Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780040614.01.T01 | XP_003625315.1 | 99.359 | 156 | 1 | 0 | 1 | 156 | 39 | 194 | 3.62E-111 | 323 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780040614.01.T01 | A0A1V1FH01 | 91.667 | 156 | 13 | 0 | 1 | 156 | 33 | 188 | 5.71E-106 | 303 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780040614.01.T01 | G7KWC3 | 99.359 | 156 | 1 | 0 | 1 | 156 | 39 | 194 | 1.73e-111 | 323 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0780040611.01 | MsG0780040614.01 | 0.821743 | 3.433043e-53 | 2.816950e-50 |
PPI
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780040614.01.T01 | MTR_7g093820 | 99.359 | 156 | 1 | 0 | 1 | 156 | 39 | 194 | 4.38e-115 | 323 |
MsG0780040614.01.T01 | MTR_7g093850 | 98.077 | 156 | 3 | 0 | 1 | 156 | 39 | 194 | 1.33e-113 | 320 |
MsG0780040614.01.T01 | MTR_7g093830 | 97.436 | 156 | 4 | 0 | 1 | 156 | 38 | 193 | 1.85e-112 | 317 |
MsG0780040614.01.T01 | MTR_7g093790 | 80.128 | 156 | 31 | 0 | 1 | 156 | 36 | 191 | 1.32e-94 | 272 |
MsG0780040614.01.T01 | MTR_7g093870 | 60.000 | 160 | 58 | 3 | 2 | 156 | 35 | 193 | 2.46e-65 | 199 |
MsG0780040614.01.T01 | MTR_4g013350 | 52.866 | 157 | 72 | 2 | 1 | 156 | 42 | 197 | 2.93e-57 | 177 |
MsG0780040614.01.T01 | MTR_4g013345 | 52.866 | 157 | 72 | 2 | 1 | 156 | 41 | 196 | 5.35e-56 | 174 |
MsG0780040614.01.T01 | MTR_1g054525 | 55.263 | 152 | 65 | 2 | 5 | 156 | 44 | 192 | 1.18e-54 | 171 |
MsG0780040614.01.T01 | MTR_4g013335 | 50.955 | 157 | 73 | 3 | 1 | 156 | 43 | 196 | 2.90e-54 | 170 |
MsG0780040614.01.T01 | MTR_4g013330 | 50.943 | 159 | 74 | 3 | 1 | 156 | 42 | 199 | 9.06e-54 | 169 |
MsG0780040614.01.T01 | MTR_4g013320 | 51.316 | 152 | 73 | 1 | 5 | 156 | 49 | 199 | 1.26e-53 | 168 |
MsG0780040614.01.T01 | MTR_4g013325 | 53.425 | 146 | 67 | 1 | 11 | 156 | 55 | 199 | 3.70e-53 | 167 |
MsG0780040614.01.T01 | MTR_4g073950 | 52.941 | 153 | 70 | 2 | 5 | 156 | 41 | 192 | 2.34e-51 | 162 |
MsG0780040614.01.T01 | MTR_4g013310 | 51.316 | 152 | 71 | 2 | 5 | 156 | 49 | 197 | 3.00e-50 | 160 |
MsG0780040614.01.T01 | MTR_3g105640 | 52.288 | 153 | 70 | 3 | 6 | 156 | 37 | 188 | 8.10e-50 | 158 |
MsG0780040614.01.T01 | MTR_3g105630 | 50.000 | 154 | 73 | 3 | 6 | 156 | 37 | 189 | 3.19e-49 | 157 |
MsG0780040614.01.T01 | MTR_7g070390 | 51.974 | 152 | 71 | 2 | 5 | 156 | 43 | 192 | 2.44e-47 | 152 |
