Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040615.01.T01 | XP_003625319.1 | 97.248 | 218 | 6 | 0 | 1 | 218 | 1 | 218 | 2.90E-153 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040615.01.T01 | A0A1V1FH01 | 56.701 | 194 | 77 | 4 | 1 | 193 | 1 | 188 | 2.90E-73 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040615.01.T01 | G7KWC7 | 97.248 | 218 | 6 | 0 | 1 | 218 | 1 | 218 | 1.39e-153 | 434 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000399.01 | MsG0780040615.01 | 0.830078 | 3.595510e-55 | 3.748691e-52 |
| MsG0180001084.01 | MsG0780040615.01 | 0.831781 | 1.373862e-55 | 1.506388e-52 |
| MsG0180001515.01 | MsG0780040615.01 | 0.811943 | 5.435049e-51 | 3.409708e-48 |
| MsG0180003237.01 | MsG0780040615.01 | 0.853092 | 3.002981e-61 | 6.413024e-58 |
| MsG0180003320.01 | MsG0780040615.01 | 0.808717 | 2.700587e-50 | 1.555306e-47 |
| MsG0180003372.01 | MsG0780040615.01 | 0.804426 | 2.172773e-49 | 1.119890e-46 |
| MsG0180004059.01 | MsG0780040615.01 | 0.818623 | 1.779708e-52 | 1.338921e-49 |
| MsG0180004424.01 | MsG0780040615.01 | 0.885573 | 7.235979e-72 | 4.992862e-68 |
| MsG0180004937.01 | MsG0780040615.01 | -0.800342 | 1.507682e-48 | 7.003263e-46 |
| MsG0780040615.01 | MsG0780040991.01 | 0.814506 | 1.487805e-51 | 1.000217e-48 |
| MsG0780040615.01 | MsG0780041447.01 | 0.816014 | 6.877624e-52 | 4.817363e-49 |
| MsG0780040615.01 | MsG0880043997.01 | 0.828392 | 9.220826e-55 | 9.153323e-52 |
| MsG0780040615.01 | MsG0880044026.01 | 0.807617 | 4.630399e-50 | 2.591044e-47 |
| MsG0780040615.01 | MsG0880045851.01 | 0.819731 | 9.956411e-53 | 7.724759e-50 |
| MsG0780040615.01 | MsG0880047460.01 | 0.819246 | 1.284559e-52 | 9.832358e-50 |
| MsG0780040615.01 | MsG0880047542.01 | 0.826778 | 2.251261e-54 | 2.131727e-51 |
| MsG0380011635.01 | MsG0780040615.01 | 0.813700 | 2.241443e-51 | 1.474220e-48 |
| MsG0380012654.01 | MsG0780040615.01 | 0.811918 | 5.504919e-51 | 3.451025e-48 |
| MsG0380013213.01 | MsG0780040615.01 | 0.800030 | 1.745092e-48 | 8.041710e-46 |
| MsG0680031009.01 | MsG0780040615.01 | 0.852766 | 3.722508e-61 | 7.861083e-58 |
| MsG0680031200.01 | MsG0780040615.01 | 0.809055 | 2.285533e-50 | 1.328252e-47 |
| MsG0680032026.01 | MsG0780040615.01 | 0.847179 | 1.361835e-59 | 2.400655e-56 |
| MsG0680032343.01 | MsG0780040615.01 | 0.807755 | 4.328425e-50 | 2.430861e-47 |
| MsG0680032461.01 | MsG0780040615.01 | 0.835528 | 1.592253e-56 | 1.952248e-53 |
| MsG0680033014.01 | MsG0780040615.01 | 0.815484 | 9.027845e-52 | 6.232612e-49 |
| MsG0680034255.01 | MsG0780040615.01 | 0.805918 | 1.058563e-49 | 5.669907e-47 |
| MsG0680034974.01 | MsG0780040615.01 | 0.836174 | 1.091851e-56 | 1.365279e-53 |
| MsG0480018521.01 | MsG0780040615.01 | 0.899310 | 2.248428e-77 | 2.764842e-73 |
| MsG0480018522.01 | MsG0780040615.01 | 0.904911 | 7.478703e-80 | 1.181582e-75 |
| MsG0480018621.01 | MsG0780040615.01 | 0.809483 | 1.850552e-50 | 1.087791e-47 |
| MsG0480018692.01 | MsG0780040615.01 | 0.808933 | 2.427467e-50 | 1.406061e-47 |
| MsG0480018693.01 | MsG0780040615.01 | 0.854010 | 1.636223e-61 | 3.603334e-58 |
| MsG0480018697.01 | MsG0780040615.01 | 0.824179 | 9.285474e-54 | 8.164160e-51 |
| MsG0480019346.01 | MsG0780040615.01 | 0.800614 | 1.327116e-48 | 6.206994e-46 |
