Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009432.01.T01 | QDC33493.1 | 84.257 | 343 | 50 | 2 | 1 | 339 | 1 | 343 | 0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009432.01.T01 | Q9MA17 | 42.746 | 386 | 150 | 14 | 2 | 339 | 9 | 371 | 1.16E-65 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009432.01.T01 | A0A6B7JI03 | 84.257 | 343 | 50 | 2 | 1 | 339 | 1 | 343 | 0.0 | 584 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0280009432.01.T01 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048595.01 | MsG0280009432.01 | 0.809000 | 2.348471e-50 | 1.362772e-47 |
| MsG0180000028.01 | MsG0280009432.01 | 0.807523 | 4.849898e-50 | 2.707301e-47 |
| MsG0180000029.01 | MsG0280009432.01 | 0.804928 | 1.706692e-49 | 8.912444e-47 |
| MsG0180000466.01 | MsG0280009432.01 | 0.820284 | 7.439510e-53 | 5.861364e-50 |
| MsG0180000497.01 | MsG0280009432.01 | 0.805257 | 1.456678e-49 | 7.670505e-47 |
| MsG0180000723.01 | MsG0280009432.01 | 0.820019 | 8.556361e-53 | 6.692519e-50 |
| MsG0180000929.01 | MsG0280009432.01 | 0.820130 | 8.069723e-53 | 6.331561e-50 |
| MsG0180001004.01 | MsG0280009432.01 | 0.802680 | 5.000603e-49 | 2.464676e-46 |
| MsG0180001029.01 | MsG0280009432.01 | 0.821503 | 3.900001e-53 | 3.178486e-50 |
| MsG0180001533.01 | MsG0280009432.01 | 0.801640 | 8.183613e-49 | 3.928127e-46 |
| MsG0180003235.01 | MsG0280009432.01 | 0.815783 | 7.745321e-52 | 5.391200e-49 |
| MsG0180003320.01 | MsG0280009432.01 | 0.800645 | 1.307499e-48 | 6.120209e-46 |
| MsG0180003322.01 | MsG0280009432.01 | 0.800731 | 1.256081e-48 | 5.892230e-46 |
| MsG0180003405.01 | MsG0280009432.01 | -0.805046 | 1.612491e-49 | 8.445538e-47 |
| MsG0180003504.01 | MsG0280009432.01 | 0.815658 | 8.257510e-52 | 5.727821e-49 |
| MsG0180004549.01 | MsG0280009432.01 | 0.820793 | 5.683636e-53 | 4.541769e-50 |
| MsG0180005267.01 | MsG0280009432.01 | 0.825753 | 3.946604e-54 | 3.629800e-51 |
| MsG0180005762.01 | MsG0280009432.01 | 0.813930 | 1.994734e-51 | 1.320087e-48 |
| MsG0280007163.01 | MsG0280009432.01 | 0.829235 | 5.765967e-55 | 5.866733e-52 |
| MsG0280007216.01 | MsG0280009432.01 | 0.805090 | 1.579060e-49 | 8.279617e-47 |
| MsG0280007426.01 | MsG0280009432.01 | 0.817449 | 3.279617e-52 | 2.389155e-49 |
| MsG0280008226.01 | MsG0280009432.01 | 0.803072 | 4.151245e-49 | 2.066457e-46 |
| MsG0280009167.01 | MsG0280009432.01 | 0.818201 | 2.218002e-52 | 1.649427e-49 |
| MsG0280009432.01 | MsG0280009770.01 | 0.815415 | 9.355553e-52 | 6.445939e-49 |
| MsG0280009432.01 | MsG0280011128.01 | 0.810868 | 9.304539e-51 | 5.673704e-48 |
| MsG0280009432.01 | MsG0280011165.01 | 0.807794 | 4.247651e-50 | 2.387889e-47 |
| MsG0280009432.01 | MsG0380011686.01 | 0.815674 | 8.192330e-52 | 5.684965e-49 |
| MsG0280009432.01 | MsG0380011701.01 | 0.806152 | 9.447908e-50 | 5.090927e-47 |
| MsG0280009432.01 | MsG0380012254.01 | 0.810899 | 9.161219e-51 | 5.591009e-48 |
| MsG0280009432.01 | MsG0380015080.01 | 0.814207 | 1.733216e-51 | 1.155658e-48 |
| MsG0280009432.01 | MsG0380015110.01 | 0.809969 | 1.454844e-50 | 8.662636e-48 |
| MsG0280009432.01 | MsG0380015369.01 | 0.822081 | 2.865945e-53 | 2.374369e-50 |
| MsG0280009432.01 | MsG0380016490.01 | 0.841299 | 5.170208e-58 | 7.563257e-55 |
| MsG0280009432.01 | MsG0380017173.01 | 0.822192 | 2.701788e-53 | 2.245413e-50 |
| MsG0280009432.01 | MsG0380017610.01 | 0.840350 | 9.166510e-58 | 1.302147e-54 |
| MsG0280009432.01 | MsG0380017637.01 | 0.807170 | 5.760749e-50 | 3.186356e-47 |
| MsG0280009432.01 | MsG0380017901.01 | 0.815190 | 1.049833e-51 | 7.188515e-49 |
| MsG0280009432.01 | MsG0480018362.01 | 0.827575 | 1.450709e-54 | 1.405969e-51 |
| MsG0280009432.01 | MsG0480019146.01 | 0.810768 | 9.781432e-51 | 5.948427e-48 |
| MsG0280009432.01 | MsG0480019171.01 | 0.811064 | 8.438740e-51 | 5.172468e-48 |
| MsG0280009432.01 | MsG0480019217.01 | 0.835669 | 1.466953e-56 | 1.806248e-53 |
| MsG0280009432.01 | MsG0480019663.01 | 0.844212 | 8.697256e-59 | 1.394236e-55 |
| MsG0280009432.01 | MsG0480019817.01 | 0.824433 | 8.092698e-54 | 7.166793e-51 |
| MsG0280009432.01 | MsG0480019818.01 | 0.847516 | 1.100464e-59 | 1.961078e-56 |
| MsG0280009432.01 | MsG0480020810.01 | 0.810486 | 1.125686e-50 | 6.793924e-48 |
| MsG0280009432.01 | MsG0480020904.01 | 0.817921 | 2.566193e-52 | 1.893806e-49 |
| MsG0280009432.01 | MsG0480021227.01 | 0.813311 | 2.728849e-51 | 1.775933e-48 |
| MsG0280009432.01 | MsG0480021231.01 | 0.828139 | 1.061336e-54 | 1.045802e-51 |
| MsG0280009432.01 | MsG0480021236.01 | 0.804597 | 2.001494e-49 | 1.036198e-46 |
| MsG0280009432.01 | MsG0480021433.01 | 0.805492 | 1.300537e-49 | 6.890023e-47 |
| MsG0280009432.01 | MsG0480022311.01 | 0.822619 | 2.150594e-53 | 1.809525e-50 |
| MsG0280009432.01 | MsG0480022833.01 | 0.805406 | 1.355710e-49 | 7.166595e-47 |
| MsG0280009432.01 | MsG0480023067.01 | 0.801262 | 9.783030e-49 | 4.651365e-46 |
| MsG0280009432.01 | MsG0480023528.01 | 0.800513 | 1.391504e-48 | 6.491495e-46 |
| MsG0280009432.01 | MsG0580024207.01 | 0.804978 | 1.666155e-49 | 8.711649e-47 |
| MsG0280009432.01 | MsG0580024980.01 | 0.836490 | 9.079109e-57 | 1.145872e-53 |
| MsG0280009432.01 | MsG0580025633.01 | 0.830748 | 2.466151e-55 | 2.622066e-52 |
| MsG0280009432.01 | MsG0580026019.01 | 0.802805 | 4.713710e-49 | 2.330798e-46 |
| MsG0280009432.01 | MsG0580026492.01 | 0.828393 | 9.218387e-55 | 9.151049e-52 |
| MsG0280009432.01 | MsG0580026521.01 | 0.806395 | 8.399817e-50 | 4.554009e-47 |
| MsG0280009432.01 | MsG0580028490.01 | 0.800621 | 1.322882e-48 | 6.188305e-46 |
| MsG0280009432.01 | MsG0580029158.01 | 0.813248 | 2.818006e-51 | 1.830663e-48 |
