AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041673.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 37 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGAATTGAATTTGAAAA+TGG 0.155783 7:+93758155 MsG0780041673.01.T01:exon
TGAGAATCATATAATTAATT+AGG 0.162529 7:-93763664 None:intergenic
ACCTGAGAGAGGTTGAAAAT+TGG 0.242506 7:-93758261 None:intergenic
ACTGCTCCGGTCGCTGGCCT+TGG 0.308462 7:+93761144 MsG0780041673.01.T01:CDS
TGTTGTTGTTGTTGAATTTA+GGG 0.326426 7:-93758206 None:intergenic
AAATTCAATTCAAAGAGTTT+AGG 0.337707 7:-93758147 None:intergenic
TGTTGTGTATGATGATCATT+TGG 0.358400 7:+93763619 MsG0780041673.01.T01:three_prime_UTR
CCTGAGAGAGGTTGAAAATT+GGG 0.377207 7:-93758260 None:intergenic
AATACATTTCTTTATAAAGT+AGG 0.384904 7:+93763563 MsG0780041673.01.T01:three_prime_UTR
AATAGCAGGGACTATATTGA+TGG 0.392516 7:+93758808 MsG0780041673.01.T01:CDS
GAGAATCATATAATTAATTA+GGG 0.406869 7:-93763663 None:intergenic
CAGGAAGATGGTGAAGATCC+AGG 0.419019 7:+93761098 MsG0780041673.01.T01:intron
CTCCGTCACAATAGAGGAAA+AGG 0.431270 7:-93763350 None:intergenic
GAAGAGACTGCTCCGGTCGC+TGG 0.444189 7:+93761138 MsG0780041673.01.T01:CDS
AGTCTCTACATCTTAATAGC+AGG 0.459262 7:+93758794 MsG0780041673.01.T01:intron
GGTTTCTACGTCTTCAAGAA+AGG 0.463157 7:-93763296 None:intergenic
TCCAGGGAGAAGACTGCGTA+TGG 0.481479 7:+93761115 MsG0780041673.01.T01:CDS
AAAGAACTCCGTCACAATAG+AGG 0.483770 7:-93763356 None:intergenic
AAAATGATGTGCGCATCAAT+TGG 0.498464 7:+93760746 MsG0780041673.01.T01:CDS
TGCGGTCATCACAACTTGAC+TGG 0.498884 7:-93763317 None:intergenic
CCCATACGCAGTCTTCTCCC+TGG 0.516656 7:-93761116 None:intergenic
CCAAAACCAAGGCCAGCGAC+CGG 0.521729 7:-93761150 None:intergenic
AGGAACAAGAAGTGTTGGAG+TGG 0.521969 7:+93758077 MsG0780041673.01.T01:five_prime_UTR
TGTTCAGGAACAAGAAGTGT+TGG 0.539296 7:+93758072 None:intergenic
GTTGTGTATGATGATCATTT+GGG 0.545140 7:+93763620 MsG0780041673.01.T01:three_prime_UTR
GTCTCTACATCTTAATAGCA+GGG 0.546023 7:+93758795 MsG0780041673.01.T01:intron
GTTGATAATCACCGCATCAT+CGG 0.577270 7:+93763231 MsG0780041673.01.T01:CDS
AGGAAGATGGTGAAGATCCA+GGG 0.602881 7:+93761099 MsG0780041673.01.T01:intron
GGAACAAGAAGTGTTGGAGT+GGG 0.628937 7:+93758078 MsG0780041673.01.T01:five_prime_UTR
CCAGGGAGAAGACTGCGTAT+GGG 0.638760 7:+93761116 MsG0780041673.01.T01:CDS
CGTATGGGAAGAGACTGCTC+CGG 0.644579 7:+93761131 MsG0780041673.01.T01:CDS
TAATGTTGGATACAGGAAGA+TGG 0.650849 7:+93761086 MsG0780041673.01.T01:intron
GAGAGGTTGAAAATTGGGAA+CGG 0.656054 7:-93758255 None:intergenic
AATCATATAATTAATTAGGG+AGG 0.658857 7:-93763660 None:intergenic
GAGTGAGTGTTACCTGAGAG+AGG 0.667674 7:-93758272 None:intergenic
AAAGCATGATGCCGATGATG+CGG 0.684174 7:-93763242 None:intergenic
GGAAAAGGAACACAGTACTG+CGG 0.757447 7:-93763335 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAAAATAAAAAATAACAT+TGG - Chr7:93758697-93758716 None:intergenic 10.0%
!! AATACATTTCTTTATAAAGT+AGG + Chr7:93763410-93763429 MsG0780041673.01.T01:intron 15.0%
!! AATGAAATTTAATATTGCAA+AGG - Chr7:93762715-93762734 None:intergenic 15.0%
!! AGAAAATATTAATCTTTATC+TGG - Chr7:93761991-93762010 None:intergenic 15.0%
!! ATGTAATATGATAGAATAAT+AGG - Chr7:93758481-93758500 None:intergenic 15.0%
!! ATTAGTTATTTACAAATCAA+AGG + Chr7:93762981-93763000 MsG0780041673.01.T01:intron 15.0%
!! ATTTAAATACAAATTACTCA+TGG - Chr7:93760506-93760525 None:intergenic 15.0%
!! GAGAATCATATAATTAATTA+GGG - Chr7:93763666-93763685 None:intergenic 15.0%
!! TGAGAATCATATAATTAATT+AGG - Chr7:93763667-93763686 None:intergenic 15.0%
!! TTTGCAATATTAAATTTCAT+TGG + Chr7:93762714-93762733 MsG0780041673.01.T01:intron 15.0%
!!! AATTTTAAAGAAGAAATTTG+TGG + Chr7:93761676-93761695 MsG0780041673.01.T01:intron 15.0%
!!! ATTATTGTTGTATAGATTTT+AGG + Chr7:93758509-93758528 MsG0780041673.01.T01:intron 15.0%
!!! GAAATAATTAAAAGCATTAT+GGG - Chr7:93759500-93759519 None:intergenic 15.0%