| MsG0480019348.01 | MsG0780040615.01 | 0.818224 | 2.191728e-52 | 1.630846e-49 |
| MsG0480020285.01 | MsG0780040615.01 | 0.821809 | 3.313286e-53 | 2.724044e-50 |
| MsG0480020814.01 | MsG0780040615.01 | 0.808676 | 2.754952e-50 | 1.584986e-47 |
| MsG0480022300.01 | MsG0780040615.01 | -0.817779 | 2.762040e-52 | 2.030430e-49 |
| MsG0480022309.01 | MsG0780040615.01 | 0.841791 | 3.836256e-58 | 5.698874e-55 |
| MsG0480022833.01 | MsG0780040615.01 | 0.826926 | 2.074701e-54 | 1.973318e-51 |
| MsG0480023102.01 | MsG0780040615.01 | 0.808503 | 3.000117e-50 | 1.718331e-47 |
| MsG0480023327.01 | MsG0780040615.01 | 0.812752 | 3.618990e-51 | 2.320093e-48 |
| MsG0580024086.01 | MsG0780040615.01 | 0.862644 | 4.380411e-64 | 1.291930e-60 |
| MsG0580024202.01 | MsG0780040615.01 | 0.900797 | 5.111327e-78 | 6.710739e-74 |
| MsG0580024207.01 | MsG0780040615.01 | 0.873098 | 1.912703e-67 | 8.198769e-64 |
| MsG0580024217.01 | MsG0780040615.01 | 0.855051 | 8.174913e-62 | 1.863161e-58 |
| MsG0580024219.01 | MsG0780040615.01 | 0.826652 | 2.411624e-54 | 2.275477e-51 |
| MsG0580024408.01 | MsG0780040615.01 | 0.819176 | 1.332332e-52 | 1.017818e-49 |
| MsG0580024986.01 | MsG0780040615.01 | 0.855571 | 5.771420e-62 | 1.338312e-58 |
| MsG0580024990.01 | MsG0780040615.01 | 0.854666 | 1.057604e-61 | 2.379771e-58 |
| MsG0580025961.01 | MsG0780040615.01 | 0.805158 | 1.527751e-49 | 8.024756e-47 |
| MsG0580025965.01 | MsG0780040615.01 | 0.932774 | 5.140156e-95 | 3.513039e-90 |
| MsG0380015659.01 | MsG0780040615.01 | 0.803391 | 3.565494e-49 | 1.789530e-46 |
| MsG0380016086.01 | MsG0780040615.01 | 0.801962 | 7.029666e-49 | 3.401836e-46 |
| MsG0380018070.01 | MsG0780040615.01 | 0.806968 | 6.355670e-50 | 3.497076e-47 |
| MsG0480018409.01 | MsG0780040615.01 | 0.804814 | 1.802865e-49 | 9.386913e-47 |
| MsG0480018439.01 | MsG0780040615.01 | 0.835347 | 1.768915e-56 | 2.157456e-53 |
| MsG0580026521.01 | MsG0780040615.01 | 0.809129 | 2.203727e-50 | 1.283297e-47 |
| MsG0580026925.01 | MsG0780040615.01 | 0.837414 | 5.273079e-57 | 6.844065e-54 |
| MsG0580027751.01 | MsG0780040615.01 | 0.827898 | 1.213328e-54 | 1.187123e-51 |
| MsG0580027752.01 | MsG0780040615.01 | 0.807124 | 5.892329e-50 | 3.255065e-47 |
| MsG0580027753.01 | MsG0780040615.01 | 0.818856 | 1.575272e-52 | 1.192932e-49 |
| MsG0580029291.01 | MsG0780040615.01 | 0.830422 | 2.963463e-55 | 3.120703e-52 |
| MsG0580030145.01 | MsG0780040615.01 | 0.806313 | 8.739548e-50 | 4.728508e-47 |
| MsG0680030380.01 | MsG0780040615.01 | 0.803807 | 2.922137e-49 | 1.482424e-46 |
| MsG0680030382.01 | MsG0780040615.01 | 0.802881 | 4.546421e-49 | 2.252320e-46 |
| MsG0280007716.01 | MsG0780040615.01 | 0.800587 | 1.344170e-48 | 6.282494e-46 |
| MsG0280007869.01 | MsG0780040615.01 | 0.824410 | 8.196018e-54 | 7.253199e-51 |
| MsG0280007906.01 | MsG0780040615.01 | 0.831446 | 1.661982e-55 | 1.804040e-52 |
| MsG0280007908.01 | MsG0780040615.01 | 0.882303 | 1.166747e-70 | 7.070847e-67 |
| MsG0280007909.01 | MsG0780040615.01 | 0.821249 | 4.463055e-53 | 3.611835e-50 |
| MsG0280007911.01 | MsG0780040615.01 | 0.809798 | 1.583806e-50 | 9.388447e-48 |
| MsG0280008178.01 | MsG0780040615.01 | 0.802454 | 5.566602e-49 | 2.727971e-46 |