| MsG0280009432.01 | MsG0580029218.01 | 0.802877 | 4.553343e-49 | 2.255525e-46 |
| MsG0280009432.01 | MsG0580029696.01 | 0.801486 | 8.801786e-49 | 4.208551e-46 |
| MsG0280009432.01 | MsG0680030613.01 | 0.828708 | 7.737167e-55 | 7.750900e-52 |
| MsG0280009432.01 | MsG0680031009.01 | 0.803451 | 3.463808e-49 | 1.741250e-46 |
| MsG0280009432.01 | MsG0680031200.01 | 0.814147 | 1.786827e-51 | 1.189503e-48 |
| MsG0280009432.01 | MsG0680032932.01 | 0.821679 | 3.550904e-53 | 2.908541e-50 |
| MsG0280009432.01 | MsG0680034238.01 | 0.808072 | 3.706800e-50 | 2.099090e-47 |
| MsG0280009432.01 | MsG0680034316.01 | 0.835040 | 2.114541e-56 | 2.555011e-53 |
| MsG0280009432.01 | MsG0680034317.01 | 0.807812 | 4.210295e-50 | 2.367964e-47 |
| MsG0280009432.01 | MsG0780035930.01 | 0.808854 | 2.524373e-50 | 1.459140e-47 |
| MsG0280009432.01 | MsG0780036661.01 | 0.805031 | 1.624353e-49 | 8.504078e-47 |
| MsG0280009432.01 | MsG0780038305.01 | 0.811428 | 7.036620e-51 | 4.354698e-48 |
| MsG0280009432.01 | MsG0780038657.01 | 0.800015 | 1.756678e-48 | 8.092169e-46 |
| MsG0280009432.01 | MsG0780039373.01 | 0.803746 | 3.009087e-49 | 1.524152e-46 |
| MsG0280009432.01 | MsG0780039619.01 | 0.813483 | 2.502330e-51 | 1.636186e-48 |
| MsG0280009432.01 | MsG0780040716.01 | 0.811490 | 6.822268e-51 | 4.228919e-48 |
| MsG0280009432.01 | MsG0780040808.01 | 0.814080 | 1.847958e-51 | 1.227995e-48 |
| MsG0280009432.01 | MsG0780040977.01 | 0.801320 | 9.520128e-49 | 4.532971e-46 |
| MsG0280009432.01 | MsG0780041248.01 | 0.822600 | 2.171848e-53 | 1.826459e-50 |
| MsG0280009432.01 | MsG0780041317.01 | 0.801635 | 8.204304e-49 | 3.937552e-46 |
| MsG0280009432.01 | MsG0780041436.01 | 0.806742 | 7.097183e-50 | 3.882262e-47 |
| MsG0280009432.01 | MsG0880042591.01 | 0.823354 | 1.449075e-53 | 1.244641e-50 |
| MsG0280009432.01 | MsG0880042740.01 | 0.821997 | 2.998439e-53 | 2.478239e-50 |
| MsG0280009432.01 | MsG0880043550.01 | 0.830629 | 2.637291e-55 | 2.794098e-52 |
| MsG0280009432.01 | MsG0880043882.01 | 0.830769 | 2.437328e-55 | 2.593063e-52 |
| MsG0280009432.01 | MsG0880043998.01 | 0.807287 | 5.441313e-50 | 3.018934e-47 |
| MsG0280009432.01 | MsG0880044027.01 | 0.803598 | 3.228861e-49 | 1.629347e-46 |
| MsG0280009432.01 | MsG0880044712.01 | 0.845624 | 3.615058e-59 | 6.060406e-56 |
| MsG0280009432.01 | MsG0880046010.01 | -0.802315 | 5.947226e-49 | 2.904323e-46 |
| MsG0280009432.01 | MsG0880046829.01 | 0.834412 | 3.042400e-56 | 3.607885e-53 |
| MsG0280009432.01 | MsG0880046870.01 | 0.841773 | 3.876901e-58 | 5.756234e-55 |
| MsG0280009432.01 | MsG0880047085.01 | 0.804835 | 1.784666e-49 | 9.297215e-47 |
| MsG0280009432.01 | MsG0880047664.01 | 0.801149 | 1.031701e-48 | 4.891419e-46 |
| MsG0280009432.01 | MsG0880047697.01 | 0.812123 | 4.965958e-51 | 3.130753e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009432.01.T01 | MTR_2g062730 | 83.478 | 345 | 50 | 5 | 1 | 339 | 1 | 344 | 0.0 | 558 |
| MsG0280009432.01.T01 | MTR_5g021710 | 39.286 | 252 | 122 | 6 | 5 | 234 | 3 | 245 | 1.42e-46 | 161 |
| MsG0280009432.01.T01 | MTR_4g035590 | 51.553 | 161 | 56 | 3 | 10 | 158 | 8 | 158 | 9.44e-44 | 154 |
| MsG0280009432.01.T01 | MTR_8g024480 | 47.458 | 177 | 61 | 3 | 5 | 158 | 10 | 177 | 7.46e-43 | 154 |
| MsG0280009432.01.T01 | MTR_4g101680 | 36.076 | 316 | 139 | 10 | 10 | 287 | 7 | 297 | 1.19e-41 | 149 |
| MsG0280009432.01.T01 | MTR_4g036030 | 46.914 | 162 | 65 | 2 | 10 | 159 | 7 | 159 | 4.75e-40 | 144 |
| MsG0280009432.01.T01 | MTR_8g076110 | 34.602 | 289 | 153 | 6 | 7 | 288 | 3 | 262 | 8.53e-40 | 142 |
| MsG0280009432.01.T01 | MTR_5g012080 | 45.679 | 162 | 65 | 4 | 10 | 157 | 7 | 159 | 1.39e-37 | 137 |
| MsG0280009432.01.T01 | MTR_1g096430 | 31.285 | 358 | 185 | 9 | 7 | 329 | 4 | 335 | 1.04e-33 | 127 |
| MsG0280009432.01.T01 | MTR_3g088110 | 40.000 | 160 | 90 | 2 | 5 | 159 | 2 | 160 | 7.38e-32 | 121 |
| MsG0280009432.01.T01 | MTR_2g080010 | 32.877 | 219 | 131 | 3 | 4 | 206 | 9 | 227 | 8.51e-31 | 119 |
| MsG0280009432.01.T01 | MTR_6g084430 | 38.365 | 159 | 98 | 0 | 7 | 165 | 2 | 160 | 2.60e-30 | 117 |
| MsG0280009432.01.T01 | MTR_3g109340 | 35.583 | 163 | 103 | 1 | 3 | 163 | 15 | 177 | 4.09e-30 | 118 |
| MsG0280009432.01.T01 | MTR_7g085220 | 35.028 | 177 | 82 | 4 | 4 | 156 | 2 | 169 | 5.15e-30 | 117 |
| MsG0280009432.01.T01 | MTR_3g064580 | 39.610 | 154 | 88 | 2 | 8 | 156 | 4 | 157 | 6.77e-30 | 120 |
| MsG0280009432.01.T01 | MTR_5g076850 | 39.869 | 153 | 88 | 2 | 8 | 156 | 4 | 156 | 2.88e-29 | 118 |
| MsG0280009432.01.T01 | MTR_6g477900 | 40.909 | 154 | 85 | 3 | 8 | 156 | 4 | 156 | 4.18e-29 | 112 |
| MsG0280009432.01.T01 | MTR_2g064090 | 38.312 | 154 | 90 | 2 | 8 | 156 | 4 | 157 | 8.67e-29 | 114 |
| MsG0280009432.01.T01 | MTR_3g109340 | 35.583 | 163 | 102 | 2 | 4 | 163 | 16 | 178 | 9.91e-29 | 114 |
| MsG0280009432.01.T01 | MTR_5g014300 | 30.466 | 279 | 157 | 9 | 6 | 256 | 2 | 271 | 1.26e-28 | 113 |
| MsG0280009432.01.T01 | MTR_3g096920 | 38.854 | 157 | 90 | 2 | 6 | 157 | 3 | 158 | 1.47e-28 | 112 |
| MsG0280009432.01.T01 | MTR_7g005280 | 34.574 | 188 | 110 | 4 | 1 | 185 | 6 | 183 | 1.71e-28 | 111 |
| MsG0280009432.01.T01 | MTR_1g008740 | 37.888 | 161 | 96 | 3 | 7 | 163 | 10 | 170 | 3.29e-28 | 112 |
| MsG0280009432.01.T01 | MTR_1g008740 | 37.888 | 161 | 96 | 3 | 7 | 163 | 24 | 184 | 6.07e-28 | 112 |
| MsG0280009432.01.T01 | MTR_4g081870 | 33.505 | 194 | 122 | 2 | 2 | 189 | 1 | 193 | 2.52e-27 | 108 |
| MsG0280009432.01.T01 | MTR_8g059170 | 39.394 | 165 | 93 | 2 | 7 | 167 | 11 | 172 | 4.24e-27 | 109 |
| MsG0280009432.01.T01 | MTR_6g011860 | 34.524 | 168 | 98 | 3 | 12 | 167 | 17 | 184 | 4.54e-27 | 110 |
