Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044027.01.T01 | XP_024627598.1 | 89.744 | 195 | 12 | 1 | 1 | 187 | 80 | 274 | 2.29E-125 | 364 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044027.01.T01 | P21745 | 60.335 | 179 | 63 | 3 | 13 | 187 | 94 | 268 | 4.15E-73 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044027.01.T01 | A0A396GLU8 | 89.744 | 195 | 12 | 1 | 1 | 187 | 80 | 274 | 1.09e-125 | 364 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001029.01 | MsG0880044027.01 | 0.811056 | 8.474545e-51 | 5.193361e-48 |
| MsG0880043998.01 | MsG0880044027.01 | 0.952772 | 1.176560e-110 | 2.943900e-105 |
| MsG0180004549.01 | MsG0880044027.01 | 0.801061 | 1.075683e-48 | 5.088681e-46 |
| MsG0180004610.01 | MsG0880044027.01 | 0.802213 | 6.241227e-49 | 3.039725e-46 |
| MsG0880042591.01 | MsG0880044027.01 | 0.824522 | 7.710413e-54 | 6.846386e-51 |
| MsG0880043882.01 | MsG0880044027.01 | 0.807149 | 5.819229e-50 | 3.216912e-47 |
| MsG0380011686.01 | MsG0880044027.01 | 0.807643 | 4.571774e-50 | 2.559978e-47 |
| MsG0480019663.01 | MsG0880044027.01 | 0.803710 | 3.060641e-49 | 1.548775e-46 |
| MsG0480021227.01 | MsG0880044027.01 | 0.822280 | 2.578043e-53 | 2.148177e-50 |
| MsG0580024207.01 | MsG0880044027.01 | 0.805090 | 1.579128e-49 | 8.279956e-47 |
| MsG0580024220.01 | MsG0880044027.01 | 0.801524 | 8.646428e-49 | 4.138219e-46 |
| MsG0380017901.01 | MsG0880044027.01 | 0.809442 | 1.888273e-50 | 1.108787e-47 |
| MsG0480018362.01 | MsG0880044027.01 | 0.833586 | 4.897015e-56 | 5.664514e-53 |
| MsG0580028490.01 | MsG0880044027.01 | 0.800699 | 1.274830e-48 | 5.975223e-46 |
| MsG0680030613.01 | MsG0880044027.01 | 0.839323 | 1.697625e-57 | 2.336129e-54 |
| MsG0280009432.01 | MsG0880044027.01 | 0.803598 | 3.228861e-49 | 1.629347e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044027.01.T01 | MTR_8g445140 | 79.605 | 152 | 31 | 0 | 23 | 174 | 152 | 303 | 8.60e-88 | 260 |
| MsG0880044027.01.T01 | MTR_8g445170 | 70.690 | 174 | 49 | 1 | 16 | 187 | 224 | 397 | 2.45e-87 | 262 |
| MsG0880044027.01.T01 | MTR_8g045890 | 72.671 | 161 | 44 | 0 | 27 | 187 | 285 | 445 | 1.46e-86 | 261 |
| MsG0880044027.01.T01 | MTR_8g045890 | 72.671 | 161 | 44 | 0 | 27 | 187 | 326 | 486 | 5.37e-86 | 261 |
| MsG0880044027.01.T01 | MTR_8g045890 | 72.671 | 161 | 44 | 0 | 27 | 187 | 363 | 523 | 1.35e-85 | 261 |
| MsG0880044027.01.T01 | MTR_8g045880 | 76.250 | 160 | 38 | 0 | 28 | 187 | 169 | 328 | 5.39e-84 | 251 |
| MsG0880044027.01.T01 | MTR_8g045880 | 76.250 | 160 | 38 | 0 | 28 | 187 | 204 | 363 | 1.32e-83 | 251 |