| MsG0280008180.01 | MsG0780040615.01 | 0.802076 | 6.660284e-49 | 3.232556e-46 |
| MsG0280008659.01 | MsG0780040615.01 | 0.806389 | 8.425445e-50 | 4.567208e-47 |
| MsG0280009253.01 | MsG0780040615.01 | 0.821839 | 3.261277e-53 | 2.683572e-50 |
| MsG0780035932.01 | MsG0780040615.01 | 0.836387 | 9.641765e-57 | 1.213236e-53 |
| MsG0780036208.01 | MsG0780040615.01 | 0.810426 | 1.159610e-50 | 6.987456e-48 |
| MsG0780036367.01 | MsG0780040615.01 | 0.808216 | 3.454352e-50 | 1.963684e-47 |
| MsG0780036370.01 | MsG0780040615.01 | 0.800916 | 1.151453e-48 | 5.427114e-46 |
| MsG0780036376.01 | MsG0780040615.01 | 0.839716 | 1.341352e-57 | 1.868167e-54 |
| MsG0780036472.01 | MsG0780040615.01 | 0.810636 | 1.044426e-50 | 6.328976e-48 |
| MsG0780036649.01 | MsG0780040615.01 | 0.810414 | 1.166587e-50 | 7.027263e-48 |
| MsG0780036925.01 | MsG0780040615.01 | -0.824468 | 7.942673e-54 | 7.040940e-51 |
| MsG0780036960.01 | MsG0780040615.01 | 0.806605 | 7.583763e-50 | 4.133810e-47 |
| MsG0780038519.01 | MsG0780040615.01 | 0.812320 | 4.499001e-51 | 2.851540e-48 |
| MsG0780038963.01 | MsG0780040615.01 | 0.858924 | 5.897415e-63 | 1.530344e-59 |
| MsG0780039677.01 | MsG0780040615.01 | 0.805633 | 1.215065e-49 | 6.460658e-47 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040615.01.T01 | MTR_7g093870 | 97.248 | 218 | 6 | 0 | 1 | 218 | 1 | 218 | 3.51e-157 | 434 |
| MsG0780040615.01.T01 | MTR_7g093820 | 57.754 | 187 | 71 | 4 | 8 | 193 | 15 | 194 | 2.90e-72 | 218 |
| MsG0780040615.01.T01 | MTR_7g093850 | 56.684 | 187 | 73 | 4 | 8 | 193 | 15 | 194 | 1.46e-70 | 214 |
| MsG0780040615.01.T01 | MTR_7g093790 | 52.551 | 196 | 85 | 4 | 1 | 193 | 1 | 191 | 3.27e-70 | 213 |
| MsG0780040615.01.T01 | MTR_7g093830 | 55.080 | 187 | 76 | 4 | 8 | 193 | 14 | 193 | 8.02e-69 | 209 |
| MsG0780040615.01.T01 | MTR_4g013335 | 52.727 | 165 | 70 | 3 | 30 | 193 | 39 | 196 | 4.74e-57 | 179 |
| MsG0780040615.01.T01 | MTR_1g054525 | 51.765 | 170 | 74 | 4 | 25 | 193 | 30 | 192 | 2.06e-55 | 175 |
| MsG0780040615.01.T01 | MTR_4g013320 | 54.487 | 156 | 66 | 2 | 38 | 193 | 49 | 199 | 7.04e-55 | 174 |
| MsG0780040615.01.T01 | MTR_4g013330 | 50.303 | 165 | 78 | 2 | 30 | 193 | 38 | 199 | 1.75e-54 | 173 |
| MsG0780040615.01.T01 | MTR_4g013350 | 53.205 | 156 | 68 | 2 | 38 | 193 | 47 | 197 | 2.94e-54 | 172 |
| MsG0780040615.01.T01 | MTR_4g013325 | 54.667 | 150 | 63 | 2 | 44 | 193 | 55 | 199 | 5.20e-54 | 172 |
| MsG0780040615.01.T01 | MTR_4g013345 | 51.515 | 165 | 74 | 3 | 30 | 193 | 37 | 196 | 2.48e-53 | 170 |
| MsG0780040615.01.T01 | MTR_7g070390 | 46.114 | 193 | 93 | 4 | 6 | 193 | 6 | 192 | 1.05e-51 | 166 |
| MsG0780040615.01.T01 | MTR_4g013310 | 49.112 | 169 | 78 | 4 | 26 | 193 | 36 | 197 | 2.51e-51 | 165 |
| MsG0780040615.01.T01 | MTR_3g105630 | 46.073 | 191 | 98 | 4 | 4 | 193 | 3 | 189 | 9.84e-46 | 150 |
| MsG0780040615.01.T01 | MTR_3g105640 | 46.512 | 172 | 88 | 3 | 22 | 193 | 21 | 188 | 3.68e-44 | 146 |
| MsG0780040615.01.T01 | MTR_4g073950 | 42.424 | 165 | 91 | 2 | 29 | 193 | 32 | 192 | 8.68e-43 | 143 |
| MsG0780040615.01.T01 | MTR_4g013385 | 41.975 | 162 | 76 | 3 | 38 | 193 | 41 | 190 | 2.66e-39 | 134 |
| MsG0780040615.01.T01 | MTR_0433s0040 | 41.975 | 162 | 76 | 3 | 38 | 193 | 41 | 190 | 2.66e-39 | 134 |