MsG0780040614.01.T01 | MTR_4g013385 | 46.053 | 152 | 80 | 2 | 5 | 156 | 41 | 190 | 1.40e-44 | 145 |
MsG0780040614.01.T01 | MTR_0433s0040 | 46.053 | 152 | 80 | 2 | 5 | 156 | 41 | 190 | 1.40e-44 | 145 |
MsG0780040614.01.T01 | MTR_5g096120 | 49.677 | 155 | 71 | 4 | 7 | 156 | 37 | 189 | 1.81e-44 | 145 |
MsG0780040614.01.T01 | MTR_1g056370 | 48.299 | 147 | 73 | 3 | 10 | 155 | 41 | 185 | 9.19e-43 | 140 |
MsG0780040614.01.T01 | MTR_4g013770 | 42.568 | 148 | 83 | 2 | 10 | 156 | 45 | 191 | 2.67e-41 | 137 |
MsG0780040614.01.T01 | MTR_3g034030 | 46.358 | 151 | 76 | 4 | 7 | 156 | 39 | 185 | 5.14e-40 | 133 |
MsG0780040614.01.T01 | MTR_4g078885 | 45.395 | 152 | 78 | 4 | 6 | 156 | 38 | 185 | 1.96e-39 | 132 |
MsG0780040614.01.T01 | MTR_4g013355 | 40.132 | 152 | 80 | 1 | 5 | 156 | 39 | 179 | 5.15e-36 | 123 |
MsG0780040614.01.T01 | MTR_4g122110 | 40.397 | 151 | 89 | 1 | 6 | 156 | 31 | 180 | 4.48e-30 | 107 |
MsG0780040614.01.T01 | MTR_4g122130 | 40.397 | 151 | 89 | 1 | 6 | 156 | 31 | 180 | 1.05e-29 | 107 |
MsG0780040614.01.T01 | MTR_4g049570 | 32.215 | 149 | 100 | 1 | 3 | 151 | 26 | 173 | 2.95e-21 | 85.1 |
MsG0780040614.01.T01 | MTR_4g049550 | 30.822 | 146 | 100 | 1 | 6 | 151 | 29 | 173 | 2.11e-20 | 83.2 |
MsG0780040614.01.T01 | MTR_1g046800 | 41.053 | 95 | 54 | 2 | 40 | 134 | 133 | 225 | 1.17e-13 | 66.6 |
MsG0780040614.01.T01 | MTR_1g046490 | 38.947 | 95 | 56 | 2 | 40 | 134 | 119 | 211 | 1.17e-13 | 66.2 |
MsG0780040614.01.T01 | MTR_1g046500 | 40.000 | 95 | 55 | 2 | 40 | 134 | 133 | 225 | 1.66e-13 | 66.2 |
MsG0780040614.01.T01 | MTR_1g115510 | 36.154 | 130 | 75 | 5 | 33 | 155 | 225 | 353 | 9.35e-13 | 64.7 |
MsG0780040614.01.T01 | MTR_4g062520 | 37.383 | 107 | 66 | 1 | 33 | 139 | 177 | 282 | 1.56e-12 | 63.9 |
MsG0780040614.01.T01 | MTR_4g062470 | 37.383 | 107 | 66 | 1 | 33 | 139 | 178 | 283 | 1.99e-12 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780040614.01.T01 | AT5G42500 | 53.595 | 153 | 68 | 2 | 3 | 155 | 36 | 185 | 5.13e-54 | 169 |
MsG0780040614.01.T01 | AT5G42510 | 51.634 | 153 | 71 | 2 | 3 | 155 | 33 | 182 | 2.02e-51 | 162 |
MsG0780040614.01.T01 | AT1G65870 | 52.288 | 153 | 72 | 1 | 3 | 155 | 38 | 189 | 2.03e-51 | 162 |
MsG0780040614.01.T01 | AT1G22900 | 51.634 | 153 | 71 | 2 | 3 | 155 | 44 | 193 | 1.11e-49 | 158 |
MsG0780040614.01.T01 | AT1G58170 | 46.452 | 155 | 82 | 1 | 2 | 156 | 32 | 185 | 2.46e-48 | 154 |