| MsG0880044027.01.T01 | MTR_8g045880 | 76.250 | 160 | 38 | 0 | 28 | 187 | 206 | 365 | 1.72e-83 | 251 |
| MsG0880044027.01.T01 | MTR_8g046000 | 62.500 | 176 | 66 | 0 | 12 | 187 | 61 | 236 | 3.56e-82 | 243 |
| MsG0880044027.01.T01 | MTR_1g045860 | 62.570 | 179 | 59 | 3 | 13 | 187 | 95 | 269 | 5.62e-77 | 231 |
| MsG0880044027.01.T01 | MTR_8g044290 | 73.485 | 132 | 33 | 1 | 18 | 147 | 209 | 340 | 3.16e-65 | 207 |
| MsG0880044027.01.T01 | MTR_2g081610 | 49.091 | 165 | 75 | 2 | 19 | 174 | 96 | 260 | 5.59e-58 | 183 |
| MsG0880044027.01.T01 | MTR_2g081770 | 48.913 | 184 | 85 | 4 | 1 | 176 | 91 | 273 | 1.13e-56 | 180 |
| MsG0880044027.01.T01 | MTR_2g081590 | 47.904 | 167 | 78 | 2 | 17 | 174 | 94 | 260 | 6.11e-53 | 170 |
| MsG0880044027.01.T01 | MTR_3g109490 | 46.622 | 148 | 69 | 3 | 36 | 173 | 174 | 321 | 3.22e-40 | 139 |
| MsG0880044027.01.T01 | MTR_1g008470 | 46.099 | 141 | 71 | 4 | 36 | 171 | 157 | 297 | 1.09e-38 | 134 |
| MsG0880044027.01.T01 | MTR_0312s0030 | 44.828 | 145 | 74 | 4 | 34 | 172 | 179 | 323 | 1.33e-37 | 132 |
| MsG0880044027.01.T01 | MTR_1g007520 | 44.828 | 145 | 74 | 4 | 34 | 172 | 179 | 323 | 1.33e-37 | 132 |
| MsG0880044027.01.T01 | MTR_1g008590 | 44.828 | 145 | 74 | 4 | 34 | 172 | 179 | 323 | 1.77e-37 | 132 |
| MsG0880044027.01.T01 | MTR_1g008530 | 43.836 | 146 | 75 | 4 | 34 | 172 | 77 | 222 | 2.51e-37 | 129 |
| MsG0880044027.01.T01 | MTR_1g008580 | 43.243 | 148 | 77 | 4 | 34 | 174 | 25 | 172 | 2.91e-37 | 127 |
| MsG0880044027.01.T01 | MTR_1g008460 | 45.775 | 142 | 72 | 4 | 35 | 171 | 153 | 294 | 3.17e-37 | 130 |
| MsG0880044027.01.T01 | MTR_1g008500 | 42.466 | 146 | 77 | 3 | 34 | 172 | 238 | 383 | 5.89e-36 | 129 |
| MsG0880044027.01.T01 | MTR_1g008560 | 43.836 | 146 | 75 | 4 | 34 | 172 | 183 | 328 | 6.50e-36 | 128 |
| MsG0880044027.01.T01 | MTR_1g008510 | 43.836 | 146 | 75 | 4 | 34 | 172 | 179 | 324 | 1.10e-35 | 127 |
| MsG0880044027.01.T01 | MTR_1g008450 | 44.030 | 134 | 70 | 4 | 43 | 171 | 177 | 310 | 3.34e-31 | 115 |
| MsG0880044027.01.T01 | MTR_3g116380 | 39.286 | 140 | 76 | 5 | 43 | 173 | 163 | 302 | 5.54e-23 | 93.6 |
| MsG0880044027.01.T01 | MTR_3g107830 | 36.486 | 148 | 84 | 4 | 36 | 173 | 108 | 255 | 2.11e-21 | 88.6 |
| MsG0880044027.01.T01 | MTR_4g069680 | 37.162 | 148 | 83 | 5 | 36 | 173 | 139 | 286 | 6.01e-21 | 87.8 |
| MsG0880044027.01.T01 | MTR_3g116410 | 36.913 | 149 | 84 | 5 | 36 | 174 | 128 | 276 | 4.05e-20 | 85.5 |
| MsG0880044027.01.T01 | MTR_3g116320 | 36.879 | 141 | 79 | 5 | 43 | 173 | 547 | 687 | 1.39e-18 | 83.2 |
| MsG0880044027.01.T01 | MTR_4g069570 | 34.000 | 150 | 87 | 7 | 36 | 173 | 186 | 335 | 3.10e-18 | 80.9 |
