AlfalfaGEDB | MsG0080048537.01

M. sativa cultivar ZhongmuNo.1 / MsG0080048537.01

KEGG: -
GO: -
PFAM: PF03018

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048537.01.T01	KEH15438.1	83.333	36	6	1	36	51	86	1.34E-12	66.6
MsG0080048537.01.T02	XP_013447143.1	95.676	185	8	1	185	1	185	1.64E-129	371
MsG0080048537.01.T03	XP_013447143.1	95.93	172	7	1	172	14	185	6.90E-121	348
MsG0080048537.01.T04	XP_013447143.1	96.689	151	5	1	151	35	185	5.10E-106	310
MsG0080048537.01.T05	TKY60689.1	57.143	63	27	1	63	1	63	6.48E-13	68.6
MsG0080048537.01.T06	XP_013447143.1	97.917	48	1	1	48	138	185	1.10E-26	104
MsG0080048537.01.T07	XP_013447143.1	100	31	0	1	31	155	185	2.91E-14	72

Showing 1 to 7 of 7 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048537.01.T02	P13240	80	185	36	1	1	185	1	184	2.52E-109	313
MsG0080048537.01.T03	P13240	81.977	172	31	0	1	172	13	184	2.98E-105	301
MsG0080048537.01.T04	P13240	81.457	151	28	0	1	151	34	184	1.53E-89	261
MsG0080048537.01.T06	P13240	86.957	46	6	0	3	48	139	184	8.19E-24	90.1
MsG0080048537.01.T07	P13240	87.097	31	4	0	1	31	154	184	1.85E-13	62.4

Showing 1 to 5 of 5 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048537.01.T01	A0A072TEK3	83.333	36	6	1	36	51	86	6.42e-13	66.6
MsG0080048537.01.T02	I3T8W3	95.676	185	8	1	185	1	185	7.85e-130	371
MsG0080048537.01.T03	I3T8W3	95.930	172	7	1	172	14	185	3.30e-121	348
MsG0080048537.01.T04	I3T8W3	96.689	151	5	1	151	35	185	2.44e-106	310
MsG0080048537.01.T05	A0A072TEK3	88.235	34	4	1	34	51	84	2.89e-12	66.2
MsG0080048537.01.T06	I3T8W3	97.917	48	1	1	48	138	185	5.25e-27	104
MsG0080048537.01.T07	I3T8W3	100.000	31	0	1	31	155	185	1.39e-14	72.0

Showing 1 to 7 of 7 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0080048537.01	MsG0080048537.01	PPI
MsG0080048537.01	MsG0080048838.01	PPI
MsG0080048537.01	MsG0780040613.01	PPI
MsG0080048537.01	MsG0780040610.01	PPI
MsG0080048537.01	MsG0780040610.01	PPI
MsG0080048537.01	MsG0080048838.01	PPI
MsG0080048537.01	MsG0780040615.01	PPI
MsG0080048537.01	MsG0780040613.01	PPI
MsG0080048537.01	MsG0480018519.01	PPI
MsG0080048537.01	MsG0780040610.01	PPI

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048537.01.T01	MTR_1051s0010	83.333	36	6	0	1	36	51	86	1.63e-16	66.6
MsG0080048537.01.T01	MTR_8g064660	90.625	32	3	0	1	32	51	82	8.89e-15	63.2
MsG0080048537.01.T02	MTR_8g099135	95.676	185	8	0	1	185	1	185	1.99e-133	371
MsG0080048537.01.T02	MTR_8g099115	67.251	171	52	1	19	185	19	189	3.15e-86	252
MsG0080048537.01.T02	MTR_1051s0010	81.818	44	8	0	14	57	1	44	2.22e-19	79.7
MsG0080048537.01.T02	MTR_8g064660	81.818	44	8	0	14	57	1	44	8.09e-19	79.3
MsG0080048537.01.T02	MTR_4g013310	32.593	135	80	4	38	170	59	184	8.38e-15	69.7
MsG0080048537.01.T02	MTR_4g013320	32.576	132	80	3	38	168	59	182	9.43e-15	69.7
MsG0080048537.01.T02	MTR_4g073950	34.586	133	77	4	34	164	47	171	1.24e-14	68.9
MsG0080048537.01.T02	MTR_4g122110	31.373	153	93	4	34	182	36	180	1.42e-14	68.6

