AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003885.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003885.01.T01 MTR_1g070375 97.429 350 9 0 1 350 126 475 0.0 704
MsG0180003885.01.T01 MTR_1g070375 97.429 350 9 0 1 350 1 350 0.0 703
MsG0180003885.01.T01 MTR_2g098950 26.190 294 193 8 1 285 51 329 2.14e-14 73.6
MsG0180003885.01.T01 MTR_7g075860 24.342 304 185 10 1 284 78 356 4.64e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003885.01.T01 AT1G06730 60.694 346 128 3 1 341 137 479 2.04e-150 433
MsG0180003885.01.T01 AT5G51830 25.333 300 192 8 1 286 60 341 1.97e-12 67.8
MsG0180003885.01.T01 AT5G51830 25.333 300 192 8 1 286 60 341 1.97e-12 67.8
MsG0180003885.01.T01 AT2G31390 26.408 284 173 8 1 269 46 308 6.69e-12 66.2
MsG0180003885.01.T01 AT3G59480 25.597 293 194 7 1 284 47 324 3.28e-11 63.9

Find 97 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATCTGCCTCACCCTTTA+TGG 0.130900 1:-69680008 None:intergenic
TCCATGAAGATCGTGAATTT+TGG 0.141116 1:+69679583 MsG0180003885.01.T01:CDS
GGCACATTCTCCACTGTCTT+TGG 0.239368 1:-69679744 None:intergenic
GCAAGGATCCTGCATTTAAT+TGG 0.252553 1:+69677559 MsG0180003885.01.T01:CDS
TCTGGATTCTCTCAACCTTT+TGG 0.260480 1:+69679815 MsG0180003885.01.T01:three_prime_UTR
ATGAATTTCAATATTTGAAT+AGG 0.271715 1:+69680139 MsG0180003885.01.T01:three_prime_UTR
GAGGCAGATTCCATTTCTTT+TGG 0.276788 1:+69680019 MsG0180003885.01.T01:three_prime_UTR
AATAGCTAACTTTGCTTCTC+TGG 0.308830 1:-69677595 None:intergenic
TGAATTTCAATATTTGAATA+GGG 0.322176 1:+69680140 MsG0180003885.01.T01:three_prime_UTR
AGCGTGTGCACCTGCATTTA+AGG 0.324315 1:+69678873 MsG0180003885.01.T01:CDS
CACATCAATCTTCTTTGATC+CGG 0.345007 1:+69677713 MsG0180003885.01.T01:CDS
GATGATACTGTCAGCAGTTC+TGG 0.355643 1:+69677367 MsG0180003885.01.T01:CDS
TTTGTAGCTGCTATTGCATA+TGG 0.383282 1:+69679423 MsG0180003885.01.T01:CDS
TCCAAAATTCACGATCTTCA+TGG 0.387406 1:-69679584 None:intergenic
CTTGTGAACTAACCCTTCTC+TGG 0.389639 1:+69679797 MsG0180003885.01.T01:three_prime_UTR
GTCTTTGGAAACTCAAGCTT+GGG 0.400311 1:-69679729 None:intergenic
GAATCTGCCTCACCCTTTAT+GGG 0.401912 1:-69680007 None:intergenic
CGTCACTCATCCTCAGAAAC+TGG 0.405365 1:-69677791 None:intergenic
CATGTTGGTAATGAAATCTA+TGG 0.407871 1:+69677283 MsG0180003885.01.T01:CDS
AACTCTTGCCCAGCTAATAT+CGG 0.409872 1:-69678769 None:intergenic
GGATTTGATGATTTCTCTCC+TGG 0.416073 1:+69677651 MsG0180003885.01.T01:CDS
TCAGAGGCAACCTTGTCAAA+TGG 0.421078 1:-69679699 None:intergenic
ATTATGATTATGATACTTCA+TGG 0.421920 1:+69680171 MsG0180003885.01.T01:three_prime_UTR
CTTATGAAACACTTCTATGC+TGG 0.427598 1:+69677395 MsG0180003885.01.T01:CDS
ACAGCCATGGGCTGTGGTGC+CGG 0.437629 1:+69679507 MsG0180003885.01.T01:CDS
TGATTATGATACTTCATGGT+TGG 0.440881 1:+69680175 MsG0180003885.01.T01:three_prime_UTR
CGTGGAAAGAGCCTCTCCTC+TGG 0.440947 1:+69677741 MsG0180003885.01.T01:CDS
ATGCAGGCTGAGTCATTAAC+TGG 0.444307 1:+69678736 MsG0180003885.01.T01:intron
CGGTAGGAATGTAGCATCTC+TGG 0.451783 1:+69679527 MsG0180003885.01.T01:CDS
CAGAGGCAACCTTGTCAAAT+GGG 0.455291 1:-69679698 None:intergenic
TTTGATAGTTAATTGATGGC+AGG 0.457701 1:+69680102 MsG0180003885.01.T01:three_prime_UTR
GCATAGAAGTGTTTCATAAG+AGG 0.457998 1:-69677392 None:intergenic
GGACTTAACTGTGTATCAAT+TGG 0.460566 1:+69677259 MsG0180003885.01.T01:CDS