| MsG0280009432.01.T01 | MTR_8g094580 | 37.500 | 168 | 96 | 3 | 2 | 163 | 1 | 165 | 5.92e-27 | 107 |
| MsG0280009432.01.T01 | MTR_4g108760 | 35.849 | 159 | 98 | 1 | 7 | 161 | 14 | 172 | 1.24e-26 | 108 |
| MsG0280009432.01.T01 | MTR_3g435150 | 37.736 | 159 | 85 | 3 | 7 | 156 | 13 | 166 | 1.38e-26 | 107 |
| MsG0280009432.01.T01 | MTR_4g098630 | 37.037 | 162 | 92 | 4 | 2 | 156 | 1 | 159 | 4.81e-26 | 106 |
| MsG0280009432.01.T01 | MTR_2g079990 | 38.415 | 164 | 96 | 2 | 6 | 167 | 12 | 172 | 5.05e-26 | 106 |
| MsG0280009432.01.T01 | MTR_7g100990 | 35.088 | 171 | 103 | 2 | 7 | 169 | 8 | 178 | 1.48e-25 | 105 |
| MsG0280009432.01.T01 | MTR_2g078700 | 39.375 | 160 | 83 | 4 | 10 | 159 | 23 | 178 | 1.75e-25 | 105 |
| MsG0280009432.01.T01 | MTR_3g096920 | 38.514 | 148 | 90 | 1 | 6 | 153 | 3 | 149 | 1.87e-25 | 104 |
| MsG0280009432.01.T01 | MTR_5g041940 | 34.783 | 184 | 112 | 3 | 8 | 185 | 1 | 182 | 3.14e-25 | 102 |
| MsG0280009432.01.T01 | MTR_8g467490 | 35.000 | 160 | 91 | 3 | 12 | 158 | 16 | 175 | 4.38e-25 | 104 |
| MsG0280009432.01.T01 | MTR_3g070030 | 37.580 | 157 | 93 | 2 | 7 | 158 | 16 | 172 | 4.63e-25 | 103 |
| MsG0280009432.01.T01 | MTR_4g089135 | 32.778 | 180 | 88 | 3 | 10 | 159 | 15 | 191 | 9.38e-25 | 103 |
| MsG0280009432.01.T01 | MTR_6g012670 | 34.146 | 164 | 104 | 1 | 2 | 161 | 12 | 175 | 4.89e-24 | 100 |
| MsG0280009432.01.T01 | MTR_2157s0010 | 34.161 | 161 | 92 | 2 | 10 | 156 | 8 | 168 | 5.86e-24 | 99.4 |
| MsG0280009432.01.T01 | MTR_5g040420 | 31.720 | 186 | 113 | 4 | 9 | 182 | 13 | 196 | 9.93e-24 | 100 |
| MsG0280009432.01.T01 | MTR_1g069805 | 36.601 | 153 | 93 | 3 | 9 | 159 | 9 | 159 | 1.18e-23 | 98.6 |
| MsG0280009432.01.T01 | MTR_2g093810 | 35.897 | 156 | 92 | 2 | 9 | 156 | 13 | 168 | 6.26e-23 | 97.8 |
| MsG0280009432.01.T01 | MTR_8g063550 | 29.911 | 224 | 130 | 6 | 12 | 218 | 8 | 221 | 9.02e-23 | 97.4 |
| MsG0280009432.01.T01 | MTR_8g063550 | 29.911 | 224 | 130 | 6 | 12 | 218 | 8 | 221 | 1.08e-22 | 98.6 |
| MsG0280009432.01.T01 | MTR_3g096140 | 33.548 | 155 | 89 | 3 | 12 | 157 | 9 | 158 | 1.09e-22 | 96.3 |
| MsG0280009432.01.T01 | MTR_3g070040 | 37.179 | 156 | 85 | 3 | 14 | 161 | 12 | 162 | 1.16e-22 | 97.1 |
| MsG0280009432.01.T01 | MTR_2g079990 | 33.333 | 192 | 95 | 2 | 6 | 167 | 12 | 200 | 1.29e-22 | 97.8 |
| MsG0280009432.01.T01 | MTR_8g099750 | 31.551 | 187 | 115 | 5 | 6 | 182 | 10 | 193 | 1.87e-22 | 94.4 |
| MsG0280009432.01.T01 | MTR_5g090970 | 33.146 | 178 | 100 | 5 | 9 | 170 | 17 | 191 | 2.30e-22 | 95.9 |
| MsG0280009432.01.T01 | MTR_8g063550 | 29.911 | 224 | 130 | 6 | 12 | 218 | 8 | 221 | 2.45e-22 | 97.4 |
| MsG0280009432.01.T01 | MTR_5g090970 | 32.022 | 178 | 103 | 4 | 9 | 170 | 17 | 192 | 2.53e-22 | 95.9 |
| MsG0280009432.01.T01 | MTR_1g090723 | 34.807 | 181 | 84 | 7 | 12 | 170 | 10 | 178 | 3.75e-22 | 97.8 |
| MsG0280009432.01.T01 | MTR_3g096140 | 33.548 | 155 | 89 | 3 | 12 | 157 | 9 | 158 | 4.57e-22 | 95.9 |
| MsG0280009432.01.T01 | MTR_7g097090 | 36.486 | 148 | 90 | 3 | 9 | 154 | 9 | 154 | 5.51e-22 | 94.4 |
| MsG0280009432.01.T01 | MTR_2g068880 | 33.529 | 170 | 94 | 4 | 6 | 156 | 17 | 186 | 5.59e-22 | 94.7 |
| MsG0280009432.01.T01 | MTR_6g032770 | 36.478 | 159 | 91 | 3 | 8 | 158 | 16 | 172 | 7.06e-22 | 95.5 |
| MsG0280009432.01.T01 | MTR_8g093580 | 29.825 | 228 | 125 | 6 | 12 | 218 | 8 | 221 | 1.39e-21 | 95.5 |
| MsG0280009432.01.T01 | MTR_1g090720 | 36.111 | 180 | 93 | 5 | 9 | 170 | 41 | 216 | 1.63e-21 | 95.5 |
| MsG0280009432.01.T01 | MTR_3g093040 | 34.545 | 165 | 84 | 4 | 8 | 158 | 106 | 260 | 2.76e-21 | 92.8 |
| MsG0280009432.01.T01 | MTR_2g068920 | 31.285 | 179 | 104 | 4 | 10 | 169 | 20 | 198 | 2.77e-21 | 92.4 |
| MsG0280009432.01.T01 | MTR_7g085260 | 35.669 | 157 | 93 | 2 | 8 | 156 | 15 | 171 | 4.44e-21 | 93.2 |
| MsG0280009432.01.T01 | MTR_1g090723 | 33.889 | 180 | 86 | 7 | 12 | 170 | 10 | 177 | 6.29e-21 | 94.4 |
| MsG0280009432.01.T01 | MTR_1g090723 | 33.889 | 180 | 86 | 7 | 12 | 170 | 10 | 177 | 7.32e-21 | 94.0 |
| MsG0280009432.01.T01 | MTR_4g134460 | 34.228 | 149 | 97 | 1 | 9 | 156 | 53 | 201 | 1.12e-20 | 92.8 |
| MsG0280009432.01.T01 | MTR_7g011130 | 28.767 | 219 | 136 | 3 | 13 | 211 | 22 | 240 | 2.66e-20 | 90.9 |
| MsG0280009432.01.T01 | MTR_3g116070 | 39.394 | 132 | 77 | 2 | 7 | 135 | 20 | 151 | 2.82e-20 | 90.9 |
| MsG0280009432.01.T01 | MTR_7g011120 | 35.032 | 157 | 91 | 2 | 13 | 158 | 11 | 167 | 3.58e-20 | 89.7 |
| MsG0280009432.01.T01 | MTR_2g086880 | 38.667 | 150 | 82 | 4 | 12 | 159 | 20 | 161 | 6.07e-20 | 90.9 |
| MsG0280009432.01.T01 | MTR_4g075980 | 34.356 | 163 | 101 | 3 | 12 | 171 | 17 | 176 | 6.19e-20 | 89.0 |
| MsG0280009432.01.T01 | MTR_1g097300 | 35.099 | 151 | 90 | 3 | 12 | 156 | 21 | 169 | 6.34e-20 | 90.9 |
| MsG0280009432.01.T01 | MTR_2g086880 | 38.667 | 150 | 82 | 4 | 12 | 159 | 20 | 161 | 1.04e-19 | 90.5 |
| MsG0280009432.01.T01 | MTR_4g094302 | 32.919 | 161 | 82 | 4 | 10 | 156 | 11 | 159 | 1.47e-18 | 82.8 |
| MsG0280009432.01.T01 | MTR_4g094302 | 35.606 | 132 | 67 | 3 | 10 | 135 | 11 | 130 | 3.81e-16 | 75.1 |
| MsG0280009432.01.T01 | MTR_3g096140 | 29.078 | 141 | 86 | 3 | 26 | 157 | 2 | 137 | 1.48e-13 | 70.9 |
| MsG0280009432.01.T01 | MTR_7g070150 | 46.667 | 60 | 24 | 2 | 110 | 162 | 12 | 70 | 1.99e-11 | 60.1 |
| MsG0280009432.01.T01 | MTR_8g093790 | 29.560 | 159 | 90 | 6 | 1 | 157 | 1 | 139 | 2.25e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009432.01.T01 | AT1G79580 | 42.746 | 386 | 150 | 14 | 2 | 339 | 9 | 371 | 1.18e-66 | 214 |
| MsG0280009432.01.T01 | AT1G79580 | 42.746 | 386 | 150 | 14 | 2 | 339 | 9 | 371 | 1.18e-66 | 214 |
