35.0% |
| !!! | TTTCCTTTTTTCCCAGGAAA+TGG | - | Chr6:64753053-64753072 | MsG0680033431.01.T01:three_prime_UTR | 35.0% |
| AATTGTGTTCCTCCATTTCC+TGG | + | Chr6:64753068-64753087 | None:intergenic | 40.0% | |
| ACTTGTGAAGAACATACGCA+AGG | - | Chr6:64754673-64754692 | MsG0680033431.01.T01:CDS | 40.0% | |
| ATCAAGGATGGAATCTCCAA+AGG | + | Chr6:64754391-64754410 | None:intergenic | 40.0% | |
| ATTGCGCTCATCAAATGATG+AGG | + | Chr6:64754211-64754230 | None:intergenic | 40.0% | |
| ATTGTGTTCCTCCATTTCCT+GGG | + | Chr6:64753067-64753086 | None:intergenic | 40.0% | |
| CACCAGTATCAAGCATATTC+AGG | + | Chr6:64753110-64753129 | None:intergenic | 40.0% | |
| CATATTACACTGCTCACTGA+TGG | - | Chr6:64754020-64754039 | MsG0680033431.01.T01:intron | 40.0% | |
| CTAGTAGTAGGTGAATTTGG+GGG | + | Chr6:64753375-64753394 | None:intergenic | 40.0% | |
| GAATATGCTTGATACTGGTG+TGG | - | Chr6:64753110-64753129 | MsG0680033431.01.T01:three_prime_UTR | 40.0% | |
| GAGAATTGGAGAATAGGACA+GGG | + | Chr6:64752994-64753013 | None:intergenic | 40.0% | |
| GATCCAATGTAAGGATCACA+AGG | - | Chr6:64754296-64754315 | MsG0680033431.01.T01:intron | 40.0% | |
| TAATTTATCCCTGCATCGCA+CGG | + | Chr6:64754904-64754923 | None:intergenic | 40.0% | |
| TCAAGGATGGAATCTCCAAA+GGG | + | Chr6:64754390-64754409 | None:intergenic | 40.0% | |
| TGAGAATTGGAGAATAGGAC+AGG | + | Chr6:64752995-64753014 | None:intergenic | 40.0% | |
| TGCAAGAGCAATGAAGCTTT+GGG | + | Chr6:64753577-64753596 | None:intergenic | 40.0% | |
| ! | AAATGTGTTGCTGAGAGTTG+TGG | + | Chr6:64753202-64753221 | None:intergenic | 40.0% |
| ! | GGACAAGTTTTCTGTACTAG+TGG | - | Chr6:64754065-64754084 | MsG0680033431.01.T01:intron | 40.0% |
| !! | CAAGTGGAAGCAAAAGTGTT+AGG | - | Chr6:64754255-64754274 | MsG0680033431.01.T01:intron | 40.0% |
| !! | GTTGATTCGGATCCAATGTA+AGG | - | Chr6:64754287-64754306 | MsG0680033431.01.T01:intron | 40.0% |
| !! | TGAAGGAGCTAAAAAGCGTT+TGG | - | Chr6:64754103-64754122 | MsG0680033431.01.T01:intron | 40.0% |
| AATTTATCCCTGCATCGCAC+GGG | + | Chr6:64754903-64754922 | None:intergenic | 45.0% | |
| CCTCCATTTCCTGGGAAAAA+AGG | + | Chr6:64753059-64753078 | None:intergenic | 45.0% | |
| CTGCAAGAGCAATGAAGCTT+TGG | + | Chr6:64753578-64753597 | None:intergenic | 45.0% | |
| GTCCCTTGTGATCCTTACAT+TGG | + | Chr6:64754302-64754321 | None:intergenic | 45.0% | |
| TTGGGGGACTGTCAAAAGAT+GGG | + | Chr6:64753359-64753378 | None:intergenic | 45.0% | |
| TTTGGGGGACTGTCAAAAGA+TGG | + | Chr6:64753360-64753379 | None:intergenic | 45.0% | |
| !! | CACGAGACCTTTTGCTTTTG+AGG | + | Chr6:64753501-64753520 | None:intergenic | 45.0% |
| !! | GAGCGCAATGAAAGTGTTGT+TGG | - | Chr6:64754222-64754241 | MsG0680033431.01.T01:intron | 45.0% |
| !!! | CCTTTTTTCCCAGGAAATGG+AGG | - | Chr6:64753056-64753075 | MsG0680033431.01.T01:three_prime_UTR | 45.0% |
| ATCGCTGCAGAAGTCTGGTT+TGG | + | Chr6:64754181-64754200 | None:intergenic | 50.0% | |
| TCATCATCGCTGCAGAAGTC+TGG | + | Chr6:64754186-64754205 | None:intergenic | 50.0% | |
| GTATCTACCCGTGCGATGCA+GGG | - | Chr6:64754893-64754912 | MsG0680033431.01.T01:intron | 55.0% | |
| TGTATCTACCCGTGCGATGC+AGG | - | Chr6:64754892-64754911 | MsG0680033431.01.T01:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 64752918 | 64754991 | 64752918 | ID=MsG0680033431.01;Name=MsG0680033431.01 |
| Chr6 | mRNA | 64752918 | 64754991 | 64752918 | ID=MsG0680033431.01.T01;Parent=MsG0680033431.01;Name=MsG0680033431.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0.33|0.5|0.75|1|1|4|270|317 |
| Chr6 | exon | 64754929 | 64754991 | 64754929 | ID=MsG0680033431.01.T01:exon:32865;Parent=MsG0680033431.01.T01 |
| Chr6 | exon | 64754397 | 64754840 | 64754397 | ID=MsG0680033431.01.T01:exon:32866;Parent=MsG0680033431.01.T01 |
| Chr6 | exon | 64753481 | 64753846 | 64753481 | ID=MsG0680033431.01.T01:exon:32867;Parent=MsG0680033431.01.T01 |
| Chr6 | exon | 64752918 | 64753268 | 64752918 | ID=MsG0680033431.01.T01:exon:32868;Parent=MsG0680033431.01.T01 |
| Chr6 | CDS | 64754929 | 64754991 | 64754929 | ID=MsG0680033431.01.T01:cds;Parent=MsG0680033431.01.T01 |
| Chr6 | CDS | 64754397 | 64754840 | 64754397 | ID=MsG0680033431.01.T01:cds;Parent=MsG0680033431.01.T01 |
| Chr6 | CDS | 64753481 | 64753846 | 64753481 | ID=MsG0680033431.01.T01:cds;Parent=MsG0680033431.01.T01 |
| Chr6 | CDS | 64753188 | 64753268 | 64753188 | ID=MsG0680033431.01.T01:cds;Parent=MsG0680033431.01.T01 |
| Chr6 | three_prime_UTR | 64752918 | 64753187 | 64752918 | ID=MsG0680033431.01.T01:three_prime_utr;Parent=MsG0680033431.01.T01 |
| Gene Sequence |
| Protein sequence |