| MsG0880044027.01.T01 | MTR_3g116270 | 36.879 | 141 | 79 | 5 | 43 | 173 | 365 | 505 | 9.49e-18 | 80.5 |
| MsG0880044027.01.T01 | MTR_4g069550 | 34.000 | 150 | 87 | 6 | 36 | 173 | 313 | 462 | 4.50e-17 | 78.6 |
| MsG0880044027.01.T01 | MTR_4g069040 | 32.432 | 148 | 88 | 7 | 43 | 178 | 367 | 514 | 6.84e-17 | 78.2 |
| MsG0880044027.01.T01 | MTR_8g064500 | 33.784 | 148 | 88 | 5 | 34 | 172 | 225 | 371 | 1.52e-15 | 73.9 |
| MsG0880044027.01.T01 | MTR_8g064560 | 33.103 | 145 | 87 | 5 | 36 | 171 | 480 | 623 | 3.94e-15 | 73.2 |
| MsG0880044027.01.T01 | MTR_5g034320 | 30.556 | 144 | 92 | 4 | 36 | 171 | 483 | 626 | 6.13e-14 | 69.7 |
| MsG0880044027.01.T01 | MTR_8g064530 | 31.507 | 146 | 92 | 4 | 34 | 171 | 495 | 640 | 7.98e-14 | 69.3 |
| MsG0880044027.01.T01 | MTR_4g133840 | 29.655 | 145 | 93 | 4 | 36 | 171 | 42 | 186 | 1.77e-13 | 65.9 |
| MsG0880044027.01.T01 | MTR_4g068420 | 31.061 | 132 | 72 | 6 | 48 | 173 | 2 | 120 | 3.90e-12 | 60.8 |
| MsG0880044027.01.T01 | MTR_6g086530 | 29.861 | 144 | 89 | 6 | 43 | 174 | 63 | 206 | 2.93e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044027.01.T01 | AT5G25610 | 36.788 | 193 | 97 | 7 | 4 | 171 | 197 | 389 | 3.43e-34 | 125 |
| MsG0880044027.01.T01 | AT1G49320 | 35.714 | 154 | 84 | 7 | 34 | 172 | 125 | 278 | 1.50e-20 | 86.7 |
| MsG0880044027.01.T01 | AT1G70370 | 31.250 | 144 | 91 | 4 | 36 | 171 | 479 | 622 | 2.92e-17 | 79.3 |
| MsG0880044027.01.T01 | AT1G70370 | 31.250 | 144 | 91 | 4 | 36 | 171 | 479 | 622 | 2.92e-17 | 79.3 |
| MsG0880044027.01.T01 | AT1G60390 | 31.544 | 149 | 94 | 5 | 31 | 171 | 472 | 620 | 3.57e-15 | 73.2 |
| MsG0880044027.01.T01 | AT1G23760 | 30.345 | 145 | 91 | 5 | 36 | 171 | 475 | 618 | 9.74e-15 | 72.0 |
Find 47 sgRNAs with CRISPR-Local
Find 48 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATATATTGGTCTTGGTTT+TGG | 0.131953 | 8:+34541261 | None:intergenic |
| GTAGAGGAAGTGAAGAAAAT+TGG | 0.216702 | 8:-34541239 | MsG0880044027.01.T01:CDS |
| CGAAATCTATCATTGATTCT+AGG | 0.249913 | 8:+34541333 | None:intergenic |
| AAAGCTTGGAACAAATATTA+AGG | 0.268182 | 8:-34541303 | MsG0880044027.01.T01:CDS |
| GTGTGAACCCAGCAGCTATA+GGG | 0.326521 | 8:-34541379 | MsG0880044027.01.T01:CDS |
| TTGTGTTCCCCTATAGCTGC+TGG | 0.326965 | 8:+34541371 | None:intergenic |
| TGGAAGAATAAGACAACCTT+TGG | 0.342882 | 8:-34541444 | MsG0880044027.01.T01:CDS |
| TCACTTCCTCTACTATATAT+TGG | 0.350269 | 8:+34541249 | None:intergenic |
| TGACATATTGGAATTGTTCC+AGG | 0.361803 | 8:+34541023 | None:intergenic |
| CCTCTACTATATATTGGTCT+TGG | 0.371712 | 8:+34541255 | None:intergenic |
| TTGCTAACAAAATGACATAT+TGG | 0.384980 | 8:+34541011 | None:intergenic |