!!! TAATTATTTCGTTTTTTATG+AGG + Chr7:93759510-93759529 MsG0780041673.01.T01:intron 15.0%
!! AAATTCAATTCAAAGAGTTT+AGG - Chr7:93758150-93758169 None:intergenic 20.0%
!! AAGAAAAACATATAACTACA+TGG - Chr7:93759547-93759566 None:intergenic 20.0%
!! AAGCAAATAAACAAAATGTT+AGG - Chr7:93760161-93760180 None:intergenic 20.0%
!! AATATGATTAATCGTATTCT+TGG - Chr7:93760012-93760031 None:intergenic 20.0%
!! AATCATATAATTAATTAGGG+AGG - Chr7:93763663-93763682 None:intergenic 20.0%
!! AGAAATTAAAATCGATTGAA+AGG - Chr7:93759137-93759156 None:intergenic 20.0%
!! AGACAAAAACAAAATGAAAA+AGG + Chr7:93758853-93758872 MsG0780041673.01.T01:CDS 20.0%
!! AGCAAATAAACAAAATGTTA+GGG - Chr7:93760160-93760179 None:intergenic 20.0%
!! ATAAGAAAATAGAAAACTTC+AGG - Chr7:93761933-93761952 None:intergenic 20.0%
!! ATATACACATTAAGAAACAT+TGG - Chr7:93762594-93762613 None:intergenic 20.0%
!! CAAATTGCAATATATAGAAA+AGG - Chr7:93762679-93762698 None:intergenic 20.0%
!! CTTTGAATTGAATTTGAAAA+TGG + Chr7:93758155-93758174 MsG0780041673.01.T01:exon 20.0%
!! GAAATTAAAATCGATTGAAA+GGG - Chr7:93759136-93759155 None:intergenic 20.0%
!! GACAAAAACAAAATGAAAAA+GGG + Chr7:93758854-93758873 MsG0780041673.01.T01:CDS 20.0%
!! TGTAATCTACAATAATAACA+AGG + Chr7:93761263-93761282 MsG0780041673.01.T01:intron 20.0%
!! TGTCATGATGAAAAATAATT+TGG - Chr7:93761595-93761614 None:intergenic 20.0%
!!! AATTCTAAGATTGTATTGAT+AGG - Chr7:93761014-93761033 None:intergenic 20.0%
!!! AATTTTGTATACGAAGAATT+TGG + Chr7:93759926-93759945 MsG0780041673.01.T01:intron 20.0%
!!! ACAGATTTTCATATACTTAA+GGG - Chr7:93758768-93758787 None:intergenic 20.0%
!!! ACATCAAATTAGTTTTCTAA+AGG - Chr7:93762960-93762979 None:intergenic 20.0%
!!! AGTTTGATTTCACTAATATA+TGG - Chr7:93762813-93762832 None:intergenic 20.0%
!!! ATAATTTTCATTTATCTTGG+TGG + Chr7:93761635-93761654 MsG0780041673.01.T01:intron 20.0%
!!! ATATTTTCTAAATTGAATGC+AGG + Chr7:93760194-93760213 MsG0780041673.01.T01:intron 20.0%
!!! ATATTTTCTGTGTACATTTT+TGG + Chr7:93762002-93762021 MsG0780041673.01.T01:intron 20.0%
!!! ATTTATTTTCATCTACAGTT+TGG + Chr7:93760527-93760546 MsG0780041673.01.T01:intron 20.0%
!!! ATTTTGTATACGAAGAATTT+GGG + Chr7:93759927-93759946 MsG0780041673.01.T01:intron 20.0%
!!! CGAAATAATTAAAAGCATTA+TGG - Chr7:93759501-93759520 None:intergenic 20.0%
!!! GAAAAGTATGAGTATAAATA+GGG + Chr7:93759007-93759026 MsG0780041673.01.T01:intron 20.0%
!!! GGCAAAAAAATTTTTGATTT+TGG + Chr7:93758665-93758684 MsG0780041673.01.T01:intron 20.0%
!!! GGGTTTTTAAATTTTCTAAT+GGG + Chr7:93758951-93758970 MsG0780041673.01.T01:intron 20.0%
!!! TGAAAAGTATGAGTATAAAT+AGG + Chr7:93759006-93759025 MsG0780041673.01.T01:intron 20.0%
!!! TGCATAATTTTCATTTATCT+TGG + Chr7:93761632-93761651 MsG0780041673.01.T01:intron 20.0%
!!! TGTGGGAATTATTTTATTTA+AGG - Chr7:93760086-93760105 None:intergenic 20.0%
!!! TTGTCTTTTTAAAGAAAAGA+TGG + Chr7:93761316-93761335 MsG0780041673.01.T01:intron 20.0%
! AAAATGTTAGGGTGAAATAT+TGG - Chr7:93760149-93760168 None:intergenic 25.0%
! AAATGTTAGGGTGAAATATT+GGG - Chr7:93760148-93760167 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - Chr7:93761439-93761458 None:intergenic 25.0%
! AATATACACTGGTAATAATG+TGG - Chr7:93763065-93763084 None:intergenic 25.0%
! ACATCTATTGTAATTCAACA+TGG - Chr7:93761048-93761067 None:intergenic 25.0%
! AGCAGTAATAAAAGAGTAAT+TGG - Chr7:93760443-93760462 None:intergenic 25.0%
! AGTATAAATAGGGTATGTTT+GGG + Chr7:93759017-93759036 MsG0780041673.01.T01:intron 25.0%
! ATAATGTCAAAAAATCCAAG+TGG - Chr7:93760687-93760706 None:intergenic 25.0%
! ATGGCATGTTTAATTCATAA+GGG - Chr7:93760487-93760506 None:intergenic 25.0%
! ATGGTTGAATTGTGTTAATT+AGG + Chr7:93760395-93760414 MsG0780041673.01.T01:intron 25.0%
! ATTAGTTAGTTAACATACTC+TGG - Chr7:93758625-93758644 None:intergenic 25.0%
! GTAATTCAACATGGTTAAAA+TGG - Chr7:93761039-93761058 None:intergenic 25.0%