| MsG0280009432.01.T01 | AT1G79580 | 42.746 | 386 | 150 | 14 | 2 | 339 | 9 | 371 | 1.18e-66 | 214 |
| MsG0280009432.01.T01 | AT1G79580 | 42.746 | 386 | 150 | 14 | 2 | 339 | 9 | 371 | 1.18e-66 | 214 |
| MsG0280009432.01.T01 | AT1G79580 | 42.746 | 386 | 150 | 14 | 2 | 339 | 9 | 371 | 1.18e-66 | 214 |
| MsG0280009432.01.T01 | AT4G10350 | 37.273 | 330 | 172 | 9 | 2 | 309 | 1 | 317 | 7.54e-51 | 172 |
| MsG0280009432.01.T01 | AT2G18060 | 35.443 | 316 | 160 | 9 | 2 | 288 | 1 | 301 | 7.00e-49 | 168 |
| MsG0280009432.01.T01 | AT2G18060 | 35.443 | 316 | 160 | 9 | 2 | 288 | 1 | 301 | 7.00e-49 | 168 |
| MsG0280009432.01.T01 | AT4G36160 | 36.278 | 317 | 145 | 9 | 9 | 288 | 9 | 305 | 1.65e-47 | 164 |
| MsG0280009432.01.T01 | AT4G36160 | 36.278 | 317 | 145 | 9 | 9 | 288 | 9 | 305 | 1.65e-47 | 164 |
| MsG0280009432.01.T01 | AT4G36160 | 36.278 | 317 | 145 | 9 | 9 | 288 | 13 | 309 | 2.10e-47 | 164 |
| MsG0280009432.01.T01 | AT1G33280 | 49.068 | 161 | 60 | 3 | 10 | 158 | 8 | 158 | 2.51e-42 | 149 |
| MsG0280009432.01.T01 | AT1G32770 | 34.483 | 319 | 140 | 8 | 5 | 286 | 11 | 297 | 6.10e-42 | 149 |
| MsG0280009432.01.T01 | AT2G46770 | 42.857 | 189 | 72 | 4 | 6 | 167 | 12 | 191 | 7.20e-40 | 144 |
| MsG0280009432.01.T01 | AT1G12260 | 45.625 | 160 | 66 | 2 | 10 | 157 | 7 | 157 | 6.99e-39 | 141 |
| MsG0280009432.01.T01 | AT1G12260 | 45.625 | 160 | 66 | 2 | 10 | 157 | 7 | 157 | 1.14e-38 | 142 |
| MsG0280009432.01.T01 | AT3G61910 | 44.444 | 180 | 64 | 4 | 6 | 158 | 7 | 177 | 3.13e-38 | 139 |
| MsG0280009432.01.T01 | AT1G62700 | 45.625 | 160 | 66 | 2 | 10 | 157 | 7 | 157 | 2.25e-37 | 138 |
| MsG0280009432.01.T01 | AT1G62700 | 45.625 | 160 | 66 | 2 | 10 | 157 | 7 | 157 | 2.25e-37 | 138 |
| MsG0280009432.01.T01 | AT5G62380 | 42.675 | 157 | 87 | 1 | 10 | 163 | 7 | 163 | 1.51e-36 | 135 |
| MsG0280009432.01.T01 | AT5G62380 | 42.675 | 157 | 87 | 1 | 10 | 163 | 7 | 163 | 1.51e-36 | 135 |
| MsG0280009432.01.T01 | AT1G71930 | 35.622 | 233 | 130 | 6 | 9 | 223 | 8 | 238 | 8.43e-36 | 132 |
| MsG0280009432.01.T01 | AT1G71930 | 35.622 | 233 | 130 | 6 | 9 | 223 | 8 | 238 | 8.43e-36 | 132 |
| MsG0280009432.01.T01 | AT5G66300 | 32.372 | 312 | 148 | 11 | 9 | 291 | 11 | 288 | 3.13e-35 | 130 |
| MsG0280009432.01.T01 | AT1G77450 | 37.356 | 174 | 103 | 2 | 1 | 169 | 1 | 173 | 2.19e-32 | 121 |
| MsG0280009432.01.T01 | AT1G54330 | 41.060 | 151 | 86 | 2 | 8 | 156 | 4 | 153 | 8.54e-32 | 121 |
| MsG0280009432.01.T01 | AT1G65910 | 36.872 | 179 | 105 | 3 | 8 | 182 | 4 | 178 | 1.56e-31 | 125 |
| MsG0280009432.01.T01 | AT1G01720 | 37.853 | 177 | 95 | 3 | 8 | 170 | 5 | 180 | 9.79e-31 | 118 |
| MsG0280009432.01.T01 | AT3G17730 | 39.634 | 164 | 93 | 3 | 8 | 166 | 4 | 166 | 4.78e-30 | 115 |
| MsG0280009432.01.T01 | AT5G17260 | 39.610 | 154 | 88 | 2 | 8 | 156 | 4 | 157 | 8.13e-29 | 116 |
| MsG0280009432.01.T01 | AT2G24430 | 39.264 | 163 | 90 | 4 | 7 | 163 | 13 | 172 | 1.89e-28 | 112 |
| MsG0280009432.01.T01 | AT2G24430 | 39.264 | 163 | 90 | 4 | 7 | 163 | 13 | 172 | 1.89e-28 | 112 |
| MsG0280009432.01.T01 | AT3G03200 | 40.260 | 154 | 87 | 2 | 8 | 156 | 4 | 157 | 2.57e-28 | 115 |
| MsG0280009432.01.T01 | AT5G08790 | 39.024 | 164 | 92 | 3 | 7 | 163 | 4 | 166 | 4.07e-28 | 111 |
| MsG0280009432.01.T01 | AT5G61430 | 38.312 | 154 | 91 | 1 | 7 | 156 | 13 | 166 | 4.33e-28 | 112 |
| MsG0280009432.01.T01 | AT5G07680 | 39.869 | 153 | 88 | 1 | 8 | 156 | 1 | 153 | 6.11e-28 | 111 |
| MsG0280009432.01.T01 | AT5G07680 | 39.610 | 154 | 89 | 1 | 7 | 156 | 14 | 167 | 6.45e-28 | 111 |
| MsG0280009432.01.T01 | AT5G63790 | 36.047 | 172 | 102 | 2 | 6 | 170 | 56 | 226 | 7.29e-28 | 111 |
| MsG0280009432.01.T01 | AT5G63790 | 36.047 | 172 | 102 | 2 | 6 | 170 | 46 | 216 | 7.70e-28 | 110 |
| MsG0280009432.01.T01 | AT5G39610 | 36.646 | 161 | 98 | 1 | 1 | 157 | 11 | 171 | 7.76e-28 | 110 |
| MsG0280009432.01.T01 | AT1G69490 | 35.542 | 166 | 101 | 1 | 2 | 161 | 1 | 166 | 1.15e-27 | 109 |
| MsG0280009432.01.T01 | AT2G43000 | 37.255 | 153 | 93 | 1 | 12 | 161 | 20 | 172 | 1.15e-27 | 109 |
| MsG0280009432.01.T01 | AT2G33480 | 37.952 | 166 | 86 | 4 | 2 | 160 | 7 | 162 | 4.02e-27 | 108 |
| MsG0280009432.01.T01 | AT3G04070 | 35.227 | 176 | 100 | 2 | 1 | 162 | 1 | 176 | 4.03e-27 | 109 |
| MsG0280009432.01.T01 | AT1G61110 | 34.078 | 179 | 103 | 2 | 4 | 167 | 10 | 188 | 8.16e-27 | 108 |
| MsG0280009432.01.T01 | AT1G76420 | 38.562 | 153 | 91 | 2 | 7 | 156 | 19 | 171 | 1.35e-26 | 108 |
| MsG0280009432.01.T01 | AT2G33480 | 38.690 | 168 | 84 | 5 | 2 | 160 | 7 | 164 | 1.38e-26 | 106 |
| MsG0280009432.01.T01 | AT3G10490 | 35.359 | 181 | 88 | 5 | 9 | 170 | 26 | 196 | 1.54e-26 | 105 |
| MsG0280009432.01.T01 | AT3G15510 | 28.692 | 237 | 126 | 6 | 14 | 213 | 21 | 251 | 5.51e-26 | 107 |
| MsG0280009432.01.T01 | AT3G18400 | 31.923 | 260 | 142 | 6 | 7 | 237 | 2 | 255 | 5.94e-26 | 105 |
| MsG0280009432.01.T01 | AT3G10480 | 37.725 | 167 | 75 | 5 | 9 | 158 | 26 | 180 | 9.96e-26 | 107 |
| MsG0280009432.01.T01 | AT3G04070 | 33.333 | 192 | 98 | 3 | 1 | 162 | 1 | 192 | 1.63e-25 | 105 |
| MsG0280009432.01.T01 | AT1G26870 | 34.756 | 164 | 88 | 3 | 12 | 159 | 18 | 178 | 2.44e-25 | 105 |
| MsG0280009432.01.T01 | AT5G13180 | 37.179 | 156 | 92 | 3 | 5 | 157 | 9 | 161 | 2.70e-25 | 102 |
| MsG0280009432.01.T01 | AT4G27410 | 36.313 | 179 | 108 | 3 | 7 | 183 | 11 | 185 | 2.94e-25 | 103 |
| MsG0280009432.01.T01 | AT3G29035 | 36.943 | 157 | 95 | 1 | 2 | 154 | 16 | 172 | 4.04e-25 | 103 |
| MsG0280009432.01.T01 | AT3G10490 | 36.313 | 179 | 71 | 5 | 4 | 158 | 21 | 180 | 5.57e-25 | 105 |
| MsG0280009432.01.T01 | AT5G18270 | 29.032 | 310 | 177 | 10 | 4 | 275 | 14 | 318 | 6.70e-25 | 103 |