TGAACATTGTTGACAGTGTT+GGG 0.468406 1:+69679388 MsG0180003885.01.T01:CDS
AGTAGGTGCGGCAACAGCCA+TGG 0.475177 1:+69679494 MsG0180003885.01.T01:CDS
AGGCTCTTTCCACGTGGTCC+CGG 0.476064 1:-69677732 None:intergenic
ATAGGAGATCCGATATTAGC+TGG 0.479806 1:+69678760 MsG0180003885.01.T01:CDS
TGTCTTTGGAAACTCAAGCT+TGG 0.484443 1:-69679730 None:intergenic
GCGGCAACAGCCATGGGCTG+TGG 0.488054 1:+69679501 MsG0180003885.01.T01:CDS
TTATGAAACACTTCTATGCT+GGG 0.490537 1:+69677396 MsG0180003885.01.T01:CDS
GAATGTAGCATCTCTGGAAA+AGG 0.490628 1:+69679533 MsG0180003885.01.T01:CDS
TCCTAGCCTTGCAGCTGCTA+TGG 0.495253 1:-69677239 None:intergenic
ACATCAATCTTCTTTGATCC+GGG 0.496885 1:+69677714 MsG0180003885.01.T01:CDS
CAAAACCCATGTCTCTGTAA+AGG 0.506743 1:-69677430 None:intergenic
TAATTGATGGCAGGGAAAAG+TGG 0.509700 1:+69680111 MsG0180003885.01.T01:three_prime_UTR
TTGCTCAGCCAATTAAATGC+AGG 0.510676 1:-69677567 None:intergenic
TGAAAAGAAAGTGATAGATC+AGG 0.511007 1:+69679617 MsG0180003885.01.T01:CDS
AAGTATATTCTTTGATGTCA+AGG 0.511110 1:+69679973 MsG0180003885.01.T01:three_prime_UTR
TTGATAGTTAATTGATGGCA+GGG 0.515900 1:+69680103 MsG0180003885.01.T01:three_prime_UTR
AGTATATTCTTTGATGTCAA+GGG 0.517074 1:+69679974 MsG0180003885.01.T01:three_prime_UTR
AATGCTAATGTATTAACCAT+TGG 0.518610 1:-69679462 None:intergenic
GATGAGGGCATTAGCATGGT+TGG 0.522641 1:+69677331 MsG0180003885.01.T01:CDS
CAACTTTGTCCCATTTGACA+AGG 0.527209 1:+69679689 MsG0180003885.01.T01:CDS
GTGAACATTGTTGACAGTGT+TGG 0.528046 1:+69679387 MsG0180003885.01.T01:CDS
TAGAGGATGAAGGAGCCAAA+AGG 0.529520 1:-69679830 None:intergenic
GGGCAAGAGTTGCTTAAAAG+AGG 0.533231 1:+69678781 MsG0180003885.01.T01:CDS
TGTGTATCAATTGGTCATGT+TGG 0.537868 1:+69677268 MsG0180003885.01.T01:CDS
ATGAGGGCATTAGCATGGTT+GGG 0.538624 1:+69677332 MsG0180003885.01.T01:CDS
GTAGGTGCGGCAACAGCCAT+GGG 0.545610 1:+69679495 MsG0180003885.01.T01:CDS
GTCAGATGTGCTTCGTGATG+AGG 0.552362 1:+69677315 MsG0180003885.01.T01:CDS
GTGGAAAGAGCCTCTCCTCT+GGG 0.556111 1:+69677742 MsG0180003885.01.T01:CDS
GTTCTTGAGTCCCAGAGGAG+AGG 0.557886 1:-69677752 None:intergenic
CAGCTGTCAAAATATCAAGT+TGG 0.558330 1:-69679765 None:intergenic
ATTGTTGACAGTGTTGGGTG+TGG 0.561805 1:+69679393 MsG0180003885.01.T01:CDS
CCATGGGCTGTGGTGCCGGT+AGG 0.567182 1:+69679511 MsG0180003885.01.T01:CDS
TGAGAAGTTACCTTAAATGC+AGG 0.567864 1:-69678883 None:intergenic
CAGAGATGCTACATTCCTAC+CGG 0.568773 1:-69679526 None:intergenic
TTAGCATTTGCAAATGCAGT+AGG 0.570503 1:+69679477 MsG0180003885.01.T01:CDS
TCAGATGTGCTTCGTGATGA+GGG 0.574196 1:+69677316 MsG0180003885.01.T01:CDS
TGGTTTACTACTCTCAGTAG+TGG 0.581346 1:+69677671 MsG0180003885.01.T01:CDS
ATATGGCCATAGCAGCTGCA+AGG 0.584508 1:+69677233 None:intergenic
GCCATAGCAGCTGCAAGGCT+AGG 0.584719 1:+69677238 MsG0180003885.01.T01:CDS
GGTTGAGAGAATCCAGAGAA+GGG 0.585048 1:-69679809 None:intergenic
GTTGATCCTTTACAGAGACA+TGG 0.587141 1:+69677424 MsG0180003885.01.T01:CDS
CCTACCGGCACCACAGCCCA+TGG 0.589066 1:-69679511 None:intergenic
GTGGACTGTGCTGTTGAAGT+TGG 0.589939 1:+69677690 MsG0180003885.01.T01:CDS
GGCAAGAGTTGCTTAAAAGA+GGG 0.592747 1:+69678782 MsG0180003885.01.T01:CDS
ATGTTGGTAATGAAATCTAT+GGG 0.593558 1:+69677284 MsG0180003885.01.T01:CDS
AGGTTGAGAGAATCCAGAGA+AGG 0.595007 1:-69679810 None:intergenic
TTACAATCACCCACTTTGTG+CGG 0.595623 1:-69678807 None:intergenic