! GTTATTATTGTAGATTACAG+AGG - Chr7:93761262-93761281 None:intergenic 25.0%
! TAACCCAATACATTAAACAA+GGG - Chr7:93763172-93763191 None:intergenic 25.0%
! TCCTTAAAATGACATTAACT+CGG - Chr7:93762878-93762897 None:intergenic 25.0%
! TCTTCGTATACAAAATTGAT+AGG - Chr7:93759923-93759942 None:intergenic 25.0%
! TGTCAAAATATCATTTCTCT+TGG + Chr7:93761554-93761573 MsG0780041673.01.T01:intron 25.0%
! TTAACCCAATACATTAAACA+AGG - Chr7:93763173-93763192 None:intergenic 25.0%
! TTGACTATCAATATGGTTTA+GGG - Chr7:93758739-93758758 None:intergenic 25.0%
!! AAAAGTATGGCACATTTAAA+TGG - Chr7:93762367-93762386 None:intergenic 25.0%
!! CGGGTTTTTAAATTTTCTAA+TGG + Chr7:93758950-93758969 MsG0780041673.01.T01:intron 25.0%
!! GAAAAATTGATTTAGCAAGA+AGG - Chr7:93762117-93762136 None:intergenic 25.0%
!! GACAGATTTTCATATACTTA+AGG - Chr7:93758769-93758788 None:intergenic 25.0%
!! GGGATCTTTTATAGATAATA+TGG + Chr7:93763272-93763291 MsG0780041673.01.T01:CDS 25.0%
!! GTGTATTTTTCTTAGAATTC+TGG + Chr7:93762171-93762190 MsG0780041673.01.T01:intron 25.0%
!! TAATTTAATGTACTGACACA+TGG + Chr7:93759566-93759585 MsG0780041673.01.T01:intron 25.0%
!! TGTTGTTGTTGTTGAATTTA+GGG - Chr7:93758209-93758228 None:intergenic 25.0%
!! TTAACTGATGATGTATATGT+AGG - Chr7:93761798-93761817 None:intergenic 25.0%
!! TTATTCCATGATGTTTTCTT+GGG - Chr7:93758362-93758381 None:intergenic 25.0%
!! TTCATGAATCATGATAATGT+TGG + Chr7:93761072-93761091 MsG0780041673.01.T01:intron 25.0%
!! TTGTTGTTGTTGTTGAATTT+AGG - Chr7:93758210-93758229 None:intergenic 25.0%
!! TTTCTTTTGCATTCTTTATG+TGG + Chr7:93762204-93762223 MsG0780041673.01.T01:intron 25.0%
!! TTTTGTGAGTAGTAAATGAA+CGG + Chr7:93760782-93760801 MsG0780041673.01.T01:intron 25.0%
!!! AGTGTTTTTTAGAAGAAGAA+GGG - Chr7:93758305-93758324 None:intergenic 25.0%
!!! CATTGTAATGAAAAGTGTTA+AGG - Chr7:93759980-93759999 None:intergenic 25.0%
!!! GAGTATTACTTTTTAACACA+TGG + Chr7:93762325-93762344 MsG0780041673.01.T01:intron 25.0%
!!! TAAGATTGATTTTAAAGCAC+AGG + Chr7:93762632-93762651 MsG0780041673.01.T01:intron 25.0%
!!! TTAACTCTTCTCTATTTTTC+TGG + Chr7:93758644-93758663 MsG0780041673.01.T01:intron 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + Chr7:93761438-93761457 MsG0780041673.01.T01:intron 25.0%
AAAAAACACTGCTTTCTTAC+TGG + Chr7:93758315-93758334 MsG0780041673.01.T01:intron 30.0%
AAAAACATGGAGAGAGAAAA+AGG + Chr7:93761463-93761482 MsG0780041673.01.T01:intron 30.0%
AAAACAAGGTTGTCAAAAAC+AGG - Chr7:93761425-93761444 None:intergenic 30.0%
AACATGATGAAATTTGACAG+TGG - Chr7:93760603-93760622 None:intergenic 30.0%
AAGAAAAGAATAGAGCCTTA+AGG - Chr7:93759352-93759371 None:intergenic 30.0%
AATATAGCATAGATGATGTG+TGG - Chr7:93760104-93760123 None:intergenic 30.0%
AATGTCGCATATATCTTAAG+AGG - Chr7:93762779-93762798 None:intergenic 30.0%
AATGTTAGGGTGAAATATTG+GGG - Chr7:93760147-93760166 None:intergenic 30.0%
AATTGAAGGATCAATAGATG+CGG + Chr7:93762921-93762940 MsG0780041673.01.T01:intron 30.0%
AATTGAATGCAGGTTTCAAA+AGG + Chr7:93760204-93760223 MsG0780041673.01.T01:intron 30.0%
ACAAAAACATGAAGACATGA+CGG + Chr7:93759737-93759756 MsG0780041673.01.T01:intron 30.0%
AGTAATGAATTGTCAGATAG+TGG + Chr7:93762481-93762500 MsG0780041673.01.T01:intron 30.0%
ATATAGCATAGATGATGTGT+GGG - Chr7:93760103-93760122 None:intergenic 30.0%
ATCCTTCCACTAATAAAGAA+AGG - Chr7:93761363-93761382 None:intergenic 30.0%
ATCGTGTCAATTTCTCAATA+GGG - Chr7:93758541-93758560 None:intergenic 30.0%
ATTACTAAATCGCGGAAATA+TGG - Chr7:93762467-93762486 None:intergenic 30.0%
CAAAATATCATTTCTCTTGG+TGG + Chr7:93761557-93761576 MsG0780041673.01.T01:intron 30.0%
CAAATTTGTAGAAAGTCACT+TGG - Chr7:93759476-93759495 None:intergenic 30.0%
CAATTCAACCATAAAGTTTG+TGG - Chr7:93760387-93760406 None:intergenic 30.0%
CACATTAAGAAACATTGGAT+TGG - Chr7:93762589-93762608 None:intergenic 30.0%
CAGCATATACTAAGAAAAGA+AGG + Chr7:93758566-93758585 MsG0780041673.01.T01:intron 30.0%
