Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180004899.01.T01 | XP_013469215.1 | 98.99 | 99 | 1 | 0 | 1 | 99 | 1 | 99 | 3.85E-65 | 201 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180004899.01.T01 | O82255 | 72.449 | 98 | 27 | 0 | 1 | 98 | 1 | 98 | 2.00E-51 | 159 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180004899.01.T01 | A0A072VPA8 | 98.990 | 99 | 1 | 0 | 1 | 99 | 1 | 99 | 1.84e-65 | 201 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180000647.01 | MsG0180004899.01 | 0.801399 | 9.171076e-49 | 4.375328e-46 |
MsG0180004246.01 | MsG0180004899.01 | 0.806922 | 6.502013e-50 | 3.573237e-47 |
MsG0180004898.01 | MsG0180004899.01 | 0.902327 | 1.085842e-78 | 1.529442e-74 |
MsG0180004899.01 | MsG0280008101.01 | 0.813084 | 3.061757e-51 | 1.980154e-48 |
MsG0180004899.01 | MsG0280009960.01 | 0.808200 | 3.480911e-50 | 1.977999e-47 |
MsG0180004899.01 | MsG0280010675.01 | 0.804372 | 2.230022e-49 | 1.147855e-46 |
MsG0180004899.01 | MsG0380014794.01 | 0.802667 | 5.031687e-49 | 2.479143e-46 |
MsG0180004899.01 | MsG0380015486.01 | 0.822469 | 2.329468e-53 | 1.951514e-50 |
MsG0180004899.01 | MsG0480020574.01 | 0.802736 | 4.868952e-49 | 2.403341e-46 |
MsG0180004899.01 | MsG0480021207.01 | 0.801044 | 1.084167e-48 | 5.126726e-46 |
MsG0180004899.01 | MsG0480023890.01 | 0.815495 | 8.978387e-52 | 6.200148e-49 |
MsG0180004899.01 | MsG0580024843.01 | 0.800034 | 1.741504e-48 | 8.026090e-46 |
MsG0180004899.01 | MsG0580025226.01 | 0.800155 | 1.645653e-48 | 7.607499e-46 |
MsG0180004899.01 | MsG0580028419.01 | 0.810591 | 1.068348e-50 | 6.466123e-48 |
MsG0180004899.01 | MsG0580029396.01 | 0.801262 | 9.782499e-49 | 4.651122e-46 |
MsG0180004899.01 | MsG0680030599.01 | 0.802600 | 5.194926e-49 | 2.555268e-46 |
MsG0180004899.01 | MsG0680031996.01 | 0.801791 | 7.621838e-49 | 3.672519e-46 |
MsG0180004899.01 | MsG0680033431.01 | 0.817081 | 3.966427e-52 | 2.860475e-49 |
MsG0180004899.01 | MsG0780036509.01 | 0.813909 | 2.015646e-51 | 1.333197e-48 |
MsG0180004899.01 | MsG0780040278.01 | 0.802727 | 4.889573e-49 | 2.413004e-46 |
MsG0180004899.01 | MsG0880045624.01 | 0.800666 | 1.295100e-48 | 6.065319e-46 |
MsG0180004899.01 | MsG0880045771.01 | 0.801982 | 6.962442e-49 | 3.371023e-46 |
MsG0180004899.01 | MsG0880047770.01 | 0.806301 | 8.793104e-50 | 4.755971e-47 |
PPI