TTCTTTGATCCGGGACCACG+TGG 0.595825 1:+69677723 MsG0180003885.01.T01:CDS
AAGAGGGATCCGCACAAAGT+GGG 0.597510 1:+69678798 MsG0180003885.01.T01:CDS
TTGATCCTTTACAGAGACAT+GGG 0.597570 1:+69677425 MsG0180003885.01.T01:CDS
GAGCTCTTAACCAGTTTCTG+AGG 0.600769 1:+69677781 MsG0180003885.01.T01:CDS
GAAGGGTTAGTTCACAAGAG+TGG 0.602989 1:-69679792 None:intergenic
GCTGAGTCATTAACTGGCAT+AGG 0.613196 1:+69678742 MsG0180003885.01.T01:CDS
TAGGAGATCCGATATTAGCT+GGG 0.616829 1:+69678761 MsG0180003885.01.T01:CDS
TCGTGATGAGGGCATTAGCA+TGG 0.620050 1:+69677327 MsG0180003885.01.T01:CDS
CTGTTGTTCTTGAGTCCCAG+AGG 0.629490 1:-69677757 None:intergenic
AAAGAGGGATCCGCACAAAG+TGG 0.631344 1:+69678797 MsG0180003885.01.T01:CDS
GCTTGAGTTTCCAAAGACAG+TGG 0.639689 1:+69679734 MsG0180003885.01.T01:CDS
ATTTGCAAATGCAGTAGGTG+CGG 0.643035 1:+69679482 MsG0180003885.01.T01:CDS
TCTGCCTCACCCTTTATGGG+AGG 0.671021 1:-69680004 None:intergenic
TCTTCTTCTAACATCTGACG+AGG 0.678328 1:+69677815 MsG0180003885.01.T01:CDS
AAGCTTGGGCAAGAGCTCAG+AGG 0.678959 1:-69679715 None:intergenic
ACTACTGAGAGTAGTAAACC+AGG 0.679000 1:-69677669 None:intergenic
GAGGAGAGGCTCTTTCCACG+TGG 0.712337 1:-69677738 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAAATATTTCAGT+AGG - Chr1:69679157-69679176 None:intergenic 10.0%
!! CTATAATAAACAAAAAAAAA+AGG - Chr1:69677499-69677518 None:intergenic 10.0%
!! TTACTTAATCTTAAAATAAA+TGG + Chr1:69678558-69678577 MsG0180003885.01.T01:intron 10.0%
!! TTATATATATTCTGTTTATA+AGG + Chr1:69678098-69678117 MsG0180003885.01.T01:intron 10.0%
!!! ACTTTATATTTAAAACATAA+TGG + Chr1:69679105-69679124 MsG0180003885.01.T01:intron 10.0%
!! ATAAATATAGAAGTGATTAA+TGG - Chr1:69678653-69678672 None:intergenic 15.0%
!! ATGAATTTCAATATTTGAAT+AGG + Chr1:69680139-69680158 MsG0180003885.01.T01:three_prime_UTR 15.0%
!! TAAATATAGAAGTGATTAAT+GGG - Chr1:69678652-69678671 None:intergenic 15.0%
!! TGAATTTCAATATTTGAATA+GGG + Chr1:69680140-69680159 MsG0180003885.01.T01:three_prime_UTR 15.0%
!!! AAACTACAAATAACTTTTAA+AGG - Chr1:69678286-69678305 None:intergenic 15.0%
!!! ATAATTTGTCTAAAGATTAT+TGG + Chr1:69678434-69678453 MsG0180003885.01.T01:intron 15.0%
!!! ATATTTTGATAGTTAATTGA+TGG + Chr1:69680098-69680117 MsG0180003885.01.T01:three_prime_UTR 15.0%
!!! CTTCTATATTTATAATTTGT+AGG + Chr1:69678660-69678679 MsG0180003885.01.T01:intron 15.0%
!!! TTTTTAAGTTCTTTTTTCTT+TGG + Chr1:69677938-69677957 MsG0180003885.01.T01:intron 15.0%
!! ATTATGATTATGATACTTCA+TGG + Chr1:69680171-69680190 MsG0180003885.01.T01:three_prime_UTR 20.0%
!! GATTTATAAATTATGTCATC+AGG + Chr1:69679365-69679384 MsG0180003885.01.T01:intron 20.0%
!! GTTAGCTATTAAAAATTCAA+AGG + Chr1:69677608-69677627 MsG0180003885.01.T01:CDS 20.0%
!! TTAAAATAAATGGTATGAAG+TGG + Chr1:69678568-69678587 MsG0180003885.01.T01:intron 20.0%
!! TTAAAATGAAATTCCAGTTT+AGG + Chr1:69679045-69679064 MsG0180003885.01.T01:intron 20.0%
!!! TTGATAATTCCTTTGATATT+AGG - Chr1:69679205-69679224 None:intergenic 20.0%
!!! TTTTAAATATAAAGTGTCTG+TGG - Chr1:69679100-69679119 None:intergenic 20.0%
!!! TTTTATACATAATTTGCCAA+TGG + Chr1:69679446-69679465 MsG0180003885.01.T01:CDS 20.0%
!!! TTTTTCTGTTGCAAAATTTA+TGG + Chr1:69679286-69679305 MsG0180003885.01.T01:intron 20.0%
! AAAAAGTGACAAGTTATACT+TGG - Chr1:69679246-69679265 None:intergenic 25.0%