| MsG0780040615.01.T01 | MTR_4g013770 | 42.857 | 168 | 91 | 3 | 26 | 193 | 29 | 191 | 2.82e-39 | 134 |
| MsG0780040615.01.T01 | MTR_1g056370 | 40.860 | 186 | 100 | 4 | 12 | 192 | 5 | 185 | 7.56e-39 | 132 |
| MsG0780040615.01.T01 | MTR_5g096120 | 39.796 | 196 | 103 | 7 | 5 | 193 | 2 | 189 | 1.48e-37 | 129 |
| MsG0780040615.01.T01 | MTR_4g078885 | 39.459 | 185 | 96 | 4 | 16 | 193 | 10 | 185 | 1.09e-35 | 124 |
| MsG0780040615.01.T01 | MTR_3g034030 | 40.000 | 185 | 95 | 4 | 16 | 193 | 10 | 185 | 1.67e-35 | 124 |
| MsG0780040615.01.T01 | MTR_4g013355 | 39.873 | 158 | 76 | 4 | 38 | 193 | 39 | 179 | 9.04e-34 | 119 |
| MsG0780040615.01.T01 | MTR_4g122130 | 33.537 | 164 | 100 | 3 | 34 | 193 | 22 | 180 | 5.46e-22 | 89.0 |
| MsG0780040615.01.T01 | MTR_4g122110 | 35.099 | 151 | 93 | 2 | 43 | 193 | 35 | 180 | 7.48e-21 | 86.3 |
| MsG0780040615.01.T01 | MTR_4g049550 | 37.857 | 140 | 78 | 4 | 39 | 176 | 29 | 161 | 2.91e-20 | 84.7 |
| MsG0780040615.01.T01 | MTR_4g049570 | 35.664 | 143 | 83 | 4 | 36 | 176 | 26 | 161 | 4.28e-18 | 79.0 |
| MsG0780040615.01.T01 | MTR_8g099115 | 30.556 | 144 | 90 | 5 | 39 | 176 | 33 | 172 | 2.13e-12 | 63.9 |
| MsG0780040615.01.T01 | MTR_1g046800 | 39.175 | 97 | 53 | 2 | 76 | 171 | 134 | 225 | 6.94e-12 | 63.2 |
| MsG0780040615.01.T01 | MTR_1g046500 | 39.175 | 97 | 53 | 2 | 76 | 171 | 134 | 225 | 9.71e-12 | 62.8 |
| MsG0780040615.01.T01 | MTR_1g046490 | 36.082 | 97 | 56 | 2 | 76 | 171 | 120 | 211 | 4.25e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040615.01.T01 | AT4G38700 | 43.386 | 189 | 99 | 4 | 10 | 193 | 5 | 190 | 2.01e-49 | 160 |
| MsG0780040615.01.T01 | AT5G49040 | 42.051 | 195 | 103 | 5 | 4 | 193 | 2 | 191 | 4.83e-49 | 159 |
| MsG0780040615.01.T01 | AT1G58170 | 45.783 | 166 | 85 | 2 | 28 | 193 | 25 | 185 | 2.12e-48 | 157 |
| MsG0780040615.01.T01 | AT1G65870 | 47.853 | 163 | 80 | 2 | 30 | 192 | 32 | 189 | 2.79e-48 | 157 |
| MsG0780040615.01.T01 | AT5G42500 | 49.367 | 158 | 71 | 4 | 36 | 192 | 36 | 185 | 1.12e-47 | 155 |
| MsG0780040615.01.T01 | AT1G55210 | 48.077 | 156 | 73 | 3 | 38 | 193 | 40 | 187 | 1.19e-47 | 155 |
| MsG0780040615.01.T01 | AT1G55210 | 48.077 | 156 | 73 | 3 | 38 | 193 | 40 | 187 | 1.19e-47 | 155 |
| MsG0780040615.01.T01 | AT5G42510 | 46.591 | 176 | 76 | 6 | 22 | 192 | 20 | 182 | 1.63e-46 | 152 |
| MsG0780040615.01.T01 | AT3G13650 | 41.209 | 182 | 95 | 4 | 16 | 193 | 13 | 186 | 1.78e-44 | 147 |
| MsG0780040615.01.T01 | AT1G22900 | 46.386 | 166 | 81 | 5 | 27 | 192 | 36 | 193 | 1.82e-44 | 147 |
| MsG0780040615.01.T01 | AT2G21110 | 43.085 | 188 | 91 | 4 | 8 | 193 | 13 | 186 | 2.02e-43 | 144 |
| MsG0780040615.01.T01 | AT2G21100 | 43.506 | 154 | 82 | 2 | 39 | 192 | 39 | 187 | 7.40e-40 | 135 |
| MsG0780040615.01.T01 | AT2G21100 | 43.506 | 154 | 82 | 2 | 39 | 192 | 39 | 187 | 7.40e-40 | 135 |
| MsG0780040615.01.T01 | AT3G13662 | 43.506 | 154 | 78 | 4 | 28 | 180 | 27 | 172 | 6.27e-39 | 132 |
| MsG0780040615.01.T01 | AT3G13660 | 48.361 | 122 | 60 | 1 | 72 | 193 | 7 | 125 | 2.46e-37 | 127 |
| MsG0780040615.01.T01 | AT5G49030 | 40.782 | 179 | 96 | 5 | 4 | 177 | 2 | 175 | 1.33e-36 | 136 |
| MsG0780040615.01.T01 | AT3G58090 | 39.080 | 174 | 82 | 3 | 19 | 192 | 122 | 271 | 4.18e-32 | 117 |