Showing 1 to 10 of 64 entries

Previous1 2 3 4 5 6 7Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048537.01.T02	AT1G64160	51.786	168	74	2	18	185	22	182	1.39e-61	189
MsG0080048537.01.T02	AT4G23690	52.258	155	68	1	31	185	39	187	1.78e-58	181
MsG0080048537.01.T02	AT4G11210	45.251	179	92	1	7	185	11	183	2.78e-54	171
MsG0080048537.01.T02	AT4G11190	41.579	190	99	4	1	185	1	183	2.39e-51	163
MsG0080048537.01.T02	AT4G11180	44.382	178	92	2	9	185	14	185	3.54e-45	147
MsG0080048537.01.T02	AT1G22900	33.333	165	87	6	7	160	19	171	5.08e-16	72.8
MsG0080048537.01.T02	AT2G21110	28.235	170	111	6	1	164	1	165	2.37e-15	70.9
MsG0080048537.01.T02	AT1G65870	29.870	154	97	4	17	167	27	172	3.48e-13	65.1
MsG0080048537.01.T02	AT2G21100	33.824	136	81	5	34	168	44	171	2.15e-12	63.2
MsG0080048537.01.T02	AT2G21100	33.824	136	81	5	34	168	44	171	2.15e-12	63.2

Showing 1 to 10 of 44 entries

Previous1 2 3 4 5Next

Find 23 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAATTGGAAGAGCACA+AGG	0.569554	contig349end:-81019	MsG0080048537.01.T01:CDS
AAACTGCTATGTTACCAAAG+TGG	0.599214	contig349end:+81080	None:intergenic
AAATTATGTCATGAAAATAA+AGG	0.418683	contig349end:+81188	None:intergenic
AACACATACACTTCTTGGCT+TGG	0.394278	contig349end:-80974	MsG0080048537.01.T01:CDS
AACCTTTATTCAAAACCAAT+TGG	0.402372	contig349end:-81031	MsG0080048537.01.T01:CDS
AAGCCTTGTGCTCTTCCAAT+TGG	0.427146	contig349end:+81016	None:intergenic
AGAGAGTATAATTGGAACTT+TGG	0.427614	contig349end:+81288	None:intergenic
AGAGATATCTCTATAACTGG+TGG	0.609760	contig349end:-80872	MsG0080048537.01.T01:intron
AGATTAAGTTCTTTGAGTGC+TGG	0.486262	contig349end:-80763	MsG0080048537.01.T02:CDS
AGGTGCTAATTTAACTATAT+TGG	0.304835	contig349end:-81113	MsG0080048537.01.T02:CDS

Showing 1 to 10 of 23 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGTAGAGATATCTCTATAAC+TGG	-	contig349end:81180-81199	MsG0080048537.01.T02:CDS	30.0%
ATAGTTAAATTAGCACCTTG+TGG	+	contig349end:80940-80959	None:intergenic	30.0%
ATTTACAATGGAATGAATGC+AGG	-	contig349end:80886-80905	MsG0080048537.01.T01:intron	30.0%
AAACTGCTATGTTACCAAAG+TGG	+	contig349end:80978-80997	None:intergenic	35.0%
AGAGATATCTCTATAACTGG+TGG	-	contig349end:81183-81202	MsG0080048537.01.T02:CDS	35.0%
AGATTAAGTTCTTTGAGTGC+TGG	-	contig349end:81292-81311	MsG0080048537.01.T02:CDS	35.0%
AGGTTGTTATCCAATGTGAT+AGG	+	contig349end:81009-81028	None:intergenic	35.0%
ATACACACCATGCAAAAACA+TGG	-	contig349end:80843-80862	MsG0080048537.01.T01:intron	35.0%
ATGTTACCAAAGTGGAATTG+AGG	+	contig349end:80970-80989	None:intergenic	35.0%
CCAAAAACACATACACTTCT+TGG	-	contig349end:81076-81095	MsG0080048537.01.T02:CDS	35.0%