! AAAAATGAAGCCAAAAGAAA+TGG - Chr1:69680032-69680051 None:intergenic 25.0%
! AAATTTCAATACACTTCACT+TGG + Chr1:69678309-69678328 MsG0180003885.01.T01:intron 25.0%
! AAGTACCATAGTATATAACT+TGG - Chr1:69678197-69678216 None:intergenic 25.0%
! AAGTATATTCTTTGATGTCA+AGG + Chr1:69679973-69679992 MsG0180003885.01.T01:three_prime_UTR 25.0%
! AATATAAAGTCCTTAGCATT+AGG - Chr1:69678079-69678098 None:intergenic 25.0%
! AATGCTAATGTATTAACCAT+TGG - Chr1:69679465-69679484 None:intergenic 25.0%
! AATTTCAATACACTTCACTT+GGG + Chr1:69678310-69678329 MsG0180003885.01.T01:intron 25.0%
! AGTATATTCTTTGATGTCAA+GGG + Chr1:69679974-69679993 MsG0180003885.01.T01:three_prime_UTR 25.0%
! ATTGTAAAAATGGGTCTTAA+GGG + Chr1:69678823-69678842 MsG0180003885.01.T01:CDS 25.0%
! GAGTTGTCACAAAAATTTAA+TGG - Chr1:69679327-69679346 None:intergenic 25.0%
! TAAGATTAAGTAACAAGAGT+GGG - Chr1:69678551-69678570 None:intergenic 25.0%
! TTAAGATTAAGTAACAAGAG+TGG - Chr1:69678552-69678571 None:intergenic 25.0%
! TTTCTCCAAGTTATATACTA+TGG + Chr1:69678189-69678208 MsG0180003885.01.T01:intron 25.0%
!!! ATGTTGGTAATGAAATCTAT+GGG + Chr1:69677284-69677303 MsG0180003885.01.T01:CDS 25.0%
!!! CTGTCAAATATTTTGATGAA+TGG + Chr1:69679651-69679670 MsG0180003885.01.T01:CDS 25.0%
!!! GTTTTGTTTTGTAATGGATA+TGG + Chr1:69677630-69677649 MsG0180003885.01.T01:CDS 25.0%
!!! TCAAAGGTTTTGTTTTGTAA+TGG + Chr1:69677624-69677643 MsG0180003885.01.T01:CDS 25.0%
AAAGTGGGTGATTGTAAAAA+TGG + Chr1:69678813-69678832 MsG0180003885.01.T01:CDS 30.0%
AACAATTGGAACAGTAGAAA+AGG + Chr1:69678362-69678381 MsG0180003885.01.T01:intron 30.0%
AACACTGTATAAGGTTAAGA+AGG - Chr1:69678124-69678143 None:intergenic 30.0%
AAGATGAAGACAGATTAACA+TGG - Chr1:69678051-69678070 None:intergenic 30.0%
AAGCAATCACAGTTCTATTA+AGG - Chr1:69677874-69677893 None:intergenic 30.0%
AAGTGGGTGATTGTAAAAAT+GGG + Chr1:69678814-69678833 MsG0180003885.01.T01:CDS 30.0%
AATAGTAGAGGACAAATAGT+AGG - Chr1:69677905-69677924 None:intergenic 30.0%
AGGTTCCAAATCATGTTTAT+TGG - Chr1:69678266-69678285 None:intergenic 30.0%
AGTGTGAATTGTGAGTTTAA+GGG + Chr1:69678457-69678476 MsG0180003885.01.T01:intron 30.0%
ATCTTCATATCCTAATGCTA+AGG + Chr1:69678066-69678085 MsG0180003885.01.T01:intron 30.0%
ATTCCTTTGATATTAGGATG+TGG - Chr1:69679199-69679218 None:intergenic 30.0%
CCATAATTGCAAATAATCGA+TGG - Chr1:69678931-69678950 None:intergenic 30.0%
CTATGGTACTTGCATATTTA+TGG + Chr1:69678206-69678225 MsG0180003885.01.T01:intron 30.0%
CTCAAATCATGTGAAACAAT+TGG + Chr1:69678348-69678367 MsG0180003885.01.T01:intron 30.0%
GATTGTAAAAATGGGTCTTA+AGG + Chr1:69678822-69678841 MsG0180003885.01.T01:CDS 30.0%
GGAGAATCTTTAAACTGATT+TGG + Chr1:69678383-69678402 MsG0180003885.01.T01:intron 30.0%
GGTTCCAAATCATGTTTATT+GGG - Chr1:69678265-69678284 None:intergenic 30.0%
GTAAAAATGATTCACTGTCA+TGG + Chr1:69677456-69677475 MsG0180003885.01.T01:intron 30.0%
GTTCCAAATCATGTTTATTG+GGG - Chr1:69678264-69678283 None:intergenic 30.0%
TGAAAAGAAAGTGATAGATC+AGG + Chr1:69679617-69679636 MsG0180003885.01.T01:CDS 30.0%
TGATTATGATACTTCATGGT+TGG + Chr1:69680175-69680194 MsG0180003885.01.T01:three_prime_UTR 30.0%
TTATGAAACACTTCTATGCT+GGG + Chr1:69677396-69677415 MsG0180003885.01.T01:CDS 30.0%
TTCATTAATCTGACCTAAAC+TGG - Chr1:69679061-69679080 None:intergenic 30.0%