| MsG0780040615.01.T01 | AT4G11190 | 23.977 | 171 | 110 | 4 | 1 | 166 | 1 | 156 | 8.07e-14 | 67.4 |
| MsG0780040615.01.T01 | AT4G11210 | 24.432 | 176 | 123 | 4 | 1 | 176 | 1 | 166 | 1.89e-12 | 63.9 |
| MsG0780040615.01.T01 | AT4G23690 | 27.407 | 135 | 82 | 4 | 38 | 166 | 36 | 160 | 6.52e-12 | 62.4 |
| MsG0780040615.01.T01 | AT3G24020 | 36.449 | 107 | 58 | 3 | 76 | 176 | 127 | 229 | 1.46e-11 | 62.4 |
| MsG0780040615.01.T01 | AT1G64160 | 25.197 | 127 | 91 | 2 | 48 | 174 | 41 | 163 | 1.93e-11 | 61.2 |
| MsG0780040615.01.T01 | AT4G13580 | 37.383 | 107 | 57 | 3 | 76 | 176 | 128 | 230 | 3.52e-11 | 61.2 |
| MsG0780040615.01.T01 | AT3G55230 | 32.258 | 124 | 78 | 3 | 76 | 193 | 181 | 304 | 5.22e-11 | 61.2 |
Find 66 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTGCATGACATCGTTTC+TGG | 0.106804 | 7:-80036628 | MsG0780040615.01.T01:CDS |
| TGATTTGGATTTACCGTTTA+AGG | 0.140473 | 7:+80036570 | None:intergenic |
| TTCCAATTTGTGTGGATTTA+AGG | 0.141437 | 7:+80036491 | None:intergenic |
| ACACAATTGGTGCCCCTATT+AGG | 0.182161 | 7:-80036342 | MsG0780040615.01.T01:CDS |
| ATAATAGGCATTTCCCTAAT+AGG | 0.226527 | 7:+80036328 | None:intergenic |
| GACCTTAAATCCACACAAAT+TGG | 0.228560 | 7:-80036493 | MsG0780040615.01.T01:CDS |
| ATTAGGGAAATGCCTATTAT+TGG | 0.243071 | 7:-80036325 | MsG0780040615.01.T01:CDS |
| ATTTGGCTCCATAGTTGTTT+TGG | 0.245004 | 7:-80036539 | MsG0780040615.01.T01:CDS |
| GGTATGATGGAGAAATATTT+TGG | 0.268450 | 7:+80036689 | None:intergenic |
| GGGAATGACCTTTGCGTTTA+CGG | 0.287886 | 7:-80036407 | MsG0780040615.01.T01:CDS |
| GAAGAAGGTTAGGCATAATA+TGG | 0.290656 | 7:+80036753 | None:intergenic |
| ATTCGCACGTGGCTTTATTC+AGG | 0.291247 | 7:-80036284 | MsG0780040615.01.T01:CDS |
| GCTTGAATTGGAACTTGTTA+TGG | 0.298192 | 7:-80036428 | MsG0780040615.01.T01:CDS |
| TAATAGGCATTTCCCTAATA+GGG | 0.300757 | 7:+80036329 | None:intergenic |
| GGTTAGGCATAATATGGTTT+TGG | 0.305830 | 7:+80036759 | None:intergenic |
| GCCAAATGGTAAGGGTGATT+TGG | 0.331702 | 7:+80036555 | None:intergenic |
| CACAATTGGTGCCCCTATTA+GGG | 0.332459 | 7:-80036341 | MsG0780040615.01.T01:CDS |
| GATTTGGATTTACCGTTTAA+GGG | 0.384652 | 7:+80036571 | None:intergenic |
| CTTGAATTGGAACTTGTTAT+GGG | 0.390234 | 7:-80036427 | MsG0780040615.01.T01:CDS |
| TCAAGAAGCTGTGCTTGAAT+TGG | 0.392492 | 7:-80036440 | MsG0780040615.01.T01:CDS |
| TCCCCGGTACCACCAATAAT+AGG | 0.396802 | 7:+80036313 | None:intergenic |
| AAAGAGAAAGGTTGTGAAGA+AGG | 0.402614 | 7:+80036738 | None:intergenic |
| TCCAAATCACCCTTACCATT+TGG | 0.403492 | 7:-80036556 | MsG0780040615.01.T01:CDS |
| CACTCAGTTGATTTACATAT+AGG | 0.436098 | 7:-80036253 | MsG0780040615.01.T01:CDS |
| GAAAGGTTGTGAAGAAGGTT+AGG | 0.438982 | 7:+80036743 | None:intergenic |
| GGTAGCACGCTTAGTGTGTT+AGG | 0.439844 | 7:-80036370 | MsG0780040615.01.T01:CDS |
| ATTTGTGTGGATTTAAGGTC+AGG | 0.454859 | 7:+80036496 | None:intergenic |
| ATGCCTATTATTGGTGGTAC+CGG | 0.459061 | 7:-80036316 | MsG0780040615.01.T01:CDS |
| TTCATGACTGAACCTTTGCT+TGG | 0.460351 | 7:-80036145 | MsG0780040615.01.T01:CDS |
| AGGTCAGGTCCAACGGTTAG+TGG | 0.461186 | 7:+80036511 | None:intergenic |
| AACTATGGAGCCAAATGGTA+AGG | 0.462409 | 7:+80036546 | None:intergenic |
| TGTTTGAAACCAAGGTATGA+TGG | 0.477684 | 7:+80036676 | None:intergenic |