CATCTTCCTTTCTTTATTAG+TGG + Chr7:93761354-93761373 MsG0780041673.01.T01:intron 30.0%
CATGGATCATATTATTCACA+TGG - Chr7:93762144-93762163 None:intergenic 30.0%
CATGGCATGTTTAATTCATA+AGG - Chr7:93760488-93760507 None:intergenic 30.0%
CTTCTTATTGGTCAAAAACA+TGG + Chr7:93761450-93761469 MsG0780041673.01.T01:intron 30.0%
GACAATTCATTACTAAATCG+CGG - Chr7:93762475-93762494 None:intergenic 30.0%
GAGAGTTTCATATTCTATGA+CGG + Chr7:93760988-93761007 MsG0780041673.01.T01:intron 30.0%
GAGTATAAATAGGGTATGTT+TGG + Chr7:93759016-93759035 MsG0780041673.01.T01:intron 30.0%
GTTGACTATCAATATGGTTT+AGG - Chr7:93758740-93758759 None:intergenic 30.0%
GTTGTGTATGATGATCATTT+GGG + Chr7:93763620-93763639 MsG0780041673.01.T01:three_prime_UTR 30.0%
TGAAACTCTCACATTAATTG+TGG - Chr7:93760978-93760997 None:intergenic 30.0%
TGTTGACGATGTAAAATTGA+AGG + Chr7:93762907-93762926 MsG0780041673.01.T01:intron 30.0%
TGTTGTGTATGATGATCATT+TGG + Chr7:93763619-93763638 MsG0780041673.01.T01:three_prime_UTR 30.0%
TTACCAGTGTATATTGTTCT+TGG + Chr7:93763070-93763089 MsG0780041673.01.T01:intron 30.0%
TTCCTTTCTTTATTAGTGGA+AGG + Chr7:93761358-93761377 MsG0780041673.01.T01:intron 30.0%
! AAATTATTGCTGCTTCATCA+AGG - Chr7:93759851-93759870 None:intergenic 30.0%
! AACCACTTTATGACAACTTT+TGG - Chr7:93761535-93761554 None:intergenic 30.0%
! AAGAAGAAGCAGATGATTTT+GGG - Chr7:93758385-93758404 None:intergenic 30.0%
! ACATTAATTGTGGAGCTTTT+CGG - Chr7:93760968-93760987 None:intergenic 30.0%
! ATCATGATAATGTTGGATAC+AGG + Chr7:93761079-93761098 MsG0780041673.01.T01:intron 30.0%
! ATTTTCATCTACAGTTTGGT+AGG + Chr7:93760531-93760550 MsG0780041673.01.T01:intron 30.0%
! GACATTTTCATTGTATTTGC+AGG + Chr7:93763207-93763226 MsG0780041673.01.T01:intron 30.0%
! GAGTAAGTTGACTATCAATA+TGG - Chr7:93758746-93758765 None:intergenic 30.0%
! GTTATTCCATGATGTTTTCT+TGG - Chr7:93758363-93758382 None:intergenic 30.0%
! GTTTTTGTGTGCAATTTCAA+TGG - Chr7:93759725-93759744 None:intergenic 30.0%
! TAATTAGTCTGTCTTGAATC+AGG + Chr7:93763114-93763133 MsG0780041673.01.T01:intron 30.0%
! TGTCCCTTGTTTAATGTATT+GGG + Chr7:93763166-93763185 MsG0780041673.01.T01:intron 30.0%
! TGTGACTTTGGATCATTTTA+AGG + Chr7:93759671-93759690 MsG0780041673.01.T01:intron 30.0%
! TTCTAAGAAAAATACACTGC+AGG - Chr7:93762168-93762187 None:intergenic 30.0%
! TTGTCCCTTGTTTAATGTAT+TGG + Chr7:93763165-93763184 MsG0780041673.01.T01:intron 30.0%
!!! ACCGAGTTAATGTCATTTTA+AGG + Chr7:93762874-93762893 MsG0780041673.01.T01:intron 30.0%
!!! CAGTGTTTTTTAGAAGAAGA+AGG - Chr7:93758306-93758325 None:intergenic 30.0%
!!! GGATCATTTTAAGGTAAAGT+AGG + Chr7:93759680-93759699 MsG0780041673.01.T01:intron 30.0%
!!! GGCATCATGCTTTTTATTTT+GGG + Chr7:93763252-93763271 MsG0780041673.01.T01:CDS 30.0%
!!! TTTTTTAGAAGAAGAAGGGA+GGG - Chr7:93758301-93758320 None:intergenic 30.0%
AAAATGATGTGCGCATCAAT+TGG + Chr7:93760746-93760765 MsG0780041673.01.T01:CDS 35.0%
AAACAGCCAATTATACCTTG+GGG + Chr7:93760244-93760263 MsG0780041673.01.T01:intron 35.0%
AAAGAAGGAAGCTGAGATTA+AGG + Chr7:93758581-93758600 MsG0780041673.01.T01:intron 35.0%
AACTACCACACATAACCTTA+AGG + Chr7:93759334-93759353 MsG0780041673.01.T01:intron 35.0%
AAGAAGGAAGCTGAGATTAA+GGG + Chr7:93758582-93758601 MsG0780041673.01.T01:intron 35.0%
AAGCAATAACATGCCAAGTT+TGG - Chr7:93761758-93761777 None:intergenic 35.0%
AAGCCTATAAACGAAAGCAA+AGG - Chr7:93760918-93760937 None:intergenic 35.0%
AATAGCAGGGACTATATTGA+TGG + Chr7:93758808-93758827 MsG0780041673.01.T01:CDS 35.0%
ACAAACAGCCAATTATACCT+TGG + Chr7:93760242-93760261 MsG0780041673.01.T01:intron 35.0%
ACAACTCACATGGTAAAAGT+TGG + Chr7:93759193-93759212 MsG0780041673.01.T01:intron 35.0%
ACCATGTGAGTTGTACTTAA+GGG - Chr7:93759187-93759206 None:intergenic 35.0%
AGTCTCTACATCTTAATAGC+AGG + Chr7:93758794-93758813 MsG0780041673.01.T01:intron 35.0%