| MsG0280009432.01.T01 | AT5G09330 | 30.769 | 221 | 140 | 5 | 6 | 215 | 2 | 220 | 6.92e-25 | 105 |
| MsG0280009432.01.T01 | AT5G09330 | 30.769 | 221 | 140 | 5 | 6 | 215 | 2 | 220 | 6.92e-25 | 105 |
| MsG0280009432.01.T01 | AT5G09330 | 30.769 | 221 | 140 | 5 | 6 | 215 | 2 | 220 | 6.92e-25 | 105 |
| MsG0280009432.01.T01 | AT5G09330 | 30.769 | 221 | 140 | 5 | 6 | 215 | 2 | 220 | 6.92e-25 | 105 |
| MsG0280009432.01.T01 | AT5G09330 | 30.769 | 221 | 140 | 5 | 6 | 215 | 2 | 220 | 6.92e-25 | 105 |
| MsG0280009432.01.T01 | AT3G04060 | 38.365 | 159 | 83 | 4 | 8 | 156 | 18 | 171 | 7.67e-25 | 103 |
| MsG0280009432.01.T01 | AT5G39820 | 32.955 | 176 | 93 | 3 | 9 | 159 | 19 | 194 | 8.96e-25 | 103 |
| MsG0280009432.01.T01 | AT3G15500 | 36.129 | 155 | 97 | 1 | 7 | 159 | 11 | 165 | 9.45e-25 | 102 |
| MsG0280009432.01.T01 | AT5G18270 | 29.032 | 310 | 177 | 10 | 4 | 275 | 14 | 318 | 1.10e-24 | 102 |
| MsG0280009432.01.T01 | AT2G18060 | 34.715 | 193 | 103 | 6 | 113 | 288 | 27 | 213 | 1.42e-24 | 101 |
| MsG0280009432.01.T01 | AT4G10350 | 34.034 | 238 | 129 | 7 | 89 | 309 | 44 | 270 | 1.53e-24 | 101 |
| MsG0280009432.01.T01 | AT5G53950 | 37.419 | 155 | 87 | 3 | 10 | 156 | 17 | 169 | 1.68e-24 | 102 |
| MsG0280009432.01.T01 | AT3G10500 | 33.540 | 161 | 102 | 3 | 4 | 159 | 2 | 162 | 1.72e-24 | 104 |
| MsG0280009432.01.T01 | AT1G52890 | 36.129 | 155 | 97 | 1 | 7 | 159 | 11 | 165 | 1.85e-24 | 102 |
| MsG0280009432.01.T01 | AT5G46590 | 38.125 | 160 | 87 | 4 | 6 | 156 | 2 | 158 | 2.42e-24 | 100 |
| MsG0280009432.01.T01 | AT3G15170 | 36.478 | 159 | 95 | 2 | 7 | 159 | 17 | 175 | 3.49e-24 | 100 |
| MsG0280009432.01.T01 | AT5G04410 | 34.783 | 161 | 100 | 3 | 4 | 159 | 2 | 162 | 3.64e-24 | 103 |
| MsG0280009432.01.T01 | AT3G10480 | 37.725 | 167 | 74 | 6 | 9 | 158 | 26 | 179 | 5.52e-24 | 102 |
| MsG0280009432.01.T01 | AT4G27410 | 34.184 | 196 | 106 | 5 | 7 | 183 | 11 | 202 | 1.41e-23 | 99.4 |
| MsG0280009432.01.T01 | AT3G10480 | 33.010 | 206 | 92 | 6 | 9 | 170 | 26 | 229 | 3.18e-23 | 100 |
| MsG0280009432.01.T01 | AT1G52880 | 33.129 | 163 | 95 | 2 | 14 | 162 | 21 | 183 | 3.85e-23 | 98.2 |
| MsG0280009432.01.T01 | AT4G17980 | 36.646 | 161 | 90 | 5 | 6 | 156 | 2 | 160 | 9.04e-23 | 96.3 |
| MsG0280009432.01.T01 | AT4G17980 | 36.646 | 161 | 90 | 5 | 6 | 156 | 2 | 160 | 1.41e-22 | 96.3 |
| MsG0280009432.01.T01 | AT5G46590 | 39.161 | 143 | 78 | 3 | 6 | 142 | 2 | 141 | 2.42e-22 | 95.5 |
| MsG0280009432.01.T01 | AT1G33060 | 34.132 | 167 | 104 | 3 | 9 | 169 | 23 | 189 | 1.50e-21 | 96.3 |
| MsG0280009432.01.T01 | AT1G33060 | 34.132 | 167 | 104 | 3 | 9 | 169 | 23 | 189 | 1.71e-21 | 95.9 |
| MsG0280009432.01.T01 | AT1G32510 | 33.333 | 159 | 94 | 3 | 10 | 156 | 6 | 164 | 3.97e-21 | 92.0 |
| MsG0280009432.01.T01 | AT2G17040 | 33.951 | 162 | 101 | 3 | 12 | 170 | 8 | 166 | 8.60e-21 | 90.9 |
| MsG0280009432.01.T01 | AT2G27300 | 34.591 | 159 | 98 | 2 | 12 | 169 | 16 | 169 | 9.61e-21 | 91.7 |
| MsG0280009432.01.T01 | AT2G02450 | 31.351 | 185 | 102 | 3 | 10 | 186 | 51 | 218 | 1.39e-20 | 92.0 |
| MsG0280009432.01.T01 | AT1G56010 | 33.333 | 156 | 98 | 2 | 7 | 156 | 16 | 171 | 1.86e-20 | 90.9 |
| MsG0280009432.01.T01 | AT2G02450 | 31.351 | 185 | 102 | 3 | 10 | 186 | 51 | 218 | 1.99e-20 | 92.0 |
| MsG0280009432.01.T01 | AT5G04395 | 34.756 | 164 | 77 | 5 | 1 | 141 | 19 | 175 | 3.30e-20 | 87.4 |
| MsG0280009432.01.T01 | AT4G35580 | 35.526 | 152 | 94 | 2 | 9 | 156 | 8 | 159 | 6.62e-20 | 90.9 |
| MsG0280009432.01.T01 | AT4G35580 | 35.526 | 152 | 94 | 2 | 9 | 156 | 8 | 159 | 9.60e-20 | 90.5 |
| MsG0280009432.01.T01 | AT4G35580 | 35.526 | 152 | 94 | 2 | 9 | 156 | 8 | 159 | 9.75e-20 | 90.5 |
| MsG0280009432.01.T01 | AT5G22290 | 30.435 | 184 | 121 | 3 | 9 | 190 | 20 | 198 | 2.82e-19 | 87.8 |
| MsG0280009432.01.T01 | AT4G28530 | 34.337 | 166 | 87 | 6 | 10 | 156 | 10 | 172 | 1.97e-18 | 85.5 |
| MsG0280009432.01.T01 | AT1G34180 | 29.630 | 162 | 96 | 3 | 12 | 156 | 18 | 178 | 3.29e-17 | 83.2 |
| MsG0280009432.01.T01 | AT1G34180 | 29.630 | 162 | 96 | 3 | 12 | 156 | 18 | 178 | 5.25e-17 | 82.0 |
| MsG0280009432.01.T01 | AT3G44290 | 31.373 | 153 | 95 | 4 | 9 | 159 | 13 | 157 | 9.62e-16 | 75.9 |
| MsG0280009432.01.T01 | AT3G44290 | 31.333 | 150 | 93 | 4 | 12 | 159 | 16 | 157 | 4.33e-15 | 75.5 |
| MsG0280009432.01.T01 | AT1G32870 | 30.128 | 156 | 101 | 3 | 10 | 159 | 10 | 163 | 2.81e-14 | 73.9 |
| MsG0280009432.01.T01 | AT1G32870 | 30.128 | 156 | 101 | 3 | 10 | 159 | 10 | 163 | 2.91e-14 | 73.9 |
| MsG0280009432.01.T01 | AT1G32870 | 30.128 | 156 | 101 | 3 | 10 | 159 | 46 | 199 | 3.05e-14 | 73.9 |
| MsG0280009432.01.T01 | AT5G64530 | 30.178 | 169 | 84 | 5 | 8 | 156 | 1 | 155 | 1.05e-12 | 66.2 |
| MsG0280009432.01.T01 | AT5G64530 | 34.848 | 132 | 72 | 4 | 8 | 137 | 1 | 120 | 2.27e-12 | 64.7 |
Find 77 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGTATTTCTTGTCCTTA+TGG | 0.255246 | 2:-51849394 | None:intergenic |
| TAACAGTTCCTCCAGGGTTT+AGG | 0.294791 | 2:+51848543 | MsG0280009432.01.T01:CDS |
| GAGCAACTACAGCTGGGTTT+TGG | 0.302263 | 2:+51849435 | MsG0280009432.01.T01:CDS |
| GGTGCTGCTATGGCTGATTC+TGG | 0.310303 | 2:-51849998 | None:intergenic |
| TTTGGAATTGGTGTGATATA+TGG | 0.312042 | 2:-51849480 | None:intergenic |
| GGTGCAGCCTGGTGATTATT+AGG | 0.325193 | 2:-51850238 | None:intergenic |
| AATAACACTACCACCTTTGA+TGG | 0.325590 | 2:+51849947 | MsG0280009432.01.T01:CDS |
| CTTCTTCTTCAATTTCTTGT+TGG | 0.338565 | 2:-51849820 | None:intergenic |
| TCATTCCAATCCTTTGGAAT+TGG | 0.343013 | 2:-51849492 | None:intergenic |
| TGCATGTGATGATGATGTTT+TGG | 0.354863 | 2:-51849899 | None:intergenic |