| GTGTTAGGACGCAACACAAT+TGG | 0.481053 | 7:-80036355 | MsG0780040615.01.T01:CDS |
| TGCCTATTATTGGTGGTACC+GGG | 0.481664 | 7:-80036315 | MsG0780040615.01.T01:CDS |
| TCAGCTGAATCACCCTTAAA+CGG | 0.485639 | 7:-80036583 | MsG0780040615.01.T01:CDS |
| CAGCTTCTTGAGACACTGTC+AGG | 0.493796 | 7:+80036452 | None:intergenic |
| TGGGTCCTCCAAAACAACTA+TGG | 0.502600 | 7:+80036531 | None:intergenic |
| AATATTTCTCCATCATACCT+TGG | 0.511675 | 7:-80036685 | MsG0780040615.01.T01:CDS |
| AAAACAACTATGGAGCCAAA+TGG | 0.520460 | 7:+80036541 | None:intergenic |
| TCTTCAGATGCTGACGTGGA+AGG | 0.525579 | 7:+80036190 | None:intergenic |
| AGGGAAATGCCTATTATTGG+TGG | 0.527971 | 7:-80036322 | MsG0780040615.01.T01:CDS |
| ATATGACTACGGTAGGCGTT+GGG | 0.528526 | 7:+80036605 | None:intergenic |
| ATGACCTTTGCGTTTACGGA+AGG | 0.534363 | 7:-80036403 | MsG0780040615.01.T01:CDS |
| CTTCAGATGCTGACGTGGAA+GGG | 0.538461 | 7:+80036191 | None:intergenic |
| GTTTCTCTTGTTTGAAACCA+AGG | 0.539113 | 7:+80036668 | None:intergenic |
| TTGGAGGACCCACTAACCGT+TGG | 0.539953 | 7:-80036520 | MsG0780040615.01.T01:CDS |
| GATATGACTACGGTAGGCGT+TGG | 0.561189 | 7:+80036604 | None:intergenic |
| GGATTTAAGGTCAGGTCCAA+CGG | 0.563174 | 7:+80036504 | None:intergenic |
| AACAAAGGAAGAAAAGAGAA+AGG | 0.563669 | 7:+80036726 | None:intergenic |
| AACCTCTTCAGATGCTGACG+TGG | 0.568063 | 7:+80036186 | None:intergenic |
| TGACCTTTGCGTTTACGGAA+GGG | 0.572184 | 7:-80036402 | MsG0780040615.01.T01:CDS |
| GGTCAGGTCCAACGGTTAGT+GGG | 0.578675 | 7:+80036512 | None:intergenic |
| GTAGTAAGTGGCGTTAACAA+AGG | 0.578840 | 7:+80036711 | None:intergenic |
| AGTCATGAATCGACTTCCAT+CGG | 0.581651 | 7:+80036159 | None:intergenic |
| TTTCCCTTCCGTAAACGCAA+AGG | 0.582881 | 7:+80036399 | None:intergenic |
| AATAGGCATTTCCCTAATAG+GGG | 0.598346 | 7:+80036330 | None:intergenic |
| TTCCACGTCAGCATCTGAAG+AGG | 0.600223 | 7:-80036188 | MsG0780040615.01.T01:CDS |
| ACTATGGAGCCAAATGGTAA+GGG | 0.606063 | 7:+80036547 | None:intergenic |
| GCCTATTATTGGTGGTACCG+GGG | 0.610543 | 7:-80036314 | MsG0780040615.01.T01:CDS |
| TCAGCTGATATGACTACGGT+AGG | 0.613587 | 7:+80036598 | None:intergenic |
| TGATTCAGCTGATATGACTA+CGG | 0.632554 | 7:+80036594 | None:intergenic |
| TTTACGGAAGGGAAATTCAA+CGG | 0.641989 | 7:-80036391 | MsG0780040615.01.T01:CDS |
| ACGTGCGAATCTAAATTCCC+CGG | 0.656710 | 7:+80036297 | None:intergenic |
| ACATATAGGTGATGCTCACG+TGG | 0.665288 | 7:-80036239 | MsG0780040615.01.T01:CDS |
| ACACAAATTGGAAAAGCACA+AGG | 0.672986 | 7:-80036481 | MsG0780040615.01.T01:CDS |
| GGGGAATTTAGATTCGCACG+TGG | 0.718089 | 7:-80036295 | MsG0780040615.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAAATATTTTGGTAGTAAG+TGG | + | Chr7:80036208-80036227 | None:intergenic | 25.0% |
| AACAAAGGAAGAAAAGAGAA+AGG | + | Chr7:80036181-80036200 | None:intergenic | 30.0% | |
| AATATTTCTCCATCATACCT+TGG | - | Chr7:80036219-80036238 | MsG0780040615.01.T01:CDS | 30.0% | |
| ATAATAGGCATTTCCCTAAT+AGG | + | Chr7:80036579-80036598 | None:intergenic | 30.0% | |
| ATTAGGGAAATGCCTATTAT+TGG | - | Chr7:80036579-80036598 | MsG0780040615.01.T01:CDS | 30.0% | |
| GATTTGGATTTACCGTTTAA+GGG | + | Chr7:80036336-80036355 | None:intergenic | 30.0% | |
| TAATAGGCATTTCCCTAATA+GGG | + | Chr7:80036578-80036597 | None:intergenic | 30.0% | |