TTTCCACATCCTAATATCAA+AGG + Chr1:69679193-69679212 MsG0180003885.01.T01:intron 30.0%
TTTCCCCAATAAACATGATT+TGG + Chr1:69678258-69678277 MsG0180003885.01.T01:intron 30.0%
! CCATCGATTATTTGCAATTA+TGG + Chr1:69678928-69678947 MsG0180003885.01.T01:intron 30.0%
! TTGATAGTTAATTGATGGCA+GGG + Chr1:69680103-69680122 MsG0180003885.01.T01:three_prime_UTR 30.0%
! TTTGATAGTTAATTGATGGC+AGG + Chr1:69680102-69680121 MsG0180003885.01.T01:three_prime_UTR 30.0%
!! CACTTTCTTTTCAAGAATGT+CGG - Chr1:69679610-69679629 None:intergenic 30.0%
!! CATGTTGGTAATGAAATCTA+TGG + Chr1:69677283-69677302 MsG0180003885.01.T01:CDS 30.0%
!! GCTTACTTTTAGACTTTTAG+AGG - Chr1:69679850-69679869 None:intergenic 30.0%
!! TTTAGACTTTTAGAGGATGA+AGG - Chr1:69679843-69679862 None:intergenic 30.0%
!!! GATGTTTTTTATTTGCATGC+AGG + Chr1:69678720-69678739 MsG0180003885.01.T01:intron 30.0%
!!! TTGTTTTGAGCAAGTATATG+AGG + Chr1:69679904-69679923 MsG0180003885.01.T01:three_prime_UTR 30.0%
AAAATGATTCACTGTCATGG+TGG + Chr1:69677459-69677478 MsG0180003885.01.T01:intron 35.0%
AATAGCTAACTTTGCTTCTC+TGG - Chr1:69677598-69677617 None:intergenic 35.0%
ACATCAATCTTCTTTGATCC+GGG + Chr1:69677714-69677733 MsG0180003885.01.T01:CDS 35.0%
ACTCTTGAGTGCAAACTAAT+TGG + Chr1:69679343-69679362 MsG0180003885.01.T01:intron 35.0%
CACATCAATCTTCTTTGATC+CGG + Chr1:69677713-69677732 MsG0180003885.01.T01:CDS 35.0%
CAGCATATCACAAATAGTAG+AGG - Chr1:69677917-69677936 None:intergenic 35.0%
CAGCTGTCAAAATATCAAGT+TGG - Chr1:69679768-69679787 None:intergenic 35.0%
CTCTACTATTTGTGATATGC+TGG + Chr1:69677915-69677934 MsG0180003885.01.T01:intron 35.0%
CTTATGAAACACTTCTATGC+TGG + Chr1:69677395-69677414 MsG0180003885.01.T01:CDS 35.0%
GAGTGTGAATTGTGAGTTTA+AGG + Chr1:69678456-69678475 MsG0180003885.01.T01:intron 35.0%
GGACTTAACTGTGTATCAAT+TGG + Chr1:69677259-69677278 MsG0180003885.01.T01:CDS 35.0%
GGTATGAAGTGGCAAAATAA+GGG + Chr1:69678579-69678598 MsG0180003885.01.T01:intron 35.0%
GTGTGAATTGTGAGTTTAAG+GGG + Chr1:69678458-69678477 MsG0180003885.01.T01:intron 35.0%
GTTGGACACATGTGTAAAAA+TGG - Chr1:69678502-69678521 None:intergenic 35.0%
TCCAAAATTCACGATCTTCA+TGG - Chr1:69679587-69679606 None:intergenic 35.0%
TGAACATTGTTGACAGTGTT+GGG + Chr1:69679388-69679407 MsG0180003885.01.T01:CDS 35.0%
TGAGAAGTTACCTTAAATGC+AGG - Chr1:69678886-69678905 None:intergenic 35.0%
TGGTATGAAGTGGCAAAATA+AGG + Chr1:69678578-69678597 MsG0180003885.01.T01:intron 35.0%
TGTGAATTGTGAGTTTAAGG+GGG + Chr1:69678459-69678478 MsG0180003885.01.T01:intron 35.0%
TGTGTATCAATTGGTCATGT+TGG + Chr1:69677268-69677287 MsG0180003885.01.T01:CDS 35.0%
TTAGCATTTGCAAATGCAGT+AGG + Chr1:69679477-69679496 MsG0180003885.01.T01:CDS 35.0%
TTGATCCTTTACAGAGACAT+GGG + Chr1:69677425-69677444 MsG0180003885.01.T01:CDS 35.0%
TTTGTAGCTGCTATTGCATA+TGG + Chr1:69679423-69679442 MsG0180003885.01.T01:CDS 35.0%
! GGTATTTTTCCTCCCATAAA+GGG + Chr1:69679995-69680014 MsG0180003885.01.T01:three_prime_UTR 35.0%
! TCCATGAAGATCGTGAATTT+TGG + Chr1:69679583-69679602 MsG0180003885.01.T01:CDS 35.0%
!! GCATAGAAGTGTTTCATAAG+AGG - Chr1:69677395-69677414 None:intergenic 35.0%
AACCACGTCAAATGTTCAGA+AGG - Chr1:69679131-69679150 None:intergenic 40.0%
AACGGCAGAAACACTGTATA+AGG - Chr1:69678133-69678152 None:intergenic 40.0%
AACTCTTGCCCAGCTAATAT+CGG - Chr1:69678772-69678791 None:intergenic 40.0%