| ATGGAATGGATCTTAATCTA+AGG | 0.360900 | 2:+51850197 | MsG0280009432.01.T01:CDS |
| CTATTTGTTCTTGTTCCTGT+TGG | 0.367370 | 2:-51849413 | None:intergenic |
| TGGTGGTGATTGGTCATTCT+TGG | 0.375350 | 2:+51850153 | MsG0280009432.01.T01:CDS |
| TATTTGTTCTTGTTCCTGTT+GGG | 0.389319 | 2:-51849412 | None:intergenic |
| TGATGATAATGCAGAAGTTC+AGG | 0.405616 | 2:+51849596 | MsG0280009432.01.T01:CDS |
| TTTGGTTCTAGAAAATGGTT+TGG | 0.426326 | 2:-51849881 | None:intergenic |
| ATCTCAACAGACTTGAGCCT+TGG | 0.426871 | 2:+51848657 | MsG0280009432.01.T01:CDS |
| GATAAGTGTAGGATTGGATC+AGG | 0.432547 | 2:+51849344 | MsG0280009432.01.T01:intron |
| CTCATGGTCACAAAACTGAT+TGG | 0.440810 | 2:+51849547 | MsG0280009432.01.T01:CDS |
| TCACAACCAAGGTAATGAAA+TGG | 0.449921 | 2:-51850298 | None:intergenic |
| GGAAGTTGGTGGTGCTGCTA+TGG | 0.450870 | 2:-51850008 | None:intergenic |
| ATGGTATTTCTTCAGCCATA+AGG | 0.456519 | 2:+51849379 | MsG0280009432.01.T01:CDS |
| GGATGTCCATGGATGAGTTA+TGG | 0.461281 | 2:-51850033 | None:intergenic |
| ACAAATAGAGCAACTACAGC+TGG | 0.470753 | 2:+51849428 | MsG0280009432.01.T01:CDS |
| AAATTTCCATTTCATTACCT+TGG | 0.472448 | 2:+51850292 | MsG0280009432.01.T01:CDS |
| GCTGCACCTTCTGCTGCTGT+TGG | 0.472576 | 2:+51850253 | MsG0280009432.01.T01:CDS |
| TCACACCAATTCCAAAGGAT+TGG | 0.473081 | 2:+51849487 | MsG0280009432.01.T01:CDS |
| TCTCAACAGACTTGAGCCTT+GGG | 0.476536 | 2:+51848658 | MsG0280009432.01.T01:CDS |
| AAGATGGATGGGTAGTATGC+AGG | 0.497034 | 2:+51849765 | MsG0280009432.01.T01:CDS |
| TACAGAATGATGCAAGGTAG+TGG | 0.509628 | 2:+51848515 | None:intergenic |
| TCTGATAACATCAAGATCAA+TGG | 0.515700 | 2:-51848627 | None:intergenic |
| CATCATCACATGCAACAACT+AGG | 0.517757 | 2:+51849908 | MsG0280009432.01.T01:CDS |
| GGTTGATCAGTGGTGGTGAT+TGG | 0.522276 | 2:+51850143 | MsG0280009432.01.T01:CDS |
| TAAAGAAGCTCCTCATCAGT+AGG | 0.525822 | 2:-51848572 | None:intergenic |
| CAGCAGCAGAAGGTGCAGCC+TGG | 0.528612 | 2:-51850249 | None:intergenic |
| GGAGAATTAACAGTTCCTCC+AGG | 0.530256 | 2:+51848536 | MsG0280009432.01.T01:CDS |
| AAGGACAAGAAATACCCAAC+AGG | 0.531044 | 2:+51849398 | MsG0280009432.01.T01:CDS |
| ACAACAACAAATACTAGCTC+AGG | 0.532614 | 2:+51850085 | MsG0280009432.01.T01:CDS |
| AATGCTCTCAAAATTTGTTG+AGG | 0.538669 | 2:+51850059 | MsG0280009432.01.T01:CDS |
| TACACTGGACGTGCTCCTCA+TGG | 0.542939 | 2:+51849531 | MsG0280009432.01.T01:CDS |
| GACCATTTGTTGATCTCATG+TGG | 0.545405 | 2:-51849859 | None:intergenic |
| TTCCTTCCATAACTCATCCA+TGG | 0.549441 | 2:+51850027 | MsG0280009432.01.T01:CDS |
| AGCAACAACAACAAGGAGAA+AGG | 0.551906 | 2:+51850122 | MsG0280009432.01.T01:CDS |
| AGATGGATGGGTAGTATGCA+GGG | 0.553010 | 2:+51849766 | MsG0280009432.01.T01:CDS |
| AGAGCATTCAAGGATGTCCA+TGG | 0.554757 | 2:-51850044 | None:intergenic |
| GAGAATTAACAGTTCCTCCA+GGG | 0.560980 | 2:+51848537 | MsG0280009432.01.T01:CDS |
| GATCAGGGCCACAAAATGAA+TGG | 0.561417 | 2:+51849360 | MsG0280009432.01.T01:CDS |
| AGCTTCTTTACTATTACTTG+AGG | 0.562735 | 2:+51848585 | MsG0280009432.01.T01:CDS |
| AACCACATGAGATCAACAAA+TGG | 0.569176 | 2:+51849857 | MsG0280009432.01.T01:CDS |
| AATTCCAAAGGATTGGAATG+AGG | 0.575697 | 2:+51849494 | MsG0280009432.01.T01:CDS |
| TAGATGAATTGTACCATCAA+AGG | 0.576851 | 2:-51849960 | None:intergenic |
| ACTTGCATCACACAATGGAA+TGG | 0.578666 | 2:+51850183 | MsG0280009432.01.T01:CDS |
| GAAGTTCCAACAGCAGCAGA+AGG | 0.586198 | 2:-51850259 | None:intergenic |
| TGTGTACCTTTGAGATCCCA+AGG | 0.590405 | 2:-51848674 | None:intergenic |
| GATGAGTTATGGAAGGAAGT+TGG | 0.592652 | 2:-51850022 | None:intergenic |
| CAAATAGAGCAACTACAGCT+GGG | 0.601722 | 2:+51849429 | MsG0280009432.01.T01:CDS |
| GAAAACTTAGTGTTCTACAC+TGG | 0.602734 | 2:+51849516 | MsG0280009432.01.T01:CDS |
| TAGGTTCCACCCTACTGATG+AGG | 0.604565 | 2:+51848562 | MsG0280009432.01.T01:CDS |
| GTCCATGGATGAGTTATGGA+AGG | 0.611571 | 2:-51850029 | None:intergenic |
| AAACTACTTGCATCACACAA+TGG | 0.620814 | 2:+51850178 | MsG0280009432.01.T01:CDS |
| AAAGAAGCTCCTCATCAGTA+GGG | 0.620933 | 2:-51848571 | None:intergenic |
| CTCATGCAGCAACAACAACA+AGG | 0.622496 | 2:+51850115 | MsG0280009432.01.T01:CDS |
| CTTGAGCCTTGGGATCTCAA+AGG | 0.623707 | 2:+51848668 | MsG0280009432.01.T01:CDS |
| GGAGAAAGGTTGATCAGTGG+TGG | 0.631877 | 2:+51850136 | MsG0280009432.01.T01:CDS |
| TAACACTCCTAATAATCACC+AGG | 0.641336 | 2:+51850231 | MsG0280009432.01.T01:CDS |
| CATTATCATCATCATCAAGA+CGG | 0.647901 | 2:-51849584 | None:intergenic |
| GTAGGGTGGAACCTAAACCC+TGG | 0.648435 | 2:-51848554 | None:intergenic |
| GAAGCTCCTCATCAGTAGGG+TGG | 0.649001 | 2:-51848568 | None:intergenic |
| ATGAATTGTACCATCAAAGG+TGG | 0.652155 | 2:-51849957 | None:intergenic |
| ATATATCACACCAATTCCAA+AGG | 0.658326 | 2:+51849482 | MsG0280009432.01.T01:CDS |
| TCTGTATACAGAATGATGCA+AGG | 0.666488 | 2:+51848509 | None:intergenic |
| GAGTTATGGAAGGAAGTTGG+TGG | 0.671918 | 2:-51850019 | None:intergenic |
| CAAGGAGAAAGGTTGATCAG+TGG | 0.686081 | 2:+51850133 | MsG0280009432.01.T01:CDS |
| GATTCTGGACTGAACAATTG+TGG | 0.689594 | 2:-51849983 | None:intergenic |
| ATAAGTGTAGGATTGGATCA+GGG | 0.691336 | 2:+51849345 | MsG0280009432.01.T01:intron |
| TATCATGAGACTCACAACCA+AGG | 0.694185 | 2:-51850309 | None:intergenic |
| GGGTGGAACCTAAACCCTGG+AGG | 0.759919 | 2:-51848551 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATGAACTAATACTA+TGG | + | Chr2:51848893-51848912 | MsG0280009432.01.T01:intron | 15.0% |
| !! | TATATATGTGATCTATCAAA+TGG | + | Chr2:51849699-51849718 | MsG0280009432.01.T01:intron | 20.0% |
| !!! | CTATATTTTTCAAATCATTG+CGG | - | Chr2:51849150-51849169 | None:intergenic | 20.0% |