Showing 1 to 10 of 37 entries

Previous1 2 3 4Next

Chromosome	Type	Strat	End	Strand	Name
contig349end	gene	80760	81317	80760	ID=MsG0080048537.01;Name=MsG0080048537.01
contig349end	mRNA	80828	81076	80828	ID=MsG0080048537.01.T01;Parent=MsG0080048537.01;Name=MsG0080048537.01.T01;_AED=0.47;_eAED=1.00;_QI=0\|0\|0\|1\|0\|0\|2\|0\|40
contig349end	exon	80974	81076	80974	ID=MsG0080048537.01.T01:exon:17034;Parent=MsG0080048537.01.T01
contig349end	exon	80828	80847	80828	ID=MsG0080048537.01.T01:exon:17035;Parent=MsG0080048537.01.T01
contig349end	CDS	80974	81076	80974	ID=MsG0080048537.01.T01:cds;Parent=MsG0080048537.01.T01
contig349end	CDS	80828	80847	80828	ID=MsG0080048537.01.T01:cds;Parent=MsG0080048537.01.T01
contig349end	mRNA	80760	81317	80760	ID=MsG0080048537.01.T02;Parent=MsG0080048537.01;Name=MsG0080048537.01.T02;_AED=0.34;_eAED=0.34;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|185
contig349end	exon	80760	81317	80760	ID=MsG0080048537.01.T02:exon:17036;Parent=MsG0080048537.01.T02
contig349end	CDS	80760	81317	80760	ID=MsG0080048537.01.T02:cds;Parent=MsG0080048537.01.T02
contig349end	mRNA	80760	81278	80760	ID=MsG0080048537.01.T03;Parent=MsG0080048537.01;Name=MsG0080048537.01.T03;_AED=0.36;_eAED=0.36;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|172
contig349end	exon	80760	81278	80760	ID=MsG0080048537.01.T03:exon:17037;Parent=MsG0080048537.01.T03
contig349end	CDS	80760	81278	80760	ID=MsG0080048537.01.T03:cds;Parent=MsG0080048537.01.T03
contig349end	mRNA	80760	81215	80760	ID=MsG0080048537.01.T04;Parent=MsG0080048537.01;Name=MsG0080048537.01.T04;_AED=0.37;_eAED=0.37;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|151
contig349end	exon	80760	81215	80760	ID=MsG0080048537.01.T04:exon:17038;Parent=MsG0080048537.01.T04
contig349end	CDS	80760	81215	80760	ID=MsG0080048537.01.T04:cds;Parent=MsG0080048537.01.T04
contig349end	mRNA	80879	81076	80879	ID=MsG0080048537.01.T05;Parent=MsG0080048537.01;Name=MsG0080048537.01.T05;_AED=0.44;_eAED=0.44;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|65
contig349end	exon	80879	81076	80879	ID=MsG0080048537.01.T05:exon:17039;Parent=MsG0080048537.01.T05
contig349end	CDS	80879	81076	80879	ID=MsG0080048537.01.T05:cds;Parent=MsG0080048537.01.T05
contig349end	mRNA	80760	80906	80760	ID=MsG0080048537.01.T06;Parent=MsG0080048537.01;Name=MsG0080048537.01.T06;_AED=0.46;_eAED=0.46;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|48
contig349end	exon	80760	80906	80760	ID=MsG0080048537.01.T06:exon:17040;Parent=MsG0080048537.01.T06
contig349end	CDS	80760	80906	80760	ID=MsG0080048537.01.T06:cds;Parent=MsG0080048537.01.T06
contig349end	mRNA	80760	80855	80760	ID=MsG0080048537.01.T07;Parent=MsG0080048537.01;Name=MsG0080048537.01.T07;_AED=0.47;_eAED=0.47;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|31
contig349end	exon	80760	80855	80760	ID=MsG0080048537.01.T07:exon:17041;Parent=MsG0080048537.01.T07
contig349end	CDS	80760	80855	80760	ID=MsG0080048537.01.T07:cds;Parent=MsG0080048537.01.T07

Gene Sequence

>MsG0080048537.01.T01

ATGACCCTATCACATTGGATAACAACCTTTATTCAAAACCAATTGGAAGAGCACAAGGCTTTTACATTTATGATACCAAAAACACATACACTTCTTGGCTTGGAGGAATTGCTACTATTATGA

>MsG0080048537.01.T06

ATGCAGAAAAGTAGAGATATCTCTATAACTGGTGGAACTGGAGATTTCTTTATGCATAGAGGAATTGCTACTATTATGACTGATGCTTTTGAAGGTGAGGTCTATTTTCGACTTCGTGTTGAGATTAAGTTCTTTGAGTGCTGGTGA

>MsG0080048537.01.T07

ATGCATAGAGGAATTGCTACTATTATGACTGATGCTTTTGAAGGTGAGGTCTATTTTCGACTTCGTGTTGAGATTAAGTTCTTTGAGTGCTGGTGA

>MsG0080048537.01.T04

ATGGTCCTTTATTTTCATGACATAATTTACAATGGAATGAATGCAGGTAATGCAACATCTGCAATAGTTGCAGCACCACAAGGTGCTAATTTAACTATATTGGCACCTCAATTCCACTTTGGTAACATAGCAGTTTTTGATGACCCTATCACATTGGATAACAACCTTTATTCAAAACCAATTGGAAGAGCACAAGGCTTTTACATTTATGATACCAAAAACACATACACTTCTTGGCTTGGTTTCACATTTGTTCTTAACAGCACTTATCATGAAGGAACCATTACTTTTGCTGGTGCTGACCCAATTATGCAGAAAAGTAGAGATATCTCTATAACTGGTGGAACTGGAGATTTCTTTATGCATAGAGGAATTGCTACTATTATGACTGATGCTTTTGAAGGTGAGGTCTATTTTCGACTTCGTGTTGAGATTAAGTTCTTTGAGTGCTGGTGA