MsG0780040614.01.T01 | AT5G49040 | 46.053 | 152 | 81 | 1 | 5 | 156 | 41 | 191 | 2.46e-47 | 152 |
MsG0780040614.01.T01 | AT1G55210 | 46.497 | 157 | 79 | 3 | 1 | 156 | 35 | 187 | 3.34e-47 | 152 |
MsG0780040614.01.T01 | AT1G55210 | 46.497 | 157 | 79 | 3 | 1 | 156 | 35 | 187 | 3.34e-47 | 152 |
MsG0780040614.01.T01 | AT3G13650 | 45.455 | 154 | 80 | 2 | 3 | 156 | 37 | 186 | 4.99e-46 | 149 |
MsG0780040614.01.T01 | AT2G21100 | 48.000 | 150 | 77 | 1 | 6 | 155 | 39 | 187 | 3.27e-43 | 141 |
MsG0780040614.01.T01 | AT2G21100 | 48.000 | 150 | 77 | 1 | 6 | 155 | 39 | 187 | 3.27e-43 | 141 |
MsG0780040614.01.T01 | AT3G13662 | 48.571 | 140 | 68 | 2 | 4 | 143 | 37 | 172 | 4.25e-43 | 140 |
MsG0780040614.01.T01 | AT2G21110 | 44.371 | 151 | 79 | 2 | 10 | 156 | 37 | 186 | 2.30e-42 | 139 |
MsG0780040614.01.T01 | AT4G38700 | 44.304 | 158 | 83 | 3 | 4 | 156 | 33 | 190 | 4.55e-40 | 134 |
MsG0780040614.01.T01 | AT5G49030 | 47.692 | 130 | 67 | 1 | 5 | 134 | 41 | 169 | 1.18e-37 | 136 |
MsG0780040614.01.T01 | AT3G58090 | 46.269 | 134 | 71 | 1 | 22 | 155 | 139 | 271 | 1.15e-34 | 122 |
MsG0780040614.01.T01 | AT3G13660 | 44.538 | 119 | 65 | 1 | 38 | 156 | 8 | 125 | 2.11e-33 | 114 |
MsG0780040614.01.T01 | AT4G23690 | 34.586 | 133 | 75 | 5 | 5 | 131 | 36 | 162 | 1.73e-13 | 65.1 |
MsG0780040614.01.T01 | AT3G24020 | 35.789 | 95 | 59 | 2 | 40 | 134 | 126 | 218 | 8.77e-11 | 58.5 |
Find 41 sgRNAs with CRISPR-Local
Find 47 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAATGGCCATTTCTCTAAC+AGG | 0.363166 | 7:+80007793 | None:intergenic |
ACAAATACCATGCTAGGTTT+TGG | 0.370876 | 7:+80008057 | None:intergenic |
GGAAGCACACTTAGCATATT+AGG | 0.380466 | 7:-80007838 | MsG0780040614.01.T01:CDS |
ATGGCCATTGTTGGTGGGAC+TGG | 0.413384 | 7:-80007781 | MsG0780040614.01.T01:CDS |
TATTCGGTTGATTATACAAA+AGG | 0.426193 | 7:-80007718 | MsG0780040614.01.T01:CDS |
TACTTTCATGACATCGTGTC+GGG | 0.426601 | 7:-80008081 | MsG0780040614.01.T01:CDS |
CGTTCTGGCCCAGCCGTCAA+TGG | 0.431463 | 7:+80007970 | None:intergenic |
AGCCTATCTCCAACAATGTT+GGG | 0.432623 | 7:-80008138 | None:intergenic |
ATGGACGATCCATTGACGGC+TGG | 0.438919 | 7:-80007979 | MsG0780040614.01.T01:CDS |
GAGTGAACCTGTTAGAGAAA+TGG | 0.463422 | 7:-80007800 | MsG0780040614.01.T01:CDS |
ACAAGTTTCGAGTCACGTTC+TGG | 0.465414 | 7:+80007955 | None:intergenic |
TTCTATATCACAAGAGGAGA+TGG | 0.477985 | 7:-80007908 | MsG0780040614.01.T01:CDS |