| !!! | CTTTGTTTCATACTATATAT+AGG | + | Chr2:51848825-51848844 | MsG0280009432.01.T01:intron | 20.0% |
| !!! | GTGTTTTTAGTTTGTATTAA+TGG | - | Chr2:51849041-51849060 | None:intergenic | 20.0% |
| ! | AAATTTCCATTTCATTACCT+TGG | + | Chr2:51850292-51850311 | MsG0280009432.01.T01:CDS | 25.0% |
| ! | ATTGTGAGAAGCAATATATT+TGG | - | Chr2:51848944-51848963 | None:intergenic | 25.0% |
| ! | CGCAATGATTTGAAAAATAT+AGG | + | Chr2:51849148-51849167 | MsG0280009432.01.T01:intron | 25.0% |
| ! | TATACATGCTGAAATATGAT+CGG | + | Chr2:51848977-51848996 | MsG0280009432.01.T01:intron | 25.0% |
| !! | AAGAAATACCATTCATTTTG+TGG | - | Chr2:51849371-51849390 | None:intergenic | 25.0% |
| !! | ACTACAAAACTATTTTACAC+CGG | + | Chr2:51849005-51849024 | MsG0280009432.01.T01:intron | 25.0% |
| AGCTTCTTTACTATTACTTG+AGG | + | Chr2:51848585-51848604 | MsG0280009432.01.T01:CDS | 30.0% | |
| ATATATCACACCAATTCCAA+AGG | + | Chr2:51849482-51849501 | MsG0280009432.01.T01:CDS | 30.0% | |
| ATGGAATGGATCTTAATCTA+AGG | + | Chr2:51850197-51850216 | MsG0280009432.01.T01:CDS | 30.0% | |
| ATTTGCATACCAACTTTAAG+TGG | - | Chr2:51848756-51848775 | None:intergenic | 30.0% | |
| CATTATCATCATCATCAAGA+CGG | - | Chr2:51849587-51849606 | None:intergenic | 30.0% | |
| CTAAATGTAATCACATGTGT+TGG | + | Chr2:51849174-51849193 | MsG0280009432.01.T01:intron | 30.0% | |
| CTTCTTCTTCAATTTCTTGT+TGG | - | Chr2:51849823-51849842 | None:intergenic | 30.0% | |
| TAGATGAATTGTACCATCAA+AGG | - | Chr2:51849963-51849982 | None:intergenic | 30.0% | |
| TATTTGTTCTTGTTCCTGTT+GGG | - | Chr2:51849415-51849434 | None:intergenic | 30.0% | |
| TCATGAGGTTCTTAATTACT+TGG | - | Chr2:51849731-51849750 | None:intergenic | 30.0% | |
| TCCTGAAAAACAAATTCATG+AGG | - | Chr2:51849746-51849765 | None:intergenic | 30.0% | |
| TCTGATAACATCAAGATCAA+TGG | - | Chr2:51848630-51848649 | None:intergenic | 30.0% | |
| TTCTCATAACCACTTAAAGT+TGG | + | Chr2:51848744-51848763 | MsG0280009432.01.T01:intron | 30.0% | |
| ! | TTTGGAATTGGTGTGATATA+TGG | - | Chr2:51849483-51849502 | None:intergenic | 30.0% |
| !! | AATGCTCTCAAAATTTGTTG+AGG | + | Chr2:51850059-51850078 | MsG0280009432.01.T01:CDS | 30.0% |
| !! | ACCTCATGAATTTGTTTTTC+AGG | + | Chr2:51849742-51849761 | MsG0280009432.01.T01:intron | 30.0% |
| !! | TTTGGTTCTAGAAAATGGTT+TGG | - | Chr2:51849884-51849903 | None:intergenic | 30.0% |
| !!! | ACAAATTTTGAGAGCATTCA+AGG | - | Chr2:51850057-51850076 | None:intergenic | 30.0% |
| !!! | GAATTTGTTTTTCAGGAAGA+TGG | + | Chr2:51849749-51849768 | MsG0280009432.01.T01:intron | 30.0% |
| !!! | GATGTTTTGGTTCTAGAAAA+TGG | - | Chr2:51849889-51849908 | None:intergenic | 30.0% |
| AAACTACTTGCATCACACAA+TGG | + | Chr2:51850178-51850197 | MsG0280009432.01.T01:CDS | 35.0% | |
| AACCACATGAGATCAACAAA+TGG | + | Chr2:51849857-51849876 | MsG0280009432.01.T01:CDS | 35.0% | |
| AATAACACTACCACCTTTGA+TGG | + | Chr2:51849947-51849966 | MsG0280009432.01.T01:CDS | 35.0% | |
| AATTCCAAAGGATTGGAATG+AGG | + | Chr2:51849494-51849513 | MsG0280009432.01.T01:CDS | 35.0% | |
| ACAACAACAAATACTAGCTC+AGG | + | Chr2:51850085-51850104 | MsG0280009432.01.T01:CDS | 35.0% | |
| ATAAGTGTAGGATTGGATCA+GGG | + | Chr2:51849345-51849364 | MsG0280009432.01.T01:intron | 35.0% | |
| ATGAATTGTACCATCAAAGG+TGG | - | Chr2:51849960-51849979 | None:intergenic | 35.0% | |
| ATGGTATTTCTTCAGCCATA+AGG | + | Chr2:51849379-51849398 | MsG0280009432.01.T01:CDS | 35.0% | |
| CTATTTGTTCTTGTTCCTGT+TGG | - | Chr2:51849416-51849435 | None:intergenic | 35.0% | |
| CTTAAGATTGAAGACATGTC+TGG | - | Chr2:51849220-51849239 | None:intergenic | 35.0% | |
| GAAAACTTAGTGTTCTACAC+TGG | + | Chr2:51849516-51849535 | MsG0280009432.01.T01:CDS | 35.0% | |
| GCGCATAAGTAAGATATGAT+TGG | - | Chr2:51848922-51848941 | None:intergenic | 35.0% | |
| TAACACTCCTAATAATCACC+AGG | + | Chr2:51850231-51850250 | MsG0280009432.01.T01:CDS | 35.0% | |
| TCACAACCAAGGTAATGAAA+TGG | - | Chr2:51850301-51850320 | None:intergenic | 35.0% | |
| TTGGGTATTTCTTGTCCTTA+TGG | - | Chr2:51849397-51849416 | None:intergenic | 35.0% | |
| ! | ACAAAACTATTTTACACCGG+TGG | + | Chr2:51849008-51849027 | MsG0280009432.01.T01:intron | 35.0% |
| ! | TATTAATGGATATGCACCAC+CGG | - | Chr2:51849027-51849046 | None:intergenic | 35.0% |
| ! | TGATGATAATGCAGAAGTTC+AGG | + | Chr2:51849596-51849615 | MsG0280009432.01.T01:CDS | 35.0% |
| ! | TTTTCCTCATTCCAATCCTT+TGG | - | Chr2:51849501-51849520 | None:intergenic | 35.0% |
| !! | TCATTCCAATCCTTTGGAAT+TGG | - | Chr2:51849495-51849514 | None:intergenic | 35.0% |
| !! | TGCATGTGATGATGATGTTT+TGG | - | Chr2:51849902-51849921 | None:intergenic | 35.0% |
| !!! | TGTTTTTCAGGAAGATGGAT+GGG | + | Chr2:51849754-51849773 | MsG0280009432.01.T01:intron | 35.0% |
| !!! | TTGTTTTTCAGGAAGATGGA+TGG | + | Chr2:51849753-51849772 | MsG0280009432.01.T01:intron | 35.0% |
| AAAGAAGCTCCTCATCAGTA+GGG | - | Chr2:51848574-51848593 | None:intergenic | 40.0% | |
| AACACTTGCACTAGTAACAC+CGG | + | Chr2:51849102-51849121 | MsG0280009432.01.T01:intron | 40.0% | |
| AAGGACAAGAAATACCCAAC+AGG | + | Chr2:51849398-51849417 | MsG0280009432.01.T01:CDS | 40.0% | |
| ACAAATAGAGCAACTACAGC+TGG | + | Chr2:51849428-51849447 | MsG0280009432.01.T01:CDS | 40.0% | |
| ACTTGCATCACACAATGGAA+TGG | + | Chr2:51850183-51850202 | MsG0280009432.01.T01:CDS | 40.0% | |
| AGCAACAACAACAAGGAGAA+AGG | + | Chr2:51850122-51850141 | MsG0280009432.01.T01:CDS | 40.0% | |
| ATTGCGGATATCAACGTATC+AGG | - | Chr2:51849134-51849153 | None:intergenic | 40.0% | |
| CAAATAGAGCAACTACAGCT+GGG | + | Chr2:51849429-51849448 | MsG0280009432.01.T01:CDS | 40.0% | |
| CATCATCACATGCAACAACT+AGG | + | Chr2:51849908-51849927 | MsG0280009432.01.T01:CDS | 40.0% | |