| ATTTGTTCCAAGCTTTGAAA+TGG | 0.389440 | 8:+34541310 | None:intergenic |
| GATTTCGCCATTTCAAAGCT+TGG | 0.391238 | 8:-34541317 | MsG0880044027.01.T01:CDS |
| AACCTTTGGGAACATGGATA+TGG | 0.395939 | 8:-34541430 | MsG0880044027.01.T01:CDS |
| AACATACATAGTTCCTTTAG+TGG | 0.396577 | 8:-34541141 | MsG0880044027.01.T01:CDS |
| AGACTCTCTTACAACATGAT+TGG | 0.417528 | 8:+34540968 | None:intergenic |
| GGTTGTCTTATTCTTCCAAC+AGG | 0.420121 | 8:+34541449 | None:intergenic |
| GCTTCCACAAGCATTCTGAT+AGG | 0.446365 | 8:-34541475 | MsG0880044027.01.T01:CDS |
| TGTGTGAACCCAGCAGCTAT+AGG | 0.462266 | 8:-34541380 | MsG0880044027.01.T01:CDS |
| AGAACTTCATAAAGCACGTC+AGG | 0.473905 | 8:+34541056 | None:intergenic |
| GACTCTCTTACAACATGATT+GGG | 0.475130 | 8:+34540969 | None:intergenic |
| GTTCCATCAGAGGCCACTAA+AGG | 0.489886 | 8:+34541128 | None:intergenic |
| GAAATCTATCATTGATTCTA+GGG | 0.494556 | 8:+34541334 | None:intergenic |
| TGTGTTCCCCTATAGCTGCT+GGG | 0.500356 | 8:+34541372 | None:intergenic |
| GTTCCTTTAGTGGCCTCTGA+TGG | 0.500787 | 8:-34541131 | MsG0880044027.01.T01:CDS |
| TTGATGTTGCATTGACTTGG+TGG | 0.512892 | 8:+34541162 | None:intergenic |
| GAAGTTCTCAAAGTCAAGCC+TGG | 0.515439 | 8:-34541041 | MsG0880044027.01.T01:CDS |
| CCTGGAAAGAAAATGAGCTT+AGG | 0.515909 | 8:-34541497 | None:intergenic |
| TAAGACAACCTTTGGGAACA+TGG | 0.519820 | 8:-34541436 | MsG0880044027.01.T01:CDS |
| CCACCATGACACGAGAGGTA+TGG | 0.526766 | 8:-34541081 | MsG0880044027.01.T01:CDS |
| GTATCCTATCAGAATGCTTG+TGG | 0.540753 | 8:+34541471 | None:intergenic |
| ATGTTGATGTTGCATTGACT+TGG | 0.542701 | 8:+34541159 | None:intergenic |
| GGAAGAATAAGACAACCTTT+GGG | 0.545608 | 8:-34541443 | MsG0880044027.01.T01:CDS |
| CTTCGCTTTAGTTCCATCAG+AGG | 0.557690 | 8:+34541118 | None:intergenic |
| TGTGAACCCAGCAGCTATAG+GGG | 0.559123 | 8:-34541378 | MsG0880044027.01.T01:CDS |
| CATTCTGATAGGATACCTGT+TGG | 0.559391 | 8:-34541464 | MsG0880044027.01.T01:CDS |
| ATTTAGTTTATGACACATCA+CGG | 0.560330 | 8:+34541208 | None:intergenic |
| GATCCATACCTCTCGTGTCA+TGG | 0.564641 | 8:+34541078 | None:intergenic |
| CTCCATATCCATGTTCCCAA+AGG | 0.572259 | 8:+34541428 | None:intergenic |
| CTCTGATGGAACTAAAGCGA+AGG | 0.574492 | 8:-34541117 | MsG0880044027.01.T01:CDS |
| TAGCAACGAGGCCATTGCAT+GGG | 0.577381 | 8:-34540994 | MsG0880044027.01.T01:CDS |
| TTAGCAACGAGGCCATTGCA+TGG | 0.601905 | 8:-34540995 | MsG0880044027.01.T01:CDS |
| ATGATTGGGTACCCATGCAA+TGG | 0.623581 | 8:+34540983 | None:intergenic |
| CCAAGACCAATATATAGTAG+AGG | 0.626479 | 8:-34541255 | MsG0880044027.01.T01:CDS |