| TTCCAATTTGTGTGGATTTA+AGG | + | Chr7:80036416-80036435 | None:intergenic | 30.0% | |
| ! | CACTCAGTTGATTTACATAT+AGG | - | Chr7:80036651-80036670 | MsG0780040615.01.T01:CDS | 30.0% |
| ! | TGATTTGGATTTACCGTTTA+AGG | + | Chr7:80036337-80036356 | None:intergenic | 30.0% |
| !! | CTTGAATTGGAACTTGTTAT+GGG | - | Chr7:80036477-80036496 | MsG0780040615.01.T01:CDS | 30.0% |
| !! | GGTATGATGGAGAAATATTT+TGG | + | Chr7:80036218-80036237 | None:intergenic | 30.0% |
| AAAACAACTATGGAGCCAAA+TGG | + | Chr7:80036366-80036385 | None:intergenic | 35.0% | |
| AAAGAGAAAGGTTGTGAAGA+AGG | + | Chr7:80036169-80036188 | None:intergenic | 35.0% | |
| AATAGGCATTTCCCTAATAG+GGG | + | Chr7:80036577-80036596 | None:intergenic | 35.0% | |
| GAAGAAGGTTAGGCATAATA+TGG | + | Chr7:80036154-80036173 | None:intergenic | 35.0% | |
| GACCTTAAATCCACACAAAT+TGG | - | Chr7:80036411-80036430 | MsG0780040615.01.T01:CDS | 35.0% | |
| TGATTCAGCTGATATGACTA+CGG | + | Chr7:80036313-80036332 | None:intergenic | 35.0% | |
| TTTACGGAAGGGAAATTCAA+CGG | - | Chr7:80036513-80036532 | MsG0780040615.01.T01:CDS | 35.0% | |
| ! | ACACAAATTGGAAAAGCACA+AGG | - | Chr7:80036423-80036442 | MsG0780040615.01.T01:CDS | 35.0% |
| ! | ATTTGTGTGGATTTAAGGTC+AGG | + | Chr7:80036411-80036430 | None:intergenic | 35.0% |
| ! | GGTTAGGCATAATATGGTTT+TGG | + | Chr7:80036148-80036167 | None:intergenic | 35.0% |
| ! | GTTTCTCTTGTTTGAAACCA+AGG | + | Chr7:80036239-80036258 | None:intergenic | 35.0% |
| ! | TGTTTGAAACCAAGGTATGA+TGG | + | Chr7:80036231-80036250 | None:intergenic | 35.0% |
| ! | TTGTGCTTTTCCAATTTGTG+TGG | + | Chr7:80036424-80036443 | None:intergenic | 35.0% |
| !! | ATTTGGCTCCATAGTTGTTT+TGG | - | Chr7:80036365-80036384 | MsG0780040615.01.T01:CDS | 35.0% |
| !! | GCTTGAATTGGAACTTGTTA+TGG | - | Chr7:80036476-80036495 | MsG0780040615.01.T01:CDS | 35.0% |
| AACTATGGAGCCAAATGGTA+AGG | + | Chr7:80036361-80036380 | None:intergenic | 40.0% | |
| ACTATGGAGCCAAATGGTAA+GGG | + | Chr7:80036360-80036379 | None:intergenic | 40.0% | |
| AGGGAAATGCCTATTATTGG+TGG | - | Chr7:80036582-80036601 | MsG0780040615.01.T01:CDS | 40.0% | |
| CGATGTCATGCAAGAAAAAG+TGG | + | Chr7:80036272-80036291 | None:intergenic | 40.0% | |
| GAAAGGTTGTGAAGAAGGTT+AGG | + | Chr7:80036164-80036183 | None:intergenic | 40.0% | |
| GTAGTAAGTGGCGTTAACAA+AGG | + | Chr7:80036196-80036215 | None:intergenic | 40.0% | |
| TCAAGAAGCTGTGCTTGAAT+TGG | - | Chr7:80036464-80036483 | MsG0780040615.01.T01:CDS | 40.0% | |
| TCAGCTGAATCACCCTTAAA+CGG | - | Chr7:80036321-80036340 | MsG0780040615.01.T01:CDS | 40.0% | |
| TCCAAATCACCCTTACCATT+TGG | - | Chr7:80036348-80036367 | MsG0780040615.01.T01:CDS | 40.0% | |
| TTCATGACTGAACCTTTGCT+TGG | - | Chr7:80036759-80036778 | MsG0780040615.01.T01:CDS | 40.0% | |
| TTCTTGCATGACATCGTTTC+TGG | - | Chr7:80036276-80036295 | MsG0780040615.01.T01:CDS | 40.0% | |
| ! | AGTCATGAATCGACTTCCAT+CGG | + | Chr7:80036748-80036767 | None:intergenic | 40.0% |
| ! | ATGCCTATTATTGGTGGTAC+CGG | - | Chr7:80036588-80036607 | MsG0780040615.01.T01:CDS | 40.0% |
| ACATATAGGTGATGCTCACG+TGG | - | Chr7:80036665-80036684 | MsG0780040615.01.T01:CDS | 45.0% | |
| ACGTGCGAATCTAAATTCCC+CGG | + | Chr7:80036610-80036629 | None:intergenic | 45.0% | |