ACTACTGAGAGTAGTAAACC+AGG - Chr1:69677672-69677691 None:intergenic 40.0%
ATAGGAGATCCGATATTAGC+TGG + Chr1:69678760-69678779 MsG0180003885.01.T01:CDS 40.0%
ATTTGCAAATGCAGTAGGTG+CGG + Chr1:69679482-69679501 MsG0180003885.01.T01:CDS 40.0%
CAAAACCCATGTCTCTGTAA+AGG - Chr1:69677433-69677452 None:intergenic 40.0%
CAACTTTGTCCCATTTGACA+AGG + Chr1:69679689-69679708 MsG0180003885.01.T01:CDS 40.0%
CCTTCTACTTAACTGTGCTA+CGG + Chr1:69678989-69679008 MsG0180003885.01.T01:intron 40.0%
CTAAAATCAGCTCGACTAGT+AGG - Chr1:69677540-69677559 None:intergenic 40.0%
GCAAGGATCCTGCATTTAAT+TGG + Chr1:69677559-69677578 MsG0180003885.01.T01:CDS 40.0%
GGCAAGAGTTGCTTAAAAGA+GGG + Chr1:69678782-69678801 MsG0180003885.01.T01:CDS 40.0%
GTGAACATTGTTGACAGTGT+TGG + Chr1:69679387-69679406 MsG0180003885.01.T01:CDS 40.0%
GTGAATTGTGAGTTTAAGGG+GGG + Chr1:69678460-69678479 MsG0180003885.01.T01:intron 40.0%
GTTGATCCTTTACAGAGACA+TGG + Chr1:69677424-69677443 MsG0180003885.01.T01:CDS 40.0%
TAGCACAGTTAAGTAGAAGG+TGG - Chr1:69678989-69679008 None:intergenic 40.0%
TAGGAGATCCGATATTAGCT+GGG + Chr1:69678761-69678780 MsG0180003885.01.T01:CDS 40.0%
TAGTCCACAACTAAGAGGAA+CGG - Chr1:69678151-69678170 None:intergenic 40.0%
TCAGAATGATGGTTTCACGT+TGG - Chr1:69678520-69678539 None:intergenic 40.0%
TCTTCTTCTAACATCTGACG+AGG + Chr1:69677815-69677834 MsG0180003885.01.T01:CDS 40.0%
TGAATTGTGAGTTTAAGGGG+GGG + Chr1:69678461-69678480 MsG0180003885.01.T01:intron 40.0%
TGGTTTACTACTCTCAGTAG+TGG + Chr1:69677671-69677690 MsG0180003885.01.T01:CDS 40.0%
TTACAATCACCCACTTTGTG+CGG - Chr1:69678810-69678829 None:intergenic 40.0%
TTGCTCAGCCAATTAAATGC+AGG - Chr1:69677570-69677589 None:intergenic 40.0%
! GAATGTAGCATCTCTGGAAA+AGG + Chr1:69679533-69679552 MsG0180003885.01.T01:CDS 40.0%
! GAGGCAGATTCCATTTCTTT+TGG + Chr1:69680019-69680038 MsG0180003885.01.T01:three_prime_UTR 40.0%
! GGATTTGATGATTTCTCTCC+TGG + Chr1:69677651-69677670 MsG0180003885.01.T01:CDS 40.0%
! GGGTATTTTTCCTCCCATAA+AGG + Chr1:69679994-69680013 MsG0180003885.01.T01:three_prime_UTR 40.0%
! GTCTTTGGAAACTCAAGCTT+GGG - Chr1:69679732-69679751 None:intergenic 40.0%
! GTTTTACACTGACATCCAAC+AGG - Chr1:69678607-69678626 None:intergenic 40.0%
! TAATTGATGGCAGGGAAAAG+TGG + Chr1:69680111-69680130 MsG0180003885.01.T01:three_prime_UTR 40.0%
! TCTGGATTCTCTCAACCTTT+TGG + Chr1:69679815-69679834 MsG0180003885.01.T01:three_prime_UTR 40.0%
! TGATTTGGAGCTGTGATTGT+TGG + Chr1:69678398-69678417 MsG0180003885.01.T01:intron 40.0%
! TGTCTTTGGAAACTCAAGCT+TGG - Chr1:69679733-69679752 None:intergenic 40.0%
!! TACAGAGACATGGGTTTTGT+AGG + Chr1:69677434-69677453 MsG0180003885.01.T01:CDS 40.0%
!! TAGTCGAGCTGATTTTAGCA+AGG + Chr1:69677542-69677561 MsG0180003885.01.T01:intron 40.0%
AGGTTGAGAGAATCCAGAGA+AGG - Chr1:69679813-69679832 None:intergenic 45.0%
ATGCAGGCTGAGTCATTAAC+TGG + Chr1:69678736-69678755 MsG0180003885.01.T01:intron 45.0%
CAGAGATGCTACATTCCTAC+CGG - Chr1:69679529-69679548 None:intergenic 45.0%
CAGAGGCAACCTTGTCAAAT+GGG - Chr1:69679701-69679720 None:intergenic 45.0%
CCGTAGCACAGTTAAGTAGA+AGG - Chr1:69678992-69679011 None:intergenic 45.0%
CTTGTGAACTAACCCTTCTC+TGG + Chr1:69679797-69679816 MsG0180003885.01.T01:three_prime_UTR 45.0%
GAATCTGCCTCACCCTTTAT+GGG - Chr1:69680010-69680029 None:intergenic 45.0%