| CCATACCTCTCGTGTCATGG+TGG | 0.655956 | 8:+34541081 | None:intergenic |
| GACACAGATTATATGACACA+AGG | 0.694555 | 8:+34540936 | None:intergenic |
| ATATGCCACCATGACACGAG+AGG | 0.699219 | 8:-34541086 | MsG0880044027.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAGCTTGGAACAAATATTA+AGG | - | Chr8:34541126-34541145 | MsG0880044027.01.T01:CDS | 25.0% |
| ! | TTGCTAACAAAATGACATAT+TGG | + | Chr8:34541421-34541440 | None:intergenic | 25.0% |
| !! | ATTTAGTTTATGACACATCA+CGG | + | Chr8:34541224-34541243 | None:intergenic | 25.0% |
| !!! | GAAATCTATCATTGATTCTA+GGG | + | Chr8:34541098-34541117 | None:intergenic | 25.0% |
| !!! | TATATATTGGTCTTGGTTTT+GGG | + | Chr8:34541170-34541189 | None:intergenic | 25.0% |
| AACATACATAGTTCCTTTAG+TGG | - | Chr8:34541288-34541307 | MsG0880044027.01.T01:CDS | 30.0% | |
| TCACTTCCTCTACTATATAT+TGG | + | Chr8:34541183-34541202 | None:intergenic | 30.0% | |
| !! | ATTTGTTCCAAGCTTTGAAA+TGG | + | Chr8:34541122-34541141 | None:intergenic | 30.0% |
| !! | CGAAATCTATCATTGATTCT+AGG | + | Chr8:34541099-34541118 | None:intergenic | 30.0% |
| !!! | CTATATATTGGTCTTGGTTT+TGG | + | Chr8:34541171-34541190 | None:intergenic | 30.0% |
| AGACTCTCTTACAACATGAT+TGG | + | Chr8:34541464-34541483 | None:intergenic | 35.0% | |
| CCAAGACCAATATATAGTAG+AGG | - | Chr8:34541174-34541193 | MsG0880044027.01.T01:CDS | 35.0% | |
| GACTCTCTTACAACATGATT+GGG | + | Chr8:34541463-34541482 | None:intergenic | 35.0% | |
| GGAAGAATAAGACAACCTTT+GGG | - | Chr8:34540986-34541005 | MsG0880044027.01.T01:CDS | 35.0% | |
| GTAGAGGAAGTGAAGAAAAT+TGG | - | Chr8:34541190-34541209 | MsG0880044027.01.T01:CDS | 35.0% | |
| TGACATATTGGAATTGTTCC+AGG | + | Chr8:34541409-34541428 | None:intergenic | 35.0% | |
| TGGAAGAATAAGACAACCTT+TGG | - | Chr8:34540985-34541004 | MsG0880044027.01.T01:CDS | 35.0% | |
| ! | CCTCTACTATATATTGGTCT+TGG | + | Chr8:34541177-34541196 | None:intergenic | 35.0% |
| !! | ATGTTGATGTTGCATTGACT+TGG | + | Chr8:34541273-34541292 | None:intergenic | 35.0% |
| !!! | ATGTCATTTTGTTAGCAACG+AGG | - | Chr8:34541423-34541442 | MsG0880044027.01.T01:CDS | 35.0% |
| AGAACTTCATAAAGCACGTC+AGG | + | Chr8:34541376-34541395 | None:intergenic | 40.0% | |
| CATTCTGATAGGATACCTGT+TGG | - | Chr8:34540965-34540984 | MsG0880044027.01.T01:CDS | 40.0% | |
| GATTTCGCCATTTCAAAGCT+TGG | - | Chr8:34541112-34541131 | MsG0880044027.01.T01:CDS | 40.0% | |
| GTATCCTATCAGAATGCTTG+TGG | + | Chr8:34540961-34540980 | None:intergenic | 40.0% | |
| ! | AACCTTTGGGAACATGGATA+TGG | - | Chr8:34540999-34541018 | MsG0880044027.01.T01:CDS | 40.0% |
| ! | GGTTGTCTTATTCTTCCAAC+AGG | + | Chr8:34540983-34541002 | None:intergenic | 40.0% |