| ATATGACTACGGTAGGCGTT+GGG | + | Chr7:80036302-80036321 | None:intergenic | 45.0% | |
| ATGACCTTTGCGTTTACGGA+AGG | - | Chr7:80036501-80036520 | MsG0780040615.01.T01:CDS | 45.0% | |
| GCCAAATGGTAAGGGTGATT+TGG | + | Chr7:80036352-80036371 | None:intergenic | 45.0% | |
| GGGAATGACCTTTGCGTTTA+CGG | - | Chr7:80036497-80036516 | MsG0780040615.01.T01:CDS | 45.0% | |
| GTGTTAGGACGCAACACAAT+TGG | - | Chr7:80036549-80036568 | MsG0780040615.01.T01:CDS | 45.0% | |
| TCAGCTGATATGACTACGGT+AGG | + | Chr7:80036309-80036328 | None:intergenic | 45.0% | |
| TGACCTTTGCGTTTACGGAA+GGG | - | Chr7:80036502-80036521 | MsG0780040615.01.T01:CDS | 45.0% | |
| TGGGTCCTCCAAAACAACTA+TGG | + | Chr7:80036376-80036395 | None:intergenic | 45.0% | |
| TTTCCCTTCCGTAAACGCAA+AGG | + | Chr7:80036508-80036527 | None:intergenic | 45.0% | |
| ! | ACACAATTGGTGCCCCTATT+AGG | - | Chr7:80036562-80036581 | MsG0780040615.01.T01:CDS | 45.0% |
| ! | CACAATTGGTGCCCCTATTA+GGG | - | Chr7:80036563-80036582 | MsG0780040615.01.T01:CDS | 45.0% |
| ! | GGATTTAAGGTCAGGTCCAA+CGG | + | Chr7:80036403-80036422 | None:intergenic | 45.0% |
| ! | TCTGAAGAGGTTTTTGCCGA+TGG | - | Chr7:80036729-80036748 | MsG0780040615.01.T01:CDS | 45.0% |
| ! | TGCCTATTATTGGTGGTACC+GGG | - | Chr7:80036589-80036608 | MsG0780040615.01.T01:CDS | 45.0% |
| !! | ATTCGCACGTGGCTTTATTC+AGG | - | Chr7:80036620-80036639 | MsG0780040615.01.T01:CDS | 45.0% |
| !!! | TGGCTCCATAGTTGTTTTGG+AGG | - | Chr7:80036368-80036387 | MsG0780040615.01.T01:CDS | 45.0% |
| AACCTCTTCAGATGCTGACG+TGG | + | Chr7:80036721-80036740 | None:intergenic | 50.0% | |
| CAGCTTCTTGAGACACTGTC+AGG | + | Chr7:80036455-80036474 | None:intergenic | 50.0% | |
| CTTCAGATGCTGACGTGGAA+GGG | + | Chr7:80036716-80036735 | None:intergenic | 50.0% | |
| GATATGACTACGGTAGGCGT+TGG | + | Chr7:80036303-80036322 | None:intergenic | 50.0% | |
| GGGGAATTTAGATTCGCACG+TGG | - | Chr7:80036609-80036628 | MsG0780040615.01.T01:CDS | 50.0% | |
| GGTAGCACGCTTAGTGTGTT+AGG | - | Chr7:80036534-80036553 | MsG0780040615.01.T01:CDS | 50.0% | |
| TCCCCGGTACCACCAATAAT+AGG | + | Chr7:80036594-80036613 | None:intergenic | 50.0% | |
| TCTTCAGATGCTGACGTGGA+AGG | + | Chr7:80036717-80036736 | None:intergenic | 50.0% | |
| TTCCACGTCAGCATCTGAAG+AGG | - | Chr7:80036716-80036735 | MsG0780040615.01.T01:CDS | 50.0% | |
| ! | GCCTATTATTGGTGGTACCG+GGG | - | Chr7:80036590-80036609 | MsG0780040615.01.T01:CDS | 50.0% |
| AGGTCAGGTCCAACGGTTAG+TGG | + | Chr7:80036396-80036415 | None:intergenic | 55.0% | |
| GGTCAGGTCCAACGGTTAGT+GGG | + | Chr7:80036395-80036414 | None:intergenic | 55.0% | |
| TTGGAGGACCCACTAACCGT+TGG | - | Chr7:80036384-80036403 | MsG0780040615.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 80036135 | 80036791 | 80036135 | ID=MsG0780040615.01;Name=MsG0780040615.01 |
| Chr7 | mRNA | 80036135 | 80036791 | 80036135 | ID=MsG0780040615.01.T01;Parent=MsG0780040615.01;Name=MsG0780040615.01.T01;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|218 |
| Chr7 | exon | 80036135 | 80036791 | 80036135 | ID=MsG0780040615.01.T01:exon:16394;Parent=MsG0780040615.01.T01 |
| Chr7 | CDS | 80036135 | 80036791 | 80036135 | ID=MsG0780040615.01.T01:cds;Parent=MsG0780040615.01.T01 |
| Gene Sequence |
| Protein sequence |