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180004899.01.T01 | MTR_1g088925 | 98.990 | 99 | 1 | 0 | 1 | 99 | 1 | 99 | 4.66e-69 | 201 |
MsG0180004899.01.T01 | MTR_1g088920 | 95.960 | 99 | 4 | 0 | 1 | 99 | 1 | 99 | 4.19e-68 | 199 |
MsG0180004899.01.T01 | MTR_7g108200 | 76.531 | 98 | 23 | 0 | 1 | 98 | 1 | 98 | 3.60e-57 | 171 |
MsG0180004899.01.T01 | MTR_2g019900 | 56.842 | 95 | 41 | 0 | 1 | 95 | 1 | 95 | 5.30e-39 | 125 |
MsG0180004899.01.T01 | MTR_1g088910 | 52.041 | 98 | 47 | 0 | 1 | 98 | 1 | 98 | 6.35e-36 | 118 |
MsG0180004899.01.T01 | MTR_2g019950 | 54.737 | 95 | 43 | 0 | 1 | 95 | 1 | 95 | 1.43e-35 | 117 |
MsG0180004899.01.T01 | MTR_7g022690 | 51.042 | 96 | 46 | 1 | 1 | 95 | 30 | 125 | 6.65e-34 | 114 |
MsG0180004899.01.T01 | MTR_7g022710 | 50.000 | 96 | 47 | 1 | 1 | 95 | 30 | 125 | 1.96e-33 | 112 |
MsG0180004899.01.T01 | MTR_7g022550 | 50.000 | 96 | 47 | 1 | 1 | 95 | 30 | 125 | 1.60e-32 | 110 |
MsG0180004899.01.T01 | MTR_4g119050 | 50.000 | 96 | 47 | 1 | 1 | 95 | 1 | 96 | 7.69e-32 | 107 |
MsG0180004899.01.T01 | MTR_4g119030 | 50.000 | 96 | 47 | 1 | 1 | 95 | 1 | 96 | 7.69e-32 | 107 |
MsG0180004899.01.T01 | MTR_4g119040 | 50.000 | 96 | 47 | 1 | 1 | 95 | 1 | 96 | 7.69e-32 | 107 |
MsG0180004899.01.T01 | MTR_7g026770 | 51.042 | 96 | 46 | 1 | 1 | 95 | 22 | 117 | 4.16e-31 | 111 |
MsG0180004899.01.T01 | MTR_7g108220 | 49.474 | 95 | 47 | 1 | 1 | 94 | 1 | 95 | 1.72e-30 | 104 |
MsG0180004899.01.T01 | MTR_7g108210 | 48.421 | 95 | 48 | 1 | 1 | 94 | 1 | 95 | 1.15e-29 | 102 |
MsG0180004899.01.T01 | MTR_7g108250 | 41.053 | 95 | 56 | 0 | 1 | 95 | 1 | 95 | 9.80e-26 | 92.4 |
MsG0180004899.01.T01 | MTR_1g088905 | 38.298 | 94 | 58 | 0 | 1 | 94 | 1 | 94 | 5.82e-25 | 90.5 |
MsG0180004899.01.T01 | MTR_1g088895 | 42.857 | 98 | 56 | 0 | 1 | 98 | 1 | 98 | 1.91e-21 | 81.6 |
MsG0180004899.01.T01 | MTR_2g048970 | 39.796 | 98 | 55 | 1 | 2 | 95 | 29 | 126 | 3.66e-21 | 81.6 |
MsG0180004899.01.T01 | MTR_7g108260 | 40.426 | 94 | 56 | 0 | 1 | 94 | 1 | 94 | 3.42e-20 | 78.2 |
MsG0180004899.01.T01 | MTR_2g090755 | 38.542 | 96 | 52 | 2 | 4 | 95 | 41 | 133 | 1.56e-19 | 77.8 |
MsG0180004899.01.T01 | MTR_2g014760 | 36.170 | 94 | 60 | 0 | 2 | 95 | 27 | 120 | 8.61e-19 | 75.5 |
MsG0180004899.01.T01 | MTR_3g077570 | 35.789 | 95 | 61 | 0 | 1 | 95 | 18 | 112 | 1.35e-16 | 69.7 |
MsG0180004899.01.T01 | MTR_4g079110 | 38.710 | 93 | 52 | 3 | 6 | 95 | 58 | 148 | 5.51e-16 | 68.9 |