ATGTTAGGGTGAAATATTGG+GGG - Chr7:93760146-93760165 None:intergenic 35.0%
ATTTGAGTAGCTACCTCATA+AGG - Chr7:93758452-93758471 None:intergenic 35.0%
CAAACAGCCAATTATACCTT+GGG + Chr7:93760243-93760262 MsG0780041673.01.T01:intron 35.0%
CAACCAAGAACAATATACAC+TGG - Chr7:93763076-93763095 None:intergenic 35.0%
CAACCGTAGAGTAATCTTAT+TGG + Chr7:93762752-93762771 MsG0780041673.01.T01:intron 35.0%
CAATCGCAGATTGCAAAAAA+TGG - Chr7:93762555-93762574 None:intergenic 35.0%
CACAATTCAAAACTGTGTCT+TGG + Chr7:93762296-93762315 MsG0780041673.01.T01:intron 35.0%
CAGTGTATATTGTTCTTGGT+TGG + Chr7:93763074-93763093 MsG0780041673.01.T01:intron 35.0%
CATTTAAATGGCAACCAAAC+AGG - Chr7:93762355-93762374 None:intergenic 35.0%
CCAAAAGTCCACAAACTTTA+TGG + Chr7:93760376-93760395 MsG0780041673.01.T01:intron 35.0%
GATCGTGTCAATTTCTCAAT+AGG - Chr7:93758542-93758561 None:intergenic 35.0%
GATGAAATTTGACAGTGGAA+AGG - Chr7:93760598-93760617 None:intergenic 35.0%
GGACCAATAAGATTACTCTA+CGG - Chr7:93762758-93762777 None:intergenic 35.0%
GGCATATGACAAAGTTATGA+TGG + Chr7:93759624-93759643 MsG0780041673.01.T01:intron 35.0%
GTCCAAAAGTTGTCATAAAG+TGG + Chr7:93761530-93761549 MsG0780041673.01.T01:intron 35.0%
GTCTCTACATCTTAATAGCA+GGG + Chr7:93758795-93758814 MsG0780041673.01.T01:intron 35.0%
TAATGTTGGATACAGGAAGA+TGG + Chr7:93761086-93761105 MsG0780041673.01.T01:intron 35.0%
TACCATGTGAGTTGTACTTA+AGG - Chr7:93759188-93759207 None:intergenic 35.0%
TAGCCTTTGCTTTCGTTTAT+AGG + Chr7:93760912-93760931 MsG0780041673.01.T01:intron 35.0%
TAGGACAACGAGGATTAAAA+TGG - Chr7:93762245-93762264 None:intergenic 35.0%
TAGTCAAATAGCAGCTATAG+TGG + Chr7:93762412-93762431 MsG0780041673.01.T01:intron 35.0%
TATGACAAGCATAACAAACC+TGG - Chr7:93760271-93760290 None:intergenic 35.0%
TCAGTTGAGTAATCGGAAAA+GGG + Chr7:93759648-93759667 MsG0780041673.01.T01:intron 35.0%
TCTCTGATATCCCAGTTTAT+GGG + Chr7:93761236-93761255 MsG0780041673.01.T01:intron 35.0%
TGTAAAGACTAGAGACCTTA+AGG - Chr7:93759410-93759429 None:intergenic 35.0%
TTAAGGTTATGTGTGGTAGT+TGG - Chr7:93759335-93759354 None:intergenic 35.0%
TTCTCTGATATCCCAGTTTA+TGG + Chr7:93761235-93761254 MsG0780041673.01.T01:intron 35.0%
TTGTACTTCGATGCAATTTC+AGG + Chr7:93760707-93760726 MsG0780041673.01.T01:intron 35.0%
TTGTAGAAAGTCACTTGGTT+TGG - Chr7:93759471-93759490 None:intergenic 35.0%
TTGTATACGAAGAATTTGGG+AGG + Chr7:93759930-93759949 MsG0780041673.01.T01:intron 35.0%
! AAAGTTTGTGGACTTTTGGA+GGG - Chr7:93760375-93760394 None:intergenic 35.0%
! AAATAGGGTATGTTTGGGTT+TGG + Chr7:93759022-93759041 MsG0780041673.01.T01:intron 35.0%
! ACTTGGCATGTTATTGCTTT+TGG + Chr7:93761759-93761778 MsG0780041673.01.T01:intron 35.0%
! CCATAAAGTTTGTGGACTTT+TGG - Chr7:93760379-93760398 None:intergenic 35.0%
! GAAGAAGAAGCAGATGATTT+TGG - Chr7:93758386-93758405 None:intergenic 35.0%
! GACATTAACTCGGTTTTTGA+AGG - Chr7:93762868-93762887 None:intergenic 35.0%
! GGCTCTATTCTTTTCTTCTA+AGG + Chr7:93759355-93759374 MsG0780041673.01.T01:intron 35.0%
! TAAAGTTTGTGGACTTTTGG+AGG - Chr7:93760376-93760395 None:intergenic 35.0%
! TGATGATTCATCGGATCTTT+TGG + Chr7:93761195-93761214 MsG0780041673.01.T01:intron 35.0%
! TGGTTGGTTGACTTAAATCA+TGG + Chr7:93763090-93763109 MsG0780041673.01.T01:intron 35.0%
! TGTTCCTTTTTCTCTGTGAA+CGG + Chr7:93763501-93763520 MsG0780041673.01.T01:intron 35.0%
! TTCCTTTTCCTCTATTGTGA+CGG + Chr7:93763348-93763367 MsG0780041673.01.T01:intron 35.0%
! TTTAGACTTTTGTACTGTGC+TGG + Chr7:93761714-93761733 MsG0780041673.01.T01:intron 35.0%
!! CGGCATCATGCTTTTTATTT+TGG + Chr7:93763251-93763270 MsG0780041673.01.T01:CDS 35.0%
!!! ACTGGTTTGGTTCAATTTTC+AGG + Chr7:93758333-93758352 MsG0780041673.01.T01:intron 35.0%
!!! GTTTTTTAGAAGAAGAAGGG+AGG - Chr7:93758302-93758321 None:intergenic 35.0%
!!! TGACATGTTAGTTTTGTTGC+TGG + Chr7:93760296-93760315 MsG0780041673.01.T01:intron 35.0%