>MsG0080048537.01.T02

ATGGGTACCAAAGTTCCAATTATACTCTCTGTTTTTGTAATGTTGTATGCTTTAAGTTCAGCAATTCCAAGCAAAAGAAAGCCATACACACCATGCAAAAACATGGTCCTTTATTTTCATGACATAATTTACAATGGAATGAATGCAGGTAATGCAACATCTGCAATAGTTGCAGCACCACAAGGTGCTAATTTAACTATATTGGCACCTCAATTCCACTTTGGTAACATAGCAGTTTTTGATGACCCTATCACATTGGATAACAACCTTTATTCAAAACCAATTGGAAGAGCACAAGGCTTTTACATTTATGATACCAAAAACACATACACTTCTTGGCTTGGTTTCACATTTGTTCTTAACAGCACTTATCATGAAGGAACCATTACTTTTGCTGGTGCTGACCCAATTATGCAGAAAAGTAGAGATATCTCTATAACTGGTGGAACTGGAGATTTCTTTATGCATAGAGGAATTGCTACTATTATGACTGATGCTTTTGAAGGTGAGGTCTATTTTCGACTTCGTGTTGAGATTAAGTTCTTTGAGTGCTGGTGA

>MsG0080048537.01.T03

ATGTTGTATGCTTTAAGTTCAGCAATTCCAAGCAAAAGAAAGCCATACACACCATGCAAAAACATGGTCCTTTATTTTCATGACATAATTTACAATGGAATGAATGCAGGTAATGCAACATCTGCAATAGTTGCAGCACCACAAGGTGCTAATTTAACTATATTGGCACCTCAATTCCACTTTGGTAACATAGCAGTTTTTGATGACCCTATCACATTGGATAACAACCTTTATTCAAAACCAATTGGAAGAGCACAAGGCTTTTACATTTATGATACCAAAAACACATACACTTCTTGGCTTGGTTTCACATTTGTTCTTAACAGCACTTATCATGAAGGAACCATTACTTTTGCTGGTGCTGACCCAATTATGCAGAAAAGTAGAGATATCTCTATAACTGGTGGAACTGGAGATTTCTTTATGCATAGAGGAATTGCTACTATTATGACTGATGCTTTTGAAGGTGAGGTCTATTTTCGACTTCGTGTTGAGATTAAGTTCTTTGAGTGCTGGTGA

>MsG0080048537.01.T05

ATGACCCTATCACATTGGATAACAACCTTTATTCAAAACCAATTGGAAGAGCACAAGGCTTTTACATTTATGATACCAAAAACACATACACTTCTTGGCTTGGTTTCACATTTGTTCTTAACAGCACTTATCATGAAGGAACCATTACTTTTGCTGGTGCTGACCCAATTATGCAGAAAAGTAGAGATATCTCTATAA

Protein sequence

>MsG0080048537.01.T01

MTLSHWITTFIQNQLEEHKAFTFMIPKTHTLLGLEELLLL*

>MsG0080048537.01.T06

MQKSRDISITGGTGDFFMHRGIATIMTDAFEGEVYFRLRVEIKFFECW*

>MsG0080048537.01.T07

MHRGIATIMTDAFEGEVYFRLRVEIKFFECW*

>MsG0080048537.01.T04

MVLYFHDIIYNGMNAGNATSAIVAAPQGANLTILAPQFHFGNIAVFDDPITLDNNLYSKPIGRAQGFYIYDTKNTYTSWLGFTFVLNSTYHEGTITFAGADPIMQKSRDISITGGTGDFFMHRGIATIMTDAFEGEVYFRLRVEIKFFECW*

>MsG0080048537.01.T02

MGTKVPIILSVFVMLYALSSAIPSKRKPYTPCKNMVLYFHDIIYNGMNAGNATSAIVAAPQGANLTILAPQFHFGNIAVFDDPITLDNNLYSKPIGRAQGFYIYDTKNTYTSWLGFTFVLNSTYHEGTITFAGADPIMQKSRDISITGGTGDFFMHRGIATIMTDAFEGEVYFRLRVEIKFFECW*

>MsG0080048537.01.T03

MLYALSSAIPSKRKPYTPCKNMVLYFHDIIYNGMNAGNATSAIVAAPQGANLTILAPQFHFGNIAVFDDPITLDNNLYSKPIGRAQGFYIYDTKNTYTSWLGFTFVLNSTYHEGTITFAGADPIMQKSRDISITGGTGDFFMHRGIATIMTDAFEGEVYFRLRVEIKFFECW*

>MsG0080048537.01.T05

MTLSHWITTFIQNQLEEHKAFTFMIPKTHTLLGLVSHLFLTALIMKEPLLLLVLTQLCRKVEISL*