MsG0180004899.01.T01 | MTR_3g077560 | 34.043 | 94 | 62 | 0 | 1 | 94 | 21 | 114 | 6.50e-16 | 68.2 |
MsG0180004899.01.T01 | MTR_7g035245 | 37.234 | 94 | 59 | 0 | 1 | 94 | 3 | 96 | 1.03e-15 | 67.0 |
MsG0180004899.01.T01 | MTR_1g015890 | 36.170 | 94 | 58 | 1 | 3 | 94 | 48 | 141 | 7.61e-14 | 63.2 |
MsG0180004899.01.T01 | MTR_1g069255 | 32.979 | 94 | 62 | 1 | 2 | 94 | 84 | 177 | 8.54e-14 | 63.9 |
MsG0180004899.01.T01 | MTR_3g104510 | 35.484 | 93 | 54 | 3 | 3 | 94 | 23 | 110 | 4.10e-13 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180004899.01.T01 | AT2G47880 | 72.449 | 98 | 27 | 0 | 1 | 98 | 1 | 98 | 2.04e-52 | 159 |
MsG0180004899.01.T01 | AT1G06830 | 73.196 | 97 | 26 | 0 | 1 | 97 | 1 | 97 | 8.44e-52 | 158 |
MsG0180004899.01.T01 | AT2G30540 | 66.327 | 98 | 33 | 0 | 1 | 98 | 1 | 98 | 2.71e-51 | 157 |
MsG0180004899.01.T01 | AT3G62960 | 70.408 | 98 | 29 | 0 | 1 | 98 | 1 | 98 | 8.49e-51 | 155 |
MsG0180004899.01.T01 | AT3G62950 | 51.042 | 96 | 46 | 1 | 1 | 95 | 1 | 96 | 2.05e-36 | 119 |
MsG0180004899.01.T01 | AT2G47870 | 54.167 | 96 | 43 | 1 | 1 | 95 | 1 | 96 | 6.62e-36 | 118 |
MsG0180004899.01.T01 | AT4G15670 | 50.526 | 95 | 47 | 0 | 1 | 95 | 1 | 95 | 3.04e-34 | 114 |
MsG0180004899.01.T01 | AT4G15680 | 51.579 | 95 | 46 | 0 | 1 | 95 | 1 | 95 | 1.06e-33 | 112 |
MsG0180004899.01.T01 | AT4G15660 | 49.485 | 97 | 49 | 0 | 1 | 97 | 1 | 97 | 1.11e-33 | 112 |
MsG0180004899.01.T01 | AT4G15700 | 51.579 | 95 | 46 | 0 | 1 | 95 | 1 | 95 | 1.21e-33 | 112 |
MsG0180004899.01.T01 | AT3G21460 | 53.684 | 95 | 44 | 0 | 1 | 95 | 1 | 95 | 1.32e-33 | 112 |
MsG0180004899.01.T01 | AT4G15690 | 50.526 | 95 | 47 | 0 | 1 | 95 | 1 | 95 | 5.35e-33 | 110 |
MsG0180004899.01.T01 | AT5G18600 | 46.316 | 95 | 51 | 0 | 1 | 95 | 1 | 95 | 8.05e-31 | 105 |
MsG0180004899.01.T01 | AT5G14070 | 42.718 | 103 | 51 | 2 | 1 | 95 | 31 | 133 | 8.83e-26 | 93.6 |
MsG0180004899.01.T01 | AT3G62930 | 41.053 | 95 | 56 | 0 | 1 | 95 | 1 | 95 | 1.57e-25 | 92.0 |
MsG0180004899.01.T01 | AT1G03020 | 43.158 | 95 | 54 | 0 | 1 | 95 | 1 | 95 | 8.45e-25 | 90.1 |
MsG0180004899.01.T01 | AT3G02000 | 42.424 | 99 | 51 | 1 | 3 | 95 | 31 | 129 | 2.42e-24 | 89.7 |
MsG0180004899.01.T01 | AT1G28480 | 36.735 | 98 | 58 | 2 | 2 | 95 | 33 | 130 | 2.38e-17 | 72.0 |
MsG0180004899.01.T01 | AT4G33040 | 39.175 | 97 | 53 | 2 | 3 | 94 | 41 | 136 | 3.13e-16 | 69.3 |