!!! TTTCTGTGTACATTTTTGGC+AGG + Chr7:93762006-93762025 MsG0780041673.01.T01:intron 35.0%
AAAGAACTCCGTCACAATAG+AGG - Chr7:93763359-93763378 None:intergenic 40.0%
AACTCCGTTCACAGAGAAAA+AGG - Chr7:93763508-93763527 None:intergenic 40.0%
ACCTGAGAGAGGTTGAAAAT+TGG - Chr7:93758264-93758283 None:intergenic 40.0%
ACTAAATCGCGGAAATATGG+CGG - Chr7:93762464-93762483 None:intergenic 40.0%
ACTCACATGGTAAAAGTTGG+AGG + Chr7:93759196-93759215 MsG0780041673.01.T01:intron 40.0%
AGAGACCTTAAGGCTATGTT+TGG - Chr7:93759400-93759419 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG + Chr7:93761473-93761492 MsG0780041673.01.T01:intron 40.0%
AGCAAAGGCTAAAAACTGCA+AGG - Chr7:93760903-93760922 None:intergenic 40.0%
AGGGACAATTGAACTGAATC+GGG + Chr7:93759216-93759235 MsG0780041673.01.T01:intron 40.0%
ATTACAGAGGCCCATAAACT+GGG - Chr7:93761249-93761268 None:intergenic 40.0%
ATTGCAAAGGACACATTGAC+AGG - Chr7:93762702-93762721 None:intergenic 40.0%
CAGCTATACATCCAAAACCA+AGG - Chr7:93761164-93761183 None:intergenic 40.0%
CCTGAGAGAGGTTGAAAATT+GGG - Chr7:93758263-93758282 None:intergenic 40.0%
CTCACATGGTAAAAGTTGGA+GGG + Chr7:93759197-93759216 MsG0780041673.01.T01:intron 40.0%
CTCAGTTGAGTAATCGGAAA+AGG + Chr7:93759647-93759666 MsG0780041673.01.T01:intron 40.0%
GAAAAAGGAACACAGTACTG+CGG - Chr7:93763493-93763512 None:intergenic 40.0%
GAAAAATACACTGCAGGACA+TGG - Chr7:93762162-93762181 None:intergenic 40.0%
GAGACCTTAAGGCTATGTTT+GGG - Chr7:93759399-93759418 None:intergenic 40.0%
GAGAGGTTGAAAATTGGGAA+CGG - Chr7:93758258-93758277 None:intergenic 40.0%
GAGGGACAATTGAACTGAAT+CGG + Chr7:93759215-93759234 MsG0780041673.01.T01:intron 40.0%
GCAAAAAATGGCAGTTGACA+AGG - Chr7:93762543-93762562 None:intergenic 40.0%
GCTATCCTAGTGCAAAAGTA+TGG - Chr7:93762380-93762399 None:intergenic 40.0%
GGTTTCCCAAGAAAACATCA+TGG + Chr7:93758354-93758373 MsG0780041673.01.T01:intron 40.0%
GGTTTCTACGTCTTCAAGAA+AGG - Chr7:93763299-93763318 None:intergenic 40.0%
GTGAAATATTGGGGGGATAT+AGG - Chr7:93760138-93760157 None:intergenic 40.0%
GTTATGTGTGGTAGTTGGTT+TGG - Chr7:93759330-93759349 None:intergenic 40.0%
TAACACATGGAAAGCCTGTT+TGG + Chr7:93762338-93762357 MsG0780041673.01.T01:intron 40.0%
TAAGGATTGAAGTCACCGTT+AGG - Chr7:93758434-93758453 None:intergenic 40.0%
TAGAGCCTTAAGGTTATGTG+TGG - Chr7:93759342-93759361 None:intergenic 40.0%
TCAAACTGGTAACATGACAC+TGG - Chr7:93763007-93763026 None:intergenic 40.0%
TCCAAGTGGCTGATAAAGAA+TGG - Chr7:93760673-93760692 None:intergenic 40.0%
TCCCTTAAGTACAACTCACA+TGG + Chr7:93759183-93759202 MsG0780041673.01.T01:intron 40.0%
TGATGGCTCAGTTGAGTAAT+CGG + Chr7:93759641-93759660 MsG0780041673.01.T01:intron 40.0%
TGTGTGCAATTTCAATGGAC+AGG - Chr7:93759720-93759739 None:intergenic 40.0%
TGTTAGGGTGAAATATTGGG+GGG - Chr7:93760145-93760164 None:intergenic 40.0%
TTAATCCTCGTTGTCCTATG+CGG + Chr7:93762247-93762266 MsG0780041673.01.T01:intron 40.0%
TTAGCAACTGTGCATCAAAC+TGG - Chr7:93763021-93763040 None:intergenic 40.0%
! ACACTGCTTTCTTACTGGTT+TGG + Chr7:93758320-93758339 MsG0780041673.01.T01:intron 40.0%
! AGCGGCATTTTTCGTTTCAA+TGG - Chr7:93759296-93759315 None:intergenic 40.0%
! ATGTGCCATACTTTTGCACT+AGG + Chr7:93762372-93762391 MsG0780041673.01.T01:intron 40.0%
! GATGTATAGCTGTTTCACCT+TGG + Chr7:93761172-93761191 MsG0780041673.01.T01:intron 40.0%
!! AAGTTTGTGGACTTTTGGAG+GGG - Chr7:93760374-93760393 None:intergenic 40.0%
!! ACATACTAAGTGCTGAGAAG+TGG - Chr7:93759265-93759284 None:intergenic 40.0%
!! ATCATTTCTCTTGGTGGACT+TGG + Chr7:93761563-93761582 MsG0780041673.01.T01:intron 40.0%
!! GTTGATAATCACCGCATCAT+CGG + Chr7:93763231-93763250 MsG0780041673.01.T01:CDS 40.0%
!! TCACCTTGGTGATGATTCAT+CGG + Chr7:93761186-93761205 MsG0780041673.01.T01:intron 40.0%
!! TTTTGGAGGGGGAAATAACA+TGG - Chr7:93760362-93760381 None:intergenic 40.0%
AAAGCACAGGCACTAACTAC+AGG + Chr7:93762645-93762664 MsG0780041673.01.T01:intron 45.0%