TGGACGATCCATTGACGGCT+GGG | 0.512893 | 7:-80007978 | MsG0780040614.01.T01:CDS |
TTTCGTACGTGGTTATGCTC+AGG | 0.517603 | 7:-80007749 | MsG0780040614.01.T01:CDS |
ATTCGGGACAGTTGTGGCGA+TGG | 0.519713 | 7:-80007998 | MsG0780040614.01.T01:CDS |
AGAGGAGATGGGACTAATGA+TGG | 0.528699 | 7:-80007896 | MsG0780040614.01.T01:CDS |
TCAGCTACAAATACCATGCT+AGG | 0.528865 | 7:+80008051 | None:intergenic |
TGACTCGAAACTTGTGGGTA+AGG | 0.534298 | 7:-80007947 | MsG0780040614.01.T01:CDS |
GAACGTGACTCGAAACTTGT+GGG | 0.536601 | 7:-80007952 | MsG0780040614.01.T01:CDS |
CTTGCCATTCGGGACAGTTG+TGG | 0.537319 | 7:-80008004 | MsG0780040614.01.T01:CDS |
GGCGATGGACGATCCATTGA+CGG | 0.538554 | 7:-80007983 | MsG0780040614.01.T01:CDS |
GTTAGAGAAATGGCCATTGT+TGG | 0.545345 | 7:-80007790 | MsG0780040614.01.T01:CDS |
AAACTTGTGGGTAAGGCTCA+AGG | 0.545821 | 7:-80007940 | MsG0780040614.01.T01:CDS |
TTACACTTCTATATCACAAG+AGG | 0.558364 | 7:-80007914 | MsG0780040614.01.T01:CDS |
ATGACCATGGCATTCACTGA+TGG | 0.562304 | 7:-80007871 | MsG0780040614.01.T01:CDS |
TTACTTTCATGACATCGTGT+CGG | 0.568079 | 7:-80008082 | MsG0780040614.01.T01:CDS |
AGAGAAATGGCCATTGTTGG+TGG | 0.569066 | 7:-80007787 | MsG0780040614.01.T01:CDS |
AGCTCCAGTCCCACCAACAA+TGG | 0.574074 | 7:+80007777 | None:intergenic |
TCTATATCACAAGAGGAGAT+GGG | 0.592301 | 7:-80007907 | MsG0780040614.01.T01:CDS |
AGAACGTGACTCGAAACTTG+TGG | 0.594960 | 7:-80007953 | MsG0780040614.01.T01:CDS |
GAGAAATGGCCATTGTTGGT+GGG | 0.599344 | 7:-80007786 | MsG0780040614.01.T01:CDS |
CACAACTGTCCCGAATGGCA+AGG | 0.608603 | 7:+80008005 | None:intergenic |
GTCGGGACCAAAACCTAGCA+TGG | 0.611064 | 7:-80008064 | MsG0780040614.01.T01:CDS |
ATCGCCACAACTGTCCCGAA+TGG | 0.611420 | 7:+80008000 | None:intergenic |
ATCTCCATCAGTGAATGCCA+TGG | 0.621162 | 7:+80007867 | None:intergenic |
TGTCATGAAAGTAAAAGTGA+AGG | 0.621515 | 7:+80008091 | None:intergenic |
TACAAAAGGAGATGCCATTG+TGG | 0.627394 | 7:-80007704 | MsG0780040614.01.T01:CDS |
TGTAGCTGAACCCAATGGCA+AGG | 0.648979 | 7:-80008037 | MsG0780040614.01.T01:CDS |
GTATTTGTAGCTGAACCCAA+TGG | 0.653475 | 7:-80008042 | MsG0780040614.01.T01:CDS |
AAATATGTCATACTCCACAA+TGG | 0.693639 | 7:+80007690 | None:intergenic |
ACTAATGATGGTGATGACCA+TGG | 0.702330 | 7:-80007884 | MsG0780040614.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | TATTCGGTTGATTATACAAA+AGG | - | Chr7:80008080-80008099 | MsG0780040614.01.T01:CDS | 25.0% |