GAGCTCTTAACCAGTTTCTG+AGG + Chr1:69677781-69677800 MsG0180003885.01.T01:CDS 45.0%
GATGATACTGTCAGCAGTTC+TGG + Chr1:69677367-69677386 MsG0180003885.01.T01:CDS 45.0%
GCTGAGTCATTAACTGGCAT+AGG + Chr1:69678742-69678761 MsG0180003885.01.T01:CDS 45.0%
GCTTGAGTTTCCAAAGACAG+TGG + Chr1:69679734-69679753 MsG0180003885.01.T01:CDS 45.0%
GGGCAAGAGTTGCTTAAAAG+AGG + Chr1:69678781-69678800 MsG0180003885.01.T01:CDS 45.0%
GGTTGAGAGAATCCAGAGAA+GGG - Chr1:69679812-69679831 None:intergenic 45.0%
TAGAGGATGAAGGAGCCAAA+AGG - Chr1:69679833-69679852 None:intergenic 45.0%
TCAGAGGCAACCTTGTCAAA+TGG - Chr1:69679702-69679721 None:intergenic 45.0%
TCAGATGTGCTTCGTGATGA+GGG + Chr1:69677316-69677335 MsG0180003885.01.T01:CDS 45.0%
TCCAGTAGTCCACAACTAAG+AGG - Chr1:69678156-69678175 None:intergenic 45.0%
! ATTGTTGACAGTGTTGGGTG+TGG + Chr1:69679393-69679412 MsG0180003885.01.T01:CDS 45.0%
! TCCTCTTAGTTGTGGACTAC+TGG + Chr1:69678152-69678171 MsG0180003885.01.T01:intron 45.0%
! TTTTCCTCCCATAAAGGGTG+AGG + Chr1:69680000-69680019 MsG0180003885.01.T01:three_prime_UTR 45.0%
!! ATGAGGGCATTAGCATGGTT+GGG + Chr1:69677332-69677351 MsG0180003885.01.T01:CDS 45.0%
!! GAAGGGTTAGTTCACAAGAG+TGG - Chr1:69679795-69679814 None:intergenic 45.0%
AAAGAGGGATCCGCACAAAG+TGG + Chr1:69678797-69678816 MsG0180003885.01.T01:CDS 50.0%
AAGAGGGATCCGCACAAAGT+GGG + Chr1:69678798-69678817 MsG0180003885.01.T01:CDS 50.0%
AGCGTGTGCACCTGCATTTA+AGG + Chr1:69678873-69678892 MsG0180003885.01.T01:CDS 50.0%
CGGTAGGAATGTAGCATCTC+TGG + Chr1:69679527-69679546 MsG0180003885.01.T01:CDS 50.0%
CGTCACTCATCCTCAGAAAC+TGG - Chr1:69677794-69677813 None:intergenic 50.0%
CTGTTGTTCTTGAGTCCCAG+AGG - Chr1:69677760-69677779 None:intergenic 50.0%
GGAATCTGCCTCACCCTTTA+TGG - Chr1:69680011-69680030 None:intergenic 50.0%
GGCAAAATAAGGGCTCCTGT+TGG + Chr1:69678589-69678608 MsG0180003885.01.T01:intron 50.0%
GGCACATTCTCCACTGTCTT+TGG - Chr1:69679747-69679766 None:intergenic 50.0%
GGCCTTCTGAACATTTGACG+TGG + Chr1:69679126-69679145 MsG0180003885.01.T01:intron 50.0%
GGGCTGACATGTCAGAATGA+TGG - Chr1:69678531-69678550 None:intergenic 50.0%
GTCAGATGTGCTTCGTGATG+AGG + Chr1:69677315-69677334 MsG0180003885.01.T01:CDS 50.0%
TCTGCCGTTCCTCTTAGTTG+TGG + Chr1:69678144-69678163 MsG0180003885.01.T01:intron 50.0%
! GTGGACTGTGCTGTTGAAGT+TGG + Chr1:69677690-69677709 MsG0180003885.01.T01:CDS 50.0%
!! GATGAGGGCATTAGCATGGT+TGG + Chr1:69677331-69677350 MsG0180003885.01.T01:CDS 50.0%
!! TCGTGATGAGGGCATTAGCA+TGG + Chr1:69677327-69677346 MsG0180003885.01.T01:CDS 50.0%
AAGCTTGGGCAAGAGCTCAG+AGG - Chr1:69679718-69679737 None:intergenic 55.0%
GTGGAAAGAGCCTCTCCTCT+GGG + Chr1:69677742-69677761 MsG0180003885.01.T01:CDS 55.0%
GTTCTTGAGTCCCAGAGGAG+AGG - Chr1:69677755-69677774 None:intergenic 55.0%
TCTGCCTCACCCTTTATGGG+AGG - Chr1:69680007-69680026 None:intergenic 55.0%
TTCTTTGATCCGGGACCACG+TGG + Chr1:69677723-69677742 MsG0180003885.01.T01:CDS 55.0%
!! TCCTAGCCTTGCAGCTGCTA+TGG - Chr1:69677242-69677261 None:intergenic 55.0%
AGGCTCTTTCCACGTGGTCC+CGG - Chr1:69677735-69677754 None:intergenic 60.0%
AGTAGGTGCGGCAACAGCCA+TGG + Chr1:69679494-69679513 MsG0180003885.01.T01:CDS 60.0%
CCTTGCAGCTGCTATGGCCA+TGG - Chr1:69677236-69677255 None:intergenic 60.0%
CGTGGAAAGAGCCTCTCCTC+TGG + Chr1:69677741-69677760 MsG0180003885.01.T01:CDS 60.0%