AAAGCATGATGCCGATGATG+CGG - Chr7:93763245-93763264 None:intergenic 45.0%
AATCTCAACTCTTCCCGCAT+AGG - Chr7:93762264-93762283 None:intergenic 45.0%
AATTTGTGACGTCATGCTGC+GGG + Chr7:93758931-93758950 MsG0780041673.01.T01:intron 45.0%
AGGAAGATGGTGAAGATCCA+GGG + Chr7:93761099-93761118 MsG0780041673.01.T01:intron 45.0%
ATTGAACTGAATCGGGACGT+AGG + Chr7:93759223-93759242 MsG0780041673.01.T01:intron 45.0%
CAATTTGTGACGTCATGCTG+CGG + Chr7:93758930-93758949 MsG0780041673.01.T01:intron 45.0%
CCTTAAGGCTATGTTTGGGA+AGG - Chr7:93759395-93759414 None:intergenic 45.0%
CGGTGACTTCAATCCTTATG+AGG + Chr7:93758436-93758455 MsG0780041673.01.T01:intron 45.0%
CTCCGTCACAATAGAGGAAA+AGG - Chr7:93763353-93763372 None:intergenic 45.0%
CTGCTTAGAGAAGATCACAG+TGG + Chr7:93760458-93760477 MsG0780041673.01.T01:intron 45.0%
GAACATAGTTGAGTCTGCAG+TGG + Chr7:93762045-93762064 MsG0780041673.01.T01:intron 45.0%
GAATGTTGATCCAGCTCGAA+AGG + Chr7:93759603-93759622 MsG0780041673.01.T01:intron 45.0%
GATCCGATGAATCATCACCA+AGG - Chr7:93761192-93761211 None:intergenic 45.0%
GATGCACAGTTGCTAACTCT+TGG + Chr7:93763025-93763044 MsG0780041673.01.T01:intron 45.0%
GATTACAGAGGCCCATAAAC+TGG - Chr7:93761250-93761269 None:intergenic 45.0%
GCCATTCTTTATCAGCCACT+TGG + Chr7:93760669-93760688 MsG0780041673.01.T01:intron 45.0%
GCTATAACACTGTAGCGTAG+TGG + Chr7:93762514-93762533 MsG0780041673.01.T01:intron 45.0%
GCTGAGAAGTGGATAATTGC+AGG - Chr7:93759254-93759273 None:intergenic 45.0%
GGAAAAGGAACACAGTACTG+CGG - Chr7:93763338-93763357 None:intergenic 45.0%
GGATCAATAGATGCGGTGAT+CGG + Chr7:93762928-93762947 MsG0780041673.01.T01:intron 45.0%
TAATCCTCGTTGTCCTATGC+GGG + Chr7:93762248-93762267 MsG0780041673.01.T01:intron 45.0%
TGGGATTGTAGGACCAAACT+TGG + Chr7:93761742-93761761 MsG0780041673.01.T01:intron 45.0%
TTGTACTGTGCTGGACTTCT+GGG + Chr7:93761723-93761742 MsG0780041673.01.T01:intron 45.0%
TTGTCATATGCCTTTCGAGC+TGG - Chr7:93759616-93759635 None:intergenic 45.0%
TTGTCTTTCTGCAGACAGCT+TGG + Chr7:93760847-93760866 MsG0780041673.01.T01:intron 45.0%
TTTGTACTGTGCTGGACTTC+TGG + Chr7:93761722-93761741 MsG0780041673.01.T01:intron 45.0%
! AGGGTATGTTTGGGTTTGGA+GGG + Chr7:93759026-93759045 MsG0780041673.01.T01:intron 45.0%
! ATCGGAAAAGGGTGTGACTT+TGG + Chr7:93759659-93759678 MsG0780041673.01.T01:intron 45.0%
! CCCAATTTTCAACCTCTCTC+AGG + Chr7:93758260-93758279 MsG0780041673.01.T01:CDS 45.0%
! CCTTCCCAAACATAGCCTTA+AGG + Chr7:93759392-93759411 MsG0780041673.01.T01:intron 45.0%
! GGAGCTTTTCGGAGATTCAA+AGG - Chr7:93760957-93760976 None:intergenic 45.0%
! TAGGGTATGTTTGGGTTTGG+AGG + Chr7:93759025-93759044 MsG0780041673.01.T01:intron 45.0%
! TGGTTTGGAGTCACTTGGTT+TGG - Chr7:93759456-93759475 None:intergenic 45.0%
!! AGGAACAAGAAGTGTTGGAG+TGG + Chr7:93758077-93758096 MsG0780041673.01.T01:five_prime_UTR 45.0%
!! AGTCACTTGGTTTGGTCTAG+AGG - Chr7:93759448-93759467 None:intergenic 45.0%
!! AGTTTGTGGACTTTTGGAGG+GGG - Chr7:93760373-93760392 None:intergenic 45.0%
!! ATGTGTGGTAGTTGGTTTGG+AGG - Chr7:93759327-93759346 None:intergenic 45.0%
!! GCAGGAAGCACTAATCCTAA+CGG + Chr7:93758416-93758435 MsG0780041673.01.T01:intron 45.0%
!! GGAACAAGAAGTGTTGGAGT+GGG + Chr7:93758078-93758097 MsG0780041673.01.T01:five_prime_UTR 45.0%
!! GTCACTTGGTTTGGTCTAGA+GGG - Chr7:93759447-93759466 None:intergenic 45.0%
!! TCACTTGGTTTGGAGTCACT+TGG - Chr7:93759461-93759480 None:intergenic 45.0%
!! TGTGTGGTAGTTGGTTTGGA+GGG - Chr7:93759326-93759345 None:intergenic 45.0%
!!! TTGATTTTATTTAATTATTT+TGG + Chr7:93760805-93760824 MsG0780041673.01.T01:intron 5.0%
CAGGAAGATGGTGAAGATCC+AGG + Chr7:93761098-93761117 MsG0780041673.01.T01:intron 50.0%
CATAACAAACCTGGTCCCCA+AGG - Chr7:93760262-93760281 None:intergenic 50.0%
CCAATTATACCTTGGGGACC+AGG + Chr7:93760250-93760269 MsG0780041673.01.T01:intron 50.0%
CCTGGTCCCCAAGGTATAAT+TGG - Chr7:93760253-93760272 None:intergenic 50.0%