| CTCATGGTCACAAAACTGAT+TGG | + | Chr2:51849547-51849566 | MsG0280009432.01.T01:CDS | 40.0% | |
| GAGAATTAACAGTTCCTCCA+GGG | + | Chr2:51848537-51848556 | MsG0280009432.01.T01:CDS | 40.0% | |
| GATAAGTGTAGGATTGGATC+AGG | + | Chr2:51849344-51849363 | MsG0280009432.01.T01:intron | 40.0% | |
| GATGAGTTATGGAAGGAAGT+TGG | - | Chr2:51850025-51850044 | None:intergenic | 40.0% | |
| GATTCTGGACTGAACAATTG+TGG | - | Chr2:51849986-51850005 | None:intergenic | 40.0% | |
| GTTGCAGATAAGTGTAGGAT+TGG | + | Chr2:51849338-51849357 | MsG0280009432.01.T01:intron | 40.0% | |
| TAAAGAAGCTCCTCATCAGT+AGG | - | Chr2:51848575-51848594 | None:intergenic | 40.0% | |
| TATCATGAGACTCACAACCA+AGG | - | Chr2:51850312-51850331 | None:intergenic | 40.0% | |
| TCACACCAATTCCAAAGGAT+TGG | + | Chr2:51849487-51849506 | MsG0280009432.01.T01:CDS | 40.0% | |
| TTCCTTCCATAACTCATCCA+TGG | + | Chr2:51850027-51850046 | MsG0280009432.01.T01:CDS | 40.0% | |
| TTGCGGATATCAACGTATCA+GGG | - | Chr2:51849133-51849152 | None:intergenic | 40.0% | |
| ! | CACTTGTTGCAGATAAGTGT+AGG | + | Chr2:51849333-51849352 | MsG0280009432.01.T01:intron | 40.0% |
| ! | GACCATTTGTTGATCTCATG+TGG | - | Chr2:51849862-51849881 | None:intergenic | 40.0% |
| !! | CAATCAGTTTTGTGACCATG+AGG | - | Chr2:51849549-51849568 | None:intergenic | 40.0% |
| !!! | CACATGTGTTGGTTTTGTCT+CGG | + | Chr2:51849185-51849204 | MsG0280009432.01.T01:intron | 40.0% |
| AAGATGGATGGGTAGTATGC+AGG | + | Chr2:51849765-51849784 | MsG0280009432.01.T01:CDS | 45.0% | |
| AGATGGATGGGTAGTATGCA+GGG | + | Chr2:51849766-51849785 | MsG0280009432.01.T01:CDS | 45.0% | |
| ATCTCAACAGACTTGAGCCT+TGG | + | Chr2:51848657-51848676 | MsG0280009432.01.T01:CDS | 45.0% | |
| CATGCACTACAAGTGTATGC+AGG | - | Chr2:51849635-51849654 | None:intergenic | 45.0% | |
| CTCATGCAGCAACAACAACA+AGG | + | Chr2:51850115-51850134 | MsG0280009432.01.T01:CDS | 45.0% | |
| GAGTTATGGAAGGAAGTTGG+TGG | - | Chr2:51850022-51850041 | None:intergenic | 45.0% | |
| GATCAGGGCCACAAAATGAA+TGG | + | Chr2:51849360-51849379 | MsG0280009432.01.T01:CDS | 45.0% | |
| GGAGAATTAACAGTTCCTCC+AGG | + | Chr2:51848536-51848555 | MsG0280009432.01.T01:CDS | 45.0% | |
| GGATGTCCATGGATGAGTTA+TGG | - | Chr2:51850036-51850055 | None:intergenic | 45.0% | |
| GTCCATGGATGAGTTATGGA+AGG | - | Chr2:51850032-51850051 | None:intergenic | 45.0% | |
| TAACAGTTCCTCCAGGGTTT+AGG | + | Chr2:51848543-51848562 | MsG0280009432.01.T01:CDS | 45.0% | |
| TCTCAACAGACTTGAGCCTT+GGG | + | Chr2:51848658-51848677 | MsG0280009432.01.T01:CDS | 45.0% | |
| ! | AGAGCATTCAAGGATGTCCA+TGG | - | Chr2:51850047-51850066 | None:intergenic | 45.0% |
| ! | CAAGGAGAAAGGTTGATCAG+TGG | + | Chr2:51850133-51850152 | MsG0280009432.01.T01:CDS | 45.0% |
| ! | TCAACGTATCAGGGTTGATC+CGG | - | Chr2:51849124-51849143 | None:intergenic | 45.0% |
| ! | TGGTGGTGATTGGTCATTCT+TGG | + | Chr2:51850153-51850172 | MsG0280009432.01.T01:CDS | 45.0% |
| !! | TGTGTACCTTTGAGATCCCA+AGG | - | Chr2:51848677-51848696 | None:intergenic | 45.0% |
| CTTGAGCCTTGGGATCTCAA+AGG | + | Chr2:51848668-51848687 | MsG0280009432.01.T01:CDS | 50.0% | |
| GAAGTTCCAACAGCAGCAGA+AGG | - | Chr2:51850262-51850281 | None:intergenic | 50.0% | |
| GGTGCAGCCTGGTGATTATT+AGG | - | Chr2:51850241-51850260 | None:intergenic | 50.0% | |
| TAGGTTCCACCCTACTGATG+AGG | + | Chr2:51848562-51848581 | MsG0280009432.01.T01:CDS | 50.0% | |
| ! | GAGCAACTACAGCTGGGTTT+TGG | + | Chr2:51849435-51849454 | MsG0280009432.01.T01:CDS | 50.0% |
| ! | GGAGAAAGGTTGATCAGTGG+TGG | + | Chr2:51850136-51850155 | MsG0280009432.01.T01:CDS | 50.0% |
| ! | GGTTGATCAGTGGTGGTGAT+TGG | + | Chr2:51850143-51850162 | MsG0280009432.01.T01:CDS | 50.0% |
| !!! | GCTGGGTTTTGGAAAGCAAC+AGG | + | Chr2:51849446-51849465 | MsG0280009432.01.T01:CDS | 50.0% |
| !!! | TGTTGGTTTTGTCTCGGCGT+CGG | + | Chr2:51849191-51849210 | MsG0280009432.01.T01:intron | 50.0% |
| GAAGCTCCTCATCAGTAGGG+TGG | - | Chr2:51848571-51848590 | None:intergenic | 55.0% | |
| GTAGGGTGGAACCTAAACCC+TGG | - | Chr2:51848557-51848576 | None:intergenic | 55.0% | |
| TACACTGGACGTGCTCCTCA+TGG | + | Chr2:51849531-51849550 | MsG0280009432.01.T01:CDS | 55.0% | |
| !! | GGAAGTTGGTGGTGCTGCTA+TGG | - | Chr2:51850011-51850030 | None:intergenic | 55.0% |
| !! | GGTGCTGCTATGGCTGATTC+TGG | - | Chr2:51850001-51850020 | None:intergenic | 55.0% |
| GCTGCACCTTCTGCTGCTGT+TGG | + | Chr2:51850253-51850272 | MsG0280009432.01.T01:CDS | 60.0% | |
| GGGTGGAACCTAAACCCTGG+AGG | - | Chr2:51848554-51848573 | None:intergenic | 60.0% | |
| ! | CAGCAGCAGAAGGTGCAGCC+TGG | - | Chr2:51850252-51850271 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 51848521 | 51850351 | 51848521 | ID=MsG0280009432.01;Name=MsG0280009432.01 |
| Chr2 | mRNA | 51848521 | 51850351 | 51848521 | ID=MsG0280009432.01.T01;Parent=MsG0280009432.01;Name=MsG0280009432.01.T01;_AED=0.18;_eAED=0.26;_QI=0|0|0|1|1|1|3|0|339 |
| Chr2 | exon | 51848521 | 51848689 | 51848521 | ID=MsG0280009432.01.T01:exon:8436;Parent=MsG0280009432.01.T01 |
| Chr2 | exon | 51849355 | 51849617 | 51849355 | ID=MsG0280009432.01.T01:exon:8437;Parent=MsG0280009432.01.T01 |
| Chr2 | exon | 51849764 | 51850351 | 51849764 | ID=MsG0280009432.01.T01:exon:8438;Parent=MsG0280009432.01.T01 |
| Chr2 | CDS | 51848521 | 51848689 | 51848521 | ID=MsG0280009432.01.T01:cds;Parent=MsG0280009432.01.T01 |
| Chr2 | CDS | 51849355 | 51849617 | 51849355 | ID=MsG0280009432.01.T01:cds;Parent=MsG0280009432.01.T01 |
| Chr2 | CDS | 51849764 | 51850351 | 51849764 | ID=MsG0280009432.01.T01:cds;Parent=MsG0280009432.01.T01 |
| Gene Sequence |
| Protein sequence |