AAATATGTCATACTCCACAA+TGG | + | Chr7:80008111-80008130 | None:intergenic | 30.0% | |
TGTCATGAAAGTAAAAGTGA+AGG | + | Chr7:80007710-80007729 | None:intergenic | 30.0% | |
TTACACTTCTATATCACAAG+AGG | - | Chr7:80007884-80007903 | MsG0780040614.01.T01:CDS | 30.0% | |
! | TTCACTGATGGAGATTTTAA+TGG | - | Chr7:80007939-80007958 | MsG0780040614.01.T01:CDS | 30.0% |
GTAAAAAATGCCTTGCCATT+CGG | - | Chr7:80007783-80007802 | MsG0780040614.01.T01:CDS | 35.0% | |
TAAAAAATGCCTTGCCATTC+GGG | - | Chr7:80007784-80007803 | MsG0780040614.01.T01:CDS | 35.0% | |
TCTATATCACAAGAGGAGAT+GGG | - | Chr7:80007891-80007910 | MsG0780040614.01.T01:CDS | 35.0% | |
TTACTTTCATGACATCGTGT+CGG | - | Chr7:80007716-80007735 | MsG0780040614.01.T01:CDS | 35.0% | |
TTCTATATCACAAGAGGAGA+TGG | - | Chr7:80007890-80007909 | MsG0780040614.01.T01:CDS | 35.0% | |
! | ACAAATACCATGCTAGGTTT+TGG | + | Chr7:80007744-80007763 | None:intergenic | 35.0% |
!!! | GCATTTTTTACCTTGCCATT+GGG | + | Chr7:80007774-80007793 | None:intergenic | 35.0% |
!!! | TGCTCAGGCTAAGTTTTATT+CGG | - | Chr7:80008064-80008083 | MsG0780040614.01.T01:CDS | 35.0% |
ACAATGGCCATTTCTCTAAC+AGG | + | Chr7:80008008-80008027 | None:intergenic | 40.0% | |
GAGTGAACCTGTTAGAGAAA+TGG | - | Chr7:80007998-80008017 | MsG0780040614.01.T01:CDS | 40.0% | |
GTATTTGTAGCTGAACCCAA+TGG | - | Chr7:80007756-80007775 | MsG0780040614.01.T01:CDS | 40.0% | |
GTTAGAGAAATGGCCATTGT+TGG | - | Chr7:80008008-80008027 | MsG0780040614.01.T01:CDS | 40.0% | |
TACAAAAGGAGATGCCATTG+TGG | - | Chr7:80008094-80008113 | MsG0780040614.01.T01:CDS | 40.0% | |
TACTTTCATGACATCGTGTC+GGG | - | Chr7:80007717-80007736 | MsG0780040614.01.T01:CDS | 40.0% | |
TCAGCTACAAATACCATGCT+AGG | + | Chr7:80007750-80007769 | None:intergenic | 40.0% | |
! | ACTAATGATGGTGATGACCA+TGG | - | Chr7:80007914-80007933 | MsG0780040614.01.T01:CDS | 40.0% |
! | GGAAGCACACTTAGCATATT+AGG | - | Chr7:80007960-80007979 | MsG0780040614.01.T01:CDS | 40.0% |
!!! | GGCATTTTTTACCTTGCCAT+TGG | + | Chr7:80007775-80007794 | None:intergenic | 40.0% |
AAACTTGTGGGTAAGGCTCA+AGG | - | Chr7:80007858-80007877 | MsG0780040614.01.T01:CDS | 45.0% | |
AGAACGTGACTCGAAACTTG+TGG | - | Chr7:80007845-80007864 | MsG0780040614.01.T01:CDS | 45.0% | |
AGAGAAATGGCCATTGTTGG+TGG | - | Chr7:80008011-80008030 | MsG0780040614.01.T01:CDS | 45.0% | |
AGAGGAGATGGGACTAATGA+TGG | - | Chr7:80007902-80007921 | MsG0780040614.01.T01:CDS | 45.0% | |