GAGTGAGTGTTACCTGAGAG+AGG - Chr7:93758275-93758294 None:intergenic 50.0%
TCTTCTTCTGCATCTGCTGC+AGG + Chr7:93758398-93758417 MsG0780041673.01.T01:intron 50.0%
TGCGGTCATCACAACTTGAC+TGG - Chr7:93763320-93763339 None:intergenic 50.0%
!! GTGTGGTAGTTGGTTTGGAG+GGG - Chr7:93759325-93759344 None:intergenic 50.0%
!! TGCTGGACTTCTGGGATTGT+AGG + Chr7:93761731-93761750 MsG0780041673.01.T01:intron 50.0%
!! TGTGGTAGTTGGTTTGGAGG+GGG - Chr7:93759324-93759343 None:intergenic 50.0%
CCAGGGAGAAGACTGCGTAT+GGG + Chr7:93761116-93761135 MsG0780041673.01.T01:CDS 55.0%
CGTATGGGAAGAGACTGCTC+CGG + Chr7:93761131-93761150 MsG0780041673.01.T01:CDS 55.0%
TCCAGGGAGAAGACTGCGTA+TGG + Chr7:93761115-93761134 MsG0780041673.01.T01:CDS 55.0%
TCTTCCCGCATAGGACAACG+AGG - Chr7:93762255-93762274 None:intergenic 55.0%
!! GTGGTAGTTGGTTTGGAGGG+GGG - Chr7:93759323-93759342 None:intergenic 55.0%
!! TAGTTGGTTTGGAGGGGGGA+GGG - Chr7:93759319-93759338 None:intergenic 55.0%
CCAAAACCAAGGCCAGCGAC+CGG - Chr7:93761153-93761172 None:intergenic 60.0%
CCCATACGCAGTCTTCTCCC+TGG - Chr7:93761119-93761138 None:intergenic 60.0%
!! GTAGTTGGTTTGGAGGGGGG+AGG - Chr7:93759320-93759339 None:intergenic 60.0%
GAAGAGACTGCTCCGGTCGC+TGG + Chr7:93761138-93761157 MsG0780041673.01.T01:CDS 65.0%
!!! CCGGTCGCTGGCCTTGGTTT+TGG + Chr7:93761150-93761169 MsG0780041673.01.T01:intron 65.0%
GGTTTGGAGGGGGGAGGGAG+CGG - Chr7:93759314-93759333 None:intergenic 70.0%
! ACTGCTCCGGTCGCTGGCCT+TGG + Chr7:93761144-93761163 MsG0780041673.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 93758077 93763688 93758077 ID=MsG0780041673.01;Name=MsG0780041673.01
Chr7 mRNA 93758077 93763688 93758077 ID=MsG0780041673.01.T01;Parent=MsG0780041673.01;Name=MsG0780041673.01.T01;_AED=0.51;_eAED=0.51;_QI=97|0.2|0.66|0.83|0|0|6|231|128
Chr7 exon 93758077 93758281 93758077 ID=MsG0780041673.01.T01:exon:22225;Parent=MsG0780041673.01.T01
Chr7 exon 93758796 93758875 93758796 ID=MsG0780041673.01.T01:exon:22226;Parent=MsG0780041673.01.T01
Chr7 exon 93760729 93760785 93760729 ID=MsG0780041673.01.T01:exon:22227;Parent=MsG0780041673.01.T01
Chr7 exon 93761101 93761165 93761101 ID=MsG0780041673.01.T01:exon:22228;Parent=MsG0780041673.01.T01
Chr7 exon 93763229 93763363 93763229 ID=MsG0780041673.01.T01:exon:22229;Parent=MsG0780041673.01.T01
Chr7 exon 93763516 93763688 93763516 ID=MsG0780041673.01.T01:exon:22230;Parent=MsG0780041673.01.T01
Chr7 five_prime_UTR 93758077 93758173 93758077 ID=MsG0780041673.01.T01:five_prime_utr;Parent=MsG0780041673.01.T01
Chr7 CDS 93758174 93758281 93758174 ID=MsG0780041673.01.T01:cds;Parent=MsG0780041673.01.T01
Chr7 CDS 93758796 93758875 93758796 ID=MsG0780041673.01.T01:cds;Parent=MsG0780041673.01.T01
Chr7 CDS 93760729 93760785 93760729 ID=MsG0780041673.01.T01:cds;Parent=MsG0780041673.01.T01
Chr7 CDS 93761101 93761165 93761101 ID=MsG0780041673.01.T01:cds;Parent=MsG0780041673.01.T01
Chr7 CDS 93763229 93763305 93763229 ID=MsG0780041673.01.T01:cds;Parent=MsG0780041673.01.T01
Chr7 three_prime_UTR 93763306 93763363 93763306 ID=MsG0780041673.01.T01:three_prime_utr;Parent=MsG0780041673.01.T01
Chr7 three_prime_UTR 93763516 93763688 93763516 ID=MsG0780041673.01.T01:three_prime_utr;Parent=MsG0780041673.01.T01
Gene Sequence

>MsG0780041673.01.T01

ATGGCTTTGACAATCTCAAACATACTTCACTTCCCTAAATTCAACAACAACAACAACAACACTAATTCATCACAACTATTTCCGTTCCCAATTTTCAACCTCTCTCAGTCTCTACATCTTAATAGCAGGGACTATATTGATGGTTTATCATCATCATGTGAGAAGAGACAAAAACAAAATGAAAAAGGGTTTGCTAAATCAAGTGAAAATGATGTGCGCATCAATTGGCAATATCTGCTGTTTTTGAAGATGGTGAAGATCCAGGGAGAAGACTGCGTATGGGAAGAGACTGCTCCGGTCGCTGGCCTTGGAGTTGATAATCACCGCATCATCGGCATCATGCTTTTTATTTTGGGATCTTTTATAGATAATATGGACCTTTCTTGA

Protein sequence

>MsG0780041673.01.T01

MALTISNILHFPKFNNNNNNTNSSQLFPFPIFNLSQSLHLNSRDYIDGLSSSCEKRQKQNEKGFAKSSENDVRINWQYLLFLKMVKIQGEDCVWEETAPVAGLGVDNHRIIGIMLFILGSFIDNMDLS*