MsG0180004899.01.T01 | AT5G40370 | 35.106 | 94 | 61 | 0 | 1 | 94 | 3 | 96 | 1.06e-15 | 67.0 |
MsG0180004899.01.T01 | AT5G11930 | 41.935 | 93 | 44 | 4 | 3 | 94 | 57 | 140 | 5.29e-15 | 66.2 |
MsG0180004899.01.T01 | AT4G28730 | 31.915 | 94 | 63 | 1 | 2 | 94 | 71 | 164 | 1.23e-13 | 63.2 |
MsG0180004899.01.T01 | AT5G63030 | 37.805 | 82 | 51 | 0 | 13 | 94 | 31 | 112 | 3.67e-13 | 60.8 |
MsG0180004899.01.T01 | AT5G20500 | 29.670 | 91 | 64 | 0 | 4 | 94 | 35 | 125 | 2.84e-11 | 56.2 |
MsG0180004899.01.T01 | AT2G20270 | 31.915 | 94 | 63 | 1 | 2 | 94 | 76 | 169 | 2.85e-11 | 57.0 |
MsG0180004899.01.T01 | AT1G03850 | 34.884 | 86 | 52 | 2 | 10 | 95 | 62 | 143 | 4.68e-11 | 56.2 |
Find 37 sgRNAs with CRISPR-Local
Find 33 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGGGTACACTCCAATTTCT+TGG | 0.312373 | 1:-84156421 | None:intergenic |
TTCTCCATTTCTTTCCCATC+AGG | 0.358196 | 1:-84156467 | None:intergenic |
GGAGAAAGCTATAACAAAGT+TGG | 0.418322 | 1:+84156484 | MsG0180004899.01.T01:CDS |
AGATCCTGATGGGAAAGAAA+TGG | 0.430695 | 1:+84156463 | MsG0180004899.01.T01:CDS |
CCTGTCCCTGCAGTATTCAT+TGG | 0.431206 | 1:+84156518 | MsG0180004899.01.T01:CDS |
GTGTAGGGACATTACTTCAT+TGG | 0.438643 | 1:-84156561 | None:intergenic |
GAGAAAGCTATAACAAAGTT+GGG | 0.448427 | 1:+84156485 | MsG0180004899.01.T01:CDS |
AAATCAAAGTAAGCTAAATT+CGG | 0.449656 | 1:-84156619 | None:intergenic |
GATGAGGTTGGCTACAGAAA+AGG | 0.457049 | 1:+84156340 | MsG0180004899.01.T01:CDS |
TTGTCAATTTCATGAATCAC+AGG | 0.463222 | 1:-84156440 | None:intergenic |
CTTCCTCCAATGAATACTGC+AGG | 0.488474 | 1:-84156524 | None:intergenic |
GCATAGACAACAAGAGCTCT+TGG | 0.505172 | 1:-84156378 | None:intergenic |
TCATTGGAGGAAGGCTGGTG+GGG | 0.511910 | 1:+84156534 | MsG0180004899.01.T01:CDS |
TTCATTGGAGGAAGGCTGGT+GGG | 0.512409 | 1:+84156533 | MsG0180004899.01.T01:CDS |
ATGAGGTTGGCTACAGAAAA+GGG | 0.514459 | 1:+84156341 | MsG0180004899.01.T01:CDS |
GATGGAGAAGGTGATGAGGT+TGG | 0.515048 | 1:+84156328 | None:intergenic |
CCAATGAATACTGCAGGGAC+AGG | 0.522380 | 1:-84156518 | None:intergenic |
AGTATTCATTGGAGGAAGGC+TGG | 0.536333 | 1:+84156529 | MsG0180004899.01.T01:CDS |
GTCCCTGCAGTATTCATTGG+AGG | 0.543693 | 1:+84156521 | MsG0180004899.01.T01:CDS |
GAAATTGACAAAGATCCTGA+TGG | 0.544778 | 1:+84156452 | MsG0180004899.01.T01:CDS |
AAAGTAAGCTAAATTCGGTA+TGG | 0.551896 | 1:-84156614 | None:intergenic |
TAGGGACATTACTTCATTGG+TGG | 0.552920 | 1:-84156558 | None:intergenic |