| ! | TAAGACAACCTTTGGGAACA+TGG | - | Chr8:34540993-34541012 | MsG0880044027.01.T01:CDS | 40.0% |
| !! | TTGATGTTGCATTGACTTGG+TGG | + | Chr8:34541270-34541289 | None:intergenic | 40.0% |
| ATGATTGGGTACCCATGCAA+TGG | + | Chr8:34541449-34541468 | None:intergenic | 45.0% | |
| CTCCATATCCATGTTCCCAA+AGG | + | Chr8:34541004-34541023 | None:intergenic | 45.0% | |
| CTCTGATGGAACTAAAGCGA+AGG | - | Chr8:34541312-34541331 | MsG0880044027.01.T01:CDS | 45.0% | |
| GAAGTTCTCAAAGTCAAGCC+TGG | - | Chr8:34541388-34541407 | MsG0880044027.01.T01:CDS | 45.0% | |
| GCTTCCACAAGCATTCTGAT+AGG | - | Chr8:34540954-34540973 | MsG0880044027.01.T01:CDS | 45.0% | |
| ! | CTTCGCTTTAGTTCCATCAG+AGG | + | Chr8:34541314-34541333 | None:intergenic | 45.0% |
| !!! | TTGGTCTTGGTTTTGGGCAA+AGG | + | Chr8:34541164-34541183 | None:intergenic | 45.0% |
| ATATGCCACCATGACACGAG+AGG | - | Chr8:34541343-34541362 | MsG0880044027.01.T01:CDS | 50.0% | |
| GATCCATACCTCTCGTGTCA+TGG | + | Chr8:34541354-34541373 | None:intergenic | 50.0% | |
| GTGTGAACCCAGCAGCTATA+GGG | - | Chr8:34541050-34541069 | MsG0880044027.01.T01:CDS | 50.0% | |
| GTTCCATCAGAGGCCACTAA+AGG | + | Chr8:34541304-34541323 | None:intergenic | 50.0% | |
| GTTCCTTTAGTGGCCTCTGA+TGG | - | Chr8:34541298-34541317 | MsG0880044027.01.T01:CDS | 50.0% | |
| TAGCAACGAGGCCATTGCAT+GGG | - | Chr8:34541435-34541454 | MsG0880044027.01.T01:CDS | 50.0% | |
| TGTGAACCCAGCAGCTATAG+GGG | - | Chr8:34541051-34541070 | MsG0880044027.01.T01:CDS | 50.0% | |
| TGTGTGAACCCAGCAGCTAT+AGG | - | Chr8:34541049-34541068 | MsG0880044027.01.T01:CDS | 50.0% | |
| TGTGTTCCCCTATAGCTGCT+GGG | + | Chr8:34541060-34541079 | None:intergenic | 50.0% | |
| TTAGCAACGAGGCCATTGCA+TGG | - | Chr8:34541434-34541453 | MsG0880044027.01.T01:CDS | 50.0% | |
| TTGTGTTCCCCTATAGCTGC+TGG | + | Chr8:34541061-34541080 | None:intergenic | 50.0% | |
| CCACCATGACACGAGAGGTA+TGG | - | Chr8:34541348-34541367 | MsG0880044027.01.T01:CDS | 55.0% | |
| CCATACCTCTCGTGTCATGG+TGG | + | Chr8:34541351-34541370 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 34540944 | 34541507 | 34540944 | ID=MsG0880044027.01;Name=MsG0880044027.01 |
| Chr8 | mRNA | 34540944 | 34541507 | 34540944 | ID=MsG0880044027.01.T01;Parent=MsG0880044027.01;Name=MsG0880044027.01.T01;_AED=0.44;_eAED=0.44;_QI=0|-1|0|1|-1|1|1|0|187 |
| Chr8 | exon | 34540944 | 34541507 | 34540944 | ID=MsG0880044027.01.T01:exon:15969;Parent=MsG0880044027.01.T01 |
| Chr8 | CDS | 34540944 | 34541507 | 34540944 | ID=MsG0880044027.01.T01:cds;Parent=MsG0880044027.01.T01 |
| Gene Sequence |
| Protein sequence |