ATCTCCATCAGTGAATGCCA+TGG | + | Chr7:80007934-80007953 | None:intergenic | 45.0% | |
ATGACCATGGCATTCACTGA+TGG | - | Chr7:80007927-80007946 | MsG0780040614.01.T01:CDS | 45.0% | |
GAACGTGACTCGAAACTTGT+GGG | - | Chr7:80007846-80007865 | MsG0780040614.01.T01:CDS | 45.0% | |
GAGAAATGGCCATTGTTGGT+GGG | - | Chr7:80008012-80008031 | MsG0780040614.01.T01:CDS | 45.0% | |
TGACTCGAAACTTGTGGGTA+AGG | - | Chr7:80007851-80007870 | MsG0780040614.01.T01:CDS | 45.0% | |
TTTCGTACGTGGTTATGCTC+AGG | - | Chr7:80008049-80008068 | MsG0780040614.01.T01:CDS | 45.0% | |
! | ACAAGTTTCGAGTCACGTTC+TGG | + | Chr7:80007846-80007865 | None:intergenic | 45.0% |
TGTAGCTGAACCCAATGGCA+AGG | - | Chr7:80007761-80007780 | MsG0780040614.01.T01:CDS | 50.0% | |
! | GGAGCTTTTCGTTTCGTACG+TGG | - | Chr7:80008038-80008057 | MsG0780040614.01.T01:CDS | 50.0% |
AGCTCCAGTCCCACCAACAA+TGG | + | Chr7:80008024-80008043 | None:intergenic | 55.0% | |
ATCGCCACAACTGTCCCGAA+TGG | + | Chr7:80007801-80007820 | None:intergenic | 55.0% | |
ATGGACGATCCATTGACGGC+TGG | - | Chr7:80007819-80007838 | MsG0780040614.01.T01:CDS | 55.0% | |
ATTCGGGACAGTTGTGGCGA+TGG | - | Chr7:80007800-80007819 | MsG0780040614.01.T01:CDS | 55.0% | |
CACAACTGTCCCGAATGGCA+AGG | + | Chr7:80007796-80007815 | None:intergenic | 55.0% | |
CTTGCCATTCGGGACAGTTG+TGG | - | Chr7:80007794-80007813 | MsG0780040614.01.T01:CDS | 55.0% | |
GGCGATGGACGATCCATTGA+CGG | - | Chr7:80007815-80007834 | MsG0780040614.01.T01:CDS | 55.0% | |
GTCGGGACCAAAACCTAGCA+TGG | - | Chr7:80007734-80007753 | MsG0780040614.01.T01:CDS | 55.0% | |
TGGACGATCCATTGACGGCT+GGG | - | Chr7:80007820-80007839 | MsG0780040614.01.T01:CDS | 55.0% | |
! | ATGGCCATTGTTGGTGGGAC+TGG | - | Chr7:80008017-80008036 | MsG0780040614.01.T01:CDS | 55.0% |
CGTTCTGGCCCAGCCGTCAA+TGG | + | Chr7:80007831-80007850 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 80007675 | 80008145 | 80007675 | ID=MsG0780040614.01;Name=MsG0780040614.01 |
Chr7 | mRNA | 80007675 | 80008145 | 80007675 | ID=MsG0780040614.01.T01;Parent=MsG0780040614.01;Name=MsG0780040614.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|156 |
Chr7 | exon | 80007675 | 80008145 | 80007675 | ID=MsG0780040614.01.T01:exon:16390;Parent=MsG0780040614.01.T01 |
Chr7 | CDS | 80007675 | 80008145 | 80007675 | ID=MsG0780040614.01.T01:cds;Parent=MsG0780040614.01.T01 |
Gene Sequence |
Protein sequence |