ATTCGGTATGGCCTGAGTAG+TGG | 0.556723 | 1:-84156602 | None:intergenic |
CGAGTGAACCACTTAGGTGT+AGG | 0.564629 | 1:-84156577 | None:intergenic |
ATTCATTGGAGGAAGGCTGG+TGG | 0.573512 | 1:+84156532 | MsG0180004899.01.T01:CDS |
GTTCACTCGTTCCACTACTC+AGG | 0.574323 | 1:+84156591 | MsG0180004899.01.T01:CDS |
GAGTGAACCACTTAGGTGTA+GGG | 0.588505 | 1:-84156576 | None:intergenic |
GGCTACAGAAAAGGGTGTGG+TGG | 0.590705 | 1:+84156349 | MsG0180004899.01.T01:CDS |
TTATAATATTAAGATGGAGA+AGG | 0.591892 | 1:+84156316 | None:intergenic |
GTGGAACGAGTGAACCACTT+AGG | 0.595515 | 1:-84156583 | None:intergenic |
CTGCAGTATTCATTGGAGGA+AGG | 0.598971 | 1:+84156525 | MsG0180004899.01.T01:CDS |
GTAATGTCCCTACACCTAAG+TGG | 0.609456 | 1:+84156569 | MsG0180004899.01.T01:CDS |
AAATTGACAAAGATCCTGAT+GGG | 0.612548 | 1:+84156453 | MsG0180004899.01.T01:CDS |
TTCCTCCAATGAATACTGCA+GGG | 0.637919 | 1:-84156523 | None:intergenic |
TGTCAATTTCATGAATCACA+GGG | 0.646979 | 1:-84156439 | None:intergenic |
GTTGGCTACAGAAAAGGGTG+TGG | 0.660529 | 1:+84156346 | MsG0180004899.01.T01:CDS |
TTAAGATGGAGAAGGTGATG+AGG | 0.668317 | 1:+84156324 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACATTTTGTTCCAAGAAAT+TGG | + | Chr1:84156410-84156429 | MsG0180004899.01.T01:CDS | 25.0% |
AAATTGACAAAGATCCTGAT+GGG | + | Chr1:84156453-84156472 | MsG0180004899.01.T01:CDS | 30.0% | |
GAGAAAGCTATAACAAAGTT+GGG | + | Chr1:84156485-84156504 | MsG0180004899.01.T01:CDS | 30.0% | |
TGTCAATTTCATGAATCACA+GGG | - | Chr1:84156442-84156461 | None:intergenic | 30.0% | |
TTGTCAATTTCATGAATCAC+AGG | - | Chr1:84156443-84156462 | None:intergenic | 30.0% | |
GAAATTGACAAAGATCCTGA+TGG | + | Chr1:84156452-84156471 | MsG0180004899.01.T01:CDS | 35.0% | |
GGAGAAAGCTATAACAAAGT+TGG | + | Chr1:84156484-84156503 | MsG0180004899.01.T01:CDS | 35.0% | |
AGATCCTGATGGGAAAGAAA+TGG | + | Chr1:84156463-84156482 | MsG0180004899.01.T01:CDS | 40.0% | |
GTGTAGGGACATTACTTCAT+TGG | - | Chr1:84156564-84156583 | None:intergenic | 40.0% | |
TAGGGACATTACTTCATTGG+TGG | - | Chr1:84156561-84156580 | None:intergenic | 40.0% | |
TTCCTCCAATGAATACTGCA+GGG | - | Chr1:84156526-84156545 | None:intergenic | 40.0% | |
TTCTCCATTTCTTTCCCATC+AGG | - | Chr1:84156470-84156489 | None:intergenic | 40.0% | |
! | ATGAGGTTGGCTACAGAAAA+GGG | + | Chr1:84156341-84156360 | MsG0180004899.01.T01:CDS | 40.0% |