GAGGAGAGGCTCTTTCCACG+TGG - Chr1:69677741-69677760 None:intergenic 60.0%
GCCATAGCAGCTGCAAGGCT+AGG + Chr1:69677238-69677257 MsG0180003885.01.T01:CDS 60.0%
GTAGGTGCGGCAACAGCCAT+GGG + Chr1:69679495-69679514 MsG0180003885.01.T01:CDS 60.0%
! ACAGCCATGGGCTGTGGTGC+CGG + Chr1:69679507-69679526 MsG0180003885.01.T01:CDS 65.0%
CCTACCGGCACCACAGCCCA+TGG - Chr1:69679514-69679533 None:intergenic 70.0%
! GCGGCAACAGCCATGGGCTG+TGG + Chr1:69679501-69679520 MsG0180003885.01.T01:CDS 70.0%
!! CCATGGGCTGTGGTGCCGGT+AGG + Chr1:69679511-69679530 MsG0180003885.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 69677235 69680232 69677235 ID=MsG0180003885.01;Name=MsG0180003885.01
Chr1 mRNA 69677235 69680232 69677235 ID=MsG0180003885.01.T01;Parent=MsG0180003885.01;Name=MsG0180003885.01.T01;_AED=0.47;_eAED=0.47;_QI=0|1|1|1|0.75|0.8|5|459|350
Chr1 exon 69677235 69677455 69677235 ID=MsG0180003885.01.T01:exon:6040;Parent=MsG0180003885.01.T01
Chr1 exon 69677545 69677836 69677545 ID=MsG0180003885.01.T01:exon:6041;Parent=MsG0180003885.01.T01
Chr1 exon 69678742 69678894 69678742 ID=MsG0180003885.01.T01:exon:6042;Parent=MsG0180003885.01.T01
Chr1 exon 69679387 69680232 69679387 ID=MsG0180003885.01.T01:exon:6043;Parent=MsG0180003885.01.T01
Chr1 CDS 69677235 69677455 69677235 ID=MsG0180003885.01.T01:cds;Parent=MsG0180003885.01.T01
Chr1 CDS 69677545 69677836 69677545 ID=MsG0180003885.01.T01:cds;Parent=MsG0180003885.01.T01
Chr1 CDS 69678742 69678894 69678742 ID=MsG0180003885.01.T01:cds;Parent=MsG0180003885.01.T01
Chr1 CDS 69679387 69679773 69679387 ID=MsG0180003885.01.T01:cds;Parent=MsG0180003885.01.T01
Chr1 three_prime_UTR 69679774 69680232 69679774 ID=MsG0180003885.01.T01:three_prime_utr;Parent=MsG0180003885.01.T01
Gene Sequence

>MsG0180003885.01.T01

ATGGCCATAGCAGCTGCAAGGCTAGGACTTAACTGTGTATCAATTGGTCATGTTGGTAATGAAATCTATGGGAACTTTCTGTCAGATGTGCTTCGTGATGAGGGCATTAGCATGGTTGGGATGAGTACTAATGATGATACTGTCAGCAGTTCTGGTGCCTCTTATGAAACACTTCTATGCTGGGTTCTCGTTGATCCTTTACAGAGACATGGGTTTTGTAGTCGAGCTGATTTTAGCAAGGATCCTGCATTTAATTGGCTGAGCAAAATGTCCAGAGAAGCAAAGTTAGCTATTAAAAATTCAAAGGTTTTGTTTTGTAATGGATATGGATTTGATGATTTCTCTCCTGGTTTACTACTCTCAGTAGTGGACTGTGCTGTTGAAGTTGGCACATCAATCTTCTTTGATCCGGGACCACGTGGAAAGAGCCTCTCCTCTGGGACTCAAGAACAACAGAGAGCTCTTAACCAGTTTCTGAGGATGAGTGACGTTCTTCTTCTAACATCTGACGAGGCTGAGTCATTAACTGGCATAGGAGATCCGATATTAGCTGGGCAAGAGTTGCTTAAAAGAGGGATCCGCACAAAGTGGGTGATTGTAAAAATGGGTCTTAAGGGTTCAATTCTTATAACTACATCAAGTATAGCGTGTGCACCTGCATTTAAGGTGAACATTGTTGACAGTGTTGGGTGTGGAGACAGTTTTGTAGCTGCTATTGCATATGGTTTTATACATAATTTGCCAATGGTTAATACATTAGCATTTGCAAATGCAGTAGGTGCGGCAACAGCCATGGGCTGTGGTGCCGGTAGGAATGTAGCATCTCTGGAAAAGGTAGTAGATATATTAAGATCATCGAGCTTCCATGAAGATCGTGAATTTTGGACCGACATTCTTGAAAAGAAAGTGATAGATCAGGAAGTAACATGTCTGTCAAATATTTTGATGAATGGAAACAGAAATCATGTCAACTTTGTCCCATTTGACAAGGTTGCCTCTGAGCTCTTGCCCAAGCTTGAGTTTCCAAAGACAGTGGAGAATGTGCCAACTTGA

Protein sequence

>MsG0180003885.01.T01

MAIAAARLGLNCVSIGHVGNEIYGNFLSDVLRDEGISMVGMSTNDDTVSSSGASYETLLCWVLVDPLQRHGFCSRADFSKDPAFNWLSKMSREAKLAIKNSKVLFCNGYGFDDFSPGLLLSVVDCAVEVGTSIFFDPGPRGKSLSSGTQEQQRALNQFLRMSDVLLLTSDEAESLTGIGDPILAGQELLKRGIRTKWVIVKMGLKGSILITTSSIACAPAFKVNIVDSVGCGDSFVAAIAYGFIHNLPMVNTLAFANAVGAATAMGCGAGRNVASLEKVVDILRSSSFHEDREFWTDILEKKVIDQEVTCLSNILMNGNRNHVNFVPFDKVASELLPKLEFPKTVENVPT*