AGTATTCATTGGAGGAAGGC+TGG | + | Chr1:84156529-84156548 | MsG0180004899.01.T01:CDS | 45.0% | |
CAGGGTACACTCCAATTTCT+TGG | - | Chr1:84156424-84156443 | None:intergenic | 45.0% | |
CTGCAGTATTCATTGGAGGA+AGG | + | Chr1:84156525-84156544 | MsG0180004899.01.T01:CDS | 45.0% | |
CTTCCTCCAATGAATACTGC+AGG | - | Chr1:84156527-84156546 | None:intergenic | 45.0% | |
GAGTGAACCACTTAGGTGTA+GGG | - | Chr1:84156579-84156598 | None:intergenic | 45.0% | |
GCATAGACAACAAGAGCTCT+TGG | - | Chr1:84156381-84156400 | None:intergenic | 45.0% | |
GTAATGTCCCTACACCTAAG+TGG | + | Chr1:84156569-84156588 | MsG0180004899.01.T01:CDS | 45.0% | |
! | GATGAGGTTGGCTACAGAAA+AGG | + | Chr1:84156340-84156359 | MsG0180004899.01.T01:CDS | 45.0% |
ATTCATTGGAGGAAGGCTGG+TGG | + | Chr1:84156532-84156551 | MsG0180004899.01.T01:CDS | 50.0% | |
ATTCGGTATGGCCTGAGTAG+TGG | - | Chr1:84156605-84156624 | None:intergenic | 50.0% | |
CCAATGAATACTGCAGGGAC+AGG | - | Chr1:84156521-84156540 | None:intergenic | 50.0% | |
CCTGTCCCTGCAGTATTCAT+TGG | + | Chr1:84156518-84156537 | MsG0180004899.01.T01:CDS | 50.0% | |
CGAGTGAACCACTTAGGTGT+AGG | - | Chr1:84156580-84156599 | None:intergenic | 50.0% | |
GTCCCTGCAGTATTCATTGG+AGG | + | Chr1:84156521-84156540 | MsG0180004899.01.T01:CDS | 50.0% | |
GTGGAACGAGTGAACCACTT+AGG | - | Chr1:84156586-84156605 | None:intergenic | 50.0% | |
GTTCACTCGTTCCACTACTC+AGG | + | Chr1:84156591-84156610 | MsG0180004899.01.T01:CDS | 50.0% | |
GTTGGCTACAGAAAAGGGTG+TGG | + | Chr1:84156346-84156365 | MsG0180004899.01.T01:CDS | 50.0% | |
TTCATTGGAGGAAGGCTGGT+GGG | + | Chr1:84156533-84156552 | MsG0180004899.01.T01:CDS | 50.0% | |
TCATTGGAGGAAGGCTGGTG+GGG | + | Chr1:84156534-84156553 | MsG0180004899.01.T01:CDS | 55.0% | |
! | GGCTACAGAAAAGGGTGTGG+TGG | + | Chr1:84156349-84156368 | MsG0180004899.01.T01:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 84156329 | 84156628 | 84156329 | ID=MsG0180004899.01;Name=MsG0180004899.01 |
Chr1 | mRNA | 84156329 | 84156628 | 84156329 | ID=MsG0180004899.01.T01;Parent=MsG0180004899.01;Name=MsG0180004899.01.T01;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|1|1|0|99 |
Chr1 | exon | 84156329 | 84156628 | 84156329 | ID=MsG0180004899.01.T01:exon:9160;Parent=MsG0180004899.01.T01 |
Chr1 | CDS | 84156329 | 84156628 | 84156329 | ID=MsG0180004899.01.T01:cds;Parent=MsG0180004899.01.T01 |
Gene Sequence |
Protein